Citrus Sinensis ID: 048709

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHcHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccHHcEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mnkemsgdgtdhrhqqqdkmipdkiDYVFKVVVIGdsavgksqilsrftknefcfdskstigvefqtRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDitkrqsfdHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAedqglffseasalngdnvDTAFFRLLQEIYALSKKELECGNGK
Flexible Loop (DISEMBL)
mnkemsgdgtdhrhqqqdkmipdKIDYVFKVVVIGDSAvgksqilsrftknefcfdskstigvefqtrtvtinskiikaqiwdtagQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEElrahadssirIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALskkelecgngk
Low Complexity Region (SEG)
MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK
Disordered region (IsUnstruct)
*********************PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALS**********
Disordered Region (DISOPRED)
*************************DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI**************
Disordered Region (DISEMBL)
*****************DKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK
Disordered Region (DISPRO)
*******************MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q9LNK1	237	Ras-related protein RABA3	yes	no	0.995	0.852	0.703	9e-79
Q40191	226	Ras-related protein Rab11	N/A	no	0.881	0.792	0.690	3e-66
Q9FJN8	226	Ras-related protein RABA4	no	no	0.852	0.765	0.693	3e-66
P25766	226	Ras-related protein RGP1	no	no	0.871	0.783	0.691	1e-65
Q9SMQ6	224	Ras-related protein RABA4	no	no	0.857	0.776	0.685	1e-65
Q9FE79	223	Ras-related protein RABA4	no	no	0.857	0.780	0.697	2e-65
Q40522	222	Ras-related protein Rab11	N/A	no	0.852	0.779	0.682	4e-65
Q9LH50	222	Ras-related protein RABA4	no	no	0.857	0.783	0.68	3e-64
Q40520	222	Ras-related protein Rab11	N/A	no	0.852	0.779	0.664	2e-63
Q39434	214	Ras-related protein Rab2B	N/A	no	0.847	0.803	0.653	3e-59

>sp|Q9LNK1|RABA3_ARATH Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1

 Score =  292 bits (748), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%), Gaps = 4/206 (1%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EMSG+  ++    +   +P+KIDYVFKVVVIGDSAVGK+Q+LSRFT NEFC+DSKST
Sbjct: 1   MNEEMSGESPENNKHVKKPTMPEKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKST 60

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRT+T+  K++KAQIWDTAGQERYRAVTSAYYRGALGA+VVYDITKR SFDHVA
Sbjct: 61  IGVEFQTRTITLRGKLVKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVA 120

Query: 121 RGVEELRAHADSSIRIILIGNKSDL-VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179
           R VEELRAHAD S  I+L+GNK+DL V   AV  ED VEFAE Q LFFSE SAL+G NVD
Sbjct: 121 RWVEELRAHADDSAVIMLVGNKADLSVGKRAVPTEDAVEFAETQRLFFSEVSALSGGNVD 180

Query: 180 TAFFRLLQEIYA---LSKKELECGNG 202
            AFFRLL+EI++   +S+K +E   G
Sbjct: 181 EAFFRLLEEIFSRVVVSRKAMESDGG 206

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 147/184 (79%), Gaps = 5/184 (2%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSKSTIGVEFQTRT+ I+ K +KAQIWD
Sbjct: 13  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ R +EELR HAD +I IILIGNK 
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKC 132

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKELEC--- 199
           DLV+   V  ED  EFAE +GLFF E SAL   NV++AF  +L EIY + +KK L     
Sbjct: 133 DLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADES 192

Query: 200 -GNG 202
            GNG
Sbjct: 193 QGNG 196

Lotus japonicus (taxid: 34305)

>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2 SV=1

 Score =  251 bits (640), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 145/173 (83%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+R+ ++EF  DSK+TIGVEFQTRT+ I+ K +KAQIWD
Sbjct: 13  KIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDIT+RQ+FDH+ R +EELRAHAD +I IILIGNKS
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           DLVD  A+  ED  EFAE +GLFF E SA N  NV++AF  +L EI+ +  K+
Sbjct: 133 DLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKK 185

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/178 (69%), Positives = 145/178 (81%), Gaps = 1/178 (0%)

Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +  KIDYVFKVV+IGDSAVGKSQ+L+RF +NEF  DSK+TIGVEFQTRT+ I+++ +KAQ
Sbjct: 11  VGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQ 70

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
           IWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVAR +EELR HAD +I I+LIG
Sbjct: 71  IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIG 130

Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
           NKSDL  +  V  ED  EFAE + LFF E SAL   NV+ AF  +L EIY + SKK L
Sbjct: 131 NKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL 188

May play an important role in plant growth and development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2 SV=1

 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/175 (68%), Positives = 146/175 (83%), Gaps = 1/175 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           K+DYVFKVV+IGDSAVGKSQ+L+RF ++EF  DSK+TIGVEFQTRT++I  K IKAQIWD
Sbjct: 13  KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYD+TKR++F+H+ R +EELRAHAD +I IILIGNKS
Sbjct: 73  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
           DL D  AV  ED  EFAE +GLFF E SALN  NV+ +F  L+ +IY  ++KK L
Sbjct: 133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNL 187

Regulator of membrane trafficking. May be required for secretion of cell wall components in cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c OS=Arabidopsis thaliana GN=RABA4C PE=2 SV=1

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/175 (69%), Positives = 147/175 (84%), Gaps = 1/175 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQ+L+RF++NEF  +SK+TIGVEFQTRT+ I+ K IKAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVAR +EELR HAD +I I+LIGNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKT 130

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
           DL  + AV  ED  EFA+ + LFF E SAL+ +NV+ +F  +L EIY + SKK L
Sbjct: 131 DLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNL 185

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1

 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/173 (68%), Positives = 142/173 (82%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ R +EELRAHAD +I I+LIGNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKT 130

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           DL D  AV  ED  EFA+ +GLFF E SA+   N++ AF  +L EI+ +  K+
Sbjct: 131 DLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKK 183

Nicotiana tabacum (taxid: 4097)

>sp|Q9LH50|RAA4D_ARATH Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 145/175 (82%), Gaps = 1/175 (0%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGK+Q+L+RF +NEF  DSK+TIGVEFQT+T+ I++K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYD+TKRQSFDH+A+ +EELR HAD +I I+LIGNK 
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKC 130

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
           DL  + AV  ED  EFA+ + LFF E SAL   NV+TAF  +L EIY  +SKK L
Sbjct: 131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSL 185

Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40520|RB11C_TOBAC Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 140/173 (80%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           KIDYVFKVV+IGDSAVGK+QIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWD
Sbjct: 11  KIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWD 70

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
           TAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ R +EELRAHAD +I I+L GNK+
Sbjct: 71  TAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKT 130

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           DL D  AV  ED  EFA+ +GLFF E SA+    ++ AF  +L EI+ +  K+
Sbjct: 131 DLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKK 183

Nicotiana tabacum (taxid: 4097)

>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS ILSRFT+NEFC +SKSTIGVEF TRT+ +  K +KAQIWDTA
Sbjct: 10  DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDITKRQ+FD+V R + ELR HADS+I I++ GNKSDL
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
             + AVS ED    AE +GL F E SAL   N++ AF  +L EIY  +SKK L
Sbjct: 130 KHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKAL 182

Beta vulgaris (taxid: 161934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
296088976	239	unnamed protein product [Vitis vinifera]	0.975	0.828	0.792	3e-85
356559913	244	PREDICTED: ras-related protein RABA3-lik	1.0	0.831	0.764	1e-84
356520251	245	PREDICTED: ras-related protein RABA3-lik	1.0	0.828	0.764	1e-84
359489460	235	PREDICTED: ras-related protein RABA3-lik	0.955	0.825	0.797	4e-84
358248878	236	uncharacterized protein LOC100787725 [Gl	0.980	0.843	0.769	1e-83
255585255	231	protein with unknown function [Ricinus c	0.960	0.844	0.769	2e-83
1370144	242	RAB11B [Lotus japonicus]	0.995	0.834	0.757	5e-82
356573249	236	PREDICTED: ras-related protein RABA3-lik	0.980	0.843	0.754	5e-82
255644772	236	unknown [Glycine max]	0.980	0.843	0.754	5e-82
224127991	219	predicted protein [Populus trichocarpa]	0.896	0.831	0.825	7e-82

>gi|296088976|emb|CBI38679.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 179/202 (88%), Gaps = 4/202 (1%)

Query: 1   MNKEMSGDGT--DHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK 58
           M  EM+G G+  D  HQ Q+    +KIDYVFKVVVIGDSAVGK+QILSRFTKNEFCFDSK
Sbjct: 1   MKDEMNGAGSHGDQSHQNQENG-HEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSK 59

Query: 59  STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH 118
           STIGVEFQTRTVTI SK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQ+FDH
Sbjct: 60  STIGVEFQTRTVTIKSKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDH 119

Query: 119 VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178
           VAR VEELRAHAD+SI I+L+GNK+DLVD  AV +ED VEF+EDQGLFFSE SALNGDNV
Sbjct: 120 VARWVEELRAHADTSIVIMLVGNKADLVDQRAVPSEDAVEFSEDQGLFFSETSALNGDNV 179

Query: 179 DTAFFRLLQEIYA-LSKKELEC 199
           +TAFFR+L+EIY  +SKK LEC
Sbjct: 180 ETAFFRVLEEIYGVVSKKALEC 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559913|ref|XP_003548240.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/208 (76%), Positives = 179/208 (86%), Gaps = 5/208 (2%)

Query: 1   MNKEMSGDGTDHR----HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD 56
           MN EM+G   + R    H++ D  + +KIDYVFKVVVIGDSAVGK+QILSRF KNEFCFD
Sbjct: 1   MNPEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFD 60

Query: 57  SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF 116
           SKSTIGVEFQTRTVTIN+K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSF
Sbjct: 61  SKSTIGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSF 120

Query: 117 DHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176
           DHVAR VEELRAHADSSI I+L+GNK+DLVD   V  ED VEFAEDQGLFFSE SAL+GD
Sbjct: 121 DHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGD 180

Query: 177 NVDTAFFRLLQEI-YALSKKELECGNGK 203
           NV++AF +LL+EI   +SKK LECG GK
Sbjct: 181 NVESAFLKLLEEINRVVSKKALECGLGK 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520251|ref|XP_003528777.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 159/208 (76%), Positives = 179/208 (86%), Gaps = 5/208 (2%)

Query: 1   MNKEMSGDGTDHR----HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD 56
           MN+EM+G   + R    H++ D  + +KIDYVFKVVVIGDSAVGK+QILSRF KNEFCFD
Sbjct: 1   MNQEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFD 60

Query: 57  SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF 116
           SKSTIGVEFQTRTVTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSF
Sbjct: 61  SKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSF 120

Query: 117 DHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD 176
           DHVAR VEELRAHADSSI I+L+GNK+DLVD   V  ED VEFAEDQGLFFSE SAL+GD
Sbjct: 121 DHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGD 180

Query: 177 NVDTAFFRLLQEI-YALSKKELECGNGK 203
           NV++AF +LL+EI   +SKK LECG GK
Sbjct: 181 NVESAFLKLLEEINRVVSKKALECGYGK 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489460|ref|XP_002262618.2| PREDICTED: ras-related protein RABA3-like [Vitis vinifera]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 158/198 (79%), Positives = 177/198 (89%), Gaps = 4/198 (2%)

Query: 5   MSGDGT--DHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG 62
           M+G G+  D  HQ Q+    +KIDYVFKVVVIGDSAVGK+QILSRFTKNEFCFDSKSTIG
Sbjct: 1   MNGAGSHGDQSHQNQENG-HEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIG 59

Query: 63  VEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG 122
           VEFQTRTVTI SK+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQ+FDHVAR 
Sbjct: 60  VEFQTRTVTIKSKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARW 119

Query: 123 VEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           VEELRAHAD+SI I+L+GNK+DLVD  AV +ED VEF+EDQGLFFSE SALNGDNV+TAF
Sbjct: 120 VEELRAHADTSIVIMLVGNKADLVDQRAVPSEDAVEFSEDQGLFFSETSALNGDNVETAF 179

Query: 183 FRLLQEIYA-LSKKELEC 199
           FR+L+EIY  +SKK LEC
Sbjct: 180 FRVLEEIYGVVSKKALEC 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248878|ref|NP_001239700.1| uncharacterized protein LOC100787725 [Glycine max] gi|255639774|gb|ACU20180.1| unknown [Glycine max]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/204 (76%), Positives = 178/204 (87%), Gaps = 5/204 (2%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EM+G       ++    + DKIDYVFKVVVIGDSAVGK+QILSRF KNEFCFDSKST
Sbjct: 1   MNQEMNG----VEAERVKVNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKST 56

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDI+KRQSFDHVA
Sbjct: 57  IGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDISKRQSFDHVA 116

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
           R V+ELRAHADSSI I+LIGNK DLVD   V AED VEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIY-ALSKKELECGNGK 203
           AFF+LL+EI+  +SK+ LECGNGK
Sbjct: 177 AFFKLLEEIHRVISKRSLECGNGK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585255|ref|XP_002533328.1| protein with unknown function [Ricinus communis] gi|223526833|gb|EEF29049.1| protein with unknown function [Ricinus communis]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/204 (76%), Positives = 175/204 (85%), Gaps = 9/204 (4%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EM+GD  ++        + +KIDYVFKVVVIGDSAVGK+Q+LSRFTKNEFCFDSKST
Sbjct: 1   MNQEMNGDDQEN--------LQEKIDYVFKVVVIGDSAVGKTQLLSRFTKNEFCFDSKST 52

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTI  K++KAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKR +FDHVA
Sbjct: 53  IGVEFQTRTVTIKGKVVKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRATFDHVA 112

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
           R VEELRAHAD+SI I LIGNK+DLVD  AV  ED VEFAEDQGLFFSE SAL+GDNVD 
Sbjct: 113 RWVEELRAHADNSIVITLIGNKADLVDQRAVPTEDAVEFAEDQGLFFSETSALSGDNVDR 172

Query: 181 AFFRLLQEIYA-LSKKELECGNGK 203
           AFFRLL+EIY  +SKK LECG  K
Sbjct: 173 AFFRLLEEIYGVISKKSLECGGHK 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370144|emb|CAA98178.1| RAB11B [Lotus japonicus]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 178/206 (86%), Gaps = 4/206 (1%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EM+G   +  H Q+ K + DKIDYVFKVVVIGDSAVGK+QILSRF KNEFCFDSK+T
Sbjct: 1   MNQEMNGVEAEKLHLQE-KNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKAT 59

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTRTVTIN+K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 60  IGVEFQTRTVTINAKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 119

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
           R VEELRAHADSSI I+LIGNK DLVD   V +ED VEFAE+QGLFFSE SAL G+NV++
Sbjct: 120 RWVEELRAHADSSIVIMLIGNKGDLVDQRVVLSEDAVEFAEEQGLFFSETSALTGENVES 179

Query: 181 AFFRLLQEI--YALSKKEL-ECGNGK 203
           AF +LLQEI    +SK+ L +C +GK
Sbjct: 180 AFLKLLQEINTRVVSKRSLSDCNHGK 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573249|ref|XP_003554775.1| PREDICTED: ras-related protein RABA3-like [Glycine max]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 176/204 (86%), Gaps = 5/204 (2%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EM+G   +         + DKIDYVFKVVVIGDSAVGK+QILSRF KNEFCF+SKST
Sbjct: 1   MNQEMNGVEAERVKVN----VHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFNSKST 56

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTR+VTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 57  IGVEFQTRSVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 116

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
           R V+ELRAHADSSI I+LIGNK DLVD   V AED VEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIY-ALSKKELECGNGK 203
           +FF+LL+EI+  +SK+ LEC NGK
Sbjct: 177 SFFKLLEEIHRVISKRSLECDNGK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644772|gb|ACU22888.1| unknown [Glycine max]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 154/204 (75%), Positives = 176/204 (86%), Gaps = 5/204 (2%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           MN+EM+G   +         + DKIDYVFKVVVIGDSAVGK+QILSRF KNEFCF+SKST
Sbjct: 1   MNQEMNGVEAERVKVN----VHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFNSKST 56

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           IGVEFQTR+VTIN K+IKAQIWDTAGQERYRAVTSAYYRGALGA++VYDITKRQSFDHVA
Sbjct: 57  IGVEFQTRSVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVA 116

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
           R V+ELRAHADSSI I+LIGNK DLVD   V AED VEFAEDQGLFFSE SAL+G+NV++
Sbjct: 117 RWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVES 176

Query: 181 AFFRLLQEIY-ALSKKELECGNGK 203
           +FF+LL+EI+  +SK+ LEC NGK
Sbjct: 177 SFFKLLEEIHRVISKRSLECDNGK 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127991|ref|XP_002320214.1| predicted protein [Populus trichocarpa] gi|222860987|gb|EEE98529.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 166/183 (90%), Gaps = 1/183 (0%)

Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           + +KIDYVFKVVVIGDSAVGK+QILSRFTKNEFCFDSKSTIGVEFQTRTV I  K+IKAQ
Sbjct: 1   VQEKIDYVFKVVVIGDSAVGKTQILSRFTKNEFCFDSKSTIGVEFQTRTVIIKDKVIKAQ 60

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
           IWDTAGQERYRAVTSAYYRGALGA++VYDITKR +FDHVAR VEELRAHAD+SI I+LIG
Sbjct: 61  IWDTAGQERYRAVTSAYYRGALGAMLVYDITKRPTFDHVARWVEELRAHADNSIVIMLIG 120

Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELEC 199
           NK+DLVD+ AV  ED VEFAE+QGLFFSE SAL+GDNVD AFFRLL+EIY  + KK LEC
Sbjct: 121 NKADLVDLRAVPTEDAVEFAEEQGLFFSETSALSGDNVDGAFFRLLEEIYGVICKKSLEC 180

Query: 200 GNG 202
           GNG
Sbjct: 181 GNG 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2035302	237	RABA3 "RAB GTPase homolog A3"	0.995	0.852	0.703	1.8e-71
TAIR|locus:2171790	226	RABA4a "RAB GTPase homolog A4A	0.857	0.769	0.697	1.9e-60
TAIR|locus:2140079	224	RABA4B "RAB GTPase homolog A4B	0.857	0.776	0.685	1.3e-59
TAIR|locus:2152753	223	RABA4C "RAB GTPase homolog A4C	0.857	0.780	0.697	1.3e-59
TAIR|locus:2082269	222	RABA4D "RAB GTPase homolog A4D	0.857	0.783	0.68	4.5e-59
TAIR|locus:2102777	217	RABA2c "RAB GTPase homolog A2C	0.871	0.815	0.634	1.6e-54
TAIR|locus:2124092	214	RABA1d "RAB GTPase homolog A1D	0.876	0.831	0.597	1.6e-54
TAIR|locus:2024276	217	RAB11c "RAB GTPase 11C" [Arabi	0.866	0.811	0.617	2.6e-54
TAIR|locus:2024992	214	RABA2b "RAB GTPase homolog A2B	0.871	0.827	0.623	5.5e-54
ASPGD|ASPL0000062894	210	srgE [Emericella nidulans (tax	0.901	0.871	0.603	1.1e-53

TAIR|locus:2035302 RABA3 "RAB GTPase homolog A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 145/206 (70%), Positives = 170/206 (82%)

Query:     1 MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
             MN+EMSG+  ++    +   +P+KIDYVFKVVVIGDSAVGK+Q+LSRFT NEFC+DSKST
Sbjct:     1 MNEEMSGESPENNKHVKKPTMPEKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKST 60

Query:    61 IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
             IGVEFQTRT+T+  K++KAQIWDTAGQERYRAVTSAYYRGALGA+VVYDITKR SFDHVA
Sbjct:    61 IGVEFQTRTITLRGKLVKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVA 120

Query:   121 RGVEELRAHADSSIRIILIGNKSDL-VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179
             R VEELRAHAD S  I+L+GNK+DL V   AV  ED VEFAE Q LFFSE SAL+G NVD
Sbjct:   121 RWVEELRAHADDSAVIMLVGNKADLSVGKRAVPTEDAVEFAETQRLFFSEVSALSGGNVD 180

Query:   180 TAFFRLLQEIYA---LSKKELECGNG 202
              AFFRLL+EI++   +S+K +E   G
Sbjct:   181 EAFFRLLEEIFSRVVVSRKAMESDGG 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2171790 RABA4a "RAB GTPase homolog A4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 122/175 (69%), Positives = 147/175 (84%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGKSQIL+R+ ++EF  DSK+TIGVEFQTRT+ I+ K +KAQIWD
Sbjct:    13 KIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWD 72

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYDIT+RQ+FDH+ R +EELRAHAD +I IILIGNKS
Sbjct:    73 TAGQERYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKS 132

Query:   144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             DLVD  A+  ED  EFAE +GLFF E SA N  NV++AF  +L EI+ + +KK L
Sbjct:   133 DLVDQRAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTVLTEIFNIVNKKSL 187

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2140079 RABA4B "RAB GTPase homolog A4B" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 120/175 (68%), Positives = 146/175 (83%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
             K+DYVFKVV+IGDSAVGKSQ+L+RF ++EF  DSK+TIGVEFQTRT++I  K IKAQIWD
Sbjct:    13 KVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSIKAQIWD 72

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYD+TKR++F+H+ R +EELRAHAD +I IILIGNKS
Sbjct:    73 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKS 132

Query:   144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
             DL D  AV  ED  EFAE +GLFF E SALN  NV+ +F  L+ +IY  ++KK L
Sbjct:   133 DLEDQRAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQIYNTVNKKNL 187

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019900 "kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2152753 RABA4C "RAB GTPase homolog A4C" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 122/175 (69%), Positives = 147/175 (84%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGKSQ+L+RF++NEF  +SK+TIGVEFQTRT+ I+ K IKAQIWD
Sbjct:    11 KIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEIDRKTIKAQIWD 70

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVAR +EELR HAD +I I+LIGNK+
Sbjct:    71 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKT 130

Query:   144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             DL  + AV  ED  EFA+ + LFF E SAL+ +NV+ +F  +L EIY + SKK L
Sbjct:   131 DLGTLRAVPTEDAKEFAQRENLFFMETSALDSNNVEPSFLTVLTEIYRIVSKKNL 185

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2082269 RABA4D "RAB GTPase homolog A4D" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 119/175 (68%), Positives = 145/175 (82%)

Query:    24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
             KIDYVFKVV+IGDSAVGK+Q+L+RF +NEF  DSK+TIGVEFQT+T+ I++K +KAQIWD
Sbjct:    11 KIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWD 70

Query:    84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
             TAGQERYRAVTSAYYRGA+GA++VYD+TKRQSFDH+A+ +EELR HAD +I I+LIGNK 
Sbjct:    71 TAGQERYRAVTSAYYRGAVGAMLVYDMTKRQSFDHMAKWLEELRGHADKNIVIMLIGNKC 130

Query:   144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             DL  + AV  ED  EFA+ + LFF E SAL   NV+TAF  +L EIY + SKK L
Sbjct:   131 DLGSLRAVPTEDAQEFAQRENLFFMETSALEATNVETAFLTILTEIYRIISKKSL 185

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0070382 "exocytic vesicle" evidence=IDA

GO:0048868 "pollen tube development" evidence=IGI;RCA

GO:0019900 "kinase binding" evidence=IPI

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0090404 "pollen tube tip" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

TAIR|locus:2102777 RABA2c "RAB GTPase homolog A2C" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 113/178 (63%), Positives = 138/178 (77%)

Query:    21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
             +  + DY+FK+V+IGDS VGKS ILSRFT+NEFC +SKSTIGVEF TRT  +  K IKAQ
Sbjct:     5 VDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQ 64

Query:    81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
             IWDTAGQERYRA+TSAYYRGA+GA++VYDITKRQ+FD+V R + ELR HADS+I I++ G
Sbjct:    65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAG 124

Query:   141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
             NKSDL  + +V+ ED    AE +GL F E SAL   NV+ AF  +L EIY  +SKK L
Sbjct:   125 NKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKAL 182

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2124092 RABA1d "RAB GTPase homolog A1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 107/179 (59%), Positives = 139/179 (77%)

Query:    23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
             D  DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ +N K+IKAQIW
Sbjct:     8 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIW 67

Query:    83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
             DTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V R + ELR H D +I ++L+GNK
Sbjct:    68 DTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNK 127

Query:   143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKELECG 200
             SDL  + AV  ED   FAE++ L+F E SAL   NV+ AF  +L +IY  +SKK +E G
Sbjct:   128 SDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAG 186

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2024276 RAB11c "RAB GTPase 11C" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 110/178 (61%), Positives = 142/178 (79%)

Query:    22 PDK-IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
             PD+  DY+FKVV+IGDS VGKS +LSRFT+NEFC +SKSTIGVEF TRT+ +  + +KAQ
Sbjct:     5 PDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQ 64

Query:    81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
             IWDTAGQERYRA+TSAYYRGALGA++VYD+TK  +F++V+R ++ELR HADS+I I+LIG
Sbjct:    65 IWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIG 124

Query:   141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             NK+DL  + AV+ ED   +AE +GL F E SAL   NV+ AF  +L E+Y + SKK +
Sbjct:   125 NKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSI 182

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

TAIR|locus:2024992 RABA2b "RAB GTPase homolog A2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 111/178 (62%), Positives = 139/178 (78%)

Query:    21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
             I  + DY+FK+V+IGDS VGKS ILSRFT+NEFC +SKSTIGVEF TRT+ +  K +KAQ
Sbjct:     5 IDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQ 64

Query:    81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
             IWDTAGQERYRA+TSAYYRGA+GA++VYDITKRQ+F++V R + ELR HADS+I I++ G
Sbjct:    65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAG 124

Query:   141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKEL 197
             NKSDL  + +V+ ED    AE +GL F E SAL   N++ AF  +L EIY  +SKK L
Sbjct:   125 NKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKKAL 182

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ASPGD|ASPL0000062894 srgE [Emericella nidulans (taxid:162425)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 111/184 (60%), Positives = 143/184 (77%)

Query:    20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
             M  D+ D++FKVV+IGDS  GKS +LSRFT+NEF  DSKSTIGVEF TR++ ++SK IKA
Sbjct:     1 MANDEYDFLFKVVLIGDSGTGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQVDSKTIKA 60

Query:    80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
             QIWDTAGQERYRA+TSAYYRGA+GA++VYDI+K Q++D+V R ++ELR HADS+I I+L+
Sbjct:    61 QIWDTAGQERYRAITSAYYRGAVGALLVYDISKHQTYDNVNRWLKELRDHADSNIVIMLV 120

Query:   140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKELE 198
             GNKSDL  + AV  E+  +FA +  L F E SAL+  NV+ AF  +L EIY + S K LE
Sbjct:   121 GNKSDLRHLRAVPTEEAKQFASENNLSFIETSALDASNVELAFQNILTEIYRIVSSKALE 180

Query:   199 CGNG 202
               +G
Sbjct:   181 GESG 184

GO:0034498 "early endosome to Golgi transport" evidence=IEA

GO:0033205 "cell cycle cytokinesis" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0071852 "fungal-type cell wall organization or biogenesis" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q40521	RB11B_TOBAC	No assigned EC number	0.5944	0.8817	0.8248	N/A	no
Q5R9M7	RB11A_PONAB	No assigned EC number	0.6022	0.8620	0.8101	yes	no
Q40195	RB11E_LOTJA	No assigned EC number	0.5777	0.8817	0.8211	N/A	no
Q40194	RB11D_LOTJA	No assigned EC number	0.5888	0.8817	0.8211	N/A	no
P17610	YPT3_SCHPO	No assigned EC number	0.5944	0.8817	0.8364	yes	no
Q2TA29	RB11A_BOVIN	No assigned EC number	0.6022	0.8620	0.8101	yes	no
P62491	RB11A_HUMAN	No assigned EC number	0.6022	0.8620	0.8101	yes	no
Q01111	YPT3_NICPL	No assigned EC number	0.5833	0.8817	0.8211	N/A	no
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.6022	0.8620	0.8101	yes	no
Q9LNK1	RABA3_ARATH	No assigned EC number	0.7038	0.9950	0.8523	yes	no
P22129	RB11B_DIPOM	No assigned EC number	0.5909	0.8620	0.8027	N/A	no
P38555	YPT31_YEAST	No assigned EC number	0.5909	0.8620	0.7847	yes	no
P62494	RB11A_RAT	No assigned EC number	0.6022	0.8620	0.8101	yes	no
Q39572	YPTC6_CHLRE	No assigned EC number	0.6158	0.8669	0.8148	N/A	no
Q52NJ1	RB11A_PIG	No assigned EC number	0.6022	0.8620	0.8101	yes	no
Q39434	RB2BV_BETVU	No assigned EC number	0.6531	0.8472	0.8037	N/A	no
P62490	RB11A_CANFA	No assigned EC number	0.6022	0.8620	0.8101	yes	no
P62493	RB11A_RABIT	No assigned EC number	0.6022	0.8620	0.8101	yes	no
P62492	RB11A_MOUSE	No assigned EC number	0.6022	0.8620	0.8101	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-106
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-85
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-81
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-76
pfam00071	162	pfam00071, Ras, Ras family	1e-75
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-68
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-62
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-61
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-59
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-59
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-57
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	7e-56
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-54
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-54
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-52
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-51
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-47
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-46
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	9e-45
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-44
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-42
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-41
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-41
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-40
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	9e-40
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-39
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-38
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-38
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-35
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-35
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-34
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-33
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-33
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	7e-33
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-32
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-31
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-29
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	7e-28
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-27
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-27
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-26
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-26
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-25
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-25
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-24
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-23
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-23
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-23
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	6e-23
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-22
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-22
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-21
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-21
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-19
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-19
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	7e-18
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-17
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-16
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-16
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-15
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	6e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	8e-15
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-14
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	9e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-13
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-13
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-12
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-12
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	7e-12
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-11
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-10
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	5e-10
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	5e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-09
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-09
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-08
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-08
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	5e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	6e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-07
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-06
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-06
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.001
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	0.002
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.003

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  302 bits (777), Expect = e-106
 Identities = 110/165 (66%), Positives = 135/165 (81%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS +LSRFT+NEF  DSKSTIGVEF TRT+ I+ K IKAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDITK+ +F++V R ++ELR HADS+I I+L+GNKSDL
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             + AV  E+   FAE  GL F E SAL+G NV+ AF +LL EIY
Sbjct: 121 RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  248 bits (637), Expect = 2e-85
 Identities = 86/164 (52%), Positives = 121/164 (73%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+++IGDS VGKS +LSRFT  +F    KSTIGV+F+T+T+ ++ K +K QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++TS+YYRGA+GA++VYDIT R+SF+++   ++ELR +A  ++ I+L+GNKSDL + 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192
             VS E+   FAE+ GL F E SA    NV+ AF  L +EI   
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  241 bits (617), Expect = 1e-81
 Identities = 112/173 (64%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS ILSRFT+NEFC +SKSTIGVEF TRT+ +  K +KAQIWDTA
Sbjct: 10  DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTA 69

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDITKRQ+FD+V R + ELR HADS+I I++ GNKSDL
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL 129

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             + +V+ ED    AE +GL F E SAL   NV+ AF  +L EIY + SKK L
Sbjct: 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Length = 216

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  226 bits (578), Expect = 2e-76
 Identities = 84/159 (52%), Positives = 121/159 (76%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V+IGDS VGK+ +L RF  N+F  + KSTIGV+F+++T+ ++ K +K QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++TS+YYRGA GA++VYD+T R+SF+++ + + EL+ +A  +I IIL+GNKSDL D 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
             VS E+  +FA++ GL F E SA  G+NVD AF  L +
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  224 bits (573), Expect = 1e-75
 Identities = 80/161 (49%), Positives = 112/161 (69%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD  VGKS +L RFT+N+F  +   TIGV+F T+T+ ++ K +K QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           +RA+   YYRGA G ++VYDIT R SF++V + +EE+  HAD ++ I+L+GNK DL D  
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            VS E+    A++ GL F E SA   +NV+ AF  L +EI 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  205 bits (524), Expect = 4e-68
 Identities = 78/162 (48%), Positives = 109/162 (67%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GDS+VGKS I+ RF KNEF  + +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RYR++   YYRGA  A+VVYDIT  +SF+     V+EL+ H   +I I L GNK+DL   
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             VS E+  E+A++ GL F E SA  G+NV+  F  + +++ 
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  190 bits (485), Expect = 3e-62
 Identities = 82/164 (50%), Positives = 112/164 (68%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+ K IK QIWDTAG
Sbjct: 3   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 62

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R++F+H+   +E+ R H++S++ I+LIGNK DL 
Sbjct: 63  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               VS E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 123 SRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 166

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  188 bits (478), Expect = 3e-61
 Identities = 80/164 (48%), Positives = 114/164 (69%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + +N + IK QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+RAVT +YYRGA GA++VYDIT+R +++H++  + + R   + +  I LIGNK+DL 
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               V+ E+  +FA++ GL F E SA  G+NV+ AF    ++IY
Sbjct: 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  184 bits (468), Expect = 1e-59
 Identities = 75/163 (46%), Positives = 114/163 (69%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K +K QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+R +TS+YYRGA G ++VYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL 
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D   V   +  EFA++ G+ F E SA N  NV+ AF  + +EI
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  182 bits (464), Expect = 5e-59
 Identities = 73/164 (44%), Positives = 111/164 (67%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF+++ F     STIG++F+ RT+ ++ K IK QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T++YYRGA+G ++VYDIT  +SF+++   +  +  HA   +  +L+GNK D+
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +   VS E+    A + G+ F E SA    NV+ AF  L ++I
Sbjct: 121 EEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  180 bits (457), Expect = 2e-57
 Identities = 84/165 (50%), Positives = 118/165 (71%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
            Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI++K IK QIWDTA
Sbjct: 4   AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQE +R++T +YYRGA GA++VYDIT+R++F+H+A  +E+ R HA++++ I+LIGNK DL
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL 123

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               AVS E+  +FA++ GL F EASA    NV+ AF +   +IY
Sbjct: 124 AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168

Length = 210

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  174 bits (442), Expect = 7e-56
 Identities = 79/161 (49%), Positives = 108/161 (67%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK ++IG +  GKS +L +F +N+F  DS  TIGVEF +R V +  K +K QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R+VT +YYRGA GA++VYDIT R+SF+ +   + + R  A   I IIL+GNK DL D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V+  +   FA++ GL F E SAL G+NV+ AF +  + I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  169 bits (431), Expect = 3e-54
 Identities = 71/165 (43%), Positives = 104/165 (63%), Gaps = 1/165 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+++IGDS VGK+ ++ RF    F     +TIGV+F  +T+ I  K +K QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T +YYR A GA++ YDIT+R SF+ V   +EE+  +  S++ ++LIGNK DL
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
            +   V  E+    AE  G+    E SA    NV+ AF  +  E+
Sbjct: 121 EEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  169 bits (431), Expect = 4e-54
 Identities = 71/162 (43%), Positives = 106/162 (65%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+++IGDS VGKS +L RFT + F  D  STIGV+F+ +TVT++ K +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
           R+R +TS+YYRGA G ++VYD+T+R +FD++   + EL  ++ +     +L+GNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V+ E+  +FA    + F E SA     V  AF  L+++I
Sbjct: 121 R-EVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  167 bits (425), Expect = 1e-52
 Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 3/179 (1%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTA 85
           Y F+++VIGDS VGKS +L RFT+  F   S  T+GV+F +R + I     IK Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSD 144
           GQER+R++T +YYR ++G ++V+DIT R+SF+HV   +EE R+H        IL+G+K D
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCD 120

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK-ELECGNG 202
           L     V+ E+  + A+D G+ + E SA  GDNV+ AF  L QEIY   K+ EL   +G
Sbjct: 121 LESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGELCALDG 179

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  162 bits (411), Expect = 5e-51
 Identities = 64/161 (39%), Positives = 106/161 (65%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+V +GD +VGK+ I++RF  + F    ++TIG++F ++T+ ++ K ++ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT RQSFD+  + ++++R    + + I+L+GNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             VS E+  + A++    F E SA  G NV   F ++ Q +
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  153 bits (389), Expect = 2e-47
 Identities = 73/157 (46%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV IN + +K QIWDTA
Sbjct: 4   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS YYRG  G +VVYD+T  +SF +V R ++E+  + D  +  +L+GNK+D 
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDD 122

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
            +   V  ED  +FA   G+   E SA    NV+  F
Sbjct: 123 PERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  149 bits (379), Expect = 3e-46
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FKVV++G+  VGK+ ++ R+ +N+F    +ST    F  +TV I  K I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY A+   YYR A GA++VYDIT   SF  V + ++EL+    ++I ++++GNK DL   
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             VS  +  E+A+  G    E SA  G  ++  F  L + +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  146 bits (369), Expect = 9e-45
 Identities = 67/164 (40%), Positives = 105/164 (64%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV I  + IK QIWDTA
Sbjct: 5   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +   + E+  +A++ +  IL+GNK DL
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +   VS +   EF++ Q +++ E SA   DNV+  F  L   +
Sbjct: 125 AERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  143 bits (363), Expect = 7e-44
 Identities = 72/162 (44%), Positives = 107/162 (66%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  N K IK QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           ERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ ++  + ++IL+GNK D+ D
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VSAE   + A+  G  F EASA    NV   F RL+  I
Sbjct: 121 ERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  139 bits (352), Expect = 9e-42
 Identities = 70/170 (41%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +V++IG   VGK+ ++ RFT + FC   KST+GV+F+ +TV +  K I+ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           + ++TSAYYR A G ++VYDITK+++FD + + ++ +  +A     ++L+GNK D     
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 150 AVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
            ++ +   +FA+   G+ F EASA +  NVD  F +L+ +I  L K  L+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI--LKKMPLD 169

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  137 bits (347), Expect = 3e-41
 Identities = 57/159 (35%), Positives = 98/159 (61%), Gaps = 5/159 (3%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++GDS VGK+ +++++   +F    K+TIG +F T+ VT++ +++  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSD 144
           R++++  A+YRGA   V+VYD+T  +SF+ +    +E    A      +   +++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 145 LVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAF 182
           L +   VS +   ++ + +G + + E SA    NVD AF
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAF 159

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  137 bits (347), Expect = 5e-41
 Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 11/170 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQ 87
           FKV+VIGD  VGK+ I+ R+    F    K+TIGV+F  + +  +   +++ Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL----RAHADSSIRIILIGNKS 143
           ER+  +T  YY+GA+GA++V+D+T+  +F+ V +   +L           I  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 144 DL-VDMWAVSAEDVVEFAEDQGLFFS---EASALNGDNVDTAFFRLLQEI 189
           DL  +  A   E + +F ++ G  F    E SA    N++ A   L++ I
Sbjct: 121 DLKKERLAKDPEQMDQFCKENG--FIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  134 bits (340), Expect = 3e-40
 Identities = 69/175 (39%), Positives = 108/175 (61%), Gaps = 11/175 (6%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI--------- 76
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  NS+          
Sbjct: 2   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 77  -IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
            +  Q+WDTAGQER+R++T+A++R A+G ++++D+T  QSF +V   + +L+AHA   + 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D   VS     E A+  G+ + E SA  G NV+ A   LL  I
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 176

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  134 bits (338), Expect = 9e-40
 Identities = 68/162 (41%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           FKV+++GDS VGK+ +L RF    F   S   T+G++F  + VT++   +K QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R+VT AYYR A   +++YD+T + SFD++   + E+  +A S + I+L+GNK+D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  ED    A++ G+ F E SA  G NV+ AF  + +E+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  131 bits (330), Expect = 5e-39
 Identities = 66/157 (42%), Positives = 100/157 (63%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           F++++IGDS VGK+ +L RFT NEF     STIGV+F+ +T+ ++   ++ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY+ +T  YYR A G  +VYDI+  +S+ H+ + V ++  +A   ++ ILIGNK+D    
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             V  E   + A++ G+ F E SA    N+  +F RL
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  128 bits (324), Expect = 6e-38
 Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 5/164 (3%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ RTV I+ + IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 88  ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDL 145
           ER+R ++   YYR     V VYD+T   SF  +   +EE   H+  + +  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAFFRLL 186
            +   V  +    FA+   +   E SA +    D+V+  F  L 
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  130 bits (327), Expect = 8e-38
 Identities = 68/188 (36%), Positives = 95/188 (50%), Gaps = 18/188 (9%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
             FK+VV+GD  VGK+ +L+R   +EF      TIG     +T+    + IK Q+WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGV-EELRAHADSSIRIILIGNKSDL 145
           QE YR++   YYRGA G ++VYD T R+S D +     EELR  A   + I+L+GNK DL
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 146 VDMWAVSAEDV------VEFAEDQGLF---------FSEASALN--GDNVDTAFFRLLQE 188
            D  + S E +      V                    E SA +  G NV+  F  LL++
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 189 IYALSKKE 196
           +    +K 
Sbjct: 184 LLEEIEKL 191

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  121 bits (307), Expect = 2e-35
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 2/161 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+G   VGKS +  RF   EF  +   TI  +   + + ++ +     I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           + A+   Y R   G ++VY IT R+SF+ +    E+ LR      + I+L+GNK DL + 
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             VS E+    AE+ G  F E SA    N+D  F  L++EI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  121 bits (305), Expect = 4e-35
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 4/157 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNE-FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            K+V++GD  VGKS +L+R   N+    + K      + T  +  + K  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDL 145
           E Y A+   YYR    ++ V+DI        + + +  +E+  HA+S + IIL+GNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
            D   +       FA+  G      SA  G N+D+AF
Sbjct: 122 RDA-KLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  120 bits (303), Expect = 2e-34
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 7/168 (4%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D  FK+++IGDS VGKS +L  F  +    D   TIGV+F+ + +T+  K +K  IWDTA
Sbjct: 12  DLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTA 70

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV----ARGVEELRAHADSSIRIILIGN 141
           GQER+R +TS+YYR A G ++VYD+T+R++F ++     + VE    + D     +L+GN
Sbjct: 71  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV--KMLVGN 128

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           K D      VS E+ +  A++ G  F E SA   +NV+  F  L  +I
Sbjct: 129 KVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKI 176

Length = 211

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  116 bits (292), Expect = 3e-33
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK--IIKAQIWDTAGQ 87
           KV+V+G+  VGKS ++ RF K  F  D K TIGV+F  + + +      ++  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           E + A+T AYYRGA   ++V+  T R+SF+ +    E++ A     I ++L+  K DL+D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              ++ E+    A+   L     S  +  NV T  F  L E  
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNV-TELFEYLAEKC 162

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  116 bits (292), Expect = 3e-33
 Identities = 59/159 (37%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+V+GD +VGK+ +++RF K+ F  + K+TIGV+F+     +       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLV-- 146
           ++ + S YYRGA   ++V+D+T   S +H  + +E+ L+ +  SS+ + L+G K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             +A+  +D ++ A +    +   SAL G+NV   FFR+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRV 160

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  115 bits (290), Expect = 7e-33
 Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  D   TI  +   + + I+ ++    I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY IT RQSF+ + +  E+ LR      + I+L+GNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VS E+  E A   G  F E SA    NVD AF+ L++EI
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  115 bits (290), Expect = 1e-32
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 6/158 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           KVV++G  +VGK+ ++ R+  + F     ++TIG  F  + + +  +++   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV-- 146
           RY A++  YYRGA  A+V YD+T   SF+     V+EL+ + +   +I L G KSDL+  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ-NLEEHCKIYLCGTKSDLIEQ 120

Query: 147 --DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
              +  V   DV +FA++      E S+  G NVD  F
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  114 bits (288), Expect = 2e-32
 Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  +   TI  +   + + I+ ++    I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY IT RQSF+ +A+  E+ LR      + I+L+GNK DL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VS E+  E A   G  F E SA    NVD AF+ L++EI
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  111 bits (278), Expect = 7e-31
 Identities = 58/164 (35%), Positives = 97/164 (59%), Gaps = 9/164 (5%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRF----TKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           DY+ K +++GDS VGK +IL+      T++ + ++     G++++T T+ ++ + +K Q+
Sbjct: 4   DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM----GIDYKTTTILLDGRRVKLQL 59

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDT+GQ R+  +  +Y RGA G ++VYDIT R SFD + R ++E+  HA   +  IL+GN
Sbjct: 60  WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGN 118

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           +  L     V+ E    +AE  G+ F E S L   N+  +F  L
Sbjct: 119 RLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  107 bits (268), Expect = 1e-29
 Identities = 55/169 (32%), Positives = 98/169 (57%), Gaps = 10/169 (5%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTINSKIIKAQIWDTA 85
           + KV+++GD  VGKS +++R+  N   FD++   TIGVEF  + + ++   +  QIWDTA
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTN--KFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGN 141
           GQER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GN
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 122

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
           K D+ +   VS E+   +  D G + + E SA +  NV  AF   ++ +
Sbjct: 123 KIDIPER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  105 bits (265), Expect = 5e-29
 Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 5/167 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+ +G+S VGKS I+ R+ +  F      TIG+++  + V++ +K ++   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-----SIRIILIGNKSD 144
           Y  V + +Y+   G ++VYD+T RQSF+ +   ++E++          +I +++  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
           L    AVS ++   +AE +G  + E SA  G+ V+  F  L   I  
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  104 bits (261), Expect = 2e-28
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQLNILDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y+R   G ++V+ IT  +SF  +A   E+ LR   D ++ ++L+GNK DL D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
              VS E+    AE  G+ + E SA    NVD  FF L++EI  
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  103 bits (258), Expect = 7e-28
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 4/162 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ V+G  +VGKS +  +F +  F      TI   F ++ +T   +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE--LRAHADSSIRIILIGNKSDLVD 147
           Y  +   Y  G  G ++VY +T R+SF+ V + + +  L      S+ I+L+GNKSDL  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFE-VVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VSAE+  + AE  G  F E+SA   +NV+ AF  L++EI
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  103 bits (258), Expect = 1e-27
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQ 87
            K+VV+GD A GK+ ++ RF +  F    K TIG++F +R +T+  S  +  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           +    +   Y  GA    +VYDIT  QSF+++   +  ++   + S     ++L+GNK+D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA--LSKKELE 198
           L     V+AE    FA++  +     SA  GD V   F R+  E+    LS+ ELE
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELE 176

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  101 bits (252), Expect = 4e-27
 Identities = 47/132 (35%), Positives = 86/132 (65%)

Query: 58  KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD 117
           +STIG++F ++T+ ++   ++ Q+WDTAGQER+R++  +Y R +  A+VVYDIT RQSF+
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 118 HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177
           +  + ++++       + I L+GNK+DL D+  V+ E+ ++ A++    F E SA  G N
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 178 VDTAFFRLLQEI 189
           +   F ++  ++
Sbjct: 130 IKVLFKKIAAKL 141

Length = 176

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 98.6 bits (246), Expect = 3e-26
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            +K+VV+G   VGKS +  +F ++ F  D   TI   + T+   I+ +  +  I DTAGQ
Sbjct: 2   TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLV 146
           E + A+   Y R   G ++V+ +T R SF+ V +   + LR        +IL+GNK+DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS E+  E A    + + E SA +  NVD AF  L++ I
Sbjct: 121 HQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 98.0 bits (245), Expect = 6e-26
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GD AVGK+ +L  +T N+F  +   T+  +  +  VT++ K +   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVDM 148
           Y  +    Y      ++ + +    SF++V      E++ +   ++ IIL+G K DL D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDD 119

Query: 149 WA-----------VSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        ++ E+  + A++ G   + E SAL  + +   F
Sbjct: 120 GNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 97.1 bits (242), Expect = 1e-25
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I  R+SF+ +    E+  R      + ++L+GNK DL  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VS     + A+  G+ + E SA     V+ AF+ L++EI
Sbjct: 121 -RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +N F  +   TI   ++ +   I+ +     I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + VY IT R SF+ +A   E+ LR      + +IL+GNK DL  
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
              VS  +  E A+  G+ F E SA    NVD AF+ L++EI    K+++     K
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQK 180

Length = 189

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 94.9 bits (236), Expect = 1e-24
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +N F      TI   ++   V I+ +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRK-QVEIDGRQCDLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G ++VY +T   S + +    E+ LR     ++ ++L+GNK+DL D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 148 MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
              VS ED V  ++  G   F E SA    NVD  F  L+++I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 6/165 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ V+G S VGKS +  RF    F  + +  +   + +R VTI+ + +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 90  YRAV--TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDL 145
                      R A G V+VY IT R SFD V++ ++ +R     D  I +IL+GNK+DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           +    VS E+  + A + G  F E SA  N   V   F  L +E+
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 32  VVIGDSAVGKSQILSRFTKNEFCFDSK---STIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           VV+G   VGKS +L+     E    S    +T   +       ++   +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 89  RY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS 143
            +       +     RGA   ++V D T R+S +        LR      I IIL+GNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL--LILRRLRKEGIPIILVGNKI 116

Query: 144 DLVDMWAVSAEDV-VEFAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           DL++   V       E A+  G+   E SA  G+ VD  F +L++
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 91.1 bits (226), Expect = 2e-23
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K++++GDSAVGKS+++ RF  + +     ST  +           K I    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           ++ + ++YY  A   ++V+D+T++ ++ ++++  EELR +    I  I++ NK DL D  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDL-DPS 119

Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNV 178
               +    FAE   L     SA +G NV
Sbjct: 120 VT--QKKFNFAEKHNLPLYYVSAADGTNV 146

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 3e-23
 Identities = 55/163 (33%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GD  VGK+ +  +   N F      TI   ++ + V ++ +    ++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS---IRIILIGNKSDLV 146
           Y A+   + R   G ++VY IT R +F+ V R  E+++   D S   + I+++GNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS E+    A   G  F EASA    NV+ AF+ L++ +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 90.4 bits (225), Expect = 6e-23
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
           +VV+GD AVGK+ +L  +T N F  D   T+   +    V ++ K ++  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDL---- 145
             +    Y      ++ + +    SF++V  +   E++     ++ IIL+G K DL    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDK 118

Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        V+ E     A+  G   + E SAL  + V   F
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 89.3 bits (222), Expect = 1e-22
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY     A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD- 118

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
                   + F   + L + E SA +  N +  F  L
Sbjct: 119 -RKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWL 154

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTI--NSKIIKAQIWDTA 85
           +  V+GD AVGKS ++  F  +   F      T G +   +TV +   S  ++  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSD 144
           GQE +  +    +       VVYD+T   SF++ +R +  +R H+       +L+GNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           L D   V A      A+   L F E SA  G   +  F
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI  +   + + ++ +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT +QSF+ +    E+ LR      + +IL+GNK DL D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 148 MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
              VS E+    A   G   F E SA +  NVD  F+ L+++I
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 85.7 bits (212), Expect = 3e-21
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 7/173 (4%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            +K+V++G   VGKS +  +F  + F      TI   ++T+   I+++     I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQ 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL--RAHADSSIRIILIGNKSDL 145
             + A+   Y R   G ++ Y +T R SF   A   +EL  R      I ++L+GNK DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSF-QEASEFKELITRVRLTEDIPLVLVGNKVDL 119

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
                V+ E+    A +    F E SA     +D AF  L++EI    +KE  
Sbjct: 120 EQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI---RRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF    + TIGVE        N   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY     A++++D+T R ++ +V     +L    + +I I+L GNK D+ + 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR 132

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+  V F   + L + E SA +  N +  F  L +++
Sbjct: 133 -QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++S     +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G +VVY +  +Q+F  +    ++ +R      + IIL+GNK DL  
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VS+ +    AE+ G  F E SA +   V+  F  +++++
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G V+VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A   G  F E SA    NV+  F+ L+++I
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 77.4 bits (191), Expect = 7e-18
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 17/172 (9%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDT 84
           D   K+VV+GD   GK+ +L  + +  F  +   T+  E    T+ + N KII+  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKS 143
           AGQE Y  +    Y      ++ Y +    S D+V  +   E+  H      I+L+G K+
Sbjct: 60  AGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKT 118

Query: 144 DL------------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
           DL              +  V+ E     A+  G   + E SA   +NVD  F
Sbjct: 119 DLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 48/210 (22%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF---QTRTVTINSKIIKAQIWDTAG 86
           KVV++GD  VGK+ +L R+ +  F  D+ ST+G  F   Q     I+       IWDTAG
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQWGPYNIS-------IWDTAG 53

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           +E++  + S Y RGA   ++ YD++  QS + +      L   A+      ++GNK DL 
Sbjct: 54  REQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113

Query: 147 DMWA-------------------VSAEDVVEFAE----------------DQGLFFSEAS 171
           +  A                   V+ ED   F +                ++  F  E S
Sbjct: 114 EEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF--ETS 171

Query: 172 ALNGDNVDTAFFRLLQEIYALSKKELECGN 201
           A  G NVD  F  L   +  L   +    N
Sbjct: 172 AKTGYNVDELFEYLFNLVLPLILAQRAEAN 201

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 34  IGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV 93
           +GD   GK+  + R    EF     +T+GVE        N   I+  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 94  TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA 153
              YY     A++++D+T R ++ +V     +L      +I I+L GNK D+ D   V A
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKDR-KVKA 118

Query: 154 EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           + +  F   + L + + SA +  N +  F  L +++
Sbjct: 119 KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 11/124 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK++++GD  VGK+  + R    EF      T+GVE        N   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-----SSIRIILIGNKS 143
           ++  +   YY     A++++D+T R ++ +V         H D      +I I+L+GNK 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW------HRDIVRVCENIPIVLVGNKV 123

Query: 144 DLVD 147
           D+ D
Sbjct: 124 DVKD 127

Length = 215

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V ++   +   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S+++V  + + ELR +A   + I+L+G K DL D
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ-----IWDT 84
           KVVVIGD   GKS +LS+    EF         +E Q  T+ +++  +        IWD 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEF-----PPEPLEIQGDTLAVDTLEVDGDTGLLNIWDF 55

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR--AHADSSIRIILIGNK 142
            G+E  +     + + A   ++VYD+T R+S + V+R +  L         I +IL+GNK
Sbjct: 56  GGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 69.3 bits (170), Expect = 6e-15
 Identities = 41/170 (24%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ ++GD+ +GK+ ++ ++ + EF  +   T+GV F  +T++I    I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL-VDM 148
           +  +     + A+  + ++D+T++ + + +     + R    ++I  IL+G K DL  D+
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120

Query: 149 WAVSAEDVVEFAEDQG------LFFSEASALNGDNVDTAFFRLLQEIYAL 192
                E++ + A          L F   S  +  NV   F  +L +++ L
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTS--HSINVQKIFKFVLAKVFDL 168

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 68.7 bits (168), Expect = 8e-15
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           ++VVV G   VGKS ++ RF K  F      TI   ++ + ++ +  I   QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE---ELRAHADSSIRIILIGNKSDL 145
           ++ A+           ++VY IT +QS + +    E   E++ +    I I+L+GNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
                VS+ +    A      F E SA    NV   F  LL
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 1/155 (0%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           ++VV++GDS VGKS + + FT   +   +    G +   RTV+++ +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR-AHADSSIRIILIGNKSDLVD 147
               +  +  +     V+VY +T R SF+  +    +LR A     I IIL+GNKSDLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
              VS ++    A      F E SA    NVD  F
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELF 155

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 65.7 bits (161), Expect = 9e-14
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G    GK+ IL +  K      +  TIG  F   TV    K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKL-KLGEVVTTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY    G + V D + R+  +     + +L    +     +LI  NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPG- 114

Query: 149 WAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQ 187
            A++  +++E         +       SA+ GD +D     L++
Sbjct: 115 -ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           ++V +G + VGK+ ++ RF  + F    + T+  E  ++   +    +   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           + A+     +      +VY +   +SF+ V R  EE L    D  + I+++GNK D +  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 149 WAVSAEDVVEFAE-DQGLFFSEASALNGDNVDTAFFRLLQE 188
             V A D +   E D    F EASA + +NV   F  LLQ+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQ 160

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +++VV+G S VGK+ I+SRF    F      TI  +F  +  +I  ++ +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---------HADSSIRIILI 139
            + A+           ++V+ +  R+SF+ V R  E++             +  I +++ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 140 GNKSDLVDMWAVSAEDVVEF-AEDQGLFFSEASALNGDNVDTAFFRL 185
           GNK+D      V  ++V +    D+   + E SA    N+D  F  L
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 30/174 (17%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEF-------CFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           K VV+GD AVGK+ +L  +T N F        FD+ S          V ++ K +   +W
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--------NVMVDGKPVNLGLW 54

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGN 141
           DTAGQE Y  +    Y      ++ + +    SF++V A+   E+R H   +  IIL+G 
Sbjct: 55  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGT 113

Query: 142 KSDLVD------------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
           K DL D            +  ++    +  A++ G   + E SAL    + T F
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.7 bits (155), Expect = 8e-13
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  FT  EF  +   T+   + T    ++ K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQEE 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y  A   ++ + I    S ++V  + +EE+R +   ++ +IL+G K DL   
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQE 120

Query: 146 -VDMWAVSAEDVVEFAEDQGLF-------FSEASALNGDNVDTAF 182
            V     + ++ V   + + +        + E SAL G+ VD  F
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 24/171 (14%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   +  +T  ++ + +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQT-AVDGRTVSLNLWDTAGQEE 63

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           Y  + +  Y      ++ + I    S+++V         H   ++ I+L+G K DL    
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDL---- 119

Query: 150 AVSAEDVVEFAEDQGLF------------------FSEASALNGDNVDTAF 182
             +  D ++  ++QG                    + E SALN D V   F
Sbjct: 120 -RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQE 88
           K++++G   VGK+ +  +    +F  D  ST G+  Q   +     K I+  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 89  RYRAV------TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
            Y A       + + Y      ++V+D+        V   + +++A    S  +IL+G  
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVS-PVILVGTH 115

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD 179
            D      +  + + +            S  NG  + 
Sbjct: 116 IDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T    F    V ++ K ++ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           +  +    Y      ++ + +    SF +++ + + E+R H   +  IIL+G ++DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKA-PIILVGTQADLRTD 119

Query: 148 -----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                         VS       AE  G   + E SAL   N+   F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 61.0 bits (148), Expect = 7e-12
 Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KVVV+GD A GK+ +L+ FT+  F    + T+  E     + ++   ++  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
           +  + S  Y      ++ + +    S ++V ++ + E+R H    ++++L+  K DL +
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP-GVKLVLVALKCDLRE 118

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +    E    +  TIG  F   TVT   K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIV-TTIPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
             R +   Y+      + V D   R   +     +  L    + +   +LI  NK DL  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 148 MWAVSAEDVVEFAEDQGL-----FFSEASALNGDNVDTAFFRLLQEI 189
             A+S  ++ E      L          SA+ G+ +D     L   I
Sbjct: 130 --AMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 15/166 (9%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +V+++G DSA GKS +L +    E    +  T+G  F    + +   +    +WD  GQE
Sbjct: 1   QVLLLGLDSA-GKSTLLYKLKHAEL-VTTIPTVG--FNVEMLQLEKHL-SLTVWDVGGQE 55

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           + R V   Y     G V V D +     D   + ++  L+      + ++L+ NK DL  
Sbjct: 56  KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115

Query: 148 MWAVSAEDVVE------FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
             A++AE++        +  D+  +    SA+ G+ +  AF +L  
Sbjct: 116 --ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 23/127 (18%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEF-------CFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           K+V++GDS  GK+ +L  F K+ F        F++  T   E   + + ++       +W
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFEN-YTASFEVDKQRIELS-------LW 54

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG----VEELRAHADSSIRIIL 138
           DT+G   Y  V    Y  +   ++ +DI++ ++ D V +     V E       +  ++L
Sbjct: 55  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREF----CPNTPVLL 110

Query: 139 IGNKSDL 145
           +G KSDL
Sbjct: 111 VGCKSDL 117

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.5 bits (141), Expect = 6e-11
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+++ I+  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 18/159 (11%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
           + ++G    GK+ +++     +F  D+  T+G  F  R VT  +  IK  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLV 146
           R++   Y RG    V V D   R+  + VA+   EL    +      I ++++GNK+DL 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLE-VAK--NELHDLLEKPSLEGIPLLVLGNKNDLP 114

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEA-----SALNGDNVDT 180
              A+S ++++E    + +   E      SA    N+D 
Sbjct: 115 G--ALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 18/137 (13%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG--VEFQTRTVTINSKIIKAQIWDTAG 86
           +KV+++G    GK+ IL +F   E    +  TIG  VE       I  K I+  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE-VVHTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR---AHADSSIRIILI-GNK 142
           QE  R+  + YY      ++V D T R+    + +  EEL    AH D    ++L+  NK
Sbjct: 69  QESLRSSWNTYYTNTDAVILVIDSTDRERLP-LTK--EELYKMLAHEDLRKAVLLVLANK 125

Query: 143 SDLVDMWAVSAEDVVEF 159
            DL    A++  ++ E 
Sbjct: 126 QDLKG--AMTPAEISES 140

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 30/148 (20%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD----- 83
            +V V+G   VGK+ I+ +F   EF  +   T         V ++ ++    I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 84  ----TAGQE----RYRAV--TSAYYRGALGAVVVYDITKRQSFDHVA---RGVEELRAHA 130
               TAGQE    R+R +  + A+       ++VYDI    SF +V    + + E R   
Sbjct: 61  RYPGTAGQEWMDPRFRGLRNSRAF-------ILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 131 DSSIRIILIGNKSDL-----VDMWAVSA 153
           +    I+++GNK D           +S 
Sbjct: 114 NKEPPIVVVGNKRDQQRHRFAPRHVLSV 141

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 31/167 (18%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-----NSKIIKA----- 79
           +V+V+GDS VGKS ++    K         TIG     + +T      +S  IK      
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 80  ---QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS--- 133
              ++WD +G ERY+   S +Y    G + V+D+++R++   + +   E+ A    S   
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPL 142

Query: 134 ---------IRIILIGNKSDLV--DMWAVSAEDVVEFA----EDQGL 165
                    +  I+IGNK+D+   +    S+ ++V+ A    E QGL
Sbjct: 143 GSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189

Length = 334

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 19/156 (12%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI-GVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +++++G  A GK+ IL +         S +TI  V F   TVT   K +K  +WD  GQ+
Sbjct: 11  RILMLGLDAAGKTTILYKLKLG----QSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   YY G  G + V D   R   D  AR  E  R   D  +R   +++  NK DL
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDE-AR-QELHRIINDREMRDALLLVFANKQDL 122

Query: 146 VDMWAVSAEDVVEFAE-----DQGLFFSEASALNGD 176
            D  A+   ++ E        D+  +   + A +GD
Sbjct: 123 PD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 34/185 (18%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-----KIIKAQIWDT 84
           KV+V+GDS VGKS ++    KN+   +   T+G     R  T        K    ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 85  AGQ----ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH----------- 129
            G     E  ++  + +Y    G + V+D+T ++S  ++ R   E               
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVTN 121

Query: 130 --------ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181
                   A + + +++IG K D +       E    +   +  F SE       N+D  
Sbjct: 122 GDYDSEQFAGNPVPLLVIGTKLDQI------PEAKRNWVLTRTAFLSEDFNAEEINLDCT 175

Query: 182 FFRLL 186
             RLL
Sbjct: 176 NGRLL 180

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 52.3 bits (126), Expect = 9e-09
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           ++V+IGD  VGKS ++      EF  +      +   T    +  + +   I DT+ + +
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
            RA  +A  R A    +VY + +  + + +  + +  +R      + IIL+GNKSDL D 
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDG 120

Query: 148 MWAVSAEDVV-----EFAE-DQGLFFSEASALNGDNVDTAFF 183
                 E+ +     EF E +  +   E SA    NV   F+
Sbjct: 121 SSQAGLEEEMLPIMNEFREIETCV---ECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDL--- 145
           Y  +    Y      ++ + I    S +++  +   E++ H   ++ IIL+GNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 146 ---------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                    +    V  E+    AE  G F + E SA   + V   F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H       +L+G + DL D
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TVT   K I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGE-SVTTIPTIG--FNVETVTY--KNISFTVWDVGGQDK 69

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   YY    G + V D   R   D  AR  EEL R   +  +R   I++  NK DL
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDE-AR--EELHRMLNEDELRDAVILVFANKQDL 126

Query: 146 VDMWAVSAEDVVE 158
            D  A+ A ++ E
Sbjct: 127 PD--AMKAAEITE 137

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 18/182 (9%)

Query: 14  HQQQDKMIPDKIDYVFKVVVIGDSAVGKS----QILSRFTKNEFCFDSKSTIGVEFQTRT 69
               +KMI  KI      VVIG    GK+     +  +         S  +   +  T  
Sbjct: 2   TSAANKMIETKI------VVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTV 55

Query: 70  VTINSKII-----KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE 124
                 I         ++ T GQER++ +     RGA+GA+V+ D ++  +F H    ++
Sbjct: 56  AMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIID 114

Query: 125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184
            L +     I +++  NK DL D             E   +   E  A  G+        
Sbjct: 115 FLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDV 172

Query: 185 LL 186
           LL
Sbjct: 173 LL 174

Length = 187

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GD+  GK+ +L  F K+ +      T+  E  T +  I+   I+  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK----SDL 145
           Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G K    +DL
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 146 VDMWAVSAEDVVEFAEDQG 164
             +  +S + ++    +QG
Sbjct: 122 STLRELSKQRLIPVTHEQG 140

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 11/169 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---NSKIIKAQIWDTA 85
             +V++G  + GK+ +L R   NEF  ++  T G  F T  + +   N+K +    WD  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIRIILIGNKSD 144
           GQE+ R +  +Y R   G V V D    +  +     + ++ +   +  + ++++ NK D
Sbjct: 61  GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQD 120

Query: 145 LVDMWAVSAEDVV----EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L +   VS  + +    E +         A A+ G+ +     +L + I
Sbjct: 121 LPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +  + F  +   T+   +   +VT+  K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF +V    V EL+ +A  ++  +LIG + DL D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%)

Query: 31  VVVIGDSAVGKS----QILSRFTKN-EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           V+++G    GK+    Q  ++F+KN +    SK T  V     T+ +    +    WD  
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLM--FWDLG 59

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSD 144
           GQE  R++   YY  + G + V D T R+ F+      E++  +     + ++++ NK D
Sbjct: 60  GQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQD 119

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEA-------SALNGDNVDTA 181
           L D  A+S  ++ E  +D               SAL G+ V+  
Sbjct: 120 LPD--ALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 9/120 (7%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EFQTRTVTINSKIIKAQIWDTAGQE 88
           K+V++GD   GK+ +L    K+  C+       V E  T  +    + ++  +WDT+G  
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKD--CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 72

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS---SIRIILIGNKSDL 145
            Y  V    Y  +   ++ +DI++ + FD     +++ RA       S RI+LIG K+DL
Sbjct: 73  YYDNVRPLCYSDSDAVLLCFDISRPEIFD---SALKKWRAEILDYCPSTRILLIGCKTDL 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +VV +G    GK+ IL +  ++EF      TIG   +T    +  K +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY      V V D + R         + +L    +    ++LI  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG- 114

Query: 149 WAVSAEDVVEF 159
            A+S E++ E 
Sbjct: 115 -ALSVEEMTEL 124

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 31  VVVIGDSAVGKSQILSRF-TKNEFCFDSKSTIG--VE-FQTRTVTINSKIIKAQIWDTAG 86
           ++V+G    GK+ I+++    N    +   T+G  VE F+   ++          +D +G
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSF-------TAFDMSG 54

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI---GNKS 143
           Q +YR +   YY+   G + V D + R         +E L  H D   R I I    NK 
Sbjct: 55  QGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKM 114

Query: 144 DLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQE 188
           DL D  A++A  + +        D+      +SAL G+ +D     L  +
Sbjct: 115 DLPD--ALTAVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQAQ 162

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 14/133 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG   +T    +  K +K  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   YY+   G + V D   R   + +    EEL R  ++  +R   +++  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDR---ERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Query: 146 VDMWAVSAEDVVE 158
            +  A+S  +V E
Sbjct: 131 PN--AMSTTEVTE 141

Length = 182

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   Y++   G + V D   R   D V    +EL R   +  +R   +++  NK DL
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 131 PN--AMNAAEITD 141

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TV    K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNISFTVWDVGGQDK 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSDL 145
            R +   Y++   G + V D   R   + +    EEL R   +  +R   +++  NK DL
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

Query: 146 VDMWAVSAEDVVE 158
            +  A+SA +V +
Sbjct: 114 PN--AMSAAEVTD 124

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G    GK+ IL +   +E       T G  F  + V   +   K  +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQLA-SEDISHITPTQG--FNIKNV--QADGFKLNVWDIGGQRK 71

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R     Y+      + V D   R+ F+   + + EL      + + +++  NK DL+  
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT- 130

Query: 149 WAVSAEDVVE 158
            A  AE+V E
Sbjct: 131 -AAPAEEVAE 139

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G    GK+ IL R    E    +  TIG  F   TVT   K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGE-VVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKSDL 145
            R     YY      + V D T R   D +     EL A  +        +++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDR---DRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 146 VDMWAVSAEDVVEF 159
               A+S  +V E 
Sbjct: 113 PG--ALSEAEVAEK 124

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI 136
           +K   +D  G E+ R V   Y+    G V + D    + F      ++ L    + +   
Sbjct: 63  VKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVP 122

Query: 137 ILI-GNKSDLVDMWAVSAEDVVE 158
           ILI GNK D     AVS E++ E
Sbjct: 123 ILILGNKIDKPG--AVSEEELRE 143

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 31/133 (23%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSKIIKAQIWDTAG 86
           VF   V+G    GKS +L  F    F  ++ S TI   +   TV            +  G
Sbjct: 4   VFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTV------------EVPG 51

Query: 87  QERY---RAVTSAYYRGALG---------AVVVYDITKRQSFDHVARGVEELRAH--ADS 132
           QE+Y   R V        L          A +VYD +   SF + A    E+        
Sbjct: 52  QEKYLILREVGEDEEAILLNDAELAACDVACLVYDSSDPNSFSYCA----EVYKKYFMLG 107

Query: 133 SIRIILIGNKSDL 145
            I  + +  K+DL
Sbjct: 108 EIPCLFVAAKADL 120

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
PLN03118	211	Rab family protein; Provisional	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.98
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.98
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
PTZ00099	176	rab6; Provisional	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.93
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
cd00881	189	GTP_translation_factor GTP translation factor fami	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
PRK11058	426	GTPase HflX; Provisional	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
COG1160	444	Predicted GTPases [General function prediction onl	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.87
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.86
COG2229	187	Predicted GTPase [General function prediction only	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.85
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
COG2262	411	HflX GTPases [General function prediction only]	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
COG0218	200	Predicted GTPase [General function prediction only	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
PRK04004	586	translation initiation factor IF-2; Validated	99.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
COG1084	346	Predicted GTPase [General function prediction only	99.78
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.78
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.75
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.75
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.75
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.75
CHL00071	409	tufA elongation factor Tu	99.75
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.75
COG3596	296	Predicted GTPase [General function prediction only	99.74
COG0536	369	Obg Predicted GTPase [General function prediction	99.73
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.72
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.72
PRK09866	741	hypothetical protein; Provisional	99.71
COG1163	365	DRG Predicted GTPase [General function prediction	99.71
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.7
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.69
PRK00049	396	elongation factor Tu; Reviewed	99.69
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.68
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
PRK13351	687	elongation factor G; Reviewed	99.68
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
PTZ00141	446	elongation factor 1- alpha; Provisional	99.67
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.66
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.66
PLN03127	447	Elongation factor Tu; Provisional	99.65
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.65
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.63
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.63
PRK12739	691	elongation factor G; Reviewed	99.62
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.61
KOG1145	683	consensus Mitochondrial translation initiation fac	99.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
KOG0090	238	consensus Signal recognition particle receptor, be	99.6
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
PRK00007	693	elongation factor G; Reviewed	99.58
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.58
PRK12740	668	elongation factor G; Reviewed	99.56
PRK13768	253	GTPase; Provisional	99.55
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.55
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.55
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.54
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.54
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.53
PTZ00258	390	GTP-binding protein; Provisional	99.53
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.51
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.51
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.46
PRK09601	364	GTP-binding protein YchF; Reviewed	99.46
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.45
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.44
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.44
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.43
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.42
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.42
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.41
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.41
PRK07560	731	elongation factor EF-2; Reviewed	99.4
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.39
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.36
PTZ00416	836	elongation factor 2; Provisional	99.36
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.36
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.35
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.34
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.33
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.33
KOG0410	410	consensus Predicted GTP binding protein [General f	99.33
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.32
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.31
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.31
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.28
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.25
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.23
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.22
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.22
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.21
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.21
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.16
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.15
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.15
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.15
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.13
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.13
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.07
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.07
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.06
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.06
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.03
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.02
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.99
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.99
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.98
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.97
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.95
PRK12289	352	GTPase RsgA; Reviewed	98.94
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.93
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.9
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.9
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.89
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.88
KOG2486	320	consensus Predicted GTPase [General function predi	98.88
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.87
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.86
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.84
PRK12288	347	GTPase RsgA; Reviewed	98.83
PRK00098	298	GTPase RsgA; Reviewed	98.83
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.82
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.82
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.8
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.8
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.79
COG1161	322	Predicted GTPases [General function prediction onl	98.73
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
KOG1143	591	consensus Predicted translation elongation factor	98.68
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.68
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.65
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.65
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.64
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.63
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.63
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.62
PRK14974	336	cell division protein FtsY; Provisional	98.61
PRK10416	318	signal recognition particle-docking protein FtsY;	98.59
cd03112	158	CobW_like The function of this protein family is u	98.57
PRK12289	352	GTPase RsgA; Reviewed	98.56
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.55
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.55
PRK12288	347	GTPase RsgA; Reviewed	98.54
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.54
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.52
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.49
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.49
KOG0460	449	consensus Mitochondrial translation elongation fac	98.47
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.47
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
PRK13796	365	GTPase YqeH; Provisional	98.45
PRK13796	365	GTPase YqeH; Provisional	98.44
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.38
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.38
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.38
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.38
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.38
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.38
PRK01889	356	GTPase RsgA; Reviewed	98.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.36
COG1162	301	Predicted GTPases [General function prediction onl	98.36
COG0523	323	Putative GTPases (G3E family) [General function pr	98.3
cd03110	179	Fer4_NifH_child This protein family's function is	98.29
cd03114	148	ArgK-like The function of this protein family is u	98.28
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.28
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.24
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.23
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.22
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.18
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.18
PRK00098	298	GTPase RsgA; Reviewed	98.18
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.18
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.17
COG3523	1188	IcmF Type VI protein secretion system component Va	98.15
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.14
KOG2484	435	consensus GTPase [General function prediction only	98.12
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.12
PRK10867	433	signal recognition particle protein; Provisional	98.1
TIGR00959	428	ffh signal recognition particle protein. This mode	98.09
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.06
COG1162	301	Predicted GTPases [General function prediction onl	98.06
PRK13695	174	putative NTPase; Provisional	98.05
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.03
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.03
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.01
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.99
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.99
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.98
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.95
cd03111	106	CpaE_like This protein family consists of proteins	97.94
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.91
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.9
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.9
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.83
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.81
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.81
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.81
KOG1533	290	consensus Predicted GTPase [General function predi	97.8
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.79
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.71
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.7
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.7
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.69
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.65
cd02036	179	MinD Bacterial cell division requires the formatio	97.63
PRK07261	171	topology modulation protein; Provisional	97.63
PRK08118	167	topology modulation protein; Reviewed	97.62
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.61
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.6
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.58
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.58
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.58
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.57
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.52
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.52
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.51
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.51
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.48
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.47
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.45
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.44
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.43
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.43
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.4
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.39
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.39
PRK06217	183	hypothetical protein; Validated	97.37
PRK01889	356	GTPase RsgA; Reviewed	97.36
CHL00072	290	chlL photochlorophyllide reductase subunit L	97.33
PRK03839	180	putative kinase; Provisional	97.33
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.3
PRK14737	186	gmk guanylate kinase; Provisional	97.3
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.3
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.29
smart00382	148	AAA ATPases associated with a variety of cellular	97.28
PF00004	132	AAA: ATPase family associated with various cellula	97.28
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.28
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.28
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.27
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.27
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.26
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.26
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.26
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.25
PRK14530	215	adenylate kinase; Provisional	97.25
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.24
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.23
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.23
PRK05480	209	uridine/cytidine kinase; Provisional	97.23
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.23
PRK14738	206	gmk guanylate kinase; Provisional	97.22
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.22
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.2
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.2
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.2
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.2
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.19
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.19
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.19
PRK14531	183	adenylate kinase; Provisional	97.19
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.19
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.18
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.17
PRK14532	188	adenylate kinase; Provisional	97.17

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-41  Score=232.29  Aligned_cols=173  Identities=47%  Similarity=0.772  Sum_probs=165.9

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      ....++.+||+|+|.+|+|||+|+.++.++.+...+..|.|+++..+.+.++++.+++++|||+|+++|+++...|++++
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDT  180 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~  180 (203)
                      +++|+|||+++.+||..+..|+.++.+....++|.++|+||+|+.+.+.++.++++.|+..++++ ++++||+++.|+++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 048709          181 AFFRLLQEIYALSK  194 (203)
Q Consensus       181 ~~~~i~~~~~~~~~  194 (203)
                      .|..|...+.....
T Consensus       163 ~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  163 AFLTLAKELKQRKG  176 (205)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999988876433

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-39  Score=223.91  Aligned_cols=170  Identities=45%  Similarity=0.724  Sum_probs=162.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+++|..++|||||+-++..+.+.....+|.+..+.++.+.+++..+++.||||+|+++|+++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35699999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||+++.+||..++.|+..+.+...+++-+.+++||+|+.+.+++..+++..++...+..++++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 048709          186 LQEIYALSKK  195 (203)
Q Consensus       186 ~~~~~~~~~~  195 (203)
                      .+.++.....
T Consensus       163 a~~lp~~~~~  172 (200)
T KOG0092|consen  163 AEKLPCSDPQ  172 (200)
T ss_pred             HHhccCcccc
Confidence            9999875443

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-38  Score=221.99  Aligned_cols=170  Identities=43%  Similarity=0.741  Sum_probs=164.7

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      .+.+..+||+++|.+|||||+++.++....+...+..|.++++..+++..++..+.+++|||+|+++|+.+...|+++++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|||+++..||+++..|+..+.......+|.++|+||+|+..+++++.+...++|..+|++++++||++|.||.+.|
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            99999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      ..+.+.+...
T Consensus       167 ~~La~~i~~k  176 (207)
T KOG0078|consen  167 LSLARDILQK  176 (207)
T ss_pred             HHHHHHHHhh
Confidence            9999998853

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5.5e-37  Score=223.49  Aligned_cols=164  Identities=41%  Similarity=0.722  Sum_probs=151.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +.|+++|..|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888889888888888889999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++++|+.+..|+..+......++|+++|+||+|+...+++..++..+++... ++.+++|||++|.||+++|+++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887766678999999999999877788888898898875 789999999999999999999999


Q ss_pred             HHHHh
Q 048709          188 EIYAL  192 (203)
Q Consensus       188 ~~~~~  192 (203)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-37  Score=213.27  Aligned_cols=170  Identities=51%  Similarity=0.795  Sum_probs=163.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      +.+.+|++++|..|+|||+|+.+++...+.+.++.|.++++-.+.++++++.+++++|||+|++.|+++...|++++-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|||++..++|..+..|+..+.....+++.+++++||+|+...+.+..+|..+||++++..++++||+++.|+++.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      +...+++.-+
T Consensus       163 ta~~Iy~~~q  172 (216)
T KOG0098|consen  163 TAKEIYRKIQ  172 (216)
T ss_pred             HHHHHHHHHH
Confidence            9999988544

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.3e-36  Score=219.64  Aligned_cols=167  Identities=34%  Similarity=0.595  Sum_probs=153.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..+||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999998888777788888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||++++.+|+.+..|+..+.... ++.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||+++|+++
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999997654 689999999999998777888999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048709          186 LQEIYALS  193 (203)
Q Consensus       186 ~~~~~~~~  193 (203)
                      ++.+....
T Consensus       163 ~~~i~~~~  170 (189)
T cd04121         163 ARIVLMRH  170 (189)
T ss_pred             HHHHHHhc
Confidence            99887643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=209.46  Aligned_cols=169  Identities=39%  Similarity=0.634  Sum_probs=161.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....+||+++|.+|+|||||+.++....+++..+.|.++++..+.+.++++.+++-+|||+|+++|+.+.+.|++++.+
T Consensus         7 ~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG   86 (209)
T KOG0080|consen    7 GYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG   86 (209)
T ss_pred             CcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence            34567999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      +|+|||++.+++|..+..|+.++.-++. +++-.++|+||+|..+.+.+..+|..+|++.+++.|++|||++.+|+...|
T Consensus        87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence            9999999999999999999999988887 778889999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      +.++++|.+-
T Consensus       167 eelveKIi~t  176 (209)
T KOG0080|consen  167 EELVEKIIET  176 (209)
T ss_pred             HHHHHHHhcC
Confidence            9999999873

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-37  Score=214.75  Aligned_cols=168  Identities=36%  Similarity=0.631  Sum_probs=160.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|..++||||||++++...++..|.+|.|+++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||+++..||++..+|++.+.+..+. ++-+++|+||.|+.+.+++..+|....++++++.|+++||+.|.||..+|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            99999999999999999999988885 58899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 048709          186 LQEIYALSK  194 (203)
Q Consensus       186 ~~~~~~~~~  194 (203)
                      ...+.+...
T Consensus       181 aa~l~~~~~  189 (221)
T KOG0094|consen  181 AAALPGMEV  189 (221)
T ss_pred             HHhccCccc
Confidence            988887654

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.1e-35  Score=209.93  Aligned_cols=164  Identities=48%  Similarity=0.822  Sum_probs=150.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999998888878888888777788888899999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|+.++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887766678999999999999887778888999999999999999999999999999999998


Q ss_pred             HHHH
Q 048709          188 EIYA  191 (203)
Q Consensus       188 ~~~~  191 (203)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=3.5e-35  Score=209.01  Aligned_cols=165  Identities=45%  Similarity=0.772  Sum_probs=151.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|++|+|||||++++.+.++...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            56999999999999999999999999988888898888887888888888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||+++++++..+..|+..+.+....+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999998877667899999999999987667788888899999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          187 QEIYA  191 (203)
Q Consensus       187 ~~~~~  191 (203)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-36  Score=210.16  Aligned_cols=172  Identities=65%  Similarity=1.017  Sum_probs=165.8

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      +...++.+||+++|.+++|||-|+.++...++.....+|.++++.+..+.++++.++.+||||+|+++|+....+|++++
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      .++++|||++...+|+.+.+|+.+++.....++++++|+||+|+...+.++.++.+.++...+..++++||.++.|+++.
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048709          182 FFRLLQEIYALS  193 (203)
Q Consensus       182 ~~~i~~~~~~~~  193 (203)
                      |..++..|+...
T Consensus       168 F~~~l~~I~~~v  179 (222)
T KOG0087|consen  168 FERVLTEIYKIV  179 (222)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=6.8e-35  Score=213.38  Aligned_cols=166  Identities=36%  Similarity=0.649  Sum_probs=149.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+++|.+|||||||+++|.++.+...+.+|.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888888888887778887 7889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHA----DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAF  182 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~  182 (203)
                      ||++++++++.+..|+..+....    ..++|+++|+||+|+...+.+..+++.+++...+ .+++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988776532    2678999999999997656788899999999998 689999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 048709          183 FRLLQEIYALSK  194 (203)
Q Consensus       183 ~~i~~~~~~~~~  194 (203)
                      +++++.+....+
T Consensus       161 ~~l~~~l~~~~~  172 (201)
T cd04107         161 RFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHhch
Confidence            999999987654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=7.3e-35  Score=208.20  Aligned_cols=164  Identities=29%  Similarity=0.413  Sum_probs=146.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877777776444 34567788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..++..++++..++++++|||++|.||+++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999988877766533 6799999999999987777888899999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      +.+...
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            888763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.4e-34  Score=205.54  Aligned_cols=163  Identities=43%  Similarity=0.691  Sum_probs=148.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||+++|.+.++...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888788887777777777888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++++++.+..|+..+........|+++|+||+|+.+.+....++..+++...+++++++||++|.|++++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999877665688999999999998766677888888988899999999999999999999999987


Q ss_pred             HHH
Q 048709          189 IYA  191 (203)
Q Consensus       189 ~~~  191 (203)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-35  Score=196.50  Aligned_cols=178  Identities=40%  Similarity=0.660  Sum_probs=166.1

Q ss_pred             CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR   99 (203)
Q Consensus        20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   99 (203)
                      ..++.-+..+|++++|...+|||||+.++.+..+.+...+|.|+++..+++....+.+++++|||+|++.|+.+..+|++
T Consensus        13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR   92 (193)
T KOG0093|consen   13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR   92 (193)
T ss_pred             cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence            34455567899999999999999999999999999999999999999999888888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      +++++|++||+++.+||..+..|.-.+...+..+.|+|+++||||+.+++.++.+..+.++...|..+|++||+.+.|++
T Consensus        93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk  172 (193)
T KOG0093|consen   93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK  172 (193)
T ss_pred             ccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc
Q 048709          180 TAFFRLLQEIYALSKKEL  197 (203)
Q Consensus       180 ~~~~~i~~~~~~~~~~~~  197 (203)
                      ++|+.++..|-+.....+
T Consensus       173 ~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  173 QVFERLVDIICDKMSESL  190 (193)
T ss_pred             HHHHHHHHHHHHHhhhhh
Confidence            999999999877654433

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.4e-34  Score=214.30  Aligned_cols=169  Identities=22%  Similarity=0.348  Sum_probs=149.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....+||+++|.+|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+.+.|++++|+
T Consensus         9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~   87 (232)
T cd04174           9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA   87 (232)
T ss_pred             CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence            3456799999999999999999999999998888888876654 457788999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEE
Q 048709          104 AVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSE  169 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  169 (203)
                      +++|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+..            .+.+..+++.+++...++ .|++
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E  166 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE  166 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999984 78998887655 5789999999999864            256889999999999998 6999


Q ss_pred             EecCCCC-CHHHHHHHHHHHHHHhhc
Q 048709          170 ASALNGD-NVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       170 ~sa~~~~-~i~~~~~~i~~~~~~~~~  194 (203)
                      |||++|. ||+++|..++..+.+...
T Consensus       167 tSAktg~~~V~e~F~~~~~~~~~~~~  192 (232)
T cd04174         167 CSAFTSEKSIHSIFRSASLLCLNKLS  192 (232)
T ss_pred             ccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence            9999997 899999999998876433

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=7.1e-35  Score=209.52  Aligned_cols=163  Identities=28%  Similarity=0.447  Sum_probs=145.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888888887555 456778999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.++++..++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 78998887765 6799999999999864            245889999999999995 899999


Q ss_pred             cCCCCC-HHHHHHHHHHHHH
Q 048709          172 ALNGDN-VDTAFFRLLQEIY  190 (203)
Q Consensus       172 a~~~~~-i~~~~~~i~~~~~  190 (203)
                      |++|.| |+++|..+++.+.
T Consensus       161 Ak~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         161 ALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            999998 9999999998644

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.5e-34  Score=205.54  Aligned_cols=163  Identities=46%  Similarity=0.779  Sum_probs=149.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988888778888888888888888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..++...+++++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999987766577999999999999877678888999999999999999999999999999999998


Q ss_pred             HHH
Q 048709          188 EIY  190 (203)
Q Consensus       188 ~~~  190 (203)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            774

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1e-34  Score=205.38  Aligned_cols=160  Identities=41%  Similarity=0.692  Sum_probs=147.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888888788888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++++++.+..|+..+......+.|+++|+||.|+...+.+..++...+++..++++++|||++|.|++++|.+|.+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877665679999999999998777788899999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=203.26  Aligned_cols=170  Identities=32%  Similarity=0.588  Sum_probs=157.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|.+|+|||||+|++.+.++...+..|.+.++.++.+.+++..+.+++|||+|+++|.++--.+++++|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHHcC-CeEEEEecCCCCC
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDM--WAVSAEDVVEFAEDQG-LFFSEASALNGDN  177 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~  177 (203)
                      ++|||++++.+|+.+..|..++.....    ..-|+|+++||+|+.+.  ++++...++++|...+ +|||++|||.+.|
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            999999999999999999999877765    34789999999999763  7899999999998765 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 048709          178 VDTAFFRLLQEIYALSK  194 (203)
Q Consensus       178 i~~~~~~i~~~~~~~~~  194 (203)
                      |.+.|+.+.+..+..+.
T Consensus       166 V~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  166 VDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999998887554

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.8e-34  Score=203.83  Aligned_cols=163  Identities=66%  Similarity=1.024  Sum_probs=149.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||++++.++..+..|+..+......++|+++|+||.|+...+....++...++...+++++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999998877666799999999999987667788889999988899999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            865

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.6e-34  Score=204.29  Aligned_cols=162  Identities=31%  Similarity=0.582  Sum_probs=148.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||+++|+++++...+.++.+.++....+..++..+.+++|||||++.+..++..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888889888888888888889999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      |++++.+++.+..|+..+.+...     .+.|+++|+||+|+.+......++...++...+++++++||++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999998877654     4689999999999976556778888888888899999999999999999999


Q ss_pred             HHHHHHH
Q 048709          184 RLLQEIY  190 (203)
Q Consensus       184 ~i~~~~~  190 (203)
                      +|++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.6e-34  Score=206.79  Aligned_cols=165  Identities=39%  Similarity=0.666  Sum_probs=148.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------CEEEEEEEEeCCCchhhhhhhHh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------SKIIKAQIWDTAGQERYRAVTSA   96 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~   96 (203)
                      +.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.          +..+.+.+|||||++.+..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999988888888887776666554          45688999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG  175 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  175 (203)
                      +++++|++++|||+++++++..+..|+..+..... ++.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            99999999999999999999999999988876543 67899999999999876678888999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEIYA  191 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~  191 (203)
                      .|++++|+++++.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.3e-34  Score=206.96  Aligned_cols=160  Identities=32%  Similarity=0.503  Sum_probs=143.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887655 455678899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCccc----------CCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709          109 DITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDMW----------AVSAEDVVEFAEDQGL-FFSEASALNGD  176 (203)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~  176 (203)
                      |++++++|+.+ ..|+..+.... .+.|+++|+||+|+.+.+          .+..++..+++...++ ++++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999887654 579999999999996542          4788899999999998 59999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEIY  190 (203)
Q Consensus       177 ~i~~~~~~i~~~~~  190 (203)
                      ||+++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=6e-34  Score=202.81  Aligned_cols=166  Identities=49%  Similarity=0.811  Sum_probs=151.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999999988887788888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|++++.++..+..|+..+.....++.|+++|+||.|+.+...+..+++..++...+++++++||+++.|++++|.++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999998766778888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          186 LQEIYA  191 (203)
Q Consensus       186 ~~~~~~  191 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.1e-34  Score=210.28  Aligned_cols=169  Identities=64%  Similarity=0.990  Sum_probs=155.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            34679999999999999999999999998877778888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999877778888899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      +++.+....
T Consensus       169 l~~~i~~~~  177 (216)
T PLN03110        169 ILLEIYHII  177 (216)
T ss_pred             HHHHHHHHh
Confidence            999997743

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.7e-34  Score=202.62  Aligned_cols=161  Identities=39%  Similarity=0.686  Sum_probs=153.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+..+...++.++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998888998899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ++++++++.+..|+..+........|+++++||.|+.+.++++.+++.+++..++.+++++||+++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988876799999999999988789999999999999999999999999999999999999987


Q ss_pred             H
Q 048709          190 Y  190 (203)
Q Consensus       190 ~  190 (203)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-35  Score=195.33  Aligned_cols=172  Identities=46%  Similarity=0.749  Sum_probs=163.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG  100 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  100 (203)
                      +....++.+|++++|+.|+|||+|+.++...++.....+|.++++..+.+.+.++.+++++|||+|+++|+++.+.|+++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            44567889999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      +.+.++|||++++++|+.+..|+........+++.+++++||.|+.++++++..+.-.|+++..+.+.++|+++|+|+++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048709          181 AFFRLLQEIYAL  192 (203)
Q Consensus       181 ~~~~i~~~~~~~  192 (203)
                      .|-...+.|...
T Consensus       162 aFl~c~~tIl~k  173 (214)
T KOG0086|consen  162 AFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHH
Confidence            998888877653

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=196.14  Aligned_cols=168  Identities=44%  Similarity=0.725  Sum_probs=159.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .++.++.+++|.+|+|||+|+-++....+..+|..|.+.++..+++.++|..++++||||+|++.|+.+...|+++.+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|||+++.+||.+.++|++.+...+ +.+|-++|+||.|.++.+.+..+++..|+...++.+|++|++++.|++..|.-
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            99999999999999999999998877 47888999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      |.+......
T Consensus       164 it~qvl~~k  172 (198)
T KOG0079|consen  164 ITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHH
Confidence            988877654

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=9.2e-34  Score=207.04  Aligned_cols=169  Identities=43%  Similarity=0.682  Sum_probs=152.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..++|+|+|++|+|||||++++.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999999988777788888888788888888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||++++++++.+..|+..+.... ...|+++|+||+|+.....+..++...++...+++++++||++|.|++++|++|
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999999999876644 678999999999998766677888889999999999999999999999999999


Q ss_pred             HHHHHHhhcc
Q 048709          186 LQEIYALSKK  195 (203)
Q Consensus       186 ~~~~~~~~~~  195 (203)
                      ++.+....+.
T Consensus       163 ~~~~~~~~~~  172 (199)
T cd04110         163 TELVLRAKKD  172 (199)
T ss_pred             HHHHHHhhhc
Confidence            9999875443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.1e-34  Score=205.74  Aligned_cols=160  Identities=26%  Similarity=0.440  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++++||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            7999999999999999999999999888878876655 356778899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++..+++...++ +|++|||++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            99999999996 78998887765 5789999999999864            235888999999999997 799999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q 048709          175 GDN-VDTAFFRLLQEIY  190 (203)
Q Consensus       175 ~~~-i~~~~~~i~~~~~  190 (203)
                      |.+ |+++|..+++...
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998644

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=6.8e-34  Score=206.52  Aligned_cols=165  Identities=41%  Similarity=0.672  Sum_probs=148.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+++|.+|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 4567777777777778888899999999999999999899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||++++++++.+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988877678999999999999766677788888999999999999999999999999999999


Q ss_pred             HHHHhh
Q 048709          188 EIYALS  193 (203)
Q Consensus       188 ~~~~~~  193 (203)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=5.5e-34  Score=205.21  Aligned_cols=165  Identities=23%  Similarity=0.418  Sum_probs=144.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|..|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899988888888888999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-----cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-----WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      |++++++++.+..|+..+........| ++|+||+|+...     .....++..+++...++++++|||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999988776555667 678999998531     11224567788888899999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      ++.+.+.+...
T Consensus       160 ~l~~~l~~~~~  170 (182)
T cd04128         160 IVLAKAFDLPL  170 (182)
T ss_pred             HHHHHHHhcCC
Confidence            99998877443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=8.4e-34  Score=201.48  Aligned_cols=162  Identities=43%  Similarity=0.739  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887777888888888888888888899999999999999989999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||+++++++..+..|+..+......++|+++|+||+|+.+.+.+..+++.++++..+. .++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999998876667899999999999987767778888889888875 68999999999999999999


Q ss_pred             HHH
Q 048709          186 LQE  188 (203)
Q Consensus       186 ~~~  188 (203)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.2e-33  Score=204.73  Aligned_cols=164  Identities=45%  Similarity=0.706  Sum_probs=150.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988777788888887788888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |+++++++..+..|+..+........|+++++||+|+.+...+..++...++...+++++++||++|.|++++|+++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766678999999999998766778888888988889999999999999999999999999


Q ss_pred             HHHh
Q 048709          189 IYAL  192 (203)
Q Consensus       189 ~~~~  192 (203)
                      +...
T Consensus       161 ~~~~  164 (188)
T cd04125         161 IIKR  164 (188)
T ss_pred             HHHH
Confidence            8763

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=5e-34  Score=202.02  Aligned_cols=160  Identities=33%  Similarity=0.499  Sum_probs=141.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777766665 445566778888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++.+++++||++|.|+.++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888876544 67999999999999766567777788888888899999999999999999999987


Q ss_pred             HH
Q 048709          188 EI  189 (203)
Q Consensus       188 ~~  189 (203)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.1e-33  Score=200.04  Aligned_cols=160  Identities=49%  Similarity=0.821  Sum_probs=147.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+......+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888788888888888888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |+++++++..+..|+..+.....+++|+++++||+|+...+.+..+++..++...+++++++||+++.|+.++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766889999999999998766788889999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.1e-33  Score=208.88  Aligned_cols=164  Identities=34%  Similarity=0.533  Sum_probs=148.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+++|.+|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889998888888887754 578999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ||++++++++.+..|+..+.+...   .+.|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999998877643   35789999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      +++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.1e-33  Score=205.37  Aligned_cols=163  Identities=26%  Similarity=0.444  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|..|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.|..+++.|++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888878876544 34566788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcC-CeEEEEecC
Q 048709          108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQG-LFFSEASAL  173 (203)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~  173 (203)
                      ||++++.+|+.+. .|+..+.... .++|+++|+||.|+.+..            .+..++..+++...+ +++++|||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999996 5877666543 579999999999996532            356778889999888 589999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|.||+++|+++++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=205.05  Aligned_cols=165  Identities=36%  Similarity=0.528  Sum_probs=146.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999988777777766544 4566788888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++++++.+..|+..+.+... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+.++|.++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999988876644 688999999999997766677788888888889999999999999999999999


Q ss_pred             HHHHHHh
Q 048709          186 LQEIYAL  192 (203)
Q Consensus       186 ~~~~~~~  192 (203)
                      ++.+...
T Consensus       163 ~~~l~~~  169 (189)
T PTZ00369        163 VREIRKY  169 (189)
T ss_pred             HHHHHHH
Confidence            9988765

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=9.7e-34  Score=200.92  Aligned_cols=162  Identities=31%  Similarity=0.495  Sum_probs=142.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      ++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887776767765443 45677788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..++..++++..+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999888876543 7899999999999987666777778888888899999999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8664

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.3e-33  Score=204.97  Aligned_cols=169  Identities=32%  Similarity=0.479  Sum_probs=146.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777777766444 3455678888899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ++++++++.+..|+..+.....   .+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888766542   5789999999999977667778888888888899999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 048709          187 QEIYALSKKELEC  199 (203)
Q Consensus       187 ~~~~~~~~~~~~~  199 (203)
                      +.+........++
T Consensus       160 ~~l~~~~~~~~~~  172 (190)
T cd04144         160 RALRQQRQGGQGP  172 (190)
T ss_pred             HHHHHhhcccCCC
Confidence            9887765544333

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.7e-33  Score=207.20  Aligned_cols=167  Identities=47%  Similarity=0.751  Sum_probs=150.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      .+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..+...+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999999988888788888887777776 4677899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++++++.+..|+..+..... ...|+++|+||+|+.+.+.+..++..++++..+++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998876654 467889999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 048709          186 LQEIYALSK  194 (203)
Q Consensus       186 ~~~~~~~~~  194 (203)
                      .+.+.+..+
T Consensus       162 ~~~~~~~~~  170 (211)
T cd04111         162 TQEIYERIK  170 (211)
T ss_pred             HHHHHHHhh
Confidence            998877544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.2e-33  Score=207.64  Aligned_cols=165  Identities=30%  Similarity=0.482  Sum_probs=147.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56799999999999999999999999988888899888888878878888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .++...++++++|||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999887654 67999999999998643 4445555 7788888999999999999999999999


Q ss_pred             HHHHHHhh
Q 048709          186 LQEIYALS  193 (203)
Q Consensus       186 ~~~~~~~~  193 (203)
                      ++.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99987643

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=3.9e-33  Score=197.57  Aligned_cols=163  Identities=54%  Similarity=0.858  Sum_probs=149.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777788888888888888888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++.+++.+..|+..+......++|+++++||+|+........+.+.+++...+++++++|+++|.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999998887766789999999999997766778888999999999999999999999999999999988


Q ss_pred             HHH
Q 048709          189 IYA  191 (203)
Q Consensus       189 ~~~  191 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.9e-33  Score=198.89  Aligned_cols=163  Identities=37%  Similarity=0.636  Sum_probs=144.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+++|||||++.|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888888888888989999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +++++++..+..|+..+.+... ...|+++|+||+|+.....  ...++...++...+.+++++||++|.|++++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999988765443 4578999999999865432  345667788888889999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      +.+.+.
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            988654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.2e-33  Score=203.81  Aligned_cols=167  Identities=50%  Similarity=0.823  Sum_probs=152.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      .+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            35699999999999999999999999888877788888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||++++.++..+..|+..+........|+++++||+|+...+.+..++..+++...+++++++||+++.|++++|+++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999888776666789999999999998777788889999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048709          186 LQEIYAL  192 (203)
Q Consensus       186 ~~~~~~~  192 (203)
                      ++.+...
T Consensus       164 ~~~~~~~  170 (210)
T PLN03108        164 AAKIYKK  170 (210)
T ss_pred             HHHHHHH
Confidence            9988764

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=4.2e-33  Score=197.14  Aligned_cols=159  Identities=35%  Similarity=0.584  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +||+++|.+|+|||||+++++++.+...+.++.+.++....+.+.  +..+.+++|||||++.+..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998887777888877766666666  778899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||+++++++..+..|+..+.... .++|+++|+||+|+..+..+..+++..++...+++++++||++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999988876544 6799999999999987667788889999999999999999999999999999987


Q ss_pred             HH
Q 048709          187 QE  188 (203)
Q Consensus       187 ~~  188 (203)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7.8e-33  Score=195.98  Aligned_cols=162  Identities=48%  Similarity=0.791  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|++|||||||++++.++++.....++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998876778888778788888899999999999999999998889999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      +|+++++++..+..|+..+........|+++++||+|+........++...++...+++++++||++|.|+.++|+++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988776678999999999999866667888888999999999999999999999999999998


Q ss_pred             HH
Q 048709          188 EI  189 (203)
Q Consensus       188 ~~  189 (203)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.7e-33  Score=200.57  Aligned_cols=160  Identities=28%  Similarity=0.405  Sum_probs=138.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|+|||||++++..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999988778788765553 4566788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEecC
Q 048709          108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEASAL  173 (203)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~  173 (203)
                      ||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.            +.+..+++.++++..+ +.+++|||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999996 5887776544 57999999999998643            4577788888988887 689999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEI  189 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~  189 (203)
                      +|.|++++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.4e-34  Score=192.68  Aligned_cols=170  Identities=44%  Similarity=0.729  Sum_probs=157.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+.++++|+|.+-+|||+|++.++.+++..-.+||.++++..+-+.+ +|..+++++|||+|+++|+++...|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35799999999999999999999999999999999999998877766 68899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CC-CcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SS-IRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++|||+++.+||+.+..|+.+...... +. +-+.+|++|+|+..+++++.+|..+++..+++.++++|+++|.||++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999998877765 44 5578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc
Q 048709          183 FRLLQEIYALSKK  195 (203)
Q Consensus       183 ~~i~~~~~~~~~~  195 (203)
                      .-+.+.+....++
T Consensus       166 ~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  166 DMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876554

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.7e-33  Score=197.71  Aligned_cols=161  Identities=29%  Similarity=0.478  Sum_probs=141.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      ++||+++|.+|+|||||++++..+.+...+.++.+ .+....+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988877766654 45556777888888999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||++++.++..+..|+..+.+... .++|+++|+||+|+.....+..++...++...+++++++||++|.|+.++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888877644 6899999999999976556666777888888889999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=9.2e-33  Score=197.01  Aligned_cols=162  Identities=33%  Similarity=0.602  Sum_probs=144.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999999988877788887777778888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDT  180 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~  180 (203)
                      +|||++++++++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++...+ .+++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999887765432    568999999999986 34677888999998887 4899999999999999


Q ss_pred             HHHHHHHH
Q 048709          181 AFFRLLQE  188 (203)
Q Consensus       181 ~~~~i~~~  188 (203)
                      +|+++++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=7.3e-33  Score=195.72  Aligned_cols=160  Identities=39%  Similarity=0.673  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||++++++.++...+.++.+.++....+.+++..+++.+|||||+..+..+...+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++++++.+..|+..+......+.|+++++||+|+.+......++...++...+++++++||+++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998877655679999999999997666677888888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.2e-33  Score=197.20  Aligned_cols=160  Identities=31%  Similarity=0.545  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777788877777777777888899999999999999988899999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |+++++++..+..|+..+.+... ++|+++|+||+|+.+. ... .+..+++....++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999887664 8999999999999742 333 34556777788899999999999999999999998


Q ss_pred             HHH
Q 048709          189 IYA  191 (203)
Q Consensus       189 ~~~  191 (203)
                      +.+
T Consensus       158 ~~~  160 (166)
T cd00877         158 LLG  160 (166)
T ss_pred             HHh
Confidence            865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6e-33  Score=196.78  Aligned_cols=161  Identities=37%  Similarity=0.561  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888777766654 334456667888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++++++.+..|+..+.+... .+.|+++|+||+|+...+....+++..++...+++++++||++|.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999998888766544 57899999999999876667777888888888999999999999999999999998


Q ss_pred             HHH
Q 048709          188 EIY  190 (203)
Q Consensus       188 ~~~  190 (203)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.1e-32  Score=196.68  Aligned_cols=162  Identities=40%  Similarity=0.664  Sum_probs=145.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~  106 (203)
                      .+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999998887777888888888888889989999999999998886 578889999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAF  182 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~  182 (203)
                      |||++++.++..+..|+..+..... .++|+++|+||+|+.+.+++..++..+++....+++++|||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999988877654 6799999999999988777888889999999999999999999   89999999


Q ss_pred             HHHHHHH
Q 048709          183 FRLLQEI  189 (203)
Q Consensus       183 ~~i~~~~  189 (203)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.3e-32  Score=194.58  Aligned_cols=160  Identities=31%  Similarity=0.517  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||++++.+..+.+.+.++.+.+.......+++..+.+.+|||+|++.|..++..+++++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988777677766766667778888999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++.++..+..|+..+.... .+.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998886543 57899999999998542   2345566777788999999999999999999999988


Q ss_pred             HHHh
Q 048709          189 IYAL  192 (203)
Q Consensus       189 ~~~~  192 (203)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            8764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=8.9e-33  Score=203.53  Aligned_cols=159  Identities=33%  Similarity=0.508  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||++++..+++.. +.++.+.++....+    ..+.+.+|||+|++.|..+...+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 45666665544332    4578999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc-------------------ccCCCHHHHHHHHHHcC-----
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD-------------------MWAVSAEDVVEFAEDQG-----  164 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  164 (203)
                      |++++++|+.+..|+..+.+....++|+++|+||+|+.+                   .+++..+++..++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888887766557799999999999975                   46788999999998876     


Q ss_pred             ---------CeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          165 ---------LFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       165 ---------~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                               ++|++|||++|.||+++|..+++.+.+.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                     6899999999999999999999988864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1e-32  Score=195.94  Aligned_cols=159  Identities=29%  Similarity=0.393  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||+++++++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..+...+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777766665433 445566778889999999999999998889999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |++++++++.+..|+..+.....   .++|+++|+||+|+...+.+..++...++..+++++++|||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999988877765432   579999999999997766777788888888889999999999999999999999


Q ss_pred             HHH
Q 048709          186 LQE  188 (203)
Q Consensus       186 ~~~  188 (203)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.4e-32  Score=194.18  Aligned_cols=160  Identities=33%  Similarity=0.533  Sum_probs=139.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            3799999999999999999999998877776776544 345567788888899999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||+++..+++.+..|+..+.+... .+.|+++|+||+|+.+ +....+++.+++...+++++++||++|.|++++|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999889888877654 6799999999999976 35667788888888899999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.4e-32  Score=194.77  Aligned_cols=161  Identities=34%  Similarity=0.490  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4899999999999999999999988766666665533 345566788888999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +|++++.+++.+..|+..+.+... .+.|+++++||+|+...+.+..++..+++...+++++++||++|.|++++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 6789999999999987666677788888888889999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-33  Score=187.35  Aligned_cols=169  Identities=40%  Similarity=0.672  Sum_probs=159.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|..|+|||+|+++++.+-+++....|.++++-.+++.+++..+++++|||+|+++|++....|++.++++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|||++=..+|+-+.+|+.++..+...++.-|+|+||+|+.+.++++.+-..+|+......++++||++..|++.+|..
T Consensus        84 ilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            99999999999999999999999999888889999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      +...+....
T Consensus       164 ~a~rli~~a  172 (213)
T KOG0095|consen  164 LACRLISEA  172 (213)
T ss_pred             HHHHHHHHH
Confidence            887776543

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.2e-32  Score=201.56  Aligned_cols=164  Identities=23%  Similarity=0.384  Sum_probs=141.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|.+|+|||||++++..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.|..+.+.++.++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888888876554 56778899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++++|+.+. .|...+.. ..++.|+++|+||+|+.+.            ..+..++...++...++ +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999995 56655544 3478999999999998642            13677889999999995 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHHhhc
Q 048709          175 GDN-VDTAFFRLLQEIYALSK  194 (203)
Q Consensus       175 ~~~-i~~~~~~i~~~~~~~~~  194 (203)
                      +.+ |+++|..++........
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            885 99999999998766433

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.6e-32  Score=195.35  Aligned_cols=158  Identities=30%  Similarity=0.450  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||+.++..+.+...+.++.+ ......+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999998877777764 334455677888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++++|..+. .|+..+.... ++.|+++|+||+|+.+.            +.+..++..+++...+. ++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999995 5877766543 57999999999998642            24778889999998884 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQE  188 (203)
Q Consensus       175 ~~~i~~~~~~i~~~  188 (203)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=7.9e-32  Score=190.38  Aligned_cols=161  Identities=39%  Similarity=0.653  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||++++++..+...+.++.+.......+.+.+..+.+.+||+||++.+..+++.+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766667666666667777788889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++++++.+..|+..+......++|+++++||+|+........+++.+++...+++++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988877766689999999999998766677788888888889999999999999999999999876


Q ss_pred             H
Q 048709          189 I  189 (203)
Q Consensus       189 ~  189 (203)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=9.5e-32  Score=190.62  Aligned_cols=160  Identities=31%  Similarity=0.518  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +||+++|.+|||||||++++...  .+...+.++.+.++....+.++ +..+.+.+|||||++.+..+...++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5667777888878777766664 57789999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+..++...+...+....+++++++||++|.|++++|+.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999998877654 568999999999997766677767777777888999999999999999999999


Q ss_pred             HHHH
Q 048709          186 LQEI  189 (203)
Q Consensus       186 ~~~~  189 (203)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            8764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.3e-32  Score=196.75  Aligned_cols=163  Identities=26%  Similarity=0.420  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      .||+++|.+|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999988777777765543 45567888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcC-CeEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQG-LFFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~  174 (203)
                      |++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.+            .+..++..+++...+ +++++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888777544 579999999999997543            245667778887776 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhh
Q 048709          175 GDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~~~~  193 (203)
                      |.|++++|.++++.+....
T Consensus       159 ~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         159 NRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCHHHHHHHHHHHHhccc
Confidence            9999999999999887644

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.2e-31  Score=194.99  Aligned_cols=165  Identities=35%  Similarity=0.619  Sum_probs=144.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+|+|.+|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..+...+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5667877777777888899999999999999999999899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc----cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM----WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+...    +.+..+++.+++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999988988876643 57899999999998542    34556778888888899999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      ++.+.+.....
T Consensus       160 ~i~~~~~~~~~  170 (193)
T cd04118         160 KVAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHHhcc
Confidence            99998876433

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.6e-32  Score=197.53  Aligned_cols=164  Identities=21%  Similarity=0.244  Sum_probs=137.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYRG  100 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~  100 (203)
                      +||+|+|.+|||||||++++.++++...+.++.+.+.+...+.+++..+.+.+|||||...+.        .....+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999999888787887766666667788888999999999964432        112345789


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCC
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGD  176 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~  176 (203)
                      +|++++|||++++++++.+..|+..+....   ..++|+++|+||+|+...+.+..+++.+++. .+++++++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999988877654   3679999999999997766667777777654 568999999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 048709          177 NVDTAFFRLLQEIYAL  192 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~  192 (203)
                      |++++|+.+++.+...
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999887754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=9.9e-32  Score=189.97  Aligned_cols=159  Identities=43%  Similarity=0.745  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888887777778888899999999999999988899999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++++++.+..|+..+..... .+.|+++++||+|+... ....++..+++...+++++++||++|.|++++++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999988877754 78999999999999743 56678888999999999999999999999999999887


Q ss_pred             H
Q 048709          188 E  188 (203)
Q Consensus       188 ~  188 (203)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=8e-32  Score=195.06  Aligned_cols=165  Identities=28%  Similarity=0.405  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999877776776555433 34454 7788999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc----cCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM----WAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~  181 (203)
                      ||++++++++.+. .|+..+... ..+.|+++|+||.|+...    +.+..++..+++...++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999986 477666543 367899999999998653    24667888999999988 8999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 048709          182 FFRLLQEIYALSKK  195 (203)
Q Consensus       182 ~~~i~~~~~~~~~~  195 (203)
                      |..+++.+....++
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999886654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.8e-31  Score=190.54  Aligned_cols=165  Identities=35%  Similarity=0.631  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777778777777777888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~  183 (203)
                      |++++++++.+..|...+.....    .++|+++|+||+|+........++...++...+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888776655443    379999999999998555667788888888887 7999999999999999999


Q ss_pred             HHHHHHHHhh
Q 048709          184 RLLQEIYALS  193 (203)
Q Consensus       184 ~i~~~~~~~~  193 (203)
                      ++++.+.+..
T Consensus       161 ~i~~~~~~~~  170 (172)
T cd01862         161 TIARKALEQE  170 (172)
T ss_pred             HHHHHHHhcc
Confidence            9999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=2.6e-31  Score=195.84  Aligned_cols=167  Identities=39%  Similarity=0.644  Sum_probs=144.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+|+|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            345699999999999999999999998774 4557777777777788888889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHH-HHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          105 VVVYDITKRQSFDHVAR-GVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++|||++++++++.+.. |...+..... .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999976 4444443332 568999999999998766777788888888899999999999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      ++|.+.+.+.
T Consensus       170 ~~l~~~~~~~  179 (211)
T PLN03118        170 EELALKIMEV  179 (211)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1e-31  Score=195.51  Aligned_cols=156  Identities=29%  Similarity=0.501  Sum_probs=139.7

Q ss_pred             EcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH
Q 048709           34 IGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR  113 (203)
Q Consensus        34 vG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~  113 (203)
                      +|.+|||||||+++++.+.+...+.+|.+.++....+.+++..+.+.+|||+|++.|..++..|++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888777888888888888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          114 QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       114 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .++..+..|+..+.+.. .++|+++|+||+|+... .+..+. ..++...++.+++|||++|.||.++|.++++.+.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999888765 58999999999998652 444444 467888899999999999999999999999998764

Ran is involved in the active transport of proteins through nuclear pores.

>cd00154 Rab Rab family

Probab=100.00  E-value=1.8e-31  Score=187.49  Aligned_cols=158  Identities=51%  Similarity=0.856  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998887788888888888888888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+++++++..+..|+..+........|+++++||+|+........+++.+++...+++++++||+++.|+.+++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999988887767899999999999975557788899999999999999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.8e-31  Score=190.04  Aligned_cols=161  Identities=33%  Similarity=0.519  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+|||||++.|..+++.+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999988877776766543 4566678888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |++++++++.+..|...+.+... .+.|+++++||.|+...+....++...+++.++ ++++++||++|.|++++|.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999888776433 689999999999998766777788888888887 8999999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=2.1e-31  Score=199.73  Aligned_cols=161  Identities=26%  Similarity=0.401  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||+++++++.+...+.+|.+ ++....+.+++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877767764 556667788898999999999999999888888899999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 048709          109 DITKRQSFDHVARGVEELRAH---------ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNV  178 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i  178 (203)
                      |++++++|+.+..|+..+...         ...++|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887653         225799999999999976567788888887764 4678999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIY  190 (203)
Q Consensus       179 ~~~~~~i~~~~~  190 (203)
                      +++|++|.+.+.
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998663

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-31  Score=177.49  Aligned_cols=172  Identities=48%  Similarity=0.803  Sum_probs=163.1

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG  100 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  100 (203)
                      .|....+-+|-+++|.-|+|||+|+.++...++....+++.++++-++.+.+.+..+++++|||+|+++|+.+.+.|+++
T Consensus         4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg   83 (215)
T KOG0097|consen    4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   83 (215)
T ss_pred             CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            35566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      +.+.++|+|++.+.++..+..|+........++..+++++||.|+..++.++.++.++|+.+.+..++++||++|.++++
T Consensus        84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nved  163 (215)
T KOG0097|consen   84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVED  163 (215)
T ss_pred             ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHH
Confidence            99999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048709          181 AFFRLLQEIYAL  192 (203)
Q Consensus       181 ~~~~i~~~~~~~  192 (203)
                      .|-...++++.-
T Consensus       164 afle~akkiyqn  175 (215)
T KOG0097|consen  164 AFLETAKKIYQN  175 (215)
T ss_pred             HHHHHHHHHHHh
Confidence            998888888763

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=186.04  Aligned_cols=170  Identities=35%  Similarity=0.615  Sum_probs=160.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|..=+|||||+-+++..++.....+|....+..+.+.+.+....+.||||+|+++|+.+=+.|+++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            35689999999999999999999999999888878888888888899989999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|||+++++||+.++.|...+....+..+.+++|+||+|+.++++++.+++.+++...+..++++||+++.||.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      +..++.+...
T Consensus       170 Lt~~MiE~~s  179 (218)
T KOG0088|consen  170 LTAKMIEHSS  179 (218)
T ss_pred             HHHHHHHHhh
Confidence            9998887553

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=1.3e-31  Score=190.96  Aligned_cols=163  Identities=22%  Similarity=0.226  Sum_probs=140.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+.+||+++|.+|+|||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..+...+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999987 77888888887777788888888999999999999988889999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|+|++++.+++.+..|+..+...  .++|+++|+||+|+.+..+....+..+++...++ +++++||++|.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999988888765332  4789999999999976444444456677777776 479999999999999999


Q ss_pred             HHHHHHH
Q 048709          184 RLLQEIY  190 (203)
Q Consensus       184 ~i~~~~~  190 (203)
                      .+.+.+.
T Consensus       160 ~l~~~~~  166 (169)
T cd01892         160 KLATAAQ  166 (169)
T ss_pred             HHHHHhh
Confidence            9998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-33  Score=188.89  Aligned_cols=169  Identities=38%  Similarity=0.643  Sum_probs=154.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC---------CEEEEEEEEeCCCchhhhhhh
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN---------SKIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~   94 (203)
                      ..++.+|.+.+|.+|+|||||+.+++.+.+.....+|.++++..+.+.++         +..+.+++|||+|+++|+++.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            35677899999999999999999999999999999999999999888762         356889999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      .++++++-+++++||+++.+||.+++.|+..+....- .+.-+++++||+|+.+++.++.+++.+++.++++|||++||-
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~  164 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC  164 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence            9999999999999999999999999999998876544 666799999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|.||++..+-++..+++-
T Consensus       165 tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  165 TGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999998888763

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=9e-31  Score=186.49  Aligned_cols=163  Identities=40%  Similarity=0.692  Sum_probs=144.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||+..+......++..+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45999999999999999999999888877777777777777788888888899999999999999888999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+|++++.+++.+..|+..+......+.|+++++||+|+...+.+..+....+......+++++||++|.|++++|+++.
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998888776666899999999999987666777777778777788999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=2.6e-31  Score=188.65  Aligned_cols=160  Identities=35%  Similarity=0.511  Sum_probs=135.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCcEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~  108 (203)
                      ||+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998887666656654333 45567788889999999999875 3445677899999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRL  185 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~i  185 (203)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+...+.+..++...++...+++++++||++|. |++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988877654  3579999999999997766778888899999999999999999995 999999999


Q ss_pred             HHHHH
Q 048709          186 LQEIY  190 (203)
Q Consensus       186 ~~~~~  190 (203)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.9e-31  Score=192.71  Aligned_cols=158  Identities=22%  Similarity=0.307  Sum_probs=128.9

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHhcCC-----CccCCCCCcce-eeEEEE--------EEECCEEEEEEEEeCCCchhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILS-RFTKNE-----FCFDSKSTIGV-EFQTRT--------VTINSKIIKAQIWDTAGQERYRA   92 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   92 (203)
                      .+||+++|.+|+|||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 555443     34455666642 222222        25688899999999999875  3


Q ss_pred             hhHhhhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc-------------------ccCCC
Q 048709           93 VTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD-------------------MWAVS  152 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  152 (203)
                      +...+++++|++++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4567899999999999999999999996 5888876654 5789999999999863                   35788


Q ss_pred             HHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          153 AEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      .+++.++++..+++|++|||++|.||+++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=5.7e-31  Score=194.96  Aligned_cols=161  Identities=29%  Similarity=0.337  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-CCcEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR-GALGAVV  106 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~  106 (203)
                      +||+++|.+|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+|||+|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 55656655567777888888889999999999872  33455666 9999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999888876543 679999999999998776777888888888889999999999999999999999


Q ss_pred             HHHHHH
Q 048709          186 LQEIYA  191 (203)
Q Consensus       186 ~~~~~~  191 (203)
                      ++.+..
T Consensus       159 ~~~~~~  164 (221)
T cd04148         159 VRQIRL  164 (221)
T ss_pred             HHHHHh
Confidence            998864

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.8e-31  Score=186.34  Aligned_cols=153  Identities=20%  Similarity=0.326  Sum_probs=129.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||+.++..+.+...+.++ +..+ ...+.+++..+.+.+|||+|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988877665443 3333 46678888888999999999864     34678899999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |++++++|+.+..|+..+..... .++|+++|+||.|+.  ..+.+..++..++++.. .++|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999877654 678999999999984  34578888888888776 589999999999999999999


Q ss_pred             HHHH
Q 048709          185 LLQE  188 (203)
Q Consensus       185 i~~~  188 (203)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.6e-31  Score=189.41  Aligned_cols=158  Identities=29%  Similarity=0.429  Sum_probs=136.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~  110 (203)
                      |+|+|.+|||||||++++.++.+...+.++.... ....+.+++..+.+.+|||||++.+..+...+++++|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999999877776665444 345567788889999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709          111 TKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALNGD  176 (203)
Q Consensus       111 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  176 (203)
                      +++++++.+. .|+..+.... ++.|+++|+||+|+...            ..+..++..+++...+. ++++|||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888776644 68999999999998652            23777888889999986 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEIY  190 (203)
Q Consensus       177 ~i~~~~~~i~~~~~  190 (203)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1e-30  Score=187.11  Aligned_cols=159  Identities=28%  Similarity=0.414  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|+|||||++++..+.+...+.++.. ......+.+++..+.+.+|||||++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988766656554 333445677888889999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++.+++.+. .|+..+... ..+.|+++++||+|+.+.            ..+..+++..+++..+. ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 576666554 578999999999998543            25667888889888886 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEI  189 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~  189 (203)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.98  E-value=3.4e-30  Score=182.40  Aligned_cols=161  Identities=35%  Similarity=0.537  Sum_probs=140.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||+++++...+...+.++... ........++..+.+.+||+||+..+......+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999998887666666543 34455677888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++.++..+..|+..+..... .++|+++|+||+|+........++...++..++++++++||++|.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 68999999999999764456677788888888899999999999999999999988


Q ss_pred             HHH
Q 048709          188 EIY  190 (203)
Q Consensus       188 ~~~  190 (203)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.6e-30  Score=185.96  Aligned_cols=157  Identities=27%  Similarity=0.440  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988877776664 4455556778888899999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++.+++.+. .|+..+... ..+.|+++++||.|+..            .+.+..+++..++...+. .+++|||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999984 687777653 25789999999999863            346778889999998887 899999999


Q ss_pred             CCCHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQ  187 (203)
Q Consensus       175 ~~~i~~~~~~i~~  187 (203)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00876 Ras Ras family

Probab=99.98  E-value=3.3e-30  Score=181.70  Aligned_cols=158  Identities=37%  Similarity=0.528  Sum_probs=140.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|++|||||||++++++..+...+.++.. +........++..+.+.+||+||...+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887666666655 5556666777778899999999999999989999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      +++++++..+..|+..+..... ..+|+++++||+|+........+++..++...+.+++++|++++.|+++++++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888887765 689999999999998766777888999999888999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.98  E-value=2.7e-30  Score=186.38  Aligned_cols=164  Identities=25%  Similarity=0.414  Sum_probs=132.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      .+||+++|.+|||||||++++....+... .++.+.......+.. ++..+.+.+|||||++.+..++..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999999999998877544 466665555555543 4466889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------cCCeEEEEecCCCCCHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------QGLFFSEASALNGDNVD  179 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~  179 (203)
                      |+|++++.+++.+..|+..+..... .+.|+++++||+|+.+  ....+++..++..      ..++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999888888877765433 5799999999999865  3455555554431      13568999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 048709          180 TAFFRLLQEIYALSK  194 (203)
Q Consensus       180 ~~~~~i~~~~~~~~~  194 (203)
                      +++++|.+.+.+.++
T Consensus       160 ~l~~~l~~~l~~~~~  174 (183)
T cd04152         160 EGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.3e-30  Score=185.54  Aligned_cols=154  Identities=24%  Similarity=0.423  Sum_probs=124.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|||||||+++|..+.+.. +.+|.+.+..  .+..  ..+.+.+|||||++.+..++..+++++|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998877643 4466665443  2323  45789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|++++.++..+..++..+.... ..++|+++|+||+|+.+  .+..+++.+++..     ..++++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999999888877765543 26789999999999875  4566777776532     235789999999999999


Q ss_pred             HHHHHHH
Q 048709          181 AFFRLLQ  187 (203)
Q Consensus       181 ~~~~i~~  187 (203)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.4e-29  Score=182.14  Aligned_cols=165  Identities=34%  Similarity=0.490  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      .||+++|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||+..+...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887766666654433 455667778888999999999999988999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |+++..+++.+..|+..+.+... .+.|+++++||+|+...+....++...++...+.+++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999998888777544 67899999999999765566777778888888899999999999999999999999


Q ss_pred             HHHHhhc
Q 048709          188 EIYALSK  194 (203)
Q Consensus       188 ~~~~~~~  194 (203)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.3e-30  Score=184.90  Aligned_cols=159  Identities=21%  Similarity=0.391  Sum_probs=125.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+++|.+|||||||++++..+.+. .+.+|.+.+..  .+..  ..+.+++||+||++.+..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999887765 34566665433  3333  4578999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~  179 (203)
                      +|+|+++++++..+..++..+..... .++|+++++||+|+.+  ....+++.+.+...     .+.+++|||++|.|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC--CCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            99999999999988877776654322 5799999999999976  34555555443222     1346789999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++|++|.+.+..
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=4.9e-30  Score=181.05  Aligned_cols=152  Identities=24%  Similarity=0.452  Sum_probs=119.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||++++..+.+. .+.++.+....  .+..  ..+.+.+||+||++.+..++..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877775 35566665443  3333  3578999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      |++++.++..+..++..+..... .+.|+++++||+|+.+  ....+++.....     ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN--AMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC--CCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            99999999999887777654322 5689999999999965  233444433321     223468899999999999999


Q ss_pred             HHHHH
Q 048709          183 FRLLQ  187 (203)
Q Consensus       183 ~~i~~  187 (203)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3.2e-30  Score=183.79  Aligned_cols=156  Identities=25%  Similarity=0.421  Sum_probs=127.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+|||||||++++.+..+.. +.+|.+....  .+..  ..+.+.+|||||+..+...+..+++++|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886643 4566554443  3333  45788999999999999899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG------LFFSEASALNGDNVDTAF  182 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~  182 (203)
                      +++++++..+..|+..+.+... .+.|+++++||+|+.+  .+..+++.+++...+      +.+++|||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999998888765433 5689999999999965  467777777764322      368899999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      ++|.+.+..-
T Consensus       154 ~~l~~~~~~~  163 (169)
T cd04158         154 DWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHhhc
Confidence            9999877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=8.2e-30  Score=182.61  Aligned_cols=156  Identities=26%  Similarity=0.426  Sum_probs=123.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|||||||++++..+.+. .+.+|.+....  .+..  ..+.+.+||+||++.+..++..|++++|++++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            3599999999999999999999877764 34566655443  3333  34789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|++++++++....++..+.... ..+.|+++|+||+|+.+  ....+++.+....     ..+.++++||++|.|+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD--AMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc--CCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999988887775433 25789999999999976  3344454443321     234577899999999999


Q ss_pred             HHHHHHHHH
Q 048709          181 AFFRLLQEI  189 (203)
Q Consensus       181 ~~~~i~~~~  189 (203)
                      +|++|.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-29  Score=182.07  Aligned_cols=159  Identities=23%  Similarity=0.374  Sum_probs=124.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|++|||||||++++..+.+.. +.+|.+....  .+..  ..+.+.+|||||++.+..++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998777754 4466654433  3333  44789999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|+++++++.....++..+.... ..+.|+++|+||.|+.+  ....+++...+..     ..++++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            999999999999887777664432 25689999999999865  3344444333221     224577999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048709          181 AFFRLLQEIYAL  192 (203)
Q Consensus       181 ~~~~i~~~~~~~  192 (203)
                      +|++|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887764

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=8.5e-32  Score=175.99  Aligned_cols=162  Identities=40%  Similarity=0.666  Sum_probs=150.2

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeC
Q 048709           32 VVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDI  110 (203)
Q Consensus        32 ~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~  110 (203)
                      +++|.+++|||+|+-++..+.+. ....+|.++++..+.+..++..+++++|||+|+++|++....|++++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999888877765 44568999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          111 TKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       111 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .+..||++.+.|+.++..+....+.+++++||+|+...+.+..++...++..+++|+.++||++|.|++..|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999998888899999999999888899999999999999999999999999999999999988876


Q ss_pred             Hhh
Q 048709          191 ALS  193 (203)
Q Consensus       191 ~~~  193 (203)
                      ...
T Consensus       161 k~~  163 (192)
T KOG0083|consen  161 KLK  163 (192)
T ss_pred             Hhc
Confidence            643

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=3e-29  Score=183.11  Aligned_cols=160  Identities=26%  Similarity=0.412  Sum_probs=134.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+|+|||||++++++..+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776656653 4555667778888899999999999998888899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD-MWAVSAEDVVEFAE-DQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877655 5799999999999865 34455555554443 4567899999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=4e-29  Score=179.00  Aligned_cols=159  Identities=26%  Similarity=0.412  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      .||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988777767765444 345677888889999999999999888888899999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |++++++++.+. .|+..+... ..+.|+++|+||+|+...            ..+...+..+++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998885 576666543 357899999999998642            23445677788877764 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEI  189 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~  189 (203)
                      |.|++++|+++.+.+
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=6.4e-29  Score=179.83  Aligned_cols=166  Identities=30%  Similarity=0.466  Sum_probs=138.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      .||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998877666555544333 345667788889999999999888877777889999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc----------ccCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD----------MWAVSAEDVVEFAEDQGL-FFSEASALNGD  176 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  176 (203)
                      |+++.++++.+. .|+..+.... ++.|+++|+||+|+..          .+.+..++...+++..+. ++++|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 5888776654 5699999999999853          234566788888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHhhccc
Q 048709          177 NVDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~~~~~  196 (203)
                      |++++|+++.+.+...+++.
T Consensus       160 ~v~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         160 GVDDVFEAATRAALLVRKSE  179 (187)
T ss_pred             CHHHHHHHHHHHHhcccCcc
Confidence            99999999999888776654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=2.8e-29  Score=181.43  Aligned_cols=165  Identities=35%  Similarity=0.496  Sum_probs=153.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|+|||+|..++....+...+.||.. +.+.+.+.+++..+.+.++||+|++.+..+...++.+.|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999988876 7788888899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      ||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++..+++..++++++++||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999855544 668999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048709          186 LQEIYAL  192 (203)
Q Consensus       186 ~~~~~~~  192 (203)
                      +..+...
T Consensus       161 ~r~~~~~  167 (196)
T KOG0395|consen  161 VREIRLP  167 (196)
T ss_pred             HHHHHhh
Confidence            9988763

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=2.8e-29  Score=179.54  Aligned_cols=155  Identities=24%  Similarity=0.406  Sum_probs=124.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|++|||||||+++|.+..+. ...++.+  +....+.++  .+.+.+||+||++.+..++..+++++|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999999999987553 3335544  333444454  467899999999999888999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.  ...+++.+++.     ...++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            9999999999998888877765432 267999999999999763  35566666553     345789999999999999


Q ss_pred             HHHHHHHH
Q 048709          180 TAFFRLLQ  187 (203)
Q Consensus       180 ~~~~~i~~  187 (203)
                      ++|+++++
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=2.9e-30  Score=183.08  Aligned_cols=153  Identities=18%  Similarity=0.305  Sum_probs=124.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      .|+++|.+|||||||++++.+..+...+.+|.+...    ..+++..+++.+||+||+..+..++..+++++|++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            389999999999999999999877766667766542    2344456789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH----HHHHHHHHHcCCeEEEEecCC------CCCHH
Q 048709          110 ITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA----EDVVEFAEDQGLFFSEASALN------GDNVD  179 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~  179 (203)
                      ++++.++...+.|+..+.... .++|+++|+||+|+...+.+..    .++..++...++++++|||++      ++||+
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999988888776543 6899999999999976432221    123445566778899999888      99999


Q ss_pred             HHHHHHHH
Q 048709          180 TAFFRLLQ  187 (203)
Q Consensus       180 ~~~~~i~~  187 (203)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=6.4e-29  Score=177.14  Aligned_cols=157  Identities=31%  Similarity=0.496  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|||||||+++|++..+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999988666655543 344455667888899999999999988888888889999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc-----------CCCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW-----------AVSAEDVVEFAEDQGL-FFSEASALNG  175 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~sa~~~  175 (203)
                      |++++.++.... .|+..+.... .+.|+++|+||+|+....           .+..++..+++...+. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999988874 4666655543 489999999999987643           2356778888888887 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQ  187 (203)
Q Consensus       176 ~~i~~~~~~i~~  187 (203)
                      .|+.+++++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.7e-28  Score=181.42  Aligned_cols=165  Identities=28%  Similarity=0.472  Sum_probs=143.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            44569999999999999999999888888888888988888877777788889999999999999998889999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|||+++..++..+..|+..+.... .+.|+++++||+|+.+. .... +...++...++.++++||++|.|+++.|.+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  162 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLW  162 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988887654 57899999999998653 3333 345677788899999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      |.+.+...
T Consensus       163 ia~~l~~~  170 (215)
T PTZ00132        163 LARRLTND  170 (215)
T ss_pred             HHHHHhhc
Confidence            99988753

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=2e-28  Score=174.00  Aligned_cols=160  Identities=25%  Similarity=0.321  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||++++.++.+...++.+ ... ......+++..+++.+|||||...+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998886554332 222 2333455667789999999999888777777889999999999


Q ss_pred             eCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHc-C-CeEEEEecCCCCCHHHHHH
Q 048709          109 DITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQ-G-LFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       109 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~-~-~~~~~~sa~~~~~i~~~~~  183 (203)
                      |++++.+++.+. .|+..+.... .+.|+++|+||+|+.+....  ..+++..++... . .++++|||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 5777666544 58999999999999764332  123333333333 2 3799999999999999999


Q ss_pred             HHHHHHHH
Q 048709          184 RLLQEIYA  191 (203)
Q Consensus       184 ~i~~~~~~  191 (203)
                      .+.+.+.+
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.97  E-value=2.8e-28  Score=177.41  Aligned_cols=147  Identities=26%  Similarity=0.368  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-----SKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      +||+++|.+|+|||||++++.++.+...+.+|.+.++..+.+.++     +..+.+.+|||+|++.|..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877777766663     567899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCcccCCCHH----HHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHA-------------------DSSIRIILIGNKSDLVDMWAVSAE----DVVEFA  160 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  160 (203)
                      +|+|||++++++++.+..|+..+....                   ..++|+++|+||.|+.+.+.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   257999999999999765444443    244567


Q ss_pred             HHcCCeEEEEecCCC
Q 048709          161 EDQGLFFSEASALNG  175 (203)
Q Consensus       161 ~~~~~~~~~~sa~~~  175 (203)
                      .+.+++.++.+++++
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            889999999988865

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=2.7e-28  Score=174.63  Aligned_cols=153  Identities=25%  Similarity=0.445  Sum_probs=121.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .++|+++|.+|+|||||++++..+.+.. ..++.+.+..  .+..+  .+.+.+||+||++.+...+..+++++|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999887754 3466554432  33333  47899999999999998899999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      +|+++++++.....++..+..... .+.|+++++||+|+.+  ....+++.+..     ....+++++|||++|.|++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            999999998888777776654433 5789999999999876  33455544332     234467999999999999999


Q ss_pred             HHHHHH
Q 048709          182 FFRLLQ  187 (203)
Q Consensus       182 ~~~i~~  187 (203)
                      |++|.+
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=2.8e-28  Score=172.38  Aligned_cols=152  Identities=23%  Similarity=0.392  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +|+++|.+|||||||+++|.+... ...+.++.+....  .+.  ...+.+.+|||||+..+..++..+++++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 3445566554332  222  24577899999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~  180 (203)
                      |++++.++..+..|+..+.+..   ..++|+++|+||+|+.+.  ...+++.....     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888877765532   257999999999999753  23334333322     1234689999999999999


Q ss_pred             HHHHHHH
Q 048709          181 AFFRLLQ  187 (203)
Q Consensus       181 ~~~~i~~  187 (203)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=4.7e-28  Score=173.34  Aligned_cols=157  Identities=27%  Similarity=0.491  Sum_probs=130.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|+.||||||++++|..+.... ..||.+  +....+.+++  +.+.+||.+|+..++..|+.|+.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            567999999999999999999999876544 335544  4455556655  56899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------cCCeEEEEecCCCCCH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------QGLFFSEASALNGDNV  178 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i  178 (203)
                      ||+|.++.+.+......+..+..... .++|+++++||.|+++  ....+++......      ..+.++.|||.+|.|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999999888888888777766544 6899999999999987  5677777766542      3456999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          179 DTAFFRLLQEI  189 (203)
Q Consensus       179 ~~~~~~i~~~~  189 (203)
                      .+.++||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=3.3e-28  Score=171.77  Aligned_cols=152  Identities=25%  Similarity=0.486  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      +|+++|++|||||||++++.++.+... .++.+...  ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887543 35554433  333333 34689999999999999889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH------HHcCCeEEEEecCCCCCHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA------EDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++.++.....|+..+.+... .+.|+++|+||+|+..  ....+++....      ...++++++|||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc--CcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999888888877765433 6799999999999865  23344443322      1234579999999999999999


Q ss_pred             HHHHH
Q 048709          183 FRLLQ  187 (203)
Q Consensus       183 ~~i~~  187 (203)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=6.2e-28  Score=171.50  Aligned_cols=152  Identities=25%  Similarity=0.440  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF------CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      +|+++|++|+|||||+++|.+...      ...+.++.+...  ..+.++  ...+.+|||||+..+..++..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      112234443333  334444  4678999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-------cCCeEEEEecCCC
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-------QGLFFSEASALNG  175 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~  175 (203)
                      +++|+|+++++++.....++..+.+... .++|+++++||+|+..  ....+++.++...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999888888888877765433 6799999999999876  3455555555433       3468999999999


Q ss_pred             CCHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQ  187 (203)
Q Consensus       176 ~~i~~~~~~i~~  187 (203)
                      .|+++++++|.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=7.9e-28  Score=174.54  Aligned_cols=155  Identities=22%  Similarity=0.336  Sum_probs=126.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ...+|+++|++|||||||++++.+..+. .+.++.+.  ....+.+++  +.+.+||+||+..+...+..+++++|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4699999999999999999999987764 34445443  334455554  678999999999988888899999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH----------------cCCeEEE
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED----------------QGLFFSE  169 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~  169 (203)
                      |+|+++..++.....++..+..... .+.|+++++||+|+..  .+..+++.+.+..                ..+++++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999999888888887765443 6799999999999865  5667777776643                2246899


Q ss_pred             EecCCCCCHHHHHHHHHHH
Q 048709          170 ASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~  188 (203)
                      |||++|.|++++|+++.+.
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             eEecCCCChHHHHHHHHhh
Confidence            9999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=4.8e-30  Score=175.82  Aligned_cols=180  Identities=31%  Similarity=0.482  Sum_probs=165.5

Q ss_pred             cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 048709           19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYY   98 (203)
Q Consensus        19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   98 (203)
                      .|.+...+..+|++++|..++||||+|++++.+-+...+..+.++++....+.+++..+...+||++|++.|+.+..+|+
T Consensus        11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            34556677889999999999999999999999999999999999999998888888888889999999999999999999


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      +++.+.++||+-++..||+.+..|++.+.... .++|.++|-||+|+.++..+..+++...++.....++.+|++...|+
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             ccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            99999999999999999999999999987765 67999999999999998889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccc
Q 048709          179 DTAFFRLLQEIYALSKKELEC  199 (203)
Q Consensus       179 ~~~~~~i~~~~~~~~~~~~~~  199 (203)
                      ..+|..+++++....+..+..
T Consensus       170 ~~vF~YLaeK~~q~~kq~~~~  190 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKKQSLNA  190 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            999999999998876665443

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.4e-27  Score=169.85  Aligned_cols=151  Identities=23%  Similarity=0.377  Sum_probs=120.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      +|+++|.+|||||||++++.+. +...+.+|.+..  ...+..+  .+.+.+||+||+..+..++..|++++|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555555666543  3344444  4678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHH------HHHc--CCeEEEEecCCC-----
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEF------AEDQ--GLFFSEASALNG-----  175 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~--~~~~~~~sa~~~-----  175 (203)
                      ++++.+++.+..|+..+..... .++|+++|+||.|+.+.  ....++.+.      +...  .+++++|||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999888876543 67999999999999763  333333332      2122  356888999998     


Q ss_pred             -CCHHHHHHHHHH
Q 048709          176 -DNVDTAFFRLLQ  187 (203)
Q Consensus       176 -~~i~~~~~~i~~  187 (203)
                       .|+.+.|+||..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=1.4e-27  Score=168.33  Aligned_cols=151  Identities=25%  Similarity=0.403  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+++|||||++++..+.+.. ..++.+.+.  ..+..  ..+++++|||||+..+..++..+++.+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877643 335544433  23333  34788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++++.++.....++..+.+. ...+.|+++++||+|+.+.  ....++.+...     ..+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99988887766666554332 2257899999999998753  23344433221     1235799999999999999999


Q ss_pred             HHHH
Q 048709          184 RLLQ  187 (203)
Q Consensus       184 ~i~~  187 (203)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.96  E-value=1.8e-27  Score=171.75  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=123.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|||||||++++.+..+.. +.++.+.  ....+.++  .+++.+||+||+..+...+..++.++|++++
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45999999999999999999999876643 2344333  23334444  3678999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------------cCCeEEEEecC
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------------QGLFFSEASAL  173 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~  173 (203)
                      |+|++++.++.....++..+..... .+.|+++++||+|+..  .++.+++.+.+..            ....+++|||+
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~  168 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV  168 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence            9999999999888888777665432 6789999999999875  5667777665421            13358999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQE  188 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~  188 (203)
                      +|.|++++++||.++
T Consensus       169 ~~~g~~~~~~wl~~~  183 (184)
T smart00178      169 RRMGYGEGFKWLSQY  183 (184)
T ss_pred             cCCChHHHHHHHHhh
Confidence            999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=2.9e-27  Score=166.59  Aligned_cols=151  Identities=25%  Similarity=0.469  Sum_probs=120.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|.+|||||||++++++... ....++.+...  ..+.+.  ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999874 33345544433  334443  4678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++++++.....++..+..... .+.|+++++||+|+...  ...+++.+....     ..++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999999998888877766443 68999999999999763  344455444332     346899999999999999999


Q ss_pred             HHHH
Q 048709          184 RLLQ  187 (203)
Q Consensus       184 ~i~~  187 (203)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=2e-26  Score=164.72  Aligned_cols=143  Identities=34%  Similarity=0.617  Sum_probs=129.0

Q ss_pred             CCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 048709           51 NEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA  130 (203)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  130 (203)
                      +.+...+.+|.+.++....+.+++..+++.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34566778899999988888899999999999999999999999999999999999999999999999999999887765


Q ss_pred             CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          131 DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       131 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      ...+|+++|+||+|+.+.+.+..++...++...++.+++|||++|.|++++|++|++.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            567899999999999776678888899999989999999999999999999999999987643

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=5.9e-28  Score=171.17  Aligned_cols=165  Identities=30%  Similarity=0.472  Sum_probs=149.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ..+|++|||..++|||+|+-.+..+.++..+.||.. +.+...+.++ ++.+.+.+|||+|++.|+.+++..+.++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999988886 6677778885 99999999999999999998888999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEe
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  171 (203)
                      ++|++.+++|++++ ..|+.++...+ +++|+|+|++|.|+.++            ..+..++..+.+++.| ..|++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            99999999999997 68999888877 89999999999999742            3577888999999999 5799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhh
Q 048709          172 ALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      |++..|++++|+..+.......
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhccc
Confidence            9999999999999999988754

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.95  E-value=2.3e-26  Score=155.46  Aligned_cols=159  Identities=23%  Similarity=0.407  Sum_probs=131.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ++.++|+++|..||||||++++|.+.+.+... ||.+  +...++.+  +.+++++||.+|+...+..|+.||..+|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~-pt~g--f~Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTIS-PTLG--FQIKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccccC-Cccc--eeeEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            45899999999999999999999998754333 5544  44445444  4478999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHH------HHHHHcCCeEEEEecCCCCCH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVV------EFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      ||+|.+++..+++....+..+..-.. .+.|+++++||.|++.  ....+++.      +++....++++.||+.+|+++
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            99999999888888777766655433 6789999999999985  44555443      444667889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIYA  191 (203)
Q Consensus       179 ~~~~~~i~~~~~~  191 (203)
                      .+.++|++..+.+
T Consensus       167 ~~gidWL~~~l~~  179 (185)
T KOG0073|consen  167 LEGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998877

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=3.4e-26  Score=160.68  Aligned_cols=152  Identities=24%  Similarity=0.466  Sum_probs=120.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      .|+++|++|||||||+++|.+.++...+.++.+....  .....+  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3899999999999999999999888777777665544  233333  789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHH
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++..++.....++..+..... .++|+++|+||+|+.+.  ...+++....     ....++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            9999888888777776654332 67899999999998763  2233332222     12346789999999999999999


Q ss_pred             HHHH
Q 048709          184 RLLQ  187 (203)
Q Consensus       184 ~i~~  187 (203)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=174.05  Aligned_cols=140  Identities=27%  Similarity=0.456  Sum_probs=121.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-------------CEEEEEEEEeCCCchhhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-------------SKIIKAQIWDTAGQERYRA   92 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~~~   92 (203)
                      ...+||+|+|..|||||||+++|.++.+...+.+|.+.++....+.++             +..+.+.||||+|++.|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            356999999999999999999999998888888898888877777664             2568899999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCccc---C---CCHH
Q 048709           93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD------------SSIRIILIGNKSDLVDMW---A---VSAE  154 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~  154 (203)
                      ++..|+++++++|+|||++++.+++.+..|+..+.....            .++|+++|+||+|+...+   .   +..+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            999999999999999999999999999999999877531            358999999999996542   1   3678


Q ss_pred             HHHHHHHHcCC
Q 048709          155 DVVEFAEDQGL  165 (203)
Q Consensus       155 ~~~~~~~~~~~  165 (203)
                      ++++++...++
T Consensus       179 ~a~~~A~~~g~  189 (334)
T PLN00023        179 AARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHcCC
Confidence            99999998875

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=6.1e-26  Score=161.41  Aligned_cols=156  Identities=18%  Similarity=0.192  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSAYYR   99 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~   99 (203)
                      .+|+++|.+|+|||||+++|.+..+.....+..+..........  ..+.+++|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37999999999999999999998765332222223333323222  34789999999973210         11111223


Q ss_pred             CCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709          100 GALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      .+|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+.+....  .+..++......++++|||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDL--SEIEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhH--HHHHHhhhhccCceEEEEecccCC
Confidence            4689999999998654  355556777665433 47899999999999764332  224555666678899999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEI  189 (203)
Q Consensus       178 i~~~~~~i~~~~  189 (203)
                      ++++++++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=7e-26  Score=162.72  Aligned_cols=154  Identities=20%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CccCCCCC------cceeeEEEEEE--E---CCEEEEEEEEeCCCchhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE-------FCFDSKST------IGVEFQTRTVT--I---NSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~~~   91 (203)
                      +|+++|.+++|||||+++|++..       +...+.++      .+.+.......  +   ++..+.+++|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       11111111      12233332222  2   5667889999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---eEE
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---FFS  168 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  168 (203)
                      .....++..+|++++|+|+++..+......|....    ..++|+++|+||+|+.+.  ...+...+++...++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSA--DPERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcC--CHHHHHHHHHHHhCCCcccEE
Confidence            98999999999999999999876655554443322    246899999999998652  222233455555555   489


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 048709          169 EASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       169 ~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ++||++|.|++++++++.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.8e-25  Score=159.78  Aligned_cols=155  Identities=19%  Similarity=0.369  Sum_probs=117.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|++|||||||++++.+..+.. ..++.+..  ...+..++  ..+.+||+||+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            347999999999999999999999876543 33554433  33444444  56899999999888888888999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-----LFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  179 (203)
                      +|+|+++..++.....++..+..... .++|+++++||+|+.+.  ...+++.+......     .+++++||++|.|++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA--APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC--CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            99999998888887777666554332 57999999999998652  23333333222111     247899999999999


Q ss_pred             HHHHHHHH
Q 048709          180 TAFFRLLQ  187 (203)
Q Consensus       180 ~~~~~i~~  187 (203)
                      ++|+||.+
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=4.4e-26  Score=162.40  Aligned_cols=157  Identities=18%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHhh---hcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----RYRAVTSAY---YRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~---~~~~d  102 (203)
                      +|+++|.+|||||||+++|.+.+......+..+.......+.+++. ..+.+|||||..    .+..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999986643222232233333333444332 478999999953    222233333   44699


Q ss_pred             EEEEEEeCCCH-HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCH
Q 048709          103 GAVVVYDITKR-QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNV  178 (203)
Q Consensus       103 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i  178 (203)
                      ++++|+|++++ ++++.+..|.+.+.....  .++|+++|+||+|+.+... ..+....+... ...+++++||+++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888887766543  4689999999999876432 23344455555 3788999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          179 DTAFFRLLQE  188 (203)
Q Consensus       179 ~~~~~~i~~~  188 (203)
                      +++|+++.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=7.1e-26  Score=166.07  Aligned_cols=157  Identities=20%  Similarity=0.178  Sum_probs=115.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER---------YRAVTSA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   96 (203)
                      +..++|+|+|++|||||||++++++........+..+.+.....+.+++. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            44589999999999999999999998754443344444445555555443 2689999999622         22221 2


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+...     ....+.....+++++||++|.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LEERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HHHHhhcCCCceEEEEcCCCC
Confidence            367899999999999988887776666666555446789999999999876321     114455567789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEI  189 (203)
Q Consensus       177 ~i~~~~~~i~~~~  189 (203)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=1.9e-25  Score=173.69  Aligned_cols=162  Identities=17%  Similarity=0.073  Sum_probs=123.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------YRAVTSAYYRGA  101 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~  101 (203)
                      -.|+++|.||||||||+++|++.+......+.++..+..-.+.+. ...++.+||+||...       ....+..+++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999866554444555666666666553 224589999999632       222333456789


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      +++++|+|+++.++++.+..|...+.....  .++|+++|+||+|+.+......+....++...+.+++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999987788888888888876643  478999999999997644333344555555667899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      +++++|.+.+..
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=6.9e-25  Score=153.70  Aligned_cols=158  Identities=34%  Similarity=0.499  Sum_probs=125.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+..++..+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887667767777777776677777778899999999999988888889999999999


Q ss_pred             EeCCCH-HHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          108 YDITKR-QSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       108 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|.... .++.... .+...+......+.|+++++||+|+.... ........+......+++++||++|.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998876 5555554 55555555544488999999999997632 33333333444456789999999999999999876


Q ss_pred             H
Q 048709          186 L  186 (203)
Q Consensus       186 ~  186 (203)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            3

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=4.6e-25  Score=156.05  Aligned_cols=152  Identities=19%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +.|+++|.+|+|||||+++|++..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999999743   2222233444444444444442 357899999999988777777889999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHH---cCCeEEEEecCCCCC
Q 048709          106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAED---QGLFFSEASALNGDN  177 (203)
Q Consensus       106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~---~~~~~~~~sa~~~~~  177 (203)
                      +|+|+++   +++.+.+.    .+...  ...|+++++||+|+.+..  ....+++.+.+..   .+.+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   33433322    22211  124899999999997532  1123444555544   467899999999999


Q ss_pred             HHHHHHHHHH
Q 048709          178 VDTAFFRLLQ  187 (203)
Q Consensus       178 i~~~~~~i~~  187 (203)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.4e-25  Score=153.45  Aligned_cols=160  Identities=22%  Similarity=0.388  Sum_probs=135.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .....+|+++|..++||||+++.|..+++... .||.+.......+    .++++.+||.+|+.+++.+|+.|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            34579999999999999999999998887665 4776665554444    368899999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNV  178 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i  178 (203)
                      |||+|.++++.+..++..+..+..... .+.|+++.+||.|+++  ..+..++.+.....     .+.+..|+|.+|+|+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            999999999999999888888777665 7899999999999988  66777776665443     346888999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIYA  191 (203)
Q Consensus       179 ~~~~~~i~~~~~~  191 (203)
                      .+.++|+.+.+..
T Consensus       167 ~egl~wl~~~~~~  179 (181)
T KOG0070|consen  167 YEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1e-23  Score=156.18  Aligned_cols=165  Identities=39%  Similarity=0.528  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||+++|.+..+...+.++.+..+........+..+++.+|||+|++.++.++..|+.+++++++|+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            99999999999999999999999999888888777777777666655888999999999999999999999999999999


Q ss_pred             eCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHc---CCeEEEEec
Q 048709          109 DITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQ---GLFFSEASA  172 (203)
Q Consensus       109 d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~sa  172 (203)
                      |..+ ..+++....|...+........|+++++||+|+....            ..............   ...++++|+
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  165 (219)
T COG1100          86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA  165 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence            9999 5556666788888887766679999999999997652            22222222222222   234899999


Q ss_pred             C--CCCCHHHHHHHHHHHHHHhh
Q 048709          173 L--NGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       173 ~--~~~~i~~~~~~i~~~~~~~~  193 (203)
                      +  .+.++.++|..+...+....
T Consensus       166 ~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         166 KSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ccCCCcCHHHHHHHHHHHHHHhh
Confidence            9  99999999999999987643

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=5.2e-25  Score=152.47  Aligned_cols=148  Identities=19%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh------hhhhHhhh--cC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY------RAVTSAYY--RG  100 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~--~~  100 (203)
                      ++|+++|.||+|||||+|+|++........|..+.+.....+.+.+  ..+.++|+||..+.      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999998777778777877777777777  56789999994322      23334444  68


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      .|++++|+|+++.+.-.   .+...+..   .++|+++++||+|......... +...+.+..++|++.+||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999999854221   23333333   4799999999999876433322 35667777899999999999999999


Q ss_pred             HHHHH
Q 048709          181 AFFRL  185 (203)
Q Consensus       181 ~~~~i  185 (203)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=5.7e-25  Score=152.28  Aligned_cols=134  Identities=22%  Similarity=0.197  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch-----hhhhhhHhhhcCCcEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-----RYRAVTSAYYRGALGA  104 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~  104 (203)
                      ||+++|.+|+|||||+++|.+..+.  +.++.+       ..+..     .+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  222221       12221     689999972     3444433 48999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|+|++++.++.. ..|...+      ..|+++|+||+|+.+. ....+++.+++...+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887654 2343321      2389999999998652 4456677788877776 799999999999999998


Q ss_pred             HHH
Q 048709          184 RLL  186 (203)
Q Consensus       184 ~i~  186 (203)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=4.3e-25  Score=161.57  Aligned_cols=156  Identities=23%  Similarity=0.250  Sum_probs=106.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG-----------QERYRAVT   94 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~   94 (203)
                      ...++|+++|.+|+|||||+|+|.+..+.....+.  .+.....+...    .+.+|||||           ++.+...+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            35689999999999999999999988765444443  33333333332    588999999           45666665


Q ss_pred             Hhhhc----CCcEEEEEEeCCCHHHH----H------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH
Q 048709           95 SAYYR----GALGAVVVYDITKRQSF----D------HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA  160 (203)
Q Consensus        95 ~~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  160 (203)
                      ..++.    .++++++|+|.++....    .      .-..++..+.   ..++|+++|+||+|+.+..   .+...+++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~  154 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA  154 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence            55553    45788889988653221    0      0011122222   2478999999999986532   33445555


Q ss_pred             HHcCC---------eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          161 EDQGL---------FFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       161 ~~~~~---------~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      ...++         +++++||++| |+++++++|.+.+.+..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            55543         5899999999 999999999998765544

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.93  E-value=8.7e-24  Score=146.83  Aligned_cols=153  Identities=42%  Similarity=0.703  Sum_probs=120.8

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC
Q 048709           33 VIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        33 vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                      ++|++|+|||||++++.+... .....++. .+.........+....+.+||+||...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 34443444 6666666666677889999999999888887788999999999999999


Q ss_pred             CHHHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH-HHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          112 KRQSFDHVARGV-EELRAHADSSIRIILIGNKSDLVDMWAVSAED-VVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       112 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|++++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988887763 22333344789999999999987643222222 3445566678999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=4.7e-24  Score=167.19  Aligned_cols=154  Identities=20%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~~   97 (203)
                      ..++|+++|.+|+|||||+|+|++.+......+..+.++....+.+++ ...+.+|||+|.         +.|.... ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            458999999999999999999999876544445556677777777743 247899999996         2233322 24


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+....     ++... .....+++++||++|.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence            7899999999999998887777666655555444578999999999986521     22222 12234689999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          178 VDTAFFRLLQE  188 (203)
Q Consensus       178 i~~~~~~i~~~  188 (203)
                      +++++++|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.93  E-value=5.4e-25  Score=146.24  Aligned_cols=157  Identities=21%  Similarity=0.389  Sum_probs=130.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+.+.++|..+||||||+|.+..+.+.....|+.|...+.    +....+.+.+||.||+..|+.+|+.|+++++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            5889999999999999999999999988888887765443    333557889999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      +|+.+++.+.-.+..+..+..+.. .++|+++++||.|+++  .....++..-.     ....+..|.+|+++..|++.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence            999999888888777777766666 8899999999999987  44444443322     123356899999999999999


Q ss_pred             HHHHHHHHH
Q 048709          182 FFRLLQEIY  190 (203)
Q Consensus       182 ~~~i~~~~~  190 (203)
                      .+|++++.-
T Consensus       174 ~~Wli~hsk  182 (186)
T KOG0075|consen  174 LDWLIEHSK  182 (186)
T ss_pred             HHHHHHHhh
Confidence            999998754

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=6.3e-24  Score=165.13  Aligned_cols=159  Identities=19%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGA  101 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~  101 (203)
                      -.|+++|.|+||||||+++|++........+.++..+....+.+++ ..++.+||+||....       ......++..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5789999999999999999998765444445555666666666653 356899999996421       12222345679


Q ss_pred             cEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709          102 LGAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus       102 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      +++++|+|+++.   +.++.+..|.+.+.....  .+.|+++|+||+|+..... ..+....+....+.+++++||+++.
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   577777777777665533  4789999999999976422 2233445555667889999999999


Q ss_pred             CHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEI  189 (203)
Q Consensus       177 ~i~~~~~~i~~~~  189 (203)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=6.3e-24  Score=149.41  Aligned_cols=148  Identities=17%  Similarity=0.159  Sum_probs=111.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhhc--CCcEE
Q 048709           33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYYR--GALGA  104 (203)
Q Consensus        33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~  104 (203)
                      ++|.+|+|||||++++.+........+..+.+.....+.+++  ..+.+|||||+..+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875555556666666666666665  4689999999876553      3455564  99999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|+++++...   .++..+..   .++|+++++||+|+.+...... ....++...+++++++||++|.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999865432   33333333   3689999999999976433333 345667777899999999999999999999


Q ss_pred             HHHHH
Q 048709          185 LLQEI  189 (203)
Q Consensus       185 i~~~~  189 (203)
                      +.+.+
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            88753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=6.8e-24  Score=150.74  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      .|+++|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887765544444444333444433 13567899999999988888888899999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHH------HcCCeEEEEecCCCCCHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-AEDVVEFAE------DQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~sa~~~~~i~~~  181 (203)
                      |+++....... ..+..+..   .++|+++|+||+|+....... .+....+..      ...++++++|+++|.|+.++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            99874321111 11222222   468999999999986421101 111111111      12367999999999999999


Q ss_pred             HHHHHHHHH
Q 048709          182 FFRLLQEIY  190 (203)
Q Consensus       182 ~~~i~~~~~  190 (203)
                      +++|.+...
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=9.6e-24  Score=172.16  Aligned_cols=183  Identities=22%  Similarity=0.190  Sum_probs=125.8

Q ss_pred             CCCCCCccccccccccCCCCC------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEE
Q 048709            4 EMSGDGTDHRHQQQDKMIPDK------IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKI   76 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   76 (203)
                      +.|+.|++++...+....+..      ....++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+..++..
T Consensus       181 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~  260 (472)
T PRK03003        181 ALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT  260 (472)
T ss_pred             cCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE
Confidence            456777777765555444321      234699999999999999999999998753 3334555566655666666654


Q ss_pred             EEEEEEeCCCc----------hhhhhhh-HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQ----------ERYRAVT-SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~----------~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  145 (203)
                        +.+|||||.          +.+..+. ..+++.+|++++|+|++++.++..+. ++..+..   .++|+++|+||+|+
T Consensus       261 --~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl  334 (472)
T PRK03003        261 --WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDL  334 (472)
T ss_pred             --EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECccc
Confidence              579999994          2333332 24678999999999999987776663 3343333   57899999999999


Q ss_pred             CcccCC--CHHHHHHH-HHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          146 VDMWAV--SAEDVVEF-AEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       146 ~~~~~~--~~~~~~~~-~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .+....  ..+++.+. .....++++++||++|.|++++|+.+.+.+...
T Consensus       335 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        335 VDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             CChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            652110  11122221 122347899999999999999999998876543

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.7e-23  Score=138.09  Aligned_cols=156  Identities=24%  Similarity=0.462  Sum_probs=129.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+.+|..++||||++..|+....... .||++..  ..++++  +++.+++||.+|++..+.+|+.||.+..++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFn--vetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN--VETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccc-cccccee--EEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            379999999999999999999987665333 3665544  444444  56889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~  180 (203)
                      |+|..+.+..+..+..+..+..... ...|+++.+||.|++.  ...++++..+....     .+.+.++++.+|.|+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence            9999998888888777666655544 6799999999999998  67888888876543     35689999999999999


Q ss_pred             HHHHHHHHH
Q 048709          181 AFFRLLQEI  189 (203)
Q Consensus       181 ~~~~i~~~~  189 (203)
                      -|.|+.+.+
T Consensus       169 glswlsnn~  177 (180)
T KOG0071|consen  169 GLSWLSNNL  177 (180)
T ss_pred             HHHHHHhhc
Confidence            999998764

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.6e-23  Score=159.59  Aligned_cols=155  Identities=17%  Similarity=0.105  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYRGA  101 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~~  101 (203)
                      +|+++|.+|+|||||+|+|++.+....+....++......+...+. .++.+|||||.....        .....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998865433222222222233322222 468999999964321        1134567899


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDT  180 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~  180 (203)
                      |++++|+|+++..+..  ..++..+..   .+.|+++|+||+|+.+.. ...+....++...+. +++++||++|.|+++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKD-KLLPLIDKYAILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHH-HHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            9999999999866553  233333333   468999999999986421 122333444444444 799999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      +++++.+.+.+
T Consensus       155 L~~~l~~~l~~  165 (270)
T TIGR00436       155 LAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHhCCC
Confidence            99999887654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2e-23  Score=151.97  Aligned_cols=148  Identities=17%  Similarity=0.193  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   94 (203)
                      .+|+++|.+++|||||+++|+.  +.+....            ..+.+.+.......++...+.+.+|||||++.|....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999987  4433222            1223344444444455556789999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCCe
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGLF  166 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  166 (203)
                      ..+++++|++++|+|+++.. +.....++..+..   .++|+++++||+|+..... ...+++.++..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2222233333322   4789999999999965321 12334444442       23678


Q ss_pred             EEEEecCCCCCHHH
Q 048709          167 FSEASALNGDNVDT  180 (203)
Q Consensus       167 ~~~~sa~~~~~i~~  180 (203)
                      ++++||++|.|+.+
T Consensus       159 iv~~Sa~~g~~~~~  172 (194)
T cd01891         159 VLYASAKNGWASLN  172 (194)
T ss_pred             EEEeehhccccccc
Confidence            99999999987743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1.2e-23  Score=150.49  Aligned_cols=155  Identities=22%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----hhh---hHhhhcCCcEEE
Q 048709           33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----RAV---TSAYYRGALGAV  105 (203)
Q Consensus        33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d~~i  105 (203)
                      ++|++|||||||+++|.+.+......+.++..+....+.+++ ...+.+|||||....    ..+   ...+++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999875322223333344434444441 356799999996321    112   234578899999


Q ss_pred             EEEeCCCH------HHHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709          106 VVYDITKR------QSFDHVARGVEELRAHAD-------SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       106 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      +|+|++++      .++.....|...+.....       .+.|+++|+||+|+..................+.+++++||
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777666654432       37899999999999764333222223344456678999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 048709          173 LNGDNVDTAFFRLLQE  188 (203)
Q Consensus       173 ~~~~~i~~~~~~i~~~  188 (203)
                      +++.|++++++++...
T Consensus       160 ~~~~gl~~l~~~l~~~  175 (176)
T cd01881         160 KTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhcCHHHHHHHHHhh
Confidence            9999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=4.5e-23  Score=144.69  Aligned_cols=146  Identities=22%  Similarity=0.222  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYR   99 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~   99 (203)
                      ++|+++|++|+|||||++++++..... ...+..+..........++  ..+.+|||||...+..        ....++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999876532 2223433444444444443  5689999999644321        1234678


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      .+|++++|+|++++.+......+..      ..+.|+++++||+|+.+....       .......+++++||+++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998766655533322      357899999999999764322       344556789999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          180 TAFFRLLQEI  189 (203)
Q Consensus       180 ~~~~~i~~~~  189 (203)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.9e-22  Score=160.74  Aligned_cols=158  Identities=20%  Similarity=0.177  Sum_probs=116.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHh---hhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVTSA---YYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~---~~~~~d  102 (203)
                      .|+++|.|+||||||+++|++.+......+.++..+....+.++. ...+++||+||...    ...+...   ++..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            899999999999999999998765444445555555555555441 34689999999632    1122233   356799


Q ss_pred             EEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709          103 GAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus       103 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      ++++|+|+++.   +.++....|...+.....  .+.|+++|+||+|+..    ..+.+.++....+.+++++||+++.|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   566666677777766543  4789999999999843    23455666666668899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 048709          178 VDTAFFRLLQEIYAL  192 (203)
Q Consensus       178 i~~~~~~i~~~~~~~  192 (203)
                      +++++++|.+.+...
T Consensus       315 I~eL~~~L~~~l~~~  329 (424)
T PRK12297        315 LDELLYAVAELLEET  329 (424)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999888664

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=4.9e-23  Score=138.38  Aligned_cols=114  Identities=30%  Similarity=0.551  Sum_probs=88.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCc--cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFC--FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      ||+|+|.+|||||||+++|++....  ....++.+.+..............+.+||++|++.+......++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22233444555555666777777799999999998888877889999999999


Q ss_pred             EeCCCHHHHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 048709          108 YDITKRQSFDHVARG---VEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                      ||++++.+++.+..+   +..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999997555   44444433 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.91  E-value=8e-23  Score=147.79  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=109.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCC----------------cceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKST----------------IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      +|+|+|.+|+|||||+++|++..........                .+.......+...  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            4899999999999999999987765443221                1222222223332  467899999999888888


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHH---------
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAED---------  162 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---------  162 (203)
                      +..++..+|++++|+|+.++.+.... .++..+..   .+.|+++++||+|+.....  ...+.+.+....         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            88899999999999999876543322 33333332   5789999999999975211  112333344333         


Q ss_pred             -----cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          163 -----QGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       163 -----~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                           ...+++++||++|.|+++++.++.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 357899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=6.4e-23  Score=166.15  Aligned_cols=182  Identities=21%  Similarity=0.180  Sum_probs=120.9

Q ss_pred             CCCCCCccccccccccCCCCC------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEE
Q 048709            4 EMSGDGTDHRHQQQDKMIPDK------IDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKI   76 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   76 (203)
                      +.|+.|++++........+..      ....++|+++|.+|+|||||+|+|++.+... ...+.++.+.....+..++. 
T Consensus       142 a~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-  220 (429)
T TIGR03594       142 AEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK-  220 (429)
T ss_pred             CCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-
Confidence            445666666655544443221      2345899999999999999999999876432 22233444444444555553 


Q ss_pred             EEEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQERYRAV-----------TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  145 (203)
                       .+.+|||||...+...           ...+++.+|++++|+|++++.+.... .++..+..   .+.|+++|+||+|+
T Consensus       221 -~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl  295 (429)
T TIGR03594       221 -KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDL  295 (429)
T ss_pred             -EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECccc
Confidence             6789999996433211           12368899999999999987665554 23333332   47899999999999


Q ss_pred             CcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          146 VDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ... ....++..+....     ..++++++||++|.|++++|+++.+.+...
T Consensus       296 ~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       296 VKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             CCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            721 1122233222221     247899999999999999999999876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=7.5e-23  Score=160.16  Aligned_cols=156  Identities=21%  Similarity=0.287  Sum_probs=108.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhh-------Hh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVT-------SA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~~   96 (203)
                      ...++|+++|.+|||||||+|+|++..+....+ +.++.......+..++  .++.+|||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999988753221 2222333334445554  4679999999742 22211       23


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASAL  173 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~  173 (203)
                      .+.++|++++|+|..+.  +.... .++..+..   .+.|.++|+||+|+.+.   ...++.+++....  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            47899999999998752  33332 34444433   24677889999998652   2456666665544  679999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~  191 (203)
                      +|.|+++++++|.+.+.+
T Consensus       200 tg~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKI  217 (339)
T ss_pred             CccCHHHHHHHHHHhCCC
Confidence            999999999999887654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.1e-22  Score=162.13  Aligned_cols=154  Identities=24%  Similarity=0.219  Sum_probs=115.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TSA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~   96 (203)
                      ...++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            35689999999999999999999987643 23334555666666666766  45689999997543321        235


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      +++.+|++++|+|++++.+++..  |+..+..   .+.|+++|+||+|+...      +...++...+.+++++||++ .
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~  346 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-L  346 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-C
Confidence            78999999999999988776654  5554432   46899999999999652      12344566778899999998 6


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 048709          177 NVDTAFFRLLQEIYALS  193 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~~  193 (203)
                      |++++++.+.+.+.+..
T Consensus       347 gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       347 KIKALVDLLTQKINAFY  363 (442)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=1.3e-22  Score=147.45  Aligned_cols=159  Identities=16%  Similarity=0.087  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC----CCc---cCCCCCcceeeEEEEEEEC------------CEEEEEEEEeCCCchh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN----EFC---FDSKSTIGVEFQTRTVTIN------------SKIIKAQIWDTAGQER   89 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~g~~~   89 (203)
                      ++|+++|++++|||||+++|+..    .+.   .+..+..+.......+.+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111   1111222233332223332            3357899999999876


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHH------
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAE------  161 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------  161 (203)
                      +........+.+|++++|+|+++.........+.  +...  .+.|+++++||+|+.....  ...+++.+.+.      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5443334456789999999998743333222221  1121  2569999999999864211  11223322211      


Q ss_pred             -HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          162 -DQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       162 -~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                       ..+++++++||++|.|++++++++.+.+..
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             235789999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK11058 GTPase HflX; Provisional

Probab=99.90  E-value=3e-22  Score=160.45  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=114.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--hhhhH------hhhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--RAVTS------AYYRG  100 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~------~~~~~  100 (203)
                      .+|+++|.+|+|||||+|+|++.+......+..+.++....+.+.+. ..+.+|||+|....  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            68999999999999999999998766555556666666666666542 25789999997331  22222      23689


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVD  179 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~  179 (203)
                      +|++++|+|++++.+++.+..|...+......++|+++|+||+|+.....   ....  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999988777765554444444445789999999999864211   1111  1123444 5889999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      +++++|.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998854

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.1e-22  Score=166.01  Aligned_cols=156  Identities=22%  Similarity=0.187  Sum_probs=108.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~   96 (203)
                      ....+|+|+|.+|||||||+|+|++..... ...+..+.+........++  ..+.+|||||.+.        +......
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            445799999999999999999999876542 2333334444444444554  3578999999652        3334556


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      +++.+|++++|+|+++..+... ..+...+..   .++|+++|+||+|+...   ..+....+....+ ..+++||++|.
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~  185 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGR  185 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCC
Confidence            7899999999999998655433 233333332   47899999999998642   1122222222223 35789999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEIYA  191 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~  191 (203)
                      |++++|+++++.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988755

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=3.3e-22  Score=161.28  Aligned_cols=164  Identities=19%  Similarity=0.084  Sum_probs=115.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRG  100 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~  100 (203)
                      ...|+|+|.||||||||+|+|++.+......+.++..+....+.+.+  .++++||+||....       ....-.++..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            36799999999999999999998765554445555666666666655  46899999995321       1112235678


Q ss_pred             CcEEEEEEeCCCH----HHHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC
Q 048709          101 ALGAVVVYDITKR----QSFDHVARGVEELRAHA-----------DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL  165 (203)
Q Consensus       101 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  165 (203)
                      +|++++|+|+++.    +.+..+..+...+....           ....|+++|+||+|+++... ..+.+.......++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~  315 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGW  315 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCC
Confidence            9999999999752    23334444434443332           14689999999999975322 12333444455678


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          166 FFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      +++++||+++.|+++++.+|.+.+...+.
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999998876543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.5e-22  Score=163.69  Aligned_cols=149  Identities=20%  Similarity=0.208  Sum_probs=112.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hHhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TSAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   97 (203)
                      ..++|+++|.+|+|||||+|+|++.+.. ....+.++.++....+.+++  ..+.+|||||...+...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987753 33335555666666666665  45799999997644322        2346


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +..+|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++||++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            889999999999998877665433322      3578999999999997532211        34456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIYA  191 (203)
Q Consensus       178 i~~~~~~i~~~~~~  191 (203)
                      ++++++++.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.90  E-value=1.8e-22  Score=142.10  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc-----hhhhhhhHhhhcCCcEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ-----ERYRAVTSAYYRGALGA  104 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~~~~~~~~~~~~~d~~  104 (203)
                      +|+++|.+|+|||||+|+|.+... . ...       +....+...    .+|||||.     ..+..+. ..+..+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~-------~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARK-------TQAVEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-c-Ccc-------ceEEEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence            799999999999999999886532 1 111       122223222    26999996     2222222 347899999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--eEEEEecCCCCCHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--FFSEASALNGDNVDTAF  182 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~  182 (203)
                      ++|+|+++..++..  .|+..+    ..+.|+++++||+|+.+   ...+.+.+++...++  |++++||++|.|++++|
T Consensus        69 l~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         69 IYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            99999998766422  333322    24678999999999864   345667777777774  89999999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      +++.+.+...
T Consensus       140 ~~l~~~~~~~  149 (158)
T PRK15467        140 DYLASLTKQE  149 (158)
T ss_pred             HHHHHhchhh
Confidence            9998877543

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=6e-22  Score=144.30  Aligned_cols=164  Identities=17%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----------hh
Q 048709           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----------ER   89 (203)
Q Consensus        20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~   89 (203)
                      +.....+..++|+++|.+|+|||||+++|++.++.....++.+.+........   ...+.+|||||.          ..
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~   92 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEK   92 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHH
Confidence            44455567899999999999999999999987644333344444333333222   257899999993          34


Q ss_pred             hhhhhHhhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHcC
Q 048709           90 YRAVTSAYYRGA---LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQG  164 (203)
Q Consensus        90 ~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~  164 (203)
                      +..+...++...   +++++|+|++++.+.... .....+.   ..++|+++++||+|+.+..+.  ..+++...+....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~  168 (196)
T PRK00454         93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD  168 (196)
T ss_pred             HHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence            444555566544   678888888765333221 1112222   146889999999998653221  1223444444446


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          165 LFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       165 ~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .+++++||++|.|++++++.|.+.+.
T Consensus       169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        169 DEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999998876653

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=1.3e-22  Score=142.43  Aligned_cols=146  Identities=18%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhcCCc
Q 048709           32 VVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYRGAL  102 (203)
Q Consensus        32 ~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d  102 (203)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||...+..        ....++..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532 12223333333444444444  5689999999766433        3345678899


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTA  181 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~  181 (203)
                      ++++|+|+.+..+.... .....+..   .+.|+++|+||+|+.+....     ...+...+. +++++|+++|.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999875443332 22222222   35899999999999763211     233344555 7899999999999999


Q ss_pred             HHHHHHH
Q 048709          182 FFRLLQE  188 (203)
Q Consensus       182 ~~~i~~~  188 (203)
                      ++++.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=8.1e-22  Score=156.29  Aligned_cols=160  Identities=17%  Similarity=0.073  Sum_probs=115.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d  102 (203)
                      .|+++|.||||||||+|+|++.+......+.++..+..-.+.+++ ...+.++||||...-       ......++..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999998765555445555666666665542 235899999996431       122234578999


Q ss_pred             EEEEEEeCC---CHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCC
Q 048709          103 GAVVVYDIT---KRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNG  175 (203)
Q Consensus       103 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~  175 (203)
                      ++++|+|++   +.+.++....|+..+.....  .+.|+++|+||+|+...... .+.+.++....+  .+++.+||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   44566666677776665432  46899999999998653222 233444444433  47899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEIYA  191 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~  191 (203)
                      .|+++++++|.+.+.+
T Consensus       319 ~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        319 LGVKELCWDLMTFIEE  334 (390)
T ss_pred             cCHHHHHHHHHHHhhh
Confidence            9999999999988865

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-21  Score=131.16  Aligned_cols=172  Identities=23%  Similarity=0.299  Sum_probs=137.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccC--CCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhh-hhhhHhhhcCCc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD--SKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERY-RAVTSAYYRGAL  102 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d  102 (203)
                      ...||+|+|..++|||+++++|..++..+.  ..+|. .+.+...+.. .+..-++.|+||.|...+ ..+-+.|+..+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            458999999999999999999987654433  33444 3444444433 455567899999997666 667788999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ++++||+..+++||+.+..+-..+.+... ..+|+++++||+|+.+++++..+.+..+++...+..+++++.+..++-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999887555445544433 67999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh-cccccc
Q 048709          182 FFRLLQEIYALS-KKELEC  199 (203)
Q Consensus       182 ~~~i~~~~~~~~-~~~~~~  199 (203)
                      |..+...+...+ +..++.
T Consensus       167 f~~l~~rl~~pqskS~Fpl  185 (198)
T KOG3883|consen  167 FTYLASRLHQPQSKSTFPL  185 (198)
T ss_pred             HHHHHHhccCCcccccCcc
Confidence            999998887643 344443

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=5.7e-22  Score=164.80  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------CccCCCC------CcceeeEEEEEE--E---CCEEEEEEEEeCCCchh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE-------FCFDSKS------TIGVEFQTRTVT--I---NSKIIKAQIWDTAGQER   89 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~l~D~~g~~~   89 (203)
                      -.+|+++|+.++|||||+++|+...       +...+..      ..+.+.....+.  +   ++..+.++||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3689999999999999999998642       1111111      123444333332  2   46678999999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---e
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---F  166 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  166 (203)
                      |......++..+|++++|+|+++..+......|...+.    .++|+++++||+|+.+.  ...+...++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~--~~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSA--DPERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCcc--CHHHHHHHHHHHhCCCcce
Confidence            99888999999999999999998665555555543322    36799999999998652  122223344444554   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          167 FSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       167 ~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++++||++|.|++++|++|.+.+...
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~p  182 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPPP  182 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCCC
Confidence            89999999999999999999887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04163 Era Era subfamily

Probab=99.89  E-value=9.9e-22  Score=138.94  Aligned_cols=156  Identities=21%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYR   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   99 (203)
                      ..+|+++|++|+|||||++++.+.+.................. .......+.+|||||.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999887643332222222222222 22234578999999964332        22344678


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNV  178 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i  178 (203)
                      .+|++++|+|++++.+.. ...+...+..   .+.|+++++||+|+........+....+.... ..+++++|++++.|+
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            999999999999862211 1222233332   26789999999999742222233333343434 368999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          179 DTAFFRLLQE  188 (203)
Q Consensus       179 ~~~~~~i~~~  188 (203)
                      ++++++|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=1.9e-22  Score=135.38  Aligned_cols=167  Identities=23%  Similarity=0.416  Sum_probs=146.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      -.+||.++|.+..|||||+-.+.+.+++.++..+.|..+..+.+.+.+..+.+.+||.+|++++..+.+...+++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            46999999999999999999999999998888999999999999999999999999999999999999998999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----CCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----VSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      +||.+.++++..+..|+.+....+..-+|+ +|+||.|..-.-.     ......+.+++-...+.++||+....|+..+
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI  177 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI  177 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence            999999999999999999988877666776 6799999753211     1223456777888999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 048709          182 FFRLLQEIYALSK  194 (203)
Q Consensus       182 ~~~i~~~~~~~~~  194 (203)
                      |..++.++.+..-
T Consensus       178 FK~vlAklFnL~~  190 (205)
T KOG1673|consen  178 FKIVLAKLFNLPW  190 (205)
T ss_pred             HHHHHHHHhCCce
Confidence            9999999887543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.89  E-value=7.8e-22  Score=141.77  Aligned_cols=150  Identities=19%  Similarity=0.211  Sum_probs=99.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----------hhhhh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----------ERYRA   92 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   92 (203)
                      .+....++|+++|.+|+|||||+|+|++........++.+.+.....+..++   .+.+|||||.          ..+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3446779999999999999999999998763333334444433333333332   5899999994          23444


Q ss_pred             hhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHcC--C
Q 048709           93 VTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQG--L  165 (203)
Q Consensus        93 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~--~  165 (203)
                      +...|++.   ++++++|+|++++-+.... .++..+..   .+.|+++++||+|+....  ....+++++.+...+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            44455553   5799999999875443333 22233322   478999999999986431  122344555555543  4


Q ss_pred             eEEEEecCCCCCHH
Q 048709          166 FFSEASALNGDNVD  179 (203)
Q Consensus       166 ~~~~~sa~~~~~i~  179 (203)
                      +++++||++|.|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            79999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=1.1e-21  Score=151.25  Aligned_cols=159  Identities=21%  Similarity=0.170  Sum_probs=105.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYR   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   99 (203)
                      --.|+|+|.+|||||||+|+|++.+.........++......+... ...++.+|||||.....        ......+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3569999999999999999999988764443332232222222222 23678999999954322        22334678


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNV  178 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i  178 (203)
                      .+|++++|+|+++..+. .....+..+.   ..+.|+++|+||+|+..........+..+....+ .+++++||+++.|+
T Consensus        84 ~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         84 DVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             cCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            99999999999883211 1112222222   2468999999999997422222333444444333 67999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIYA  191 (203)
Q Consensus       179 ~~~~~~i~~~~~~  191 (203)
                      +++++++.+.+..
T Consensus       160 ~~L~~~L~~~l~~  172 (292)
T PRK00089        160 DELLDVIAKYLPE  172 (292)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999988754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.89  E-value=1.6e-21  Score=161.53  Aligned_cols=151  Identities=20%  Similarity=0.254  Sum_probs=112.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      .+..+|+++|++++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            45689999999999999999999988776655444444444444555332 26899999999999998888899999999


Q ss_pred             EEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709          106 VVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL  173 (203)
Q Consensus       106 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  173 (203)
                      +|+|+++.   ++.+.+    ....   ..++|+++++||+|+.+.   ..+++.+.+...+         .+++++||+
T Consensus       164 LVVda~dgv~~qT~e~i----~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI----SHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EEEECCCCCCHhHHHHH----HHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            99999873   333222    2222   247899999999998642   3444544443332         479999999


Q ss_pred             CCCCHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQ  187 (203)
Q Consensus       174 ~~~~i~~~~~~i~~  187 (203)
                      +|.|++++++++..
T Consensus       234 tGeGI~eLl~~I~~  247 (587)
T TIGR00487       234 TGDGIDELLDMILL  247 (587)
T ss_pred             CCCChHHHHHhhhh
Confidence            99999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=5.1e-21  Score=136.28  Aligned_cols=155  Identities=21%  Similarity=0.188  Sum_probs=103.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------hhh-hH
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------RAV-TS   95 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~-~~   95 (203)
                      +++|+++|.+|+|||||+++|++..... ...+..+.......+..++.  .+.+|||||....          ... ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5899999999999999999999876432 22233333333344445543  4689999995332          111 12


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-HHc----CCeEEEE
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-EDQ----GLFFSEA  170 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~  170 (203)
                      .++..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+........+...+.. ...    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            356789999999999987665443 22222222   46899999999998764212223322322 222    3689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~  188 (203)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=145.88  Aligned_cols=158  Identities=22%  Similarity=0.190  Sum_probs=113.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHhhhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VTSAYYR   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~   99 (203)
                      ---|+++|.|++|||||+|+|++.+.+..++...++......+...+ ..++.|+||||.....+        .....+.
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            45799999999999999999999999988776766766666665554 56899999999544332        2234578


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-c-CCeEEEEecCCCCC
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-Q-GLFFSEASALNGDN  177 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~~sa~~~~~  177 (203)
                      .+|+++||+|+++...-.+ ...++.+..   .+.|+++++||+|........ ....+++.. . ...++++||++|.|
T Consensus        85 dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~n  159 (298)
T COG1159          85 DVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGDN  159 (298)
T ss_pred             cCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccCC
Confidence            9999999999998432211 122233332   467999999999987643311 233333322 2 24699999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIYA  191 (203)
Q Consensus       178 i~~~~~~i~~~~~~  191 (203)
                      ++.+.+.+...+.+
T Consensus       160 ~~~L~~~i~~~Lpe  173 (298)
T COG1159         160 VDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999888887755

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.88  E-value=4.2e-21  Score=140.42  Aligned_cols=117  Identities=21%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC-cEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA-LGAVVVY  108 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~  108 (203)
                      +|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998775554322 2222222222223456789999999999988888899998 9999999


Q ss_pred             eCCCH-HHHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCc
Q 048709          109 DITKR-QSFDHVARGVEELRAH---ADSSIRIILIGNKSDLVD  147 (203)
Q Consensus       109 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~  147 (203)
                      |+.+. .++..+..++..+...   ...++|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6777776666554332   225899999999999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=1.1e-21  Score=143.56  Aligned_cols=161  Identities=17%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeE--EEEE-----------------------EEC--C----
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQ--TRTV-----------------------TIN--S----   74 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~--~~~~-----------------------~~~--~----   74 (203)
                      ++|+++|+.|+|||||+.+|.+...+.   ......+....  ...+                       .+.  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            579999999999999999997642111   11111111111  0000                       000  0    


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CC
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VS  152 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~  152 (203)
                      ...++.||||||++.+.......+..+|++++|+|++++.........+..+...  ...|+++++||+|+.+...  ..
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1257899999999888777777788899999999998731111111222222222  2347899999999975211  11


Q ss_pred             HHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          153 AEDVVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       153 ~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      .+++.+++...   +++++++||++|.|++++++++.+.+..
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            23344444432   5789999999999999999999876643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=3.4e-21  Score=163.96  Aligned_cols=181  Identities=18%  Similarity=0.174  Sum_probs=122.2

Q ss_pred             CCCCCCccccccccccCCCCC--------CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECC
Q 048709            4 EMSGDGTDHRHQQQDKMIPDK--------IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINS   74 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~   74 (203)
                      +.|+.|++++...+....+..        .+..++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+.+++
T Consensus       418 A~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~  497 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG  497 (712)
T ss_pred             CCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC
Confidence            456667766665444433221        123589999999999999999999998753 23334445555555566666


Q ss_pred             EEEEEEEEeCCCch----------hhhhhh-HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           75 KIIKAQIWDTAGQE----------RYRAVT-SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        75 ~~~~~~l~D~~g~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      ..  +.+|||||..          .+..+. ..+++.+|++++|+|+++..+..... ++..+..   .++|+++|+||+
T Consensus       498 ~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~  571 (712)
T PRK09518        498 ED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKW  571 (712)
T ss_pred             CE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEch
Confidence            54  5799999942          222221 23578999999999999887766653 3333333   478999999999


Q ss_pred             CCCcccCCCHHHHHHHHH-H----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          144 DLVDMWAVSAEDVVEFAE-D----QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~-~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |+.+..  ..+...+... .    ...+++.+||++|.|++++++.+.+.+...
T Consensus       572 DL~~~~--~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        572 DLMDEF--RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             hcCChh--HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            997521  1222222222 1    135689999999999999999998887654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.7e-22  Score=137.11  Aligned_cols=161  Identities=24%  Similarity=0.364  Sum_probs=125.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC---CccC--CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE---FCFD--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      .+.|+++|..++|||||+.++...-   +...  ..-++++....-++.+.  ...+.+||.+|++..+++|..||..++
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H   94 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAH   94 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--cceeEEEEcCChHHHHHHHHHHHHHhc
Confidence            4889999999999999999875421   1111  11122233333344444  456899999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH------HcCCeEEEEecCCC
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE------DQGLFFSEASALNG  175 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~sa~~~  175 (203)
                      ++|+++|+++++.++.....++.+..... .++|+++.+||.|+.+  .+...++.....      +...++.++||.+|
T Consensus        95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~--~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN--AMEAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh--hhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            99999999999999998877777766555 8999999999999987  445555554443      23468999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 048709          176 DNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~  192 (203)
                      .||++..+|++..+...
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999988775

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=2.4e-21  Score=157.21  Aligned_cols=158  Identities=21%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------hhh-h
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------RAV-T   94 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~-~   94 (203)
                      ..++|+++|.+|+|||||+|+|++.+.. ....+..+.+.....+..++  ..+.+|||||....          ... .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4699999999999999999999987643 22233333333333344444  45789999995321          111 1


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEE
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSE  169 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~  169 (203)
                      ..++..+|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+..  ..+++.+...     ...+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEEE
Confidence            2367899999999999987665544 23333332   468999999999987421  1222222221     13478999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHh
Q 048709          170 ASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +||++|.|+.++++.+.+.....
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988766543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=4.2e-21  Score=159.50  Aligned_cols=156  Identities=18%  Similarity=0.191  Sum_probs=117.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +.|+++|.+++|||||+++|++..   +..+..+..+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999743   3334445556665555566655  67899999999999888888899999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC--CHHHHHHHHHHc----CCeEEEEecCCC
Q 048709          106 VVYDITK---RQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV--SAEDVVEFAEDQ----GLFFSEASALNG  175 (203)
Q Consensus       106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~  175 (203)
                      +|+|+++   +++.+.+.    .+..   .++| +++++||+|+.+....  ..+++.+++...    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999998   45544432    2222   3567 9999999999764321  234555665554    578999999999


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 048709          176 DNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~~  193 (203)
                      .|++++++.+.+.+....
T Consensus       152 ~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       152 QGIGELKKELKNLLESLD  169 (581)
T ss_pred             CCchhHHHHHHHHHHhCC
Confidence            999999998887766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=1.8e-21  Score=152.54  Aligned_cols=184  Identities=21%  Similarity=0.167  Sum_probs=128.5

Q ss_pred             CCCCCCCccccccccccCCC-CC---C---CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECC
Q 048709            3 KEMSGDGTDHRHQQQDKMIP-DK---I---DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINS   74 (203)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~   74 (203)
                      +++|+.|+++++......+| ..   .   ..+++|+++|.|++|||||+|+|++.+..... .+.++.+.-...+..++
T Consensus       146 SA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~  225 (444)
T COG1160         146 SAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG  225 (444)
T ss_pred             ehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC
Confidence            46799999998888777752 11   1   14699999999999999999999998876554 23333444444444445


Q ss_pred             EEEEEEEEeCCCchhhhhh-----------hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           75 KIIKAQIWDTAGQERYRAV-----------TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                        ..+.++||+|...-...           ....+..+|++++|+|++.+-+-++.+ ....+.+   .+.++++++|||
T Consensus       226 --~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKW  299 (444)
T COG1160         226 --RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKW  299 (444)
T ss_pred             --eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEcc
Confidence              45789999994322111           123478899999999999976655442 2222222   578899999999


Q ss_pred             CCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          144 DLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |+.+..+...++.++....     ...+++.+||++|.++.++|+.+.+.....
T Consensus       300 Dl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         300 DLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             ccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            9977544555555444433     235899999999999999998887766554

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.87  E-value=6.9e-21  Score=160.06  Aligned_cols=154  Identities=18%  Similarity=0.208  Sum_probs=112.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCccee--eEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE--FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .+...|+|+|.+++|||||+++|.+..+.....+..+.+  .+...+..++....+.||||||+..|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            456899999999999999999999877654433333322  222333344455789999999999999999999999999


Q ss_pred             EEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-------HcC--CeEEEEe
Q 048709          104 AVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-------DQG--LFFSEAS  171 (203)
Q Consensus       104 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~--~~~~~~s  171 (203)
                      +++|+|+++.   ++++.+    ..+   ...++|+++++||+|+.+.   ..+++.+.+.       .++  ++++++|
T Consensus       322 aILVVDA~dGv~~QT~E~I----~~~---k~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI----NYI---QAANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEECcCCCChhhHHHH----HHH---HhcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            9999999874   333332    222   2257899999999999752   2333333222       223  6899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~  189 (203)
                      |++|.|++++++++....
T Consensus       392 AktG~GIdeLle~I~~l~  409 (742)
T CHL00189        392 ASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCCHHHHHHhhhhhh
Confidence            999999999999988754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.87  E-value=7e-21  Score=158.35  Aligned_cols=146  Identities=19%  Similarity=0.180  Sum_probs=110.0

Q ss_pred             cCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh------hHhhh--cCCcEEEE
Q 048709           35 GDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV------TSAYY--RGALGAVV  106 (203)
Q Consensus        35 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~  106 (203)
                      |.+|+|||||+|+|++......+.+..+.+.....+.+++.  ++++|||||..++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998776666666666666666666654  5789999998766542      33443  37899999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+|+++.+..   ..+...+.   ..++|+++++||+|+.+..... .+..++.+..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875432   12222222   2478999999999997644443 356777888899999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=1.8e-20  Score=152.12  Aligned_cols=147  Identities=23%  Similarity=0.193  Sum_probs=104.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhhhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAYYR   99 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   99 (203)
                      .+|+++|.+|+|||||+|+|.+.... ....+..+.+.......+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987753 22224444455555556655  6789999999765        2223445788


Q ss_pred             CCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCC
Q 048709          100 GALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGD  176 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~  176 (203)
                      .+|++++|+|++++.+..  .+..|+.   .   .+.|+++|+||+|..+.    .+...++ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998753332  2233332   2   37899999999997541    2233333 34455 48999999999


Q ss_pred             CHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQE  188 (203)
Q Consensus       177 ~i~~~~~~i~~~  188 (203)
                      |+.++++.+.+.
T Consensus       149 gv~~l~~~I~~~  160 (435)
T PRK00093        149 GIGDLLDAILEE  160 (435)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999873

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.86  E-value=2.7e-21  Score=140.05  Aligned_cols=159  Identities=22%  Similarity=0.253  Sum_probs=106.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccC------------------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFD------------------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      .++|+++|+.++|||||+++|....-...                  .....+..........+.....+.++||||+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            58999999999999999999975431110                  111222333333333123446789999999998


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHH-HHHHHc----
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVV-EFAEDQ----  163 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~----  163 (203)
                      |.......+..+|++|+|+|+.+.-... ....+..+..   .++|+++++||+|+...+. ...+++. .+.+..    
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             eeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            8887778899999999999998753322 2233333333   4788999999999973210 1112222 232222    


Q ss_pred             --CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          164 --GLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       164 --~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                        .++++++||++|.|++++++.+.+.++
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              358999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=1.4e-20  Score=159.49  Aligned_cols=152  Identities=21%  Similarity=0.256  Sum_probs=111.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ..+...|+|+|..++|||||+++|.+..+........+.+.....+.+++  ..++||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            45678999999999999999999998776554434433444444444544  5689999999999999998889999999


Q ss_pred             EEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH-------HHHcC--CeEEEEec
Q 048709          105 VVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF-------AEDQG--LFFSEASA  172 (203)
Q Consensus       105 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~sa  172 (203)
                      ++|+|+++.   ++.+.+    ..+   ...++|+++++||+|+.+.   ..+.+...       +..++  ++++++||
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a---~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA  434 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHA---KAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSA  434 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHH---HhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence            999999873   333322    222   2257899999999999652   22333222       12233  68999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 048709          173 LNGDNVDTAFFRLLQE  188 (203)
Q Consensus       173 ~~~~~i~~~~~~i~~~  188 (203)
                      ++|.|+++++++|...
T Consensus       435 ktG~GI~eLle~I~~~  450 (787)
T PRK05306        435 KTGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCCchHHHHhhhhh
Confidence            9999999999998754

>cd00880 Era_like Era (E

Probab=99.86  E-value=5.9e-21  Score=133.78  Aligned_cols=151  Identities=19%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHhhhcCCcEE
Q 048709           33 VIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-------VTSAYYRGALGA  104 (203)
Q Consensus        33 vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~  104 (203)
                      ++|++|||||||+++|++.... .......+............ ...+.+||+||...+..       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 33333333333333333321 45789999999655432       334578999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE---DVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ++|+|+.+........ +.....   ..+.|+++++||+|+.........   ...........+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876655543 222222   257899999999998763222111   112233445678999999999999999


Q ss_pred             HHHHHHH
Q 048709          182 FFRLLQE  188 (203)
Q Consensus       182 ~~~i~~~  188 (203)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.86  E-value=4.9e-20  Score=127.74  Aligned_cols=156  Identities=24%  Similarity=0.387  Sum_probs=119.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc--------cCCCC--CcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC--------FDSKS--TIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSA   96 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~   96 (203)
                      ...||+|.|+.++||||+++++......        .....  ..++....-.+.+++ ...+.|+||||+++|+.+|..
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~~   87 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEI   87 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHHH
Confidence            4689999999999999999999887631        11111  122222222222222 246899999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc--CCeEEEEecCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ--GLFFSEASALN  174 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~  174 (203)
                      ++++++++|+++|.+.+..+ .....++.+....  .+|+++.+||.|+.+  ..+.+.+++.....  .++++..+|.+
T Consensus        88 l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e  162 (187)
T COG2229          88 LSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATE  162 (187)
T ss_pred             HhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeeccc
Confidence            99999999999999998887 4444444444432  299999999999998  66888898888776  89999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQE  188 (203)
Q Consensus       175 ~~~i~~~~~~i~~~  188 (203)
                      +.+..+.++.+...
T Consensus       163 ~~~~~~~L~~ll~~  176 (187)
T COG2229         163 GEGARDQLDVLLLK  176 (187)
T ss_pred             chhHHHHHHHHHhh
Confidence            99999998888765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=1.7e-20  Score=152.05  Aligned_cols=151  Identities=21%  Similarity=0.163  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCc--------hhhhhhhHhhhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ--------ERYRAVTSAYYRG  100 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~  100 (203)
                      +|+++|.+|+|||||+|+|++..... ...+..+.+........++  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999877432 2223444444445555555  45899999995        3344445667899


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD  179 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  179 (203)
                      +|++++|+|+.+..+.... .+...+.+   .++|+++|+||+|+......    ..+ +...++ +++++||++|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence            9999999999874333221 12222222   36899999999998754321    222 234555 79999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++++++.+.+..
T Consensus       150 ~ll~~i~~~l~~  161 (429)
T TIGR03594       150 DLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHhcCc
Confidence            999999987754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=3.6e-20  Score=154.21  Aligned_cols=160  Identities=18%  Similarity=0.197  Sum_probs=112.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc-----CC------CCCcceeeEEEE--EEE---CCEEEEEEEEeCCCch
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF-----DS------KSTIGVEFQTRT--VTI---NSKIIKAQIWDTAGQE   88 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~l~D~~g~~   88 (203)
                      +-.+|+++|+.++|||||+.+|+...  +..     ..      ..+.+.+.....  +.+   ++..+.++||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34689999999999999999997531  110     00      011122222222  222   4557889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---
Q 048709           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---  165 (203)
Q Consensus        89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  165 (203)
                      .|...+..++..+|++++|+|+++.........|....    ..++|+++++||+|+.+..  ......++....++   
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            99988889999999999999999865444444443322    1478999999999986521  12222334444454   


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          166 FFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .++++||++|.|+++++++|.+.+...
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence            389999999999999999999887654

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.85  E-value=1e-19  Score=135.66  Aligned_cols=151  Identities=23%  Similarity=0.208  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d  102 (203)
                      +|+++|.+|+|||||+++|++........+.++.+.....+.+++  ..+++||+||.....       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998765444334444555555555655  568999999964322       22345789999


Q ss_pred             EEEEEEeCCCHH-HHHHHHHHHHHH----------------------------------------H--------------
Q 048709          103 GAVVVYDITKRQ-SFDHVARGVEEL----------------------------------------R--------------  127 (203)
Q Consensus       103 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~--------------  127 (203)
                      ++++|+|++++. ....+...+...                                        .              
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 333332222211                                        0              


Q ss_pred             -----------hhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          128 -----------AHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       128 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                                 .-....+|+++|+||+|+..     .++...++..  .+++++||++|.|++++++.+.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       00113478999999999854     3444455443  4589999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.4e-21  Score=132.57  Aligned_cols=162  Identities=30%  Similarity=0.482  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++++++|..|.||||+++++..+++...+.+|.+.........-+...+++..|||.|++.+..+...|+-...+.++
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            57999999999999999999999999999999999988877766555446899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +||++..-.+.++.+|...+.+.+ .++|+++++||.|.....  .......+.+...+.++++|++.+.|+..-|-|+.
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence            999999999999999999988877 559999999999986632  22344455667788899999999999999999999


Q ss_pred             HHHHH
Q 048709          187 QEIYA  191 (203)
Q Consensus       187 ~~~~~  191 (203)
                      +++..
T Consensus       166 rKl~G  170 (216)
T KOG0096|consen  166 RKLTG  170 (216)
T ss_pred             hhhcC
Confidence            98765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=6.3e-20  Score=156.28  Aligned_cols=155  Identities=21%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~   97 (203)
                      ...+|+++|.+|+|||||+|+|++....... .+..+.+........++  ..+.+|||||...        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3578999999999999999999987653322 23333333333333333  4688999999653        23344557


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +..+|++++|+|+++.-.... ..+...+..   .++|+++|+||+|+...    .....++.....-..+++||++|.|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~----~~~~~~~~~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQAS----EYDAAEFWKLGLGEPYPISAMHGRG  423 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccc----hhhHHHHHHcCCCCeEEEECCCCCC
Confidence            899999999999986322111 133333332   57899999999998652    1122222222112467899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIYA  191 (203)
Q Consensus       178 i~~~~~~i~~~~~~  191 (203)
                      +.++++++++.+..
T Consensus       424 I~eLl~~i~~~l~~  437 (712)
T PRK09518        424 VGDLLDEALDSLKV  437 (712)
T ss_pred             chHHHHHHHHhccc
Confidence            99999999998755

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=8.9e-20  Score=155.19  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=112.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh----------hHhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV----------TSAY   97 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~   97 (203)
                      .++|+++|.+|||||||+|+|++........+.  .+...++..+.....++.+|||||..++...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            478999999999999999999987664444343  4444444444445567899999997665321          2233


Q ss_pred             h--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709           98 Y--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG  175 (203)
Q Consensus        98 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  175 (203)
                      +  ..+|++++|+|+++.+...   .+...+.+   .++|+++++||+|..+.+.. ..+..++.+..+++++++|+++|
T Consensus        81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            3  4789999999999855422   23333333   47899999999998754333 34567778889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEI  189 (203)
Q Consensus       176 ~~i~~~~~~i~~~~  189 (203)
                      .|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999998887754

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=2.8e-20  Score=123.13  Aligned_cols=161  Identities=22%  Similarity=0.381  Sum_probs=124.4

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG  100 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  100 (203)
                      ......+.+||+++|..++|||||+.+|.+.+..... ||.+  +.++.+.+++ .+.+++||.+|+...+..|..||.+
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyen   85 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYEN   85 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhc
Confidence            3444577899999999999999999999887654332 4544  4555555554 4689999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCC
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALN  174 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~  174 (203)
                      .|++|||+|.++...|+++...+-.+..-.. ..+|+.+..||.|+.-  +...+++..-+.     ...+.+-+||+.+
T Consensus        86 vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt--aa~~eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   86 VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT--AAKVEEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh--hcchHHHHHhcchhhhhhceEEeeeCcccc
Confidence            9999999999999999988666666555444 7799999999999876  344444433322     2235688899999


Q ss_pred             CCCHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQ  187 (203)
Q Consensus       175 ~~~i~~~~~~i~~  187 (203)
                      +.|+.+-.+|+..
T Consensus       164 ~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  164 LEGSTDGSDWVQS  176 (185)
T ss_pred             ccCccCcchhhhc
Confidence            9999988888765

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.1e-20  Score=125.40  Aligned_cols=158  Identities=23%  Similarity=0.385  Sum_probs=123.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ...+|+++|.-|+||||++.++.-++..... |+.+......    ..++.++++||.+|+.+.+..|+.|+.+.|++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            6799999999999999999999877764443 6655544432    2367889999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|.++.+...-....+..+..... ++..+++++||.|...  .....|+...+     +..-+.++++||.+|.|++.
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~--~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG--ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh--hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999998766665555555544444 6678899999999876  34444543332     33346799999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      .++|+.+.+-.
T Consensus       170 ~~DWL~~~l~~  180 (182)
T KOG0072|consen  170 AMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHhc
Confidence            99999987643

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.84  E-value=1.2e-19  Score=128.55  Aligned_cols=150  Identities=17%  Similarity=0.200  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHhhhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----------RYRAVTSAYYR   99 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~   99 (203)
                      .|+++|.+|+|||||++.|.+........++.+.+.....+..++   .+.+|||||..          .+......|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996555444445544444444444443   78999999932          23444444554


Q ss_pred             ---CCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHH--HcCCeEEEE
Q 048709          100 ---GALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAE--DQGLFFSEA  170 (203)
Q Consensus       100 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  170 (203)
                         ..+++++++|..+..  ....+..|+..      .+.|+++++||+|+......  ........+.  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999987652  22222333322      25789999999998543211  1122222222  344679999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++.++++++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=3.3e-19  Score=147.62  Aligned_cols=157  Identities=19%  Similarity=0.232  Sum_probs=104.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------------CEEEEEEEEeCCCchhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------------SKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~g~~~~~   91 (203)
                      ..-|+++|.+++|||||+++|.+..+........+.+.....+..+                .....+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3469999999999999999999886644322211111111111111                001238899999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC------------CHHHH
Q 048709           92 AVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV------------SAEDV  156 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~  156 (203)
                      .++..+++.+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+...+..            ..+.+
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   45554432    2222   47899999999998642110            00000


Q ss_pred             ------------HHHHH--------------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          157 ------------VEFAE--------------DQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       157 ------------~~~~~--------------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                                  .++..              ...++++++||++|.|+++++.++......
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~  217 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ  217 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence                        11111              013689999999999999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.83  E-value=4.7e-19  Score=137.13  Aligned_cols=159  Identities=19%  Similarity=0.198  Sum_probs=126.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~   96 (203)
                      .....|+++|.+|+|||||+|+|++.........+.+.+++++.+.+.+ ...+.+.||.|.         +.|.+..+.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            4568999999999999999999999888777778888999999998875 456789999993         234444433


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                       ...+|+++.|+|++++...+++......+.......+|+++|.||+|+..+..     ....+....-..+.+||++|.
T Consensus       269 -~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         269 -VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE  342 (411)
T ss_pred             -hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence             57899999999999998888887777777777667799999999999865322     222222222158899999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQEIYA  191 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~  191 (203)
                      |++.+++.|.+.+..
T Consensus       343 gl~~L~~~i~~~l~~  357 (411)
T COG2262         343 GLDLLRERIIELLSG  357 (411)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999999998875

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=142.59  Aligned_cols=152  Identities=20%  Similarity=0.097  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSAYY   98 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~   98 (203)
                      ..|+++|.||+|||||+|+|++.+..... .|.++.+.........+  ..|.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998877443 35555555555555555  448999999955322         2234467


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      ..+|++|||+|....-+-++- .....+.   ..++|+++|+||+|...    ..+...+|....--.++.+||..|.|+
T Consensus        82 ~eADvilfvVD~~~Git~~D~-~ia~~Lr---~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~Gi  153 (444)
T COG1160          82 EEADVILFVVDGREGITPADE-EIAKILR---RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRGI  153 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHH---hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence            899999999999874332221 1112222   14689999999999763    233444454444457899999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIY  190 (203)
Q Consensus       179 ~~~~~~i~~~~~  190 (203)
                      .++++++++.+.
T Consensus       154 ~dLld~v~~~l~  165 (444)
T COG1160         154 GDLLDAVLELLP  165 (444)
T ss_pred             HHHHHHHHhhcC
Confidence            999999999873

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=2.8e-19  Score=121.26  Aligned_cols=135  Identities=20%  Similarity=0.233  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc----hhhhhhhHhhhcCCcEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ----ERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i  105 (203)
                      ||+++|+.|||||||+++|.+.+.  .+..|..       +.+.+     .++||||.    ..+....-....++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~-------i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA-------IEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce-------eEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998765  2323322       22221     34899993    344444455667999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~~  184 (203)
                      +|.|++++.+.--     ..+...  -..|+|-|+||+|+... ....+..+++++..|+. +|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999998643111     111222  25789999999999832 34667788888888874 899999999999999987


Q ss_pred             HH
Q 048709          185 LL  186 (203)
Q Consensus       185 i~  186 (203)
                      |-
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            74

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2.6e-19  Score=140.79  Aligned_cols=156  Identities=22%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh--------hH
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV--------TS   95 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~   95 (203)
                      ....++++++|.||+|||||+|+|.+.+..... .+.++.+.-...+.++|  +.+.+.||+|...-...        ..
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHH
Confidence            345799999999999999999999999887655 23443444444445555  77899999995433222        23


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG  175 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  175 (203)
                      ..+..+|.+++|+|++.+..-.+. ..+.    ....+.|+++|.||.|+.......  ..   ....+.+++.+|+++|
T Consensus       292 ~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~--~~---~~~~~~~~i~iSa~t~  361 (454)
T COG0486         292 KAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELE--SE---KLANGDAIISISAKTG  361 (454)
T ss_pred             HHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccc--hh---hccCCCceEEEEecCc
Confidence            457899999999999985222221 1111    333678999999999998743211  11   2234457999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 048709          176 DNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~  192 (203)
                      .|++.+.+.|.+.+...
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99999998888877665

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=2.5e-19  Score=144.82  Aligned_cols=152  Identities=19%  Similarity=0.168  Sum_probs=101.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCcc-----------------------------CCCCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCF-----------------------------DSKSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|+.++|||||+.+|+.  +.+..                             +.....+.+..  ...+..
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~~   82 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFET   82 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEcc
Confidence            3469999999999999999999975  21110                             01122333333  333444


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWA--  150 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  150 (203)
                      ..+.+.+|||||++.|.......+..+|++++|+|+++.++...  ....+. +.... ...|+++++||+|+.+...  
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHH
Confidence            45788999999998887666667889999999999998743211  111111 12222 2357999999999964211  


Q ss_pred             --CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709          151 --VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA  181 (203)
Q Consensus       151 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  181 (203)
                        ...+++.+++...+     ++++++||++|.|+.+.
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence              12345666666654     57999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=2e-19  Score=132.22  Aligned_cols=146  Identities=25%  Similarity=0.247  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccC-------------------------------CCCCcceeeEEEEEEECCEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFD-------------------------------SKSTIGVEFQTRTVTINSKIIK   78 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   78 (203)
                      +|+++|.+|+|||||+++|+...-...                               ..+..+.+...  ..+.....+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAY--RYFSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecce--eEEecCCce
Confidence            689999999999999999975321111                               00112222222  223333457


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC----CHH
Q 048709           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV----SAE  154 (203)
Q Consensus        79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~  154 (203)
                      +.+|||||+..|.......+..+|++++|+|++++..-.. ......+...  ...++++|+||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8899999998876656667899999999999987532111 1222222221  12357889999998652111    123


Q ss_pred             HHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709          155 DVVEFAEDQG---LFFSEASALNGDNVDT  180 (203)
Q Consensus       155 ~~~~~~~~~~---~~~~~~sa~~~~~i~~  180 (203)
                      ++.+++...+   .+++++||++|.|+.+
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            4445555555   4589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2e-18  Score=122.29  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhh
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYR   91 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~   91 (203)
                      +-+.+....|+++|.+|+|||||||+|++++-..-...|+|.+.....+.+++.   +.++|.||          .+.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            334457789999999999999999999997743333366676666666666653   67999999          35566


Q ss_pred             hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH--HHHHHHH-HHcCC
Q 048709           92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA--EDVVEFA-EDQGL  165 (203)
Q Consensus        92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~-~~~~~  165 (203)
                      .+...|++.   -.++++++|+..+..-.+. ++++-+..   .++|+++++||+|.....+...  ..+.+.+ .....
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~  170 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence            667777754   3678999999886443332 33333333   5899999999999876422221  2222111 12222


Q ss_pred             e--EEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          166 F--FSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       166 ~--~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      .  ++.+|+.++.|++++...|.+.+..
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHHhhc
Confidence            2  7888999999999999888877643

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=1.5e-18  Score=144.12  Aligned_cols=161  Identities=16%  Similarity=0.183  Sum_probs=114.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      -.+|+++|+.++|||||+++|+.  +.+....            ..+.+.+.......++...+.+++|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            47899999999999999999986  3332211            123445555555555566688999999999999988


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGL  165 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~  165 (203)
                      +..+++.+|++++|+|+.+..... ...++..+..   .++|.++++||+|..+.+. ...+++.++..       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            999999999999999998753222 2233333333   4788999999999875321 11234444432       2347


Q ss_pred             eEEEEecCCCC----------CHHHHHHHHHHHHHHh
Q 048709          166 FFSEASALNGD----------NVDTAFFRLLQEIYAL  192 (203)
Q Consensus       166 ~~~~~sa~~~~----------~i~~~~~~i~~~~~~~  192 (203)
                      |++.+||++|.          ++..+++.|++.+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            89999999998          5888999888887654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=1.7e-18  Score=125.60  Aligned_cols=147  Identities=20%  Similarity=0.149  Sum_probs=96.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCc------cCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFC------FDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      .++|+++|..++|||||+++|+.....      ..+        ....+.+.......+.....++.++||||...|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            489999999999999999999753100      000        011223333333444444567899999998887766


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHcC-----
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQG-----  164 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----  164 (203)
                      ....+..+|++++|+|+.....-. ....+..+..   .++| +++++||+|+....+.   ..+++.+++...+     
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            667788999999999998742211 2233333333   3566 7799999998642211   1234555555443     


Q ss_pred             CeEEEEecCCCCCH
Q 048709          165 LFFSEASALNGDNV  178 (203)
Q Consensus       165 ~~~~~~sa~~~~~i  178 (203)
                      ++++++||++|.|+
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            68999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=2e-18  Score=143.39  Aligned_cols=156  Identities=19%  Similarity=0.249  Sum_probs=102.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC------CEEE----------EEEEEeCCCchhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN------SKII----------KAQIWDTAGQERY   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~l~D~~g~~~~   90 (203)
                      ++..|+++|++++|||||+++|.+...........+.+......+.+      +...          .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            44679999999999999999998765433222111111101111110      1111          2689999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC------------HH-
Q 048709           91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS------------AE-  154 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~-  154 (203)
                      ..++...+..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+...+...            .. 
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            9888888899999999999997   556554432    222   478999999999985321100            00 


Q ss_pred             ----------HHHHHHHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          155 ----------DVVEFAEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       155 ----------~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                                ++..++...               .++++++||++|.|++++++.+...+
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                      111122211               35799999999999999998886544

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.81  E-value=5.7e-19  Score=141.63  Aligned_cols=162  Identities=18%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeE--E----------------EEEEECC------EEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQ--T----------------RTVTINS------KIIKA   79 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~--~----------------~~~~~~~------~~~~~   79 (203)
                      ..++|+++|.+++|||||+++|.+...+.   +.....+....  .                ....+++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997642211   10011111100  0                0000111      13578


Q ss_pred             EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHH
Q 048709           80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVV  157 (203)
Q Consensus        80 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~  157 (203)
                      .+|||||++.|...+......+|++++|+|++++....+..+.+..+...  ...|+++++||+|+.+...  ...+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            99999999999887777788899999999999642111222222222222  1246899999999975321  1134445


Q ss_pred             HHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          158 EFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       158 ~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      +++...   +++++++||++|.|+++++++|...+.
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            554433   578999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=3.1e-19  Score=144.25  Aligned_cols=154  Identities=22%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-----------------------------CCCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-----------------------------KSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..++|+++|++++|||||+++|+...-....                             ....+.+.......++...+
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            4599999999999999999999843211000                             01122333333334444557


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC----CC
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-DHVARGVEELRAHADSSIRIILIGNKSDLVDMWA----VS  152 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~  152 (203)
                      .+.+|||||++.|.......+..+|++++|+|+++.... ......+..+...  ...|+++++||+|+.+...    ..
T Consensus        85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHH
Confidence            899999999888766555557899999999999872111 1111222222221  1246899999999975211    12


Q ss_pred             HHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 048709          153 AEDVVEFAEDQG-----LFFSEASALNGDNVDTAF  182 (203)
Q Consensus       153 ~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  182 (203)
                      .+++.+++...+     ++++++||++|.|+.+..
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            245555655554     579999999999998743

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=8.7e-19  Score=140.55  Aligned_cols=161  Identities=20%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEE--EE--------------E--EC--C----EEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTR--TV--------------T--IN--S----KII   77 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~--~~--------------~--~~--~----~~~   77 (203)
                      ....++|+++|+.++|||||+.+|.+.-.+   .+..+..+......  .+              .  .+  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            345699999999999999999999663211   11111111111100  00              0  01  0    135


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--  151 (203)
                      .+.+|||||+..|..........+|++++|+|++++    ++.+.+    ..+...  ...|+++++||+|+.+....  
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l----~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~  159 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL----MALDII--GIKNIVIVQNKIDLVSKERALE  159 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH----HHHHHc--CCCcEEEEEEeeccccchhHHH
Confidence            789999999888766554555677999999999964    233222    222221  12368999999999763221  


Q ss_pred             CHHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          152 SAEDVVEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ..+++..++...   +++++++||++|.|++++++.|.+.+..
T Consensus       160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            123445554432   5789999999999999999999887643

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.81  E-value=8.1e-19  Score=145.81  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCccCC------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK--NEFCFDS------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   94 (203)
                      .+|+++|+.++|||||+++|+.  +.+....            ....+.+.......+.....++++|||||+..|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            4799999999999999999985  2221110            0112233333333344445788999999999999888


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCCe
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGLF  166 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  166 (203)
                      ..+++.+|++++|+|+.+.. ..+...++..+..   .++|+++++||+|+.+.+. ...+++..++.       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            89999999999999998742 2334455555544   4689999999999865321 11234444442       23578


Q ss_pred             EEEEecCCCC----------CHHHHHHHHHHHHHHh
Q 048709          167 FSEASALNGD----------NVDTAFFRLLQEIYAL  192 (203)
Q Consensus       167 ~~~~sa~~~~----------~i~~~~~~i~~~~~~~  192 (203)
                      ++.+||++|.          |+..+|+.|++.+...
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            9999999995          7999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=1.9e-21  Score=134.44  Aligned_cols=172  Identities=31%  Similarity=0.586  Sum_probs=146.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-EEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-IIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      ..+.+.+++.|+|..|+|||+++.+.+...++..+..+.+.++.......+.. .++++|||..|++++..+..-|++.+
T Consensus        20 ~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea   99 (229)
T KOG4423|consen   20 KKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA   99 (229)
T ss_pred             chhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC
Confidence            34688999999999999999999999999998889899999988887776544 45788999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGL-FFSEASALNG  175 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~sa~~~  175 (203)
                      ++.++|||+++.-+|+....|.+.+.....    ..+|+++..||+|+..... ......-++.+++++ ..+++|+|.+
T Consensus       100 ~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Ken  179 (229)
T KOG4423|consen  100 HGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKEN  179 (229)
T ss_pred             cceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccc
Confidence            999999999999999999999988766543    4578899999999865321 123566778888886 5999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhc
Q 048709          176 DNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~~~  194 (203)
                      .+++|+.+.+++++.-...
T Consensus       180 kni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  180 KNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             cChhHHHHHHHHHHHhhcc
Confidence            9999999999999876543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=3.7e-18  Score=142.54  Aligned_cols=154  Identities=18%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      -|+++|..++|||||+++|++..   ...+.....+.+.....+...+ ...+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999999743   2233333444433333332222 2347899999999987777777899999999


Q ss_pred             EEeCCC---HHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC--CHHHHHHHHHHcC---CeEEEEecCCCCC
Q 048709          107 VYDITK---RQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV--SAEDVVEFAEDQG---LFFSEASALNGDN  177 (203)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~sa~~~~~  177 (203)
                      |+|+++   +++.+.+    ..+..   .++| +++|+||+|+.+....  ..+++.+++...+   .+++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            999987   3443333    22222   2345 5799999999753221  1344555555444   6899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIYA  191 (203)
Q Consensus       178 i~~~~~~i~~~~~~  191 (203)
                      ++++++.|.+....
T Consensus       154 I~~L~~~L~~~~~~  167 (614)
T PRK10512        154 IDALREHLLQLPER  167 (614)
T ss_pred             CHHHHHHHHHhhcc
Confidence            99999999875543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=3.1e-18  Score=127.88  Aligned_cols=114  Identities=16%  Similarity=0.149  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCc--------cCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFC--------FDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      +|+++|.+|+|||||+++|+...-.        ...        ....+.........+.....++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999753110        000        001112222233333334568899999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ...+++.+|++++|+|+.+.... ....++..+..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            88899999999999999885432 23344444443   4789999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-18  Score=127.84  Aligned_cols=162  Identities=22%  Similarity=0.213  Sum_probs=109.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh------hh------h
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------YR------A   92 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------~~------~   92 (203)
                      ...-++|+|+|.||+|||||.|.+.+.++.+......+++....-+...+. .++.|+||||.-.      +.      .
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-TQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-TQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-eEEEEecCCcccccchhhhHHHHHHhhh
Confidence            456799999999999999999999999998887777666666555544444 4899999999321      11      1


Q ss_pred             hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-------------CCH--HHHH
Q 048709           93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-------------VSA--EDVV  157 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~--~~~~  157 (203)
                      .....+..+|.+++|+|+++.-..-. .+.+..+...  ..+|-+++.||.|...++.             .+.  -++.
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            12334678999999999996222111 2333344444  3678899999999875421             111  1111


Q ss_pred             H-HHHHc---------CC----eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          158 E-FAEDQ---------GL----FFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       158 ~-~~~~~---------~~----~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      + |....         ++    .+|.+||++|.||+++-+++...+.
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            1 11111         12    3899999999999999999887653

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=3.6e-18  Score=127.84  Aligned_cols=155  Identities=16%  Similarity=0.172  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------hHhhhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-------TSAYYRGA  101 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~  101 (203)
                      -.|.+||.|++|||||+++|...+-.....+.++..+..-.+.+++.. ++.+-|.||...-.++       .-.+++.+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            357899999999999999999877666666777777777776665544 4899999995443322       23467889


Q ss_pred             cEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe-EEEEecCCC
Q 048709          102 LGAVVVYDITKR---QSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF-FSEASALNG  175 (203)
Q Consensus       102 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~  175 (203)
                      +.++||+|++.+   .-|++++.+..++..+..  .+.|.++|+||+|+++.   ..+.+.++.....-+ ++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999998   778888777777766554  67899999999999642   223346666666655 999999999


Q ss_pred             CCHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQ  187 (203)
Q Consensus       176 ~~i~~~~~~i~~  187 (203)
                      +++.++++.|.+
T Consensus       353 egl~~ll~~lr~  364 (366)
T KOG1489|consen  353 EGLEELLNGLRE  364 (366)
T ss_pred             cchHHHHHHHhh
Confidence            999999887754

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=6.3e-18  Score=138.33  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=117.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhh--c
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYY--R   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~--~   99 (203)
                      ..+|+++|+||+|||||+|+|++......+.|..+++...-.....+..  +.+.|.||-.+..      ...+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3569999999999999999999999888888888887777777766644  7899999943322      2333444  4


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      ..|+++-|+|+++-+.      -+....+...-+.|+++++|++|....+-+ .=+..++.+..|+|++++||++|.|++
T Consensus        81 ~~D~ivnVvDAtnLeR------nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          81 KPDLIVNVVDATNLER------NLYLTLQLLELGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCEEEEEcccchHHH------HHHHHHHHHHcCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            5699999999998543      222222233358899999999998765333 235667788899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++.+.+++....
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999988865443

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=126.02  Aligned_cols=171  Identities=19%  Similarity=0.161  Sum_probs=119.9

Q ss_pred             cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc-----hh
Q 048709           15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ-----ER   89 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----~~   89 (203)
                      +.....+|.-.+....|+|.|.||+|||||++.+++.+......|.++.....-.+..  ...+++++||||.     +.
T Consensus       155 r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~E  232 (346)
T COG1084         155 RDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEE  232 (346)
T ss_pred             HHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHH
Confidence            3445566766778899999999999999999999998877666676655555544444  3467899999992     11


Q ss_pred             hh----hhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc
Q 048709           90 YR----AVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ  163 (203)
Q Consensus        90 ~~----~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  163 (203)
                      .+    .-..+.-+-.++++|+||.+...  +.+.-..++..+.....  .|+++|+||+|..+.  -..+++..+....
T Consensus       233 rN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~--e~~~~~~~~~~~~  308 (346)
T COG1084         233 RNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE--EKLEEIEASVLEE  308 (346)
T ss_pred             hcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch--hHHHHHHHHHHhh
Confidence            11    11222334567899999999743  55555667777777663  899999999998863  2344555555554


Q ss_pred             CCe-EEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          164 GLF-FSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       164 ~~~-~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +.. ...+++..+.+++..-..+.....+
T Consensus       309 ~~~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         309 GGEEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             ccccccceeeeehhhHHHHHHHHHHHhhc
Confidence            443 6778888898988877777766433

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.78  E-value=3e-18  Score=126.87  Aligned_cols=148  Identities=21%  Similarity=0.169  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC--Ccc-------------------------CC--CCCcceeeEEEEEEECCEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE--FCF-------------------------DS--KSTIGVEFQTRTVTINSKIIKAQ   80 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~--~~~-------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
                      +|+++|++++|||||+.+|+...  ...                         ..  ....+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999985321  000                         00  00111222222333333456789


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCC
Q 048709           81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS------FDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVS  152 (203)
Q Consensus        81 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~  152 (203)
                      +|||||+..|.......+..+|++++|+|+++...      .......+......  ...|+++++||+|+....  ...
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence            99999988777666667788999999999987421      11122222222221  236899999999997320  111


Q ss_pred             H----HHHHHHHHHc-----CCeEEEEecCCCCCHH
Q 048709          153 A----EDVVEFAEDQ-----GLFFSEASALNGDNVD  179 (203)
Q Consensus       153 ~----~~~~~~~~~~-----~~~~~~~sa~~~~~i~  179 (203)
                      .    +++..++...     .++++++||++|.|+.
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1    2233334443     3679999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04167 Snu114p Snu114p subfamily

Probab=99.78  E-value=3.5e-18  Score=126.06  Aligned_cols=113  Identities=20%  Similarity=0.299  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCC-----------------CCCcceeeEE--EEEEE---CCEEEEEEEEeCCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDS-----------------KSTIGVEFQT--RTVTI---NSKIIKAQIWDTAGQ   87 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~l~D~~g~   87 (203)
                      +|+++|+.|+|||||+++|+........                 ....+.....  ..+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999874432210                 0011112111  11111   355688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      ..|......++..+|++++|+|+.+..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9888778888999999999999987655432 233333322   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=1.5e-17  Score=121.30  Aligned_cols=162  Identities=14%  Similarity=0.131  Sum_probs=97.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcce-ee--EEEEEEECCEEEEEEEEeCCCchhhhhhhHh-----hhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EF--QTRTVTINSKIIKAQIWDTAGQERYRAVTSA-----YYR   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~~   99 (203)
                      +++|+++|.+|+|||||+|+|++.........+.+. ..  ....+... ....+.+|||||..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986543322122221 10  11111111 1236899999996433222222     256


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----------CCHHHHHHHHH----HcC
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----------VSAEDVVEFAE----DQG  164 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~  164 (203)
                      .+|++++|.+.. ....+  ..++..+...   +.|+++|+||+|+.....           ...+++.+.+.    ..+
T Consensus        80 ~~d~~l~v~~~~-~~~~d--~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISSTR-FSSND--VKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCCC-CCHHH--HHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            789888885432 22111  2344444443   578999999999843211           11112222222    222


Q ss_pred             ---CeEEEEecC--CCCCHHHHHHHHHHHHHHhhccc
Q 048709          165 ---LFFSEASAL--NGDNVDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       165 ---~~~~~~sa~--~~~~i~~~~~~i~~~~~~~~~~~  196 (203)
                         -++|.+|+.  .+.++..+.+.++..+.+.++..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~  190 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV  190 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence               368999998  67999999999999998866543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=2.9e-17  Score=131.33  Aligned_cols=161  Identities=18%  Similarity=0.116  Sum_probs=104.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc--------------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF--------------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ...++|+++|+.++|||||+++|++.....              ......+.+.......+.....++.++||||+..|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            346999999999999999999998631100              000122333334444454445678999999988876


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCC---HHHHHHHHHHcC---
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVS---AEDVVEFAEDQG---  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~---  164 (203)
                      .....-+..+|++++|+|+.....-. ....+..+..   .++| +++++||+|+.+..+..   .+++.+++...+   
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  165 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence            65555667889999999998632211 1222233332   3667 67899999987432211   235555655554   


Q ss_pred             --CeEEEEecCCCC--------CHHHHHHHHHHHHH
Q 048709          165 --LFFSEASALNGD--------NVDTAFFRLLQEIY  190 (203)
Q Consensus       165 --~~~~~~sa~~~~--------~i~~~~~~i~~~~~  190 (203)
                        ++++++||++|.        ++.++++.+.+.+.
T Consensus       166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence              589999999983        56777777776654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=4.6e-17  Score=130.27  Aligned_cols=161  Identities=19%  Similarity=0.114  Sum_probs=103.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC-------CCcc--C-----CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN-------EFCF--D-----SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~-------~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ...++|+++|.+++|||||+++|++.       .+..  .     .....+.+.......+.....++.|+||||+..|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            35699999999999999999999862       1000  0     00122233333334444445578999999998876


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWA---VSAEDVVEFAEDQG---  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~---~~~~~~~~~~~~~~---  164 (203)
                      .....-+..+|++++|+|+.+.... +....+..+..   .++|.+ +++||+|+.+..+   ...+++..++..++   
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~  165 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence            6666667889999999999874221 12233333332   357755 5799999974211   11235556665543   


Q ss_pred             --CeEEEEecCCCC----------CHHHHHHHHHHHHH
Q 048709          165 --LFFSEASALNGD----------NVDTAFFRLLQEIY  190 (203)
Q Consensus       165 --~~~~~~sa~~~~----------~i~~~~~~i~~~~~  190 (203)
                        ++++++||++|.          ++.++++.|.+.+.
T Consensus       166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence              679999999984          56777777766543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.75  E-value=2.8e-17  Score=121.21  Aligned_cols=113  Identities=15%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--ccC--------------CCCCcceeeEEEEEEEC--------CEEEEEEEEeCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF--CFD--------------SKSTIGVEFQTRTVTIN--------SKIIKAQIWDTA   85 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~l~D~~   85 (203)
                      +|+++|..++|||||+.+|+...-  ...              .....+.......+.+.        +..+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            799999999999999999975321  100              00111111122222232        347889999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      |+..|......+++.+|++++|+|+.+....... ..+.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence            9999998889999999999999999986544332 22232222   467999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=1.6e-17  Score=122.55  Aligned_cols=160  Identities=18%  Similarity=0.281  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcCCcE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-----VTSAYYRGALG  103 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~  103 (203)
                      ||+++|+.||||||+.+.++.+-.+.... -..+.+.....+... ..+.+.+||+||+..+-.     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999998865433221 122233333333322 235789999999865433     35678999999


Q ss_pred             EEEEEeCCCHHHHHH---HHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--C----CCHHHHHHHHHHcC---CeEEEEe
Q 048709          104 AVVVYDITKRQSFDH---VARGVEELRAHADSSIRIILIGNKSDLVDMW--A----VSAEDVVEFAEDQG---LFFSEAS  171 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~----~~~~~~~~~~~~~~---~~~~~~s  171 (203)
                      +|||+|+.+.+-.+.   +...+..+.+.. +++.+-+++.|+|+....  .    ...+.+.+.+...+   +.++.||
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999995433333   344444444433 788999999999986421  1    11233444455555   7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 048709          172 ALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ..+ ..+-+.|..+++.+...
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTT
T ss_pred             CcC-cHHHHHHHHHHHHHccc
Confidence            988 58888999999887653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01850 CDC_Septin CDC/Septin

Probab=99.75  E-value=4.4e-17  Score=124.23  Aligned_cols=142  Identities=15%  Similarity=0.226  Sum_probs=92.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY------   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------   90 (203)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+++.+|||||....      
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999999876543          2334444555556666788889999999993221      


Q ss_pred             -hhh-------------------hHhhhc--CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           91 -RAV-------------------TSAYYR--GALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        91 -~~~-------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                       ..+                   ....+.  .+|+++++++.+... +... ...+..+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence             100                   001222  467788888876411 1111 12222222    2689999999999865


Q ss_pred             c--cCCCHHHHHHHHHHcCCeEEEEecC
Q 048709          148 M--WAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus       148 ~--~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      .  .....+.+.+.+..++++++.+...
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            2  2233556677778888888876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.75  E-value=5.3e-17  Score=130.00  Aligned_cols=147  Identities=18%  Similarity=0.139  Sum_probs=95.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC------cc---C-----CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF------CF---D-----SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~------~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      .+.++|+++|..++|||||+++|++...      ..   .     .....+.+.......++....++.+|||||++.|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            3569999999999999999999974210      00   0     00112233334444555555678999999998887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHHcC---
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWAV---SAEDVVEFAEDQG---  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~---  164 (203)
                      .....-...+|++++|+|+.+..... ..+.+..+..   .++|.+ +++||+|+.+..+.   ..+++.+++...+   
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~  165 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            65555567889999999998732211 1222233332   356655 68999998753221   1235666666665   


Q ss_pred             --CeEEEEecCCCC
Q 048709          165 --LFFSEASALNGD  176 (203)
Q Consensus       165 --~~~~~~sa~~~~  176 (203)
                        ++++++||++|.
T Consensus       166 ~~~~ii~vSa~~g~  179 (394)
T TIGR00485       166 DDTPIIRGSALKAL  179 (394)
T ss_pred             cCccEEECcccccc
Confidence              689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04169 RF3 RF3 subfamily

Probab=99.75  E-value=1.1e-16  Score=121.55  Aligned_cols=115  Identities=20%  Similarity=0.186  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC--CccC--------CCC----------CcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE--FCFD--------SKS----------TIGVEFQTRTVTINSKIIKAQIWDTAGQE   88 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~--~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   88 (203)
                      .+|+++|++|+|||||+++|+...  ....        ...          ..+.........++....++++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            579999999999999999997421  1100        000          01122333334445556789999999998


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .|.......++.+|++++|+|+++.... ....++.....   .++|+++++||+|+.+
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            8887677788999999999999875321 22233333222   4789999999999865

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.75  E-value=1.2e-17  Score=133.84  Aligned_cols=172  Identities=21%  Similarity=0.235  Sum_probs=124.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+++|..|+||||||-+|...++.+.-++-...-.-..  .+.-..+...+.|++..+.-+.-...-++.+|+++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            3569999999999999999999999988766544332211111  12223355789999865554444566689999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHH-HHHHHHHc-CC-eEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAED-VVEFAEDQ-GL-FFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~-~~~~~sa~~~~~i~  179 (203)
                      +||+++++++++.+ ..|+..+.+..+  .++|+|+|+||+|.........+. ...+...+ .+ ..++|||++..++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999998 578888887765  789999999999987654443333 22222222 22 26889999999999


Q ss_pred             HHHHHHHHHHHHhhcccccc
Q 048709          180 TAFFRLLQEIYALSKKELEC  199 (203)
Q Consensus       180 ~~~~~i~~~~~~~~~~~~~~  199 (203)
                      ++|-...+.+...-...+..
T Consensus       165 e~fYyaqKaVihPt~PLyda  184 (625)
T KOG1707|consen  165 ELFYYAQKAVIHPTSPLYDA  184 (625)
T ss_pred             hhhhhhhheeeccCcccccc
Confidence            99988888877765544443

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=8.5e-17  Score=129.28  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=96.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc------C--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCF------D--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      ....++|+++|.+++|||||+++|++..-..      .        .....+.+.......+.....++.|+||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            3456999999999999999999998641100      0        0011223333333334444457889999998887


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHcC--
Q 048709           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQG--  164 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  164 (203)
                      .......+..+|++++|+|+.....- +....+..+..   .++| +++++||+|+.+..+.   ..+++..++...+  
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            66666678899999999999864221 12223333332   3577 7789999999753221   1235555655543  


Q ss_pred             ---CeEEEEecCCCCC
Q 048709          165 ---LFFSEASALNGDN  177 (203)
Q Consensus       165 ---~~~~~~sa~~~~~  177 (203)
                         ++++++||.+|.+
T Consensus       165 ~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        165 GDDIPIVSGSALLALE  180 (409)
T ss_pred             CCcceEEEcchhhccc
Confidence               6899999998864

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.75  E-value=1.1e-16  Score=118.54  Aligned_cols=153  Identities=20%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCC----------------C-------cceeeEEE-------------EEEEC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKS----------------T-------IGVEFQTR-------------TVTIN   73 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~----------------~-------~~~~~~~~-------------~~~~~   73 (203)
                      ||+++|..++|||||+++|..+.+......                +       .+.+....             ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987554321110                0       00000000             00111


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-
Q 048709           74 SKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-  150 (203)
Q Consensus        74 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-  150 (203)
                      .....+.++||||...|.......+.  .+|++++|+|+.....-. ...++..+..   .++|+++++||+|+.+... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            12356889999999888654443343  689999999998643321 2233333333   4688999999999865311 


Q ss_pred             -CCHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHH
Q 048709          151 -VSAEDVVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       151 -~~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                       ...+++.+++..                          ..+|++.+||.+|.|+++++..|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence             112223333221                          124899999999999998887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.6e-17  Score=122.49  Aligned_cols=175  Identities=15%  Similarity=0.152  Sum_probs=118.0

Q ss_pred             cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE-EECCEEEEEEEEeCCCchh----
Q 048709           15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV-TINSKIIKAQIWDTAGQER----   89 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~----   89 (203)
                      .++.++.+-....+++|+++|.+|+||||+||+|+.++..+...-..+.+...... .+++  -.+.|||+||...    
T Consensus        26 l~~~~~~~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~  103 (296)
T COG3596          26 LEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDK  103 (296)
T ss_pred             HHHhhhhhhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhh
Confidence            34444555456678999999999999999999999877655543333333333322 3344  3478999999433    


Q ss_pred             ---hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHH
Q 048709           90 ---YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEF  159 (203)
Q Consensus        90 ---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~  159 (203)
                         ++.....++...|.++++.++.++.---.. ++++.+.... .+.++++++|++|...+       ...+...++++
T Consensus       104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qf  181 (296)
T COG3596         104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQF  181 (296)
T ss_pred             hHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHH
Confidence               677788899999999999999986422222 3333333322 34789999999998643       11222233333


Q ss_pred             HHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          160 AED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       160 ~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      ...          .-.|++..+...+.|++.+...++..+....
T Consensus       182 i~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         182 IEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             HHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence            321          1247888899999999999999999887543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.73  E-value=9.3e-17  Score=121.64  Aligned_cols=163  Identities=17%  Similarity=0.042  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d  102 (203)
                      -|.+||.|++|||||++++...+-.....+.++..+..-.+.++. .-.|++-|.||...-       ....-.++..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            467999999999999999998777666667777777777776633 335899999994321       222334678889


Q ss_pred             EEEEEEeCCCHHH---HHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEE-EecCCCC
Q 048709          103 GAVVVYDITKRQS---FDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSE-ASALNGD  176 (203)
Q Consensus       103 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~sa~~~~  176 (203)
                      ++++|+|++..+.   .++......++..+..  .+.|.++|+||+|+....+........+....++.... +|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            9999999986432   3444444455555433  67899999999997653222222233333344443222 9999999


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 048709          177 NVDTAFFRLLQEIYALS  193 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~~  193 (203)
                      |++++...+.+.+....
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999888887764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.72  E-value=5e-16  Score=113.17  Aligned_cols=159  Identities=15%  Similarity=0.158  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhh---H
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVT---S   95 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~---~   95 (203)
                      ++|+++|.+|+|||||+|+|++.+......  +..+..........++  .++.++||||.....        .+.   .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999987543332  2222333333334444  468999999954321        111   1


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcccC------CCHHHHHHHHHHcCCeE
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDMWA------VSAEDVVEFAEDQGLFF  167 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~  167 (203)
                      ....+.|++++|+++.+. +-.+ ...++.+....+.  -.++++++|+.|......      .....++......+-.+
T Consensus        79 ~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            124678999999999872 2222 2333444443331  246899999999765321      11245566666666666


Q ss_pred             EEEec-----CCCCCHHHHHHHHHHHHHH
Q 048709          168 SEASA-----LNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       168 ~~~sa-----~~~~~i~~~~~~i~~~~~~  191 (203)
                      +.++.     ..+.+++++++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            66654     4567788888888777765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=6.5e-17  Score=110.09  Aligned_cols=153  Identities=18%  Similarity=0.251  Sum_probs=117.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .=|++++|..|+|||||++.|.+.+..... ||  ..++...+.+.+  .+++-+|.+|+..-+..+..|+..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PT--lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PT--LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccC-CC--cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            358999999999999999999887764433 44  334444555655  6678999999998889999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH---c-----------C---CeEEE
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED---Q-----------G---LFFSE  169 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~-----------~---~~~~~  169 (203)
                      +|+-+.+.+.+.+..++.+..... ..+|+++.+||+|.+.  ....++.+.....   .           +   +.++.
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            999999999999888888776665 7899999999999987  3455554433211   1           1   24788


Q ss_pred             EecCCCCCHHHHHHHHHH
Q 048709          170 ASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~  187 (203)
                      ||...+.+.-+.|.|+..
T Consensus       173 csi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEccCccceeeeehhh
Confidence            888888887777777654

>PRK09866 hypothetical protein; Provisional

Probab=99.71  E-value=1.8e-16  Score=129.68  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             EEEEEeCCCchh-----hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC
Q 048709           78 KAQIWDTAGQER-----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS  152 (203)
Q Consensus        78 ~~~l~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  152 (203)
                      ++.|+||||...     ........+..+|+++||+|++...+..+. ..+..+.+. +...|+++|+||+|..+.....
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-GQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence            578999999643     222344579999999999999874332221 223333332 2236999999999986533333


Q ss_pred             HHHHHHHHH----HcC---CeEEEEecCCCCCHHHHHHHHHH
Q 048709          153 AEDVVEFAE----DQG---LFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       153 ~~~~~~~~~----~~~---~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      .+.+..+..    ...   ..++++||+.|.|++.+++.|.+
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            556666543    222   35999999999999999988876

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.71  E-value=5.7e-16  Score=116.60  Aligned_cols=156  Identities=20%  Similarity=0.159  Sum_probs=112.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYR   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   99 (203)
                      -.-+++++|.|++|||||++.|++-+......+.++.+...-.+.+++  .++++.|+||.-.-.       ...-...+
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            357899999999999999999999888777667777777777777766  667999999842211       22345679


Q ss_pred             CCcEEEEEEeCCCHHH-HHHHHHHHHHHHh--------------------------------------------------
Q 048709          100 GALGAVVVYDITKRQS-FDHVARGVEELRA--------------------------------------------------  128 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~--------------------------------------------------  128 (203)
                      +||++++|+|+..... .+.+.+.++....                                                  
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999986443 3333322221100                                                  


Q ss_pred             ---------------hcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          129 ---------------HADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       129 ---------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                                     .+..-+|.+.|.||.|+..     .+++....+..  ..+.+||+.+.|++++.+.|-+.+--
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                           0113489999999999875     34444444444  78899999999999999888877643

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.71  E-value=8.2e-16  Score=118.97  Aligned_cols=81  Identities=15%  Similarity=0.217  Sum_probs=57.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE---------------------CC-EEEEEEEEeCCCc-
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------------NS-KIIKAQIWDTAGQ-   87 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~l~D~~g~-   87 (203)
                      |+++|.|++|||||+|+|++........+..+.++......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999998765444344443443322221                     22 3467999999996 


Q ss_pred             ---hhhhhhhHh---hhcCCcEEEEEEeCC
Q 048709           88 ---ERYRAVTSA---YYRGALGAVVVYDIT  111 (203)
Q Consensus        88 ---~~~~~~~~~---~~~~~d~~i~v~d~~  111 (203)
                         +.+..+-..   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334443333   589999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=1.3e-15  Score=101.68  Aligned_cols=105  Identities=22%  Similarity=0.232  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----------hhhhhHhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----------YRAVTSAYY   98 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~   98 (203)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+.+++..  +.++||||...          +.... ..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~-~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFL-EQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHH-HHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHH-HHH
Confidence            699999999999999999998643 23333344444444455566655  46999999432          11222 334


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK  142 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  142 (203)
                      ..+|++++|+|++++.. +.....+..+.    .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            89999999999888422 22223333332    57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=7.2e-16  Score=126.80  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=79.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC--------CC----------CCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD--------SK----------STIGVEFQTRTVTINSKIIKAQIWDTA   85 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~   85 (203)
                      ....+|+++|++++|||||+++|+.  +.....        ..          ..-+.........++...+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567999999999999999999963  211100        00          001222233333344445778999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      |+..|......++..+|++++|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            9998887777788999999999999874321 22333333322   5789999999999853

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=6.9e-16  Score=117.68  Aligned_cols=112  Identities=21%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCC------------------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDS------------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      +|+++|.+|+|||||+++|+...-....                  ....+.......+..+  ..++++|||||...+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            5899999999999999999753211000                  0111122222233333  3578999999998887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .....++..+|++++|+|+++....... ..+..+..   .++|+++++||+|...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~  130 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCC
Confidence            7778889999999999999885443322 22233322   4789999999999876

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.4e-16  Score=125.58  Aligned_cols=168  Identities=21%  Similarity=0.238  Sum_probs=111.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhh--------hhH
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRA--------VTS   95 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~--------~~~   95 (203)
                      ....++|+++|+||+|||||+|+|...+..... |..|++....+..++-+++.+.|.||+|... -..        ...
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence            345699999999999999999999999988666 5555666665555555568889999999544 111        123


Q ss_pred             hhhcCCcEEEEEEeCC--CHHHHHHHHHHHHHHHhhcC------CCCcEEEEEeCCCCCcc-cCCCHHHHHHHHHHcC--
Q 048709           96 AYYRGALGAVVVYDIT--KRQSFDHVARGVEELRAHAD------SSIRIILIGNKSDLVDM-WAVSAEDVVEFAEDQG--  164 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~--  164 (203)
                      ..+..+|++++|+|+.  +-++...+.+.+.....-..      ...|++++.||.|+... .+... ....+....+  
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~  422 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRS  422 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCc
Confidence            4578899999999994  33333333333333322222      23789999999999764 11111 1111222121  


Q ss_pred             -C-eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          165 -L-FFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       165 -~-~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                       . .+.++|+++++|++++...+.+.......
T Consensus       423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             2 35569999999999999999888766543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.3e-15  Score=123.91  Aligned_cols=148  Identities=17%  Similarity=0.112  Sum_probs=96.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC------CccC--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNE------FCFD--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ...++|+++|.+++|||||+++|++..      ....        .....+.+.......++....++.++|+||+..|-
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            456999999999999999999998521      1000        01122233333333343344578999999998887


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHc----
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQ----  163 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~----  163 (203)
                      .....-+..+|++++|+|+.+...-. ..+.+..+..   .++| +++++||+|+.+..+.   ..+++..++...    
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            76666778999999999998743222 2233333333   3677 7889999998753211   123455555553    


Q ss_pred             -CCeEEEEecCCCCC
Q 048709          164 -GLFFSEASALNGDN  177 (203)
Q Consensus       164 -~~~~~~~sa~~~~~  177 (203)
                       .++++.+|+.+|.+
T Consensus       235 ~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        235 DDIPIISGSALLALE  249 (478)
T ss_pred             CcceEEEEEcccccc
Confidence             46899999988753

>PRK00049 elongation factor Tu; Reviewed

Probab=99.69  E-value=1.7e-15  Score=121.20  Aligned_cols=160  Identities=18%  Similarity=0.107  Sum_probs=102.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc------cC--------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC------FD--------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ...++|+++|..++|||||+++|++....      ..        .....+.+.......+.....++.++||||+..|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            35699999999999999999999873110      00        00122233333344444445578899999998876


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHHc----
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWAV---SAEDVVEFAEDQ----  163 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~----  163 (203)
                      ......+..+|++++|+|+.....- +....+..+..   .++|.+ +++||+|+.+....   ..+++.+++...    
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            6666668899999999999874321 22233333333   357875 68999999742111   122444555443    


Q ss_pred             -CCeEEEEecCCCC----------CHHHHHHHHHHHH
Q 048709          164 -GLFFSEASALNGD----------NVDTAFFRLLQEI  189 (203)
Q Consensus       164 -~~~~~~~sa~~~~----------~i~~~~~~i~~~~  189 (203)
                       .++++.+||++|.          ++..+++.|.+.+
T Consensus       166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             cCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence             3689999999875          4556666666543

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.69  E-value=5.2e-16  Score=126.49  Aligned_cols=153  Identities=22%  Similarity=0.218  Sum_probs=93.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-------------CCC------------------CcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-------------SKS------------------TIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|.+++|||||+.+|+...-...             ...                  .-+.+.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4569999999999999999999975321100             000                  001112222223333


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                      ...++.|+||||+..|......-+..+|++++|+|+.....-..... +..+....  ..|+++++||+|+.+......+
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence            45678999999988886555555799999999999986422111111 11112111  2468999999998743221122


Q ss_pred             HH----HHHHHHc----CCeEEEEecCCCCCHHHH
Q 048709          155 DV----VEFAEDQ----GLFFSEASALNGDNVDTA  181 (203)
Q Consensus       155 ~~----~~~~~~~----~~~~~~~sa~~~~~i~~~  181 (203)
                      ++    ..++...    .++++++||++|.|+.+.
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            22    2333332    378999999999998764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=3.1e-16  Score=119.12  Aligned_cols=112  Identities=19%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCc----------------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTK--NEFC----------------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      +|+++|++|+|||||+++|+.  +...                .+..+..+.......+..  ...++.+|||||...+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            589999999999999999963  1110                011112222222233333  34678999999998888


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ......++.+|++++|+|+.+...-.. ...+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            878889999999999999987432211 233333332   4689999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.69  E-value=5.5e-16  Score=124.42  Aligned_cols=149  Identities=26%  Similarity=0.262  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC--Ccc-------------CC-----------C-----CCcceeeEEEEEEECCEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE--FCF-------------DS-----------K-----STIGVEFQTRTVTINSKII   77 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~--~~~-------------~~-----------~-----~~~~~~~~~~~~~~~~~~~   77 (203)
                      ++|+++|+.++|||||+.+|+...  ...             ..           +     ..-+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999996421  100             00           0     0011112222223333345


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC----H
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS----A  153 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~  153 (203)
                      ++.|+||||++.|......-+..+|++++|+|+.....-... +.+..+....  ..++++++||+|+.+.....    .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~  157 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK  157 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence            789999999988876566678899999999999864321111 1112222211  23588999999986522111    1


Q ss_pred             HHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709          154 EDVVEFAEDQG---LFFSEASALNGDNVDT  180 (203)
Q Consensus       154 ~~~~~~~~~~~---~~~~~~sa~~~~~i~~  180 (203)
                      +++..+....+   ++++++||++|.|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            23333344443   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=4.5e-15  Score=118.66  Aligned_cols=156  Identities=21%  Similarity=0.270  Sum_probs=115.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ++.=|+++|+..-|||||+..+-+........-..+.+..-+.+..+. ..-.+.|+||||++.|..+...=..-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            446689999999999999999988877655444444444445555431 2346889999999999999988888999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709          106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL  173 (203)
Q Consensus       106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  173 (203)
                      +|+++++   |++.+.+    +.+..   .++|+++.+||+|.++   .+.+.+..-...++         ..++++||+
T Consensus        84 LVVa~dDGv~pQTiEAI----~hak~---a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          84 LVVAADDGVMPQTIEAI----NHAKA---AGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             EEEEccCCcchhHHHHH----HHHHH---CCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            9999998   4443333    33333   5899999999999984   34555555555544         368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|.|+++++..++-...-+
T Consensus       154 tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         154 TGEGIDELLELILLLAEVL  172 (509)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999998777555444

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=1.2e-15  Score=123.52  Aligned_cols=150  Identities=18%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc---------------------------CCCCCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF---------------------------DSKSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..++|+++|+.++|||||+.+|+...  ...                           ......+.+.......+.....
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            45999999999999999999886311  000                           0001112223333334455567


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHH-------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF-------DHVARGVEELRAHADSSIR-IILIGNKSDLVDMW  149 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  149 (203)
                      .+.++|+||+..|.......+..+|++++|+|+.+. .+       .+.++.+..+..   .++| +++++||+|+....
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCchh
Confidence            889999999999998888889999999999999873 12       233333222222   3564 78899999976210


Q ss_pred             ------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 048709          150 ------AVSAEDVVEFAEDQG-----LFFSEASALNGDNVDT  180 (203)
Q Consensus       150 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  180 (203)
                            ....+++..++...+     ++++++||++|.|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                  012456677777665     6799999999999853

>PRK13351 elongation factor G; Reviewed

Probab=99.68  E-value=1.8e-15  Score=128.97  Aligned_cols=116  Identities=17%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC--C------ccCC----------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNE--F------CFDS----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~--~------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      +...+|+|+|..|+|||||+++|+...  .      ....          ....+.......+..  ....+++|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--DNHRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--CCEEEEEEECCCc
Confidence            456899999999999999999997521  0      0000          011112222222333  3568899999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ..|......+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            98888888899999999999999986555443333 33322   4789999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=1.8e-15  Score=127.77  Aligned_cols=153  Identities=25%  Similarity=0.214  Sum_probs=93.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------------CCC-------------------cceeeEEEEEEEC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------------KST-------------------IGVEFQTRTVTIN   73 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~~   73 (203)
                      ....++|+++|++++|||||+++|+...-....            .-+                   -+.+.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            345689999999999999999999864321110            000                   0111112222233


Q ss_pred             CEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH
Q 048709           74 SKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        74 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  153 (203)
                      ....++.|+||||...|.......+..+|++++|+|+.....-.. ...+..+...  ...++++++||+|+.+......
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence            334567899999998876655566889999999999976422111 1111222222  1256889999999864211112


Q ss_pred             ----HHHHHHHHHcC---CeEEEEecCCCCCHHH
Q 048709          154 ----EDVVEFAEDQG---LFFSEASALNGDNVDT  180 (203)
Q Consensus       154 ----~~~~~~~~~~~---~~~~~~sa~~~~~i~~  180 (203)
                          +++.++....+   ++++++||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                22333444444   4699999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.67  E-value=2.1e-15  Score=122.10  Aligned_cols=151  Identities=17%  Similarity=0.104  Sum_probs=97.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCcc----------------------CCC-----CCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCF----------------------DSK-----STIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~----------------------~~~-----~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..++|+++|+.++|||||+.+|+..  ....                      ..+     ...+.+.......+.....
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            4589999999999999999998651  1110                      000     1112223333344455567


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc--c
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---F---DHVARGVEELRAHADSSIR-IILIGNKSDLVD--M  148 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~--~  148 (203)
                      .+.|+||||+..|.......+..+|++++|+|+....-   +   .+..+.+..+..   .++| +++++||+|...  .
T Consensus        86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~~  162 (446)
T PTZ00141         86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVNY  162 (446)
T ss_pred             EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccchh
Confidence            88999999999988777777899999999999986420   0   122232233322   3555 679999999532  1


Q ss_pred             cCC----CHHHHHHHHHHc-----CCeEEEEecCCCCCHHH
Q 048709          149 WAV----SAEDVVEFAEDQ-----GLFFSEASALNGDNVDT  180 (203)
Q Consensus       149 ~~~----~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~  180 (203)
                      .+.    ..+++.+++...     .++++++|+.+|.|+.+
T Consensus       163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            111    123444444433     36799999999999863

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.8e-15  Score=120.73  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=118.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCC---------------CccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCc
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNE---------------FCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQ   87 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~   87 (203)
                      +.++-.++.|+-+-.-|||||..+|+...               ...+.....++.-.+..+.+ ++..+.++++||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            34667899999999999999999985421               11122234444444444443 456688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH----HHHHHHc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV----VEFAEDQ  163 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~~  163 (203)
                      ..|..-....+.-|+++++|+|++..-.-+.+..++..+.    .+..+|.|+||+|++..   ..+++    .+.....
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~a---dpe~V~~q~~~lF~~~  208 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSA---DPERVENQLFELFDIP  208 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCC---CHHHHHHHHHHHhcCC
Confidence            9988777777889999999999998654444444444333    46789999999999864   23333    3333344


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          164 GLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       164 ~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      ..+++.+||++|.|+.+++++|++.+....
T Consensus       209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             ccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            457999999999999999999999987643

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.66  E-value=4.9e-16  Score=110.09  Aligned_cols=124  Identities=23%  Similarity=0.328  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHh---hhcCCcEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSA---YYRGALGA  104 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~~  104 (203)
                      -.|+++|+.|||||+|+..|..+.......+.   .... ...+ +.....+.++|+||+.+.+.....   +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998554333111   1111 1112 223346789999999887764333   47889999


Q ss_pred             EEEEeCCC-HHHHHHHHHHHHHHHhh-c--CCCCcEEEEEeCCCCCcccCCCHHHHHH
Q 048709          105 VVVYDITK-RQSFDHVARGVEELRAH-A--DSSIRIILIGNKSDLVDMWAVSAEDVVE  158 (203)
Q Consensus       105 i~v~d~~~-~~s~~~~~~~~~~~~~~-~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~  158 (203)
                      |||+|.+. ......+.+++..+... .  ...+|+++++||.|+..  ..+...++.
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~--A~~~~~Ik~  135 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT--AKPPKKIKK  135 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-----HHHHHH
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc--cCCHHHHHH
Confidence            99999975 44555554444443322 2  36799999999999976  334444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.65  E-value=5.9e-15  Score=119.39  Aligned_cols=162  Identities=17%  Similarity=0.121  Sum_probs=99.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC------CCccCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN------EFCFDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      .-..++|+++|..++|||||+++|.+.      .....+        ....+.+.......+.....++.++||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            345699999999999999999999732      110000        011223333344445444567899999998877


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCC---HHHHHHHHHHc---
Q 048709           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVS---AEDVVEFAEDQ---  163 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---  163 (203)
                      -.....-+..+|++++|+|+.+...-+ ....+..+..   .++| +++++||+|+.+..+..   .+++.++....   
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            665555567799999999998643211 1222233322   4678 57889999997532211   12333444332   


Q ss_pred             --CCeEEEEecC---CCCC-------HHHHHHHHHHHHH
Q 048709          164 --GLFFSEASAL---NGDN-------VDTAFFRLLQEIY  190 (203)
Q Consensus       164 --~~~~~~~sa~---~~~~-------i~~~~~~i~~~~~  190 (203)
                        .++++.+|+.   +|.|       +.++++.+.+.+.
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence              3678888875   4555       6777777776654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.65  E-value=5.1e-15  Score=119.66  Aligned_cols=165  Identities=15%  Similarity=0.117  Sum_probs=103.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcc--eeeEEE---------------EEE--------EC--C
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIG--VEFQTR---------------TVT--------IN--S   74 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~--~~~~~~---------------~~~--------~~--~   74 (203)
                      ....++|+++|....|||||+.+|++....   .+..+..+  ..+...               ...        ++  +
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            355799999999999999999999874321   11111111  111100               000        00  0


Q ss_pred             ----EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           75 ----KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        75 ----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                          ....+.++|+||++.|-.....-+..+|++++|+|+.++....+..+.+..+...  .-.++++++||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHHH
Confidence                0236889999999988776666788999999999998741111222222222222  1236899999999875211


Q ss_pred             --CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          151 --VSAEDVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       151 --~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                        ...+++.++...   ...+++++||++|.|++.+++.|.+.+..
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence              112344444332   35789999999999999999988875543

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.63  E-value=2.8e-15  Score=97.54  Aligned_cols=136  Identities=20%  Similarity=0.197  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----hhhhhhHhhhcCCcEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----RYRAVTSAYYRGALGAV  105 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i  105 (203)
                      ||+++|..|+|||||+++|.+....  +..|       ..++++...    .+||||.-    .+.+-.-.....+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT-------QAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT-------QAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hccc-------ceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999886642  2222       223332222    57999942    23333344567899999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|-.++++++.     +-..+...  -..|+|-|++|.|++++  ...+..++++..-|. ++|.+|+.++.|+++++..
T Consensus        70 ~v~~and~~s~-----f~p~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESR-----FPPGFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCcccc-----CCcccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999997652     11112222  23459999999999973  345677888888875 6999999999999999987


Q ss_pred             HHH
Q 048709          185 LLQ  187 (203)
Q Consensus       185 i~~  187 (203)
                      +..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            754

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=8.5e-15  Score=115.21  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=118.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCccCCCCCcceeeEEEEEEE---CCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN---------------EFCFDSKSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~   87 (203)
                      .+-.+.+++-+-.-|||||..+|+..               ..+.+..+..++.-...++.+   +|..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            34567888999999999999998542               122333344555555555554   567899999999998


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHH-HHHHcCC-
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVE-FAEDQGL-  165 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~~~-  165 (203)
                      ..|.--...-+..|-++++|+|++..-.-+.+...+..+.+    +.-++.|+||+|++..   ..+.+++ +..-.|+ 
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~A---dpervk~eIe~~iGid  159 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAA---DPERVKQEIEDIIGID  159 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCC---CHHHHHHHHHHHhCCC
Confidence            88765445557789999999999987655555555555543    6779999999999863   3344433 3344555 


Q ss_pred             --eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          166 --FFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       166 --~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                        ..+.+|||+|.||+++++.|+++++....
T Consensus       160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             cchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence              47889999999999999999999877543

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.63  E-value=2.7e-14  Score=113.71  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE---------------------C-CEEEEEEEEeCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------------N-SKIIKAQIWDTAG   86 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~D~~g   86 (203)
                      ++|+++|.|++|||||+|+|++........+..+.++......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988776544344444444433221                     1 1236789999999


Q ss_pred             ch----hhhhhhHhh---hcCCcEEEEEEeCC
Q 048709           87 QE----RYRAVTSAY---YRGALGAVVVYDIT  111 (203)
Q Consensus        87 ~~----~~~~~~~~~---~~~~d~~i~v~d~~  111 (203)
                      ..    ....+-..+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    222333334   89999999999996

>PRK12739 elongation factor G; Reviewed

Probab=99.62  E-value=1.9e-14  Score=122.62  Aligned_cols=117  Identities=16%  Similarity=0.144  Sum_probs=80.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCc----------------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFC----------------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      .+...+|+++|.+++|||||+++|+..  ...                .+..+..+.+.....+..+  ..+++++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence            345689999999999999999999742  110                0011223333333344443  46789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ...+.......+..+|++++|+|+........ ...+..+..   .++|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            88887777788999999999999987533222 223333332   4689999999999864

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.61  E-value=1.3e-14  Score=110.54  Aligned_cols=136  Identities=10%  Similarity=0.044  Sum_probs=79.1

Q ss_pred             cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      .+...+.+....+.++|+++|.+|+||||++|+|++.+...... ...+..........+  +.++.+|||||.......
T Consensus        25 ~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~  102 (313)
T TIGR00991        25 LELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYI  102 (313)
T ss_pred             HHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHH
Confidence            34444555556778999999999999999999999987543221 222222222333334  467899999996543221


Q ss_pred             h-------Hhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCC
Q 048709           94 T-------SAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVS  152 (203)
Q Consensus        94 ~-------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~  152 (203)
                      .       ..++  ...|+++||..++.......-...+..+....+  --.+.|+++|+.|...++..+
T Consensus       103 ~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       103 NDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            1       1122  268999999665431110011122333333322  124589999999976433333

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.7e-14  Score=123.00  Aligned_cols=118  Identities=17%  Similarity=0.081  Sum_probs=81.0

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-----CC-------------CCCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-----DS-------------KSTIGVEFQTRTVTINSKIIKAQIWDTA   85 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~   85 (203)
                      ..+.-.+|+|+|.+++|||||+++|+...-..     ..             .+..+.+.....+.++  ..++.+||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTP   83 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTP   83 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECC
Confidence            34456799999999999999999997421100     00             1122222333333343  4678999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      |...+.......++.+|++++|+|+.+....... ..+..+..   .++|+++++||+|+..
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9988877778889999999999999875443322 23333332   4689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.61  E-value=4.7e-15  Score=117.26  Aligned_cols=175  Identities=15%  Similarity=0.121  Sum_probs=121.3

Q ss_pred             cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-----
Q 048709           15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-----   89 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----   89 (203)
                      ++....+|...++...++|+|.|++|||||+|.+...+....+.++++.....-  .++.+...|+++||||.-.     
T Consensus       155 rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEd  232 (620)
T KOG1490|consen  155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEED  232 (620)
T ss_pred             HHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhh
Confidence            455566777788889999999999999999999988877665545543333222  3455667899999999321     


Q ss_pred             hh----hhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH--HHHHHHH
Q 048709           90 YR----AVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE--DVVEFAE  161 (203)
Q Consensus        90 ~~----~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~  161 (203)
                      .+    ....+..+--.+|+|++|++...  |.+.-..++..+.... .+.|+|+|+||+|......+..+  ++.+...
T Consensus       233 rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~  311 (620)
T KOG1490|consen  233 RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTII  311 (620)
T ss_pred             hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence            11    11122334445699999999854  4444445566665544 67899999999998765444432  3444444


Q ss_pred             H-cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          162 D-QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       162 ~-~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      . .+++++++|+.+..|+-++.....+.++..
T Consensus       312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             hccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence            4 448999999999999999888888777653

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=9.1e-14  Score=111.13  Aligned_cols=154  Identities=21%  Similarity=0.193  Sum_probs=112.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +++.-|-++|...-|||||+..|-+..+.....-..+...--..+..+ .+-.++|.||||+..|..|...-..-.|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            356778899999999999999998877654332333333333333333 2256789999999999999988888999999


Q ss_pred             EEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709          106 VVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL  173 (203)
Q Consensus       106 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  173 (203)
                      +|+.++|.   ++.+.+       ......++|+++.+||+|.++   .+.+.+.+-+..++         +.++++||+
T Consensus       230 LVVAadDGVmpQT~EaI-------khAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl  299 (683)
T KOG1145|consen  230 LVVAADDGVMPQTLEAI-------KHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISAL  299 (683)
T ss_pred             EEEEccCCccHhHHHHH-------HHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecc
Confidence            99999983   443332       223336899999999999875   35566666665554         368999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~  190 (203)
                      +|.|++.+.+.++-...
T Consensus       300 ~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  300 TGENLDLLEEAILLLAE  316 (683)
T ss_pred             cCCChHHHHHHHHHHHH
Confidence            99999988877765443

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=2.4e-14  Score=117.92  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC-------------C-----CCCcceeeEEEEEEECCEEEEEEEEeCC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD-------------S-----KSTIGVEFQTRTVTINSKIIKAQIWDTA   85 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~   85 (203)
                      ....+|+|+|.+++|||||+++|+.  +.+...             .     ...-+.........++....++++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4568999999999999999999853  211100             0     0111233334444455556789999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      |+..|.......+..+|++++|+|+.+... .....++..+..   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            998887766778899999999999987421 122333333322   4789999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=2.4e-14  Score=101.81  Aligned_cols=152  Identities=23%  Similarity=0.289  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc---CCcEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR---GALGAV  105 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i  105 (203)
                      -.|+++|+.+||||+|+.+|..+......   +..+.....+.+...  .+.++|.||+++.+.-...++.   .+.+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            57999999999999999999888543322   112223333333322  2789999999988877777776   788999


Q ss_pred             EEEeCCC-HHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH--------------------
Q 048709          106 VVYDITK-RQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE--------------------  161 (203)
Q Consensus       106 ~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--------------------  161 (203)
                      ||+|... ........+++..+.-.+   ...+|++++.||.|+.-.  .+.+.+++...                    
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA--kt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed  191 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA--KTAEKIRQQLEKEIHKLRESRSALRSISDED  191 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc--CcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            9999764 233444444444443333   477999999999998642  11111111110                    


Q ss_pred             --------------------HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          162 --------------------DQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       162 --------------------~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                                          ...+.|.++|++++ +++++-+||.+.
T Consensus       192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                12245788899888 899999998765

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=5.2e-14  Score=109.49  Aligned_cols=118  Identities=16%  Similarity=0.196  Sum_probs=88.8

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSD  144 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  144 (203)
                      .+.+.+||++|+...+..|..++.++++++||+|.++.          ..+.+....+..+..... .++|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46789999999999999999999999999999999873          345555555555555433 6899999999999


Q ss_pred             CCcc----------------cCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          145 LVDM----------------WAVSAEDVVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       145 ~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      +...                .....+++..|...          ..+....++|.+..+++.+|+.+.+.+....
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            6431                12345566555432          2345677899999999999999988887643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=1e-13  Score=118.16  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=78.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc--CCCc-c--C-------------CCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK--NEFC-F--D-------------SKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~--~~~~-~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      .+.-.+|+++|.+++|||||+++|+.  +... .  .             ..+..+.+.....+...  ..+++++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            44567999999999999999999973  2111 0  0             11223333333334443  45789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ...|.......+..+|++++|+|+...-..... ..+..+..   .++|+++++||+|+.+
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            887766566678899999999999865333322 22233333   4688999999999863

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.58  E-value=2.2e-14  Score=107.59  Aligned_cols=131  Identities=14%  Similarity=0.167  Sum_probs=78.6

Q ss_pred             ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-
Q 048709           14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-   91 (203)
Q Consensus        14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-   91 (203)
                      +.++..+.....+..++|+|+|.+|+|||||+|+|++........ ...+..........++  ..+.+|||||..... 
T Consensus        17 ~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~   94 (249)
T cd01853          17 ALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVM   94 (249)
T ss_pred             HHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchh
Confidence            344445555566788999999999999999999999987543321 2222333333333344  568999999954331 


Q ss_pred             -h-h-------hHhhhc--CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCc
Q 048709           92 -A-V-------TSAYYR--GALGAVVVYDITKRQ-SFDHVARGVEELRAHADS--SIRIILIGNKSDLVD  147 (203)
Q Consensus        92 -~-~-------~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~  147 (203)
                       . .       ...++.  ..|++++|..++... ...+ ...+..+....+.  -.++++|+||+|...
T Consensus        95 ~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853          95 DQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence             0 1       122333  568888887665421 1121 1333333333321  145899999999853

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK12740 elongation factor G; Reviewed

Probab=99.56  E-value=1.5e-13  Score=117.18  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             EcCCCCcHHHHHHHHhcCCCc--------c----------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Q 048709           34 IGDSAVGKSQILSRFTKNEFC--------F----------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTS   95 (203)
Q Consensus        34 vG~~~sGKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   95 (203)
                      +|++++|||||+++|+...-.        .          +..+..+.......+.+.  .+.+++|||||...+.....
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence            699999999999999542110        0          001222233333334443  46789999999988877777


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .++..+|++++|+|++........ ..+..+..   .++|+++++||+|...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            889999999999999886544433 22233322   4789999999999863

>PRK13768 GTPase; Provisional

Probab=99.55  E-value=6.2e-14  Score=105.77  Aligned_cols=111  Identities=18%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             EEEEEeCCCchhhh---hhhHhh---hcC--CcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           78 KAQIWDTAGQERYR---AVTSAY---YRG--ALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        78 ~~~l~D~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      .+.+||+||+....   .....+   +..  .+++++|+|+......... ..++..+......+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            68999999975532   222222   333  8899999999764332222 11111211111247899999999998763


Q ss_pred             cCCCHHHHHHH----------------------------HHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          149 WAVSAEDVVEF----------------------------AEDQG--LFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       149 ~~~~~~~~~~~----------------------------~~~~~--~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .+  .++..++                            ....+  .+++++|++++.|+++++++|.+.+.
T Consensus       178 ~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            22  1222111                            12223  57899999999999999999988763

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.55  E-value=6.1e-14  Score=103.49  Aligned_cols=168  Identities=17%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-------CCCCcceeeEEEEEEE-----------------CC-----
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-------SKSTIGVEFQTRTVTI-----------------NS-----   74 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~-----------------~~-----   74 (203)
                      ...++..|+|+|..|||||||+.+|...-....       .+|..-..++...+.+                 +|     
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts   94 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS   94 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence            456679999999999999999999865322111       1111111111111111                 00     


Q ss_pred             -------------------EEEEEEEEeCCCchh-h-----hhhhHhhh--cCCcEEEEEEeCCC---HHHHHHHHHHHH
Q 048709           75 -------------------KIIKAQIWDTAGQER-Y-----RAVTSAYY--RGALGAVVVYDITK---RQSFDHVARGVE  124 (203)
Q Consensus        75 -------------------~~~~~~l~D~~g~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~  124 (203)
                                         ..+++.++||||+.. |     ..+...-+  ...-++++|+|...   +.+|  +..++.
T Consensus        95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlY  172 (366)
T KOG1532|consen   95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLY  172 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHH
Confidence                               135689999999632 2     22222222  23356788888654   4444  335555


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCccc-----CCCHHHHHHHHH---------------------HcCCeEEEEecCCCCCH
Q 048709          125 ELRAHADSSIRIILIGNKSDLVDMW-----AVSAEDVVEFAE---------------------DQGLFFSEASALNGDNV  178 (203)
Q Consensus       125 ~~~~~~~~~~p~ivv~nK~D~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~sa~~~~~i  178 (203)
                      .+......+.|+|++.||+|+.+..     -...+..++...                     ..++..+-+|+.+|.|.
T Consensus       173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~  252 (366)
T KOG1532|consen  173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF  252 (366)
T ss_pred             HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence            5556666799999999999997631     111111111111                     12356888999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 048709          179 DTAFFRLLQEIYALS  193 (203)
Q Consensus       179 ~~~~~~i~~~~~~~~  193 (203)
                      +++|..+.+.+-++.
T Consensus       253 ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  253 DDFFTAVDESVDEYE  267 (366)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888776643

>smart00275 G_alpha G protein alpha subunit

Probab=99.55  E-value=2.5e-13  Score=106.52  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  145 (203)
                      ..+.+||.+|+...+..|..++.++++++||+|+++.          ..+.+....+..+..... .++|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            5678999999999999999999999999999999973          345555555666555433 67999999999998


Q ss_pred             Ccc---------------cCCCHHHHHHHHHH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          146 VDM---------------WAVSAEDVVEFAED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       146 ~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      ...               .....+.+..|...           ..+..+.++|.+-.++..+|+.+.+.+....
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            531               01244555554432           1245677889999999999999888877643

Subunit of G proteins that contains the guanine nucleotide binding site

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.54  E-value=9.9e-14  Score=102.17  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhH---
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTS---   95 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~---   95 (203)
                      ++|+|+|.+||||||++|.|++........  ...+..........++  ..+.++||||.....        .+..   
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999988654432  2233344444456666  456899999932211        1111   


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcccCC----C---HHHHHHHHHHcCCe
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDMWAV----S---AEDVVEFAEDQGLF  166 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~----~---~~~~~~~~~~~~~~  166 (203)
                      ....+.|++++|+.+.... ..+ ...+..+....+.  -.-++||+|..|...+...    .   ...+.++....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~t-~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFT-EED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-S-HHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcch-HHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2245789999999998432 111 1222333333321  1348899999987654321    0   12345566677778


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHHh
Q 048709          167 FSEASAL------NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       167 ~~~~sa~------~~~~i~~~~~~i~~~~~~~  192 (203)
                      +..++.+      ....+.++|+.|-+.+.+-
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8877776      2345777776666665554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=8.3e-14  Score=108.28  Aligned_cols=152  Identities=22%  Similarity=0.250  Sum_probs=98.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CC----------------------ccCCC-----CCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EF----------------------CFDSK-----STIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~----------------------~~~~~-----~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..++++|+|+..+|||||+-+|+..  .+                      ....+     +.-+.+.......++...+
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            4599999999999999999998542  00                      01111     1223344444444555566


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      .+.++|+||+..|-...-.-+..+|+.|+|+|+...+   .|   .+.++- ..+.+..+ -..+|+++||+|..+.++.
T Consensus        86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG-i~~lIVavNKMD~v~wde~  163 (428)
T COG5256          86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG-IKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC-CceEEEEEEcccccccCHH
Confidence            8999999998887776666788999999999998753   11   111111 11222222 2348999999999875444


Q ss_pred             CHHHHHHH----HHHcC-----CeEEEEecCCCCCHHH
Q 048709          152 SAEDVVEF----AEDQG-----LFFSEASALNGDNVDT  180 (203)
Q Consensus       152 ~~~~~~~~----~~~~~-----~~~~~~sa~~~~~i~~  180 (203)
                      .++++..-    ....+     ++|+++|+..|.|+.+
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            44544433    33333     5699999999998764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.53  E-value=9.1e-15  Score=114.21  Aligned_cols=175  Identities=11%  Similarity=0.099  Sum_probs=88.6

Q ss_pred             ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCC--cceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKST--IGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      .+.+...+......+++|+|+|.+|+|||||||+|.|-.-. +...++  ..++.....+...... .+.+||.||....
T Consensus        21 ~s~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~   99 (376)
T PF05049_consen   21 VSKIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTP   99 (376)
T ss_dssp             HHHHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGS
T ss_pred             HHHHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCC
Confidence            33344444444456799999999999999999999774322 122121  1112222233222211 4789999996544


Q ss_pred             hhhhHhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------cccCCCH----H
Q 048709           91 RAVTSAY-----YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV-------DMWAVSA----E  154 (203)
Q Consensus        91 ~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~----~  154 (203)
                      ......|     +...|.+|++.+-.=.+.--   .+...+.+   .++|+++|.||+|..       .++....    +
T Consensus       100 ~f~~~~Yl~~~~~~~yD~fiii~s~rf~~ndv---~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~  173 (376)
T PF05049_consen  100 NFPPEEYLKEVKFYRYDFFIIISSERFTENDV---QLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQ  173 (376)
T ss_dssp             S--HHHHHHHTTGGG-SEEEEEESSS--HHHH---HHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHH
T ss_pred             CCCHHHHHHHccccccCEEEEEeCCCCchhhH---HHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHH
Confidence            3333444     45678888777654332222   22233333   478899999999961       1112222    2


Q ss_pred             HHHHHHH----HcCC---eEEEEecCCC--CCHHHHHHHHHHHHHHhhcc
Q 048709          155 DVVEFAE----DQGL---FFSEASALNG--DNVDTAFFRLLQEIYALSKK  195 (203)
Q Consensus       155 ~~~~~~~----~~~~---~~~~~sa~~~--~~i~~~~~~i~~~~~~~~~~  195 (203)
                      ++++.+.    ..++   ++|.+|+.+-  ..+..+.+.+.+.+...++.
T Consensus       174 ~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  174 EIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            3333332    2343   5888998864  56888888888877766553

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.53  E-value=4.7e-13  Score=105.72  Aligned_cols=88  Identities=18%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCch
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQE   88 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~   88 (203)
                      .....++|+++|.||+|||||+|+|++........|.++.++....+.+.+..               .++.++|+||..
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            34567899999999999999999999887766655666666666666554322               358999999943


Q ss_pred             h-------hhhhhHhhhcCCcEEEEEEeCC
Q 048709           89 R-------YRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        89 ~-------~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                      .       .....-..++.+|++++|+|..
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            2       1112233568899999999973

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.51  E-value=5.2e-13  Score=100.79  Aligned_cols=164  Identities=16%  Similarity=0.280  Sum_probs=115.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCC--
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGA--  101 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~--  101 (203)
                      +..-+|+|+|..|+||||||.+|.+.+   ......+..+....+.-+  +...++.+|-.-|.-.+..+....+...  
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~  126 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL  126 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence            355789999999999999999999876   233444444444333222  2234678898888766666555544333  


Q ss_pred             --cEEEEEEeCCCH-HHHHHHHHHHHHHHhh-------------------------------------------------
Q 048709          102 --LGAVVVYDITKR-QSFDHVARGVEELRAH-------------------------------------------------  129 (203)
Q Consensus       102 --d~~i~v~d~~~~-~s~~~~~~~~~~~~~~-------------------------------------------------  129 (203)
                        .++|++.|.+++ .-++.+..|...+...                                                 
T Consensus       127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de  206 (473)
T KOG3905|consen  127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE  206 (473)
T ss_pred             cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence              368899999998 4455567776554332                                                 


Q ss_pred             ------------cCCCCcEEEEEeCCCCCc----ccC-------CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          130 ------------ADSSIRIILIGNKSDLVD----MWA-------VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       130 ------------~~~~~p~ivv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                                  ...++|++||+||+|...    ..+       .....++.||.++|..++.+|++...|++-+..+|+
T Consensus       207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv  286 (473)
T KOG3905|consen  207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV  286 (473)
T ss_pred             ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence                        113589999999999842    111       112356888999999999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      ..++..
T Consensus       287 hr~yG~  292 (473)
T KOG3905|consen  287 HRSYGF  292 (473)
T ss_pred             HHhcCc
Confidence            988763

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.51  E-value=1e-12  Score=114.49  Aligned_cols=145  Identities=19%  Similarity=0.239  Sum_probs=95.7

Q ss_pred             CcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-----------E-----EEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           39 VGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-----------I-----IKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        39 sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ++||||+.+|.+........-..+.+.-...++.+..           .     -.+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3499999999988775444333333333333333210           0     12789999999999888888888999


Q ss_pred             EEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC----------------HHHHH----HH
Q 048709          103 GAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS----------------AEDVV----EF  159 (203)
Q Consensus       103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~  159 (203)
                      ++++|+|+++   +++++.+.    .+..   .++|+++++||+|+...+...                .+++.    +.
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999987   44544432    2222   367999999999986432210                01110    00


Q ss_pred             ---HHHc---------------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          160 ---AEDQ---------------GLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       160 ---~~~~---------------~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                         +...               .++++++||++|.|+++++.+|.....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence               1111               358999999999999999988765443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.51  E-value=2e-13  Score=105.93  Aligned_cols=106  Identities=15%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCH
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSA  153 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~  153 (203)
                      ++.+.|+||+|...-.   ......+|.+++|.+....+....+..-   +.     ...-++|+||+|+.....  ...
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~g---i~-----E~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKKG---IM-----ELADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHhh---hh-----hhhheEEeehhcccchhHHHHHH
Confidence            4678999999955322   2246679999999875555554433321   11     122389999999875321  122


Q ss_pred             HHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          154 EDVVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       154 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .++......       +..+++.+||+++.|++++++.|.+.+..+
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            233333322       235899999999999999999999887644

>TIGR00101 ureG urease accessory protein UreG

Probab=99.49  E-value=1.2e-12  Score=95.40  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV  156 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  156 (203)
                      ....++++.|..-.....+ .  -+|.++.|+|+.+.++...  .....+.      ..-++++||+|+........+.+
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            4566778887322111111 1  2577999999987655321  1111111      11289999999975322233344


Q ss_pred             HHHHH--HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          157 VEFAE--DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       157 ~~~~~--~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      .+.++  ..+.+++++||++|.|++++++++.+.+
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            44444  3568899999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.8e-13  Score=117.01  Aligned_cols=118  Identities=14%  Similarity=0.148  Sum_probs=80.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC---------------CCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN---------------EFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      ....+|+++|+.++|||||+++|+..               ++...   ...|.........+.+++..+++++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45689999999999999999999742               11111   1112222222223345667788999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ..|.......+..+|++++|+|+......... ..+..+..   .+.|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH---cCCCEEEEEEChhccc
Confidence            88887778889999999999999874222221 22222222   4678899999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.46  E-value=2.4e-12  Score=103.75  Aligned_cols=171  Identities=19%  Similarity=0.196  Sum_probs=126.3

Q ss_pred             CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR   99 (203)
Q Consensus        20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   99 (203)
                      +........++..|+|+.++|||.+++++.++.+...+..+....+........+....+.+.|.+-. ....+...- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            33445567899999999999999999999999988877677777777777777777777888888754 222222222 7


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCCe-EEEEecCCCCC
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGLF-FSEASALNGDN  177 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~sa~~~~~  177 (203)
                      .||+++++||.+++.++..+...++.-...  ...|+++|++|+|+.+..+ ...+. .+++.+++++ .+.+|++....
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC
Confidence            799999999999999998887665543333  6899999999999976432 22233 7788899885 56677774333


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 048709          178 VDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       178 i~~~~~~i~~~~~~~~~~~  196 (203)
                       .++|..|..+.....-+.
T Consensus       572 -~~lf~kL~~~A~~Ph~~~  589 (625)
T KOG1707|consen  572 -NELFIKLATMAQYPHIPR  589 (625)
T ss_pred             -chHHHHHHHhhhCCCccc
Confidence             789998888877655333

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.46  E-value=6e-12  Score=98.47  Aligned_cols=83  Identities=20%  Similarity=0.125  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchhh---
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQERY---   90 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~---   90 (203)
                      ++|+++|.|++|||||+|+|++........|.++.++....+.+.+..               .++.+.|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            799999999999999999999988655555666666666555554421               25899999994321   


Q ss_pred             ----hhhhHhhhcCCcEEEEEEeCC
Q 048709           91 ----RAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        91 ----~~~~~~~~~~~d~~i~v~d~~  111 (203)
                          ....-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                112223468999999999984

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.45  E-value=8.7e-12  Score=97.88  Aligned_cols=143  Identities=18%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC----CCc------------cCCCCC---cceeeEE-----EEEE-ECCEEEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFC------------FDSKST---IGVEFQT-----RTVT-INSKIIKAQ   80 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~-~~~~~~~~~   80 (203)
                      ...+.|+|+|+.++|||||+|+|.+.    ...            ++..+.   +++++..     .++. .++....+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34699999999999999999999887    333            111121   2222222     2222 245567899


Q ss_pred             EEeCCCchhh--------hh------h---------------hHhhhc-CCcEEEEEE-eCC--C--HHHHHHH-HHHHH
Q 048709           81 IWDTAGQERY--------RA------V---------------TSAYYR-GALGAVVVY-DIT--K--RQSFDHV-ARGVE  124 (203)
Q Consensus        81 l~D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~--~--~~s~~~~-~~~~~  124 (203)
                      ++||+|...-        ..      .               .+..+. ++|+.++|. |.+  +  ++.+... .+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999992111        00      0               122345 889988888 764  1  1122222 35556


Q ss_pred             HHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709          125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus       125 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      .+..   .++|+++++||.|-...  ...+...++...++++++.+|+.
T Consensus       175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~  218 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVE  218 (492)
T ss_pred             HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHH
Confidence            6555   58999999999994432  23444556667788998888875

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.44  E-value=4.2e-12  Score=102.73  Aligned_cols=165  Identities=20%  Similarity=0.329  Sum_probs=114.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhhhhhhHhhhcCC-
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERYRAVTSAYYRGA-  101 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~-  101 (203)
                      ....-.|+|+|..++|||||+.+|.+.+   ...++.+.++....+.-+  ....++.+|-..|...+..+....+... 
T Consensus        22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~   98 (472)
T PF05783_consen   22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN   98 (472)
T ss_pred             CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence            3445789999999999999999997654   334566666666555432  2234689999988777777665555432 


Q ss_pred             ---cEEEEEEeCCCHHHHH-HHHHHHHHHHhh------------------------------------------------
Q 048709          102 ---LGAVVVYDITKRQSFD-HVARGVEELRAH------------------------------------------------  129 (203)
Q Consensus       102 ---d~~i~v~d~~~~~s~~-~~~~~~~~~~~~------------------------------------------------  129 (203)
                         -++++|+|.+.|..+- .+..|+..+...                                                
T Consensus        99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~  178 (472)
T PF05783_consen   99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD  178 (472)
T ss_pred             ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence               3589999999875433 344443332211                                                


Q ss_pred             --------------cCCCCcEEEEEeCCCCCcc---c----C----CCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          130 --------------ADSSIRIILIGNKSDLVDM---W----A----VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       130 --------------~~~~~p~ivv~nK~D~~~~---~----~----~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                                    ...++|++||++|+|....   .    +    ...+-++.+|..+|+.++.||++...+++-++.+
T Consensus       179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~y  258 (472)
T PF05783_consen  179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKY  258 (472)
T ss_pred             cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHH
Confidence                          0013899999999997431   0    0    1123367778899999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      |...++..
T Consensus       259 i~h~l~~~  266 (472)
T PF05783_consen  259 ILHRLYGF  266 (472)
T ss_pred             HHHHhccC
Confidence            88887664

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01882 BMS1 Bms1

Probab=99.44  E-value=5.2e-12  Score=93.83  Aligned_cols=141  Identities=16%  Similarity=0.101  Sum_probs=83.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ...+..|+++|.+|+|||||++.|.+...........+.    ..+ ......++.++||||..  ..+. ...+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEE
Confidence            445688999999999999999999875221111111111    111 11234567899999854  2222 346889999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCcccCC---CHHHHHH-HHH--HcCCeEEEEecCCCCC
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSDLVDMWAV---SAEDVVE-FAE--DQGLFFSEASALNGDN  177 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~-~~~--~~~~~~~~~sa~~~~~  177 (203)
                      ++|+|++....... ...+..+..   .+.|. ++|+||+|+.+....   ...++++ +..  ..+.+++.+||+++..
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            99999986433222 122233322   35674 559999998642111   1122222 221  2346899999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.43  E-value=5.8e-14  Score=104.72  Aligned_cols=109  Identities=19%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             EEEEEeCCCchhhhhhhHhhh--------cCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           78 KAQIWDTAGQERYRAVTSAYY--------RGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      .+.++|||||.++-..+....        ...-++++++|+..   +..+-  ..++..+......+.|.+.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            689999999877655443322        34457888898864   33332  233333333333589999999999997


Q ss_pred             ccc-------CCCH------------HHHHHHHH---HcC-C-eEEEEecCCCCCHHHHHHHHHHH
Q 048709          147 DMW-------AVSA------------EDVVEFAE---DQG-L-FFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       147 ~~~-------~~~~------------~~~~~~~~---~~~-~-~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      ...       -...            ....+++.   ..+ . .++.+|+.++.|+.+++..+-+.
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            621       0000            00111111   122 3 69999999999999998777654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.42  E-value=1.4e-12  Score=92.57  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=68.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC---------------CE--------------------
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN---------------SK--------------------   75 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~--------------------   75 (203)
                      |+|+|..++|||||+|+|++.++.+......+..+.......+               ..                    
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            7899999999999999999987544332222111111111100               00                    


Q ss_pred             -------------------EEEEEEEeCCCchh----hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCC
Q 048709           76 -------------------IIKAQIWDTAGQER----YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS  132 (203)
Q Consensus        76 -------------------~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  132 (203)
                                         ...+.|+||||...    ...+...|++.+|++++|.+++...+-.....+......   .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~  157 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---D  157 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---T
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---C
Confidence                               12478999999533    335677888999999999999985544444333333332   2


Q ss_pred             CCcEEEEEeCC
Q 048709          133 SIRIILIGNKS  143 (203)
Q Consensus       133 ~~p~ivv~nK~  143 (203)
                      ...+++|.||.
T Consensus       158 ~~~~i~V~nk~  168 (168)
T PF00350_consen  158 KSRTIFVLNKA  168 (168)
T ss_dssp             CSSEEEEEE-G
T ss_pred             CCeEEEEEcCC
Confidence            33489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.42  E-value=3.7e-12  Score=98.53  Aligned_cols=118  Identities=16%  Similarity=0.216  Sum_probs=87.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH----------HHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ----------SFDHVARGVEELRAHAD-SSIRIILIGNKSD  144 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  144 (203)
                      ...+.++|.+||...+.-|..+|.+++++|||+++++.+          .+.+...+++.+.+... .+.++|+++||.|
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D  273 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD  273 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence            367899999999998888999999999999999998621          22233455555555544 7799999999999


Q ss_pred             CCcc---------------cCCCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          145 LVDM---------------WAVSAEDVVEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       145 ~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      +...               .....+++..+...          ..+.+..+.|.+-.+|+.+|..+.+.+....
T Consensus       274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            8531               11345566555432          2345667789999999999999998887643

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.42  E-value=1.2e-12  Score=88.08  Aligned_cols=114  Identities=30%  Similarity=0.376  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997766643332 2221                           222234567788999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      ++.++..+++.+  |...+......++|.++++||.|+.+..+...++..        .++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999988765  766666555567889999999998543333333332        35577889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.41  E-value=1e-12  Score=98.64  Aligned_cols=96  Identities=22%  Similarity=0.197  Sum_probs=77.3

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF  166 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (203)
                      ++++.+.+.++.++|++++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+.+......+.+..+ ...+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567777888999999999999999877 89999999876543   5789999999999975433333334433 457889


Q ss_pred             EEEEecCCCCCHHHHHHHHHH
Q 048709          167 FSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       167 ~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ++++||++|.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.4e-12  Score=98.34  Aligned_cols=166  Identities=17%  Similarity=0.127  Sum_probs=108.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC---ccCCCCCccee------------------eEEEEEEEC------CEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF---CFDSKSTIGVE------------------FQTRTVTIN------SKIIK   78 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~---~~~~~~~~~~~------------------~~~~~~~~~------~~~~~   78 (203)
                      +..++|.++|...-|||||..+|.+--.   +.+.....++.                  .+...-.+.      .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            4579999999999999999999976311   11111111100                  111111111      12357


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHH
Q 048709           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDV  156 (203)
Q Consensus        79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~  156 (203)
                      +.|.|+||++-.-..+-.-..-.|++++|++++.+.-..+.++-+..+....  -..++++-||+|+...+  ..+++++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8899999987655544444455699999999998543333333333333332  23489999999997642  2456778


Q ss_pred             HHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          157 VEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       157 ~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      ++|.+.   .+.|++++||..+.|++-+++.|.+.+....
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            888764   4679999999999999999999988876543

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.40  E-value=2.2e-12  Score=110.67  Aligned_cols=118  Identities=15%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC--CccCC--------------CCCcceeeEEEE--EEECCEEEEEEEEeCCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE--FCFDS--------------KSTIGVEFQTRT--VTINSKIIKAQIWDTAG   86 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~--~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g   86 (203)
                      .++-.+|+++|+.++|||||+.+|+...  .....              ....+.......  +..++....++|+||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            3456789999999999999999997521  11000              001111111112  22344567889999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      ...|.......++.+|++++|+|+........ ...+.....   .+.|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHH---cCCCeEEEEECchhh
Confidence            98887777788999999999999987532222 222232222   256789999999975

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.39  E-value=7.6e-12  Score=95.54  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC----------CCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------   89 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   89 (203)
                      -.++|+|+|.+|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3689999999999999999999987554332          12233333344455578889999999999211       


Q ss_pred             hhhh-------hHhhh-------------cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           90 YRAV-------TSAYY-------------RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        90 ~~~~-------~~~~~-------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      +..+       ...++             ..+|+++++++.+... .-.++ ..+..+.    ..+++|.|+.|+|....
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-H
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCH
Confidence            1110       00111             3568999999987521 11122 2222222    46789999999997542


Q ss_pred             cC--CCHHHHHHHHHHcCCeEEEEec
Q 048709          149 WA--VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       149 ~~--~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      .+  .-.+.+.+-+...+++++....
T Consensus       158 ~el~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  158 EELQAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHHHHcCceeecccc
Confidence            11  1123344445567777665443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=5.2e-12  Score=109.76  Aligned_cols=118  Identities=18%  Similarity=0.172  Sum_probs=79.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc--c--------------CCCCCcceeeEEEEEEE--------------CC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC--F--------------DSKSTIGVEFQTRTVTI--------------NS   74 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~   74 (203)
                      .++-.+|+|+|+.++|||||+++|+...-.  .              +.....+.......+.+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            445689999999999999999999753210  0              00011111111222222              12


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      ....++++||||+..|.......++.+|++|+|+|+...-..... ..+..+..   .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence            356789999999999887777788999999999999875433222 22233332   578999999999987

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.36  E-value=7e-12  Score=92.08  Aligned_cols=151  Identities=13%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC-CC--c---cCCCCCccee------eEEEEEEE-CC-------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN-EF--C---FDSKSTIGVE------FQTRTVTI-NS-------------------   74 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~-~~--~---~~~~~~~~~~------~~~~~~~~-~~-------------------   74 (203)
                      ....|+|+|..|||||||++++... ..  .   .......+.+      .....+.. ++                   
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            4688999999999999999998653 10  0   0000000000      00000001 11                   


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                      ....+.+++|.|.-.. .  ..+....+..+.|+|+.+.+...  ..... .     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~-~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKYPG-M-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhhHh-H-----HhhCCEEEEEHHHccccchhhHH
Confidence            1235666777662100 0  01112234456677776543211  01111 1     24567999999999753222334


Q ss_pred             HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          155 DVVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       155 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      +..+..+..  ..+++++||++|.|++++++++.+.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            454444443  4889999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PTZ00416 elongation factor 2; Provisional

Probab=99.36  E-value=6.7e-12  Score=108.92  Aligned_cols=117  Identities=19%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC--ccC--------------CCCCcceeeEEEEEEEC--------CEEEEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF--CFD--------------SKSTIGVEFQTRTVTIN--------SKIIKAQI   81 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------~~~~~~~l   81 (203)
                      +...+|+++|+.++|||||+++|+...-  ...              .....+.......+.+.        +....+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4557999999999999999999976221  100              00111111111222222        22567899


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      +||||...|.......++.+|++++|+|+.+.-.... ...+..+..   .++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            9999998887777778899999999999987533222 233333333   468999999999986

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.36  E-value=1.1e-12  Score=96.86  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=90.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC------C-----CccCCCCCcc---------------eeeEEEEEEECCE-----
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN------E-----FCFDSKSTIG---------------VEFQTRTVTINSK-----   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~------~-----~~~~~~~~~~---------------~~~~~~~~~~~~~-----   75 (203)
                      +.+.|+|.|+||+|||||++.|...      +     ++++++.+-+               ...+.+.+.-.+.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            5689999999999999999988431      1     1222211100               2223333322221     


Q ss_pred             -------------EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709           76 -------------IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK  142 (203)
Q Consensus        76 -------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  142 (203)
                                   .+.+.|++|.|--...   -....-+|.+++|......+..+-++.-+.++..        ++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence                         3678888988722211   2356678999999998776665555544444443        899999


Q ss_pred             CCCCcccCCCHHHHHHHHHH-------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          143 SDLVDMWAVSAEDVVEFAED-------QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       143 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .|.+.. .....++......       +..|++.|||.++.|++++++.|.++....
T Consensus       177 aD~~gA-~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGA-DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHH-HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHH-HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            997543 2223344443332       235899999999999999999998866543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.35  E-value=2.3e-11  Score=92.96  Aligned_cols=152  Identities=25%  Similarity=0.290  Sum_probs=102.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc------------c-------------------CCCCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC------------F-------------------DSKSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~   74 (203)
                      ...++++.+|...-||||||-+|+.....            .                   ......|++.......+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            35699999999999999999998653110            0                   0012334445554444555


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                      ...+|.+.||||++.|...+..-..-||++|+++|+...- +++.++- ..+....+ -..+++.+||+|+.+-.+...+
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRH-s~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRH-SFIASLLG-IRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHH-HHHHHHhC-CcEEEEEEeeecccccCHHHHH
Confidence            5678999999999999988877788899999999997532 2222111 11222221 2348899999999875443333


Q ss_pred             ----HHHHHHHHcCC---eEEEEecCCCCCHHH
Q 048709          155 ----DVVEFAEDQGL---FFSEASALNGDNVDT  180 (203)
Q Consensus       155 ----~~~~~~~~~~~---~~~~~sa~~~~~i~~  180 (203)
                          +-..|+...++   .++++||..|+|+..
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence                44566777765   589999999988753

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.34  E-value=1.7e-11  Score=94.93  Aligned_cols=102  Identities=18%  Similarity=0.001  Sum_probs=64.5

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED  155 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  155 (203)
                      .+.+.|+||+|....   .......+|.++++......+.   +......+     .++|.++++||+|+.....  ...
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~--~~~  192 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATN--VTI  192 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhH--HHH
Confidence            467899999984321   2235667888888865443332   32222222     2466799999999875321  111


Q ss_pred             H--------HHHHH---HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          156 V--------VEFAE---DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       156 ~--------~~~~~---~~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .        ..+..   .+..+++.+||+++.|++++++++.+...
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            1        11111   12346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.33  E-value=3.7e-11  Score=99.37  Aligned_cols=123  Identities=14%  Similarity=0.147  Sum_probs=74.6

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC-CcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hh-
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AV-   93 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~-   93 (203)
                      .+.+..++|+|+|.+|+||||++|+|++......... ..+..........++  ..+.++||||.....       .. 
T Consensus       113 ~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeIL  190 (763)
T TIGR00993       113 DPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKIL  190 (763)
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHH
Confidence            3345678999999999999999999999865433321 122222222223344  568999999954321       11 


Q ss_pred             --hHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCc
Q 048709           94 --TSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILIGNKSDLVD  147 (203)
Q Consensus        94 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~  147 (203)
                        ...++.  ..|++|+|..++.......-..++..+...++..  ..+|||+|+.|...
T Consensus       191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence              112333  5799999988764322111124445555444422  34799999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.4e-11  Score=101.84  Aligned_cols=158  Identities=21%  Similarity=0.263  Sum_probs=103.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC------------CE-E---EEEEEEeCCCchhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN------------SK-I---IKAQIWDTAGQERYR   91 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~---~~~~l~D~~g~~~~~   91 (203)
                      ..=+||+|...+|||-|+..+.+.++........+.......++..            +. .   --+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            3558999999999999999998866544332222211111111111            00 0   136789999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-------------CCHHH
Q 048709           92 AVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-------------VSAED  155 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~  155 (203)
                      .+.......||.+|+|+|+.+.   ++.+.+    +.++.   +++|+||.+||+|..-.|.             ....-
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            9999999999999999999873   333332    23333   5899999999999753211             01111


Q ss_pred             -----------HHHHHHH--------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          156 -----------VVEFAED--------------QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       156 -----------~~~~~~~--------------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                                 +.+|+.+              .-+.++++||..|.||.+++-+|++.....
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                       1122211              013578899999999999999999877654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.33  E-value=3.4e-12  Score=96.41  Aligned_cols=156  Identities=19%  Similarity=0.123  Sum_probs=108.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch---------hhhhhhH
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE---------RYRAVTS   95 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~   95 (203)
                      .....-|.|||.+|+|||||+++|++-...+...-..+.+++.......... .+.+.||.|.-         .|....+
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            4455779999999999999999999777766666666677666666654333 46889999932         2233222


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR----IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                       ....+|.++.|.|+++|..-++....+..+....-+..|    ++=|-||+|..... ...+       .++  .+.+|
T Consensus       254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~E-------~n~--~v~is  322 (410)
T KOG0410|consen  254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEEE-------KNL--DVGIS  322 (410)
T ss_pred             -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cccc-------cCC--ccccc
Confidence             257889999999999998777766666665554333333    45567888875431 1111       111  56789


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 048709          172 ALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |++|.|.+++.+.+-.+....
T Consensus       323 altgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             cccCccHHHHHHHHHHHhhhh
Confidence            999999999998888777664

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.32  E-value=1.4e-11  Score=92.52  Aligned_cols=167  Identities=16%  Similarity=0.133  Sum_probs=104.3

Q ss_pred             ccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC-----------CCccCCCCCcc---------------eeeEEEE
Q 048709           16 QQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKN-----------EFCFDSKSTIG---------------VEFQTRT   69 (203)
Q Consensus        16 ~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~-----------~~~~~~~~~~~---------------~~~~~~~   69 (203)
                      +.....-+...+...|.+.|.||+|||||+..|...           -++++++.|-+               ...+.+.
T Consensus        39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs  118 (323)
T COG1703          39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS  118 (323)
T ss_pred             HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence            334444344556789999999999999999987431           12233322211               1111111


Q ss_pred             EEE------------------CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC
Q 048709           70 VTI------------------NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD  131 (203)
Q Consensus        70 ~~~------------------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  131 (203)
                      ..-                  +...+.+.|++|.|--...   -....-+|.+++|.-..-.+..+-++.-+..+..   
T Consensus       119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---  192 (323)
T COG1703         119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---  192 (323)
T ss_pred             cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence            111                  1124678899998733222   2345568999999888777777777766666554   


Q ss_pred             CCCcEEEEEeCCCCCcccCCCHHHHHHHHH---------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          132 SSIRIILIGNKSDLVDMWAVSAEDVVEFAE---------DQGLFFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       132 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                           ++|+||.|..+. +....++.....         .|.-|++.+||.+|.|++++++.|.++......
T Consensus       193 -----i~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~  258 (323)
T COG1703         193 -----IIVINKADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE  258 (323)
T ss_pred             -----eeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence                 899999996542 111222222111         233579999999999999999999988765443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.6e-10  Score=89.49  Aligned_cols=84  Identities=18%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC----------------EEEEEEEEeCCCch---
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----------------KIIKAQIWDTAGQE---   88 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~g~~---   88 (203)
                      .+++++||.|++|||||+|+++.......+.|..++++..-...+..                ....+.++|.+|..   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999887666668888887776665522                13468899999832   


Q ss_pred             ----hhhhhhHhhhcCCcEEEEEEeCC
Q 048709           89 ----RYRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        89 ----~~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                          ....-.-..++.+|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                22333445688999999999976

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.31  E-value=3.8e-11  Score=94.78  Aligned_cols=162  Identities=18%  Similarity=0.242  Sum_probs=110.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC--Ccc----------C--CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE--FCF----------D--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      -.+|+++-...-|||||+..|+...  +..          +  ....-+++.-.+...+..+...++++||||+-.|..-
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            4689999999999999999997642  111          0  0112223333333344455678999999999999988


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------HcCC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAE-------DQGL  165 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~  165 (203)
                      .+..+.=+|++++++|+.+..- .+.+-   .+.+....+.+.|+|+||+|.+..+. .-.+++..+..       +.++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrF---VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRF---VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-Cchhh---hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            8888999999999999987321 11111   12223335677789999999987432 11234444433       3567


Q ss_pred             eEEEEecCCC----------CCHHHHHHHHHHHHHHhh
Q 048709          166 FFSEASALNG----------DNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       166 ~~~~~sa~~~----------~~i~~~~~~i~~~~~~~~  193 (203)
                      |++..|++.|          .++.-+|+.|++++....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            8999999877          468889999999887654

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-11  Score=89.11  Aligned_cols=147  Identities=19%  Similarity=0.235  Sum_probs=90.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-----hhHhhhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-----VTSAYYRG  100 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~  100 (203)
                      ..-||+++|.+||||||+=-.++..-.. ....++.+++.......+-|+ ..+.+||++|++.+-.     .....+.+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhee
Confidence            3568999999999999876555532211 122234444555544444443 4589999999885432     33457889


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHH---HHHHhhcCCCCcEEEEEeCCCCCccc--CCCHH----HHHHHHHHcCCeEEEEe
Q 048709          101 ALGAVVVYDITKRQSFDHVARGV---EELRAHADSSIRIILIGNKSDLVDMW--AVSAE----DVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~s  171 (203)
                      ++++++|||++..+-..++..+-   +.+.+. .+...+.+.++|.|+....  +...+    .+.......++.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999876555554333   333333 2667788999999997532  11111    12222223345677777


Q ss_pred             cCCC
Q 048709          172 ALNG  175 (203)
Q Consensus       172 a~~~  175 (203)
                      ..+.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            7654

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.2e-10  Score=87.49  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC----ccCC---CCCcceeeEEEEEEE-------CCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF----CFDS---KSTIGVEFQTRTVTI-------NSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~----~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~D~~g~~~~~   91 (203)
                      +..+++.++|...||||||.++|..-..    +...   .+..+.+.--..+.+       .+...++.++|+||+..  
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--   82 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--   82 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH--
Confidence            4459999999999999999999965321    1111   111111111111111       34557899999999554  


Q ss_pred             hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc--cCCCHH-HHHHHH---HH
Q 048709           92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM--WAVSAE-DVVEFA---ED  162 (203)
Q Consensus        92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~-~~~~~~---~~  162 (203)
                       +.+..+.+   .|..++|+|+.....-+...-++  +....  -...++|+||+|....  +....+ ..++..   ..
T Consensus        83 -LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~  157 (522)
T KOG0461|consen   83 -LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES  157 (522)
T ss_pred             -HHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence             44454444   47789999998642222221111  11111  1236888899886432  111111 112221   12


Q ss_pred             c----CCeEEEEecCCC----CCHHHHHHHHHHHHHHhhc
Q 048709          163 Q----GLFFSEASALNG----DNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       163 ~----~~~~~~~sa~~~----~~i~~~~~~i~~~~~~~~~  194 (203)
                      .    +.|++++|+..|    .++.++.+.+.+.+....+
T Consensus       158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence            2    368999999999    7788777777777766544

>smart00053 DYNc Dynamin, GTPase

Probab=99.23  E-value=2.4e-10  Score=85.16  Aligned_cols=118  Identities=15%  Similarity=0.214  Sum_probs=69.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcce-----------eeEEEEEEECC---------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-----------EFQTRTVTINS---------------------   74 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---------------------   74 (203)
                      ...+|+|+|+.|+||||+++++.+..+.+...-..+.           ..+...+.+.+                     
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4468999999999999999999987532211100000           00011111110                     


Q ss_pred             ------------------EEEEEEEEeCCCchh-------------hhhhhHhhhcC-CcEEEEEEeCCCHHHHHHHHHH
Q 048709           75 ------------------KIIKAQIWDTAGQER-------------YRAVTSAYYRG-ALGAVVVYDITKRQSFDHVARG  122 (203)
Q Consensus        75 ------------------~~~~~~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~  122 (203)
                                        ....+.++|+||...             ...+...|+++ .+++++|+|++..-.-.....+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i  184 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL  184 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence                              014688999999531             12345567774 4588999988653221121122


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709          123 VEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus       123 ~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ...+..   .+.|+++|+||.|..+
T Consensus       185 a~~ld~---~~~rti~ViTK~D~~~  206 (240)
T smart00053      185 AKEVDP---QGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHH---cCCcEEEEEECCCCCC
Confidence            222222   5678999999999876

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.1e-10  Score=94.26  Aligned_cols=152  Identities=24%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--------------------CCc---------cCCCCCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--------------------EFC---------FDSKSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..+.++|+|...+|||||+-+|+..                    +.+         ....+.-|+........++-...
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            4699999999999999999987431                    111         00113334555556666666667


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH---HHHH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFD---HVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      .++|.|+||+..|-...-.-...+|+.++|+|++-.   ..|+   ++++- ..+.+..+ -.-++|++||+|..+..+.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-i~qlivaiNKmD~V~Wsq~  333 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-ISQLIVAINKMDLVSWSQD  333 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-cceEEEEeecccccCccHH
Confidence            899999999888887777778889999999999852   1222   11221 12222221 3348999999999875444


Q ss_pred             CHHHHH----HHH-HHcC-----CeEEEEecCCCCCHHH
Q 048709          152 SAEDVV----EFA-EDQG-----LFFSEASALNGDNVDT  180 (203)
Q Consensus       152 ~~~~~~----~~~-~~~~-----~~~~~~sa~~~~~i~~  180 (203)
                      ..++++    .|+ ...|     +.|++||+..|.|+-.
T Consensus       334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            444443    344 3333     4799999999998653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.22  E-value=1.2e-10  Score=82.36  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEecCCCCCH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASALNGDNV  178 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i  178 (203)
                      .-|+|+|++..+..          -++..+.  ..=++|+||.|+...-..+.+...+-+++  ...+++++|+++|.|+
T Consensus       120 ~~v~VidvteGe~~----------P~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         120 LRVVVIDVTEGEDI----------PRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             eEEEEEECCCCCCC----------cccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            66888888764321          1110010  13489999999987544545555555544  5689999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          179 DTAFFRLLQEI  189 (203)
Q Consensus       179 ~~~~~~i~~~~  189 (203)
                      +++++|+....
T Consensus       190 ~~~~~~i~~~~  200 (202)
T COG0378         190 DEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhhc
Confidence            99999887643

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.21  E-value=4.3e-10  Score=86.69  Aligned_cols=139  Identities=14%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER------   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------   89 (203)
                      .-.++|+++|+.|+|||||+|.|++......          ..++.....+...+.-++..+.++++||||...      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4579999999999999999999998743222          123333444445555578888999999999311      


Q ss_pred             -hh-------hhhHhhh--------------cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           90 -YR-------AVTSAYY--------------RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        90 -~~-------~~~~~~~--------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                       |.       .....|+              ..+|+++|.+..+... +-.++ ..+..+.    ..+-+|.|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI-e~Mk~ls----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI-EAMKRLS----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-HHHHHHh----cccCeeeeeeccccC
Confidence             11       1111122              3568888888876521 11111 2222222    345689999999976


Q ss_pred             cccC--CCHHHHHHHHHHcCCeEEE
Q 048709          147 DMWA--VSAEDVVEFAEDQGLFFSE  169 (203)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~  169 (203)
                      ...+  .-.+.+.+....+.+++|.
T Consensus       176 T~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         176 TDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCceeC
Confidence            4211  2233455556677777774

>cd01900 YchF YchF subfamily

Probab=99.21  E-value=6.4e-11  Score=89.88  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchh------
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQER------   89 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~------   89 (203)
                      |+++|.|+||||||+|+|++........+.++.++....+.+.+..               .++.++|+||...      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999988766555666666666666664432               2589999999432      


Q ss_pred             -hhhhhHhhhcCCcEEEEEEeCC
Q 048709           90 -YRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        90 -~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                       .....-..++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112223467899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.4e-09  Score=84.38  Aligned_cols=143  Identities=15%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccC---------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------h
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD---------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------Y   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~   90 (203)
                      -.+.++++|.+|.|||||+|+|+...+...         ...+.....+...+.-+|..+.++++||||...       |
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            469999999999999999999988754422         112334444444555578888999999999211       1


Q ss_pred             h-------hhhHhhh-------------cCCcEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           91 R-------AVTSAYY-------------RGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        91 ~-------~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .       +....|+             ..+|+++|.+..+.. .+..+. ..+..+.    ..+.+|.|+.|.|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence            1       1112222             267889999987652 111111 1112222    466789999999976532


Q ss_pred             C--CCHHHHHHHHHHcCCeEEEEecCC
Q 048709          150 A--VSAEDVVEFAEDQGLFFSEASALN  174 (203)
Q Consensus       150 ~--~~~~~~~~~~~~~~~~~~~~sa~~  174 (203)
                      +  .-...+.+.+..+.+++|....-.
T Consensus       175 El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  175 ELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHHHHHHHHHHcCcceecCCCCc
Confidence            1  223345555667788777665543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.4e-10  Score=81.08  Aligned_cols=163  Identities=17%  Similarity=0.185  Sum_probs=97.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---hhhHhhhcCCcE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---AVTSAYYRGALG  103 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~d~  103 (203)
                      .+.+|+++|...|||||+.+..+....+.+. -....+.....-.+.+.-+.+.+||.||+-.+-   .-.+..++++.+
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            4466999999999999998877665433221 111111111122233455789999999975432   124567899999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccC-C---------CHHHHHHH-HHHcCCeEEEE
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWA-V---------SAEDVVEF-AEDQGLFFSEA  170 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~-~---------~~~~~~~~-~~~~~~~~~~~  170 (203)
                      +++|+|+.+. ..+.+.++...+.+...  +++.+-+.+.|.|...... +         ..+++... .....+.++.+
T Consensus       105 LifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            9999999873 22333333333333322  7788999999999865311 1         11111111 11223456667


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHh
Q 048709          171 SALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |.. ..+|-+.|..+++++..+
T Consensus       184 SIy-DHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  184 SIY-DHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             eec-chHHHHHHHHHHHHHhhh
Confidence            765 456777888888887653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=1.8e-10  Score=92.49  Aligned_cols=166  Identities=19%  Similarity=0.303  Sum_probs=123.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .-..+|++|||..++|||+|+.+++.+.+.....+.  ......++..++...-+.+.|.+|..     ...|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e--~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE--GGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCc--CccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            345799999999999999999999998887665333  23344566677777778888888722     34577889999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDT  180 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~  180 (203)
                      ||||.+.+..+++.+..+...+..... ..+|.++++++.-..  ..+.+...+..+++.. ..+.+|++.+.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999888766655543333 567888888764332  2234555555555544 457899999999999999


Q ss_pred             HHHHHHHHHHHhhcccc
Q 048709          181 AFFRLLQEIYALSKKEL  197 (203)
Q Consensus       181 ~~~~i~~~~~~~~~~~~  197 (203)
                      +|+.+..++...+++.+
T Consensus       180 vf~~~~~k~i~~~~~qq  196 (749)
T KOG0705|consen  180 VFQEVAQKIVQLRKYQQ  196 (749)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999988766544

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=6.4e-10  Score=87.53  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=105.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      -|+..|.---|||||+.++++...+   +......+.+........++  ....|+|.||.+++-...-.-+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4778899999999999999986543   33344555555544444433  368899999999887777777888999999


Q ss_pred             EEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          107 VYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      |+++++   .++.+.+. .++.+.     ..-.++|+||+|..+...  ...+++.+.......+++.+|+++|.||+++
T Consensus        80 vV~~deGl~~qtgEhL~-iLdllg-----i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L  153 (447)
T COG3276          80 VVAADEGLMAQTGEHLL-ILDLLG-----IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL  153 (447)
T ss_pred             EEeCccCcchhhHHHHH-HHHhcC-----CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHH
Confidence            999975   34444331 112211     122589999999986421  1112233333334467899999999999999


Q ss_pred             HHHHHHHHH
Q 048709          182 FFRLLQEIY  190 (203)
Q Consensus       182 ~~~i~~~~~  190 (203)
                      .+.|.+..-
T Consensus       154 k~~l~~L~~  162 (447)
T COG3276         154 KNELIDLLE  162 (447)
T ss_pred             HHHHHHhhh
Confidence            999998873

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.15  E-value=2.3e-09  Score=78.72  Aligned_cols=155  Identities=24%  Similarity=0.207  Sum_probs=99.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHhhhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-------VTSAYYR   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~   99 (203)
                      ..-+|+++|.|.+|||||+-.++.-.........++.+.-.-.+.+++.  .+++.|.||...-.+       ..-+..+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            3579999999999999999999886655444455555555556666664  468999999433221       2234567


Q ss_pred             CCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcC-----------------------------------------------
Q 048709          100 GALGAVVVYDITKRQSFD-HVARGVEELRAHAD-----------------------------------------------  131 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~-----------------------------------------------  131 (203)
                      .+|.+++|.|++..+... .+...++.+.....                                               
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            889999999998754333 22333333322211                                               


Q ss_pred             ------------------CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          132 ------------------SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       132 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                                        .-++++-|-||+|     +++.+++-.+++....-++  |+.-+.|++.+++.|-+.+.
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHhc
Confidence                              1245555566665     3456667677766665554  66666788877777766553

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1e-09  Score=92.79  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=81.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc-CCC-------------CCcceeeEEEEEEECCE-EEEEEEEeCCCc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFCF-DSK-------------STIGVEFQTRTVTINSK-IIKAQIWDTAGQ   87 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~~~-~~~-------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~   87 (203)
                      .....+|+++|+-.+|||||..+|+..  .... ...             ..-+++.......+... .+.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            456689999999999999999998642  1110 000             01122233333333223 478999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .+|..-....++-+|++++|+|+...-..+.-.-| ....+   .++|.++++||+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa~~---~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQADK---YGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHHhh---cCCCeEEEEECccccc
Confidence            99998888889999999999999874332222223 33233   4899999999999865

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.13  E-value=6.4e-10  Score=89.27  Aligned_cols=113  Identities=17%  Similarity=0.228  Sum_probs=80.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR----------QSFDHVARGVEELRAHAD-SSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  145 (203)
                      ..+.++|++|+...+.-|..++.+++++|||+++++.          ..+.+...++..+..... .+.|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            4679999999999889999999999999999998752          223333445555544433 68999999999997


Q ss_pred             Ccc-----------------c-CCCHHHHHHHHHH------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          146 VDM-----------------W-AVSAEDVVEFAED------------QGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       146 ~~~-----------------~-~~~~~~~~~~~~~------------~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ...                 . ....+.+..|...            ..+.+..|+|.+..++..+|+.+.+.|
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            421                 0 1345666666542            223566789999999999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=3.7e-09  Score=77.13  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------   89 (203)
                      ...++|+|||.+|.|||||+|.|+.......         .+.|......+..+.-++...+++++||||...       
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            3579999999999999999999987544321         112222223333334467778899999999211       


Q ss_pred             -----------hhhh--------hHhhh--cCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           90 -----------YRAV--------TSAYY--RGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        90 -----------~~~~--------~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                                 |...        .+..+  ..++++++.+..+.. ++.-+ ..++..+.+    -+-++.|+-|.|-..
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKADTLT  198 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeeccccc
Confidence                       1111        11112  245677777777642 22222 122233322    334788888999542


Q ss_pred             --ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          148 --MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       148 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                        .+..-.+.+++-...+++.+++-.+.+-..=+..++.-
T Consensus       199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~k  238 (336)
T KOG1547|consen  199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDK  238 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHH
Confidence              12222344555566788888887766554444344333

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2.5e-09  Score=84.11  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh--cCCCc-----------cCC-------CCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFT--KNEFC-----------FDS-------KSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~--~~~~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      .....+|+-.|.+|||||-..|+  ++-+.           ...       ...-|+...+..+.++.....++|.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            34678999999999999999874  22110           000       01123445556666777778899999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED  162 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  162 (203)
                      ++.|..-.-..+..+|.++.|+|+...-.-+. .++++.+..   +++|++-++||.|....  -+.+.+.+..+.
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~  160 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGR--DPLELLDEIEEE  160 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccC--ChHHHHHHHHHH
Confidence            99888766666888999999999987433222 244444333   68999999999998763  233434444333

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.06  E-value=7.3e-10  Score=84.23  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             CcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          134 IRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       134 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      .+-++|+||+|+........+...+..+.  ...+++.+|+++|.|++++++||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            44699999999975221223344444433  45789999999999999999999764

>cd01855 YqeH YqeH

Probab=99.06  E-value=2.1e-09  Score=77.94  Aligned_cols=94  Identities=21%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcC
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQG  164 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  164 (203)
                      +..++..+++.+|++++|+|++++..     .|...+... ..+.|+++|+||+|+... ....+.+..+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence            57788889999999999999987542     111222111 246799999999998653 33344444443     2233


Q ss_pred             C---eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          165 L---FFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       165 ~---~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .   +++.+||++|.|++++++.+.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2   6899999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.03  E-value=1.9e-09  Score=75.69  Aligned_cols=96  Identities=13%  Similarity=0.045  Sum_probs=65.8

Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEE
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSE  169 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  169 (203)
                      ++.+.+..++++|++++|+|++++...... .+...+.   ..+.|+++|+||+|+....  ..+....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKE--VLEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHH--HHHHHHHHHHhCCCcEEE
Confidence            456677788899999999999875432221 1212221   1368999999999986421  112222333445678999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 048709          170 ASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +||+++.|++++++.+.+.+..
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEccccccHHHHHHHHHHHHhh
Confidence            9999999999999999877653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.02  E-value=1.7e-09  Score=81.07  Aligned_cols=139  Identities=22%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC----------C------CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN----------E------FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      ..++|..+|...-|||||..+++.-          .      .+.+  ..-+++..+..+.++-....+-..|+||+..|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeE--k~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEE--KARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchH--hhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            4599999999999999999987541          0      1111  22334444444455444556788999999888


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHc
Q 048709           91 RAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQ  163 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~  163 (203)
                      -...-.-..+.|+.|+|+++.+.   ++-+.+    ....+   -++| +++++||+|+.++.+   .-..++++++..+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y  161 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence            76666667788999999999983   333322    11111   3554 788899999987433   2234677788887


Q ss_pred             CC-----eEEEEecCC
Q 048709          164 GL-----FFSEASALN  174 (203)
Q Consensus       164 ~~-----~~~~~sa~~  174 (203)
                      ++     |++.-||..
T Consensus       162 ~f~gd~~Pii~gSal~  177 (394)
T COG0050         162 GFPGDDTPIIRGSALK  177 (394)
T ss_pred             CCCCCCcceeechhhh
Confidence            75     577777653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=2.4e-09  Score=88.01  Aligned_cols=118  Identities=20%  Similarity=0.257  Sum_probs=82.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-----------------CCcceeeEEEEEEE---CCEEEEEEEEeC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-----------------STIGVEFQTRTVTI---NSKIIKAQIWDT   84 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~l~D~   84 (203)
                      .....+++++|+-++|||+|+..|.....+..+.                 +..++.....++..   .++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            3457899999999999999999997654322111                 11112222222222   466778899999


Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        85 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      ||+..|..-....++.+|++++|+|+.+.-.+..- +.+...   ...+.|+++|+||+|..
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha---iq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA---IQNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH---HhccCcEEEEEehhHHH
Confidence            99998887778889999999999999876544332 222222   22589999999999964

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.99  E-value=1.4e-09  Score=75.02  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=40.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      +++++|.+|+|||||+|+|.+....... ...+.+.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999988764322 3333444455555554   4689999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.98  E-value=1.6e-09  Score=77.05  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=41.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      ...++++++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeCC---CEEEEECcC
Confidence            44589999999999999999999987664333 3344444445554442   578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.97  E-value=2.2e-09  Score=75.39  Aligned_cols=56  Identities=23%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      ..++|+++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            4588999999999999999999987654333 3344444444444332   367999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.95  E-value=5.6e-10  Score=80.96  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=87.8

Q ss_pred             ECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcEEEEE
Q 048709           72 INSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRIILIG  140 (203)
Q Consensus        72 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~  140 (203)
                      ++-..+.+.+.|.+|+..-+.-|-.++.++-.++|++..+.          ...+++...++..+..... .+.++|+.+
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            34445678899999998888888888998888888777654          3344444555566655555 778999999


Q ss_pred             eCCCCCcc----------------cCCCHHHHHHHHHHcC----------CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          141 NKSDLVDM----------------WAVSAEDVVEFAEDQG----------LFFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       141 nK~D~~~~----------------~~~~~~~~~~~~~~~~----------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      ||.|+.+.                .+...+.+++|....-          +.-..+.|.+..||+.+|..+.+.+....-
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            99998642                2344455566654321          123446788899999999999888877654


Q ss_pred             ccc
Q 048709          195 KEL  197 (203)
Q Consensus       195 ~~~  197 (203)
                      +.+
T Consensus       354 kE~  356 (359)
T KOG0085|consen  354 KEY  356 (359)
T ss_pred             Hhh
Confidence            443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.94  E-value=5.4e-09  Score=82.28  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEE
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                      .+.+..+.++|.+++|+|+.++. ....+.+|+..+..   .++|+++|+||+|+....+  .+...+....++++++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence            34455689999999999998765 44455666654432   5789999999999965211  123334445678899999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~  188 (203)
                      ||+++.|++++++.+...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999888654

>cd01855 YqeH YqeH

Probab=98.93  E-value=9.7e-10  Score=79.67  Aligned_cols=74  Identities=20%  Similarity=0.316  Sum_probs=47.3

Q ss_pred             CCCCccccccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-------CCCCCcceeeEEEEEEECCEEEE
Q 048709            6 SGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-------DSKSTIGVEFQTRTVTINSKIIK   78 (203)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   78 (203)
                      .+.|++++...+....+    ...+++++|.+|+|||||+|+|.+.....       ...+..+++.....+.++.   .
T Consensus       109 ~~~gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~  181 (190)
T cd01855         109 KGWGVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---G  181 (190)
T ss_pred             CCCCHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---C
Confidence            34445555555544443    34689999999999999999999754311       1112334444455555543   4


Q ss_pred             EEEEeCCC
Q 048709           79 AQIWDTAG   86 (203)
Q Consensus        79 ~~l~D~~g   86 (203)
                      +.++||||
T Consensus       182 ~~~~DtPG  189 (190)
T cd01855         182 KKLYDTPG  189 (190)
T ss_pred             CEEEeCcC
Confidence            68999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.90  E-value=2.2e-09  Score=75.27  Aligned_cols=75  Identities=25%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             CCCccccccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709            7 GDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      +.|.++....+.+..+. .....+++++|.+|+||||++|++.+...... .++.+.+.....+..++   .+.+|||||
T Consensus        81 ~~gi~~L~~~l~~~~~~-~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859          81 RLGTKILRRTIKELAKI-DGKEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             cccHHHHHHHHHHHHhh-cCCCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            34455555555544442 23568899999999999999999997654332 24544443333333333   578999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.90  E-value=9.1e-09  Score=79.23  Aligned_cols=88  Identities=19%  Similarity=0.089  Sum_probs=67.4

Q ss_pred             HhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           95 SAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ...+.++|.+++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+....  .......+....+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            44588999999999999887 77788787776554   468999999999996531  1122233345578899999999


Q ss_pred             CCCCHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQ  187 (203)
Q Consensus       174 ~~~~i~~~~~~i~~  187 (203)
                      ++.|+++++..+..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999998887654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.89  E-value=7.4e-09  Score=79.06  Aligned_cols=86  Identities=16%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchh-
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQER-   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~-   89 (203)
                      .+.+++++||.|++|||||+|+|+.....+...|..++++....+.+...               ...++++|++|... 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            36799999999999999999999999988888888888888887766322               35789999998422 


Q ss_pred             ------hhhhhHhhhcCCcEEEEEEeCC
Q 048709           90 ------YRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        90 ------~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                            ...-.-..++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                  2223345678899999999875

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.88  E-value=2.1e-09  Score=82.40  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=42.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      ...++++++|.||+|||||+|+|.+....... ...+.+.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            34689999999999999999999987644332 3334444445555543   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.88  E-value=6.4e-09  Score=77.43  Aligned_cols=155  Identities=15%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRA   92 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   92 (203)
                      +.....+++++|.+++|||+|+|.++..+..... .+..+.+   +.+..-..+-.+.+.|.||          ...+..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence            3456699999999999999999999876543222 1233322   3333322334678999999          233445


Q ss_pred             hhHhhhcCCc---EEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-----------CCHHHH
Q 048709           93 VTSAYYRGAL---GAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-----------VSAEDV  156 (203)
Q Consensus        93 ~~~~~~~~~d---~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~  156 (203)
                      +...|+..-+   -+++++|++.+-  .-.....|      ....++|..+|+||+|......           ...+.+
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~------~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l  282 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAW------LGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL  282 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHH------HhhcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence            5555654433   245556665421  11111222      2226899999999999753210           111222


Q ss_pred             HHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          157 VEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       157 ~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      .+-......|++.+|+.++.|+++++-.|.+
T Consensus       283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cccceeccCCceeeecccccCceeeeeehhh
Confidence            2222233457788999999999987765554

>TIGR00092 GTP-binding protein YchF

Probab=98.87  E-value=1.2e-08  Score=80.20  Aligned_cols=83  Identities=17%  Similarity=0.007  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEE---------------EEEEEEeCCCchh---
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKI---------------IKAQIWDTAGQER---   89 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~---   89 (203)
                      ++++++|.|++|||||+++|++... ...+.|..+..+....+.+.+..               ..+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999999887 55555666666666666664431               3678999999432   


Q ss_pred             ----hhhhhHhhhcCCcEEEEEEeCC
Q 048709           90 ----YRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        90 ----~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                          .....-..++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445688999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.86  E-value=7.6e-09  Score=76.42  Aligned_cols=122  Identities=14%  Similarity=0.154  Sum_probs=78.3

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH-------HHHHHHH---HHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR-------QSFDHVA---RGVEELRAHAD-SSIRIILIGNKSD  144 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~---~~~~~~~~~~~-~~~p~ivv~nK~D  144 (203)
                      .+.|+++|.+|+...+.-|-.++.++.++|||+..++.       .+-..++   .++..+.+... ..+.+|+.+||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            46789999999998888899999999999999988751       1112222   23333333222 4577999999999


Q ss_pred             CCcc------------------------------cCCCHHHHHHHHH--------H-----cCCeEEEEecCCCCCHHHH
Q 048709          145 LVDM------------------------------WAVSAEDVVEFAE--------D-----QGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       145 ~~~~------------------------------~~~~~~~~~~~~~--------~-----~~~~~~~~sa~~~~~i~~~  181 (203)
                      +...                              +....-..+-|.+        .     +.+.+.++.|.+-.+|+.+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            8521                              0000001111111        1     1234556778899999999


Q ss_pred             HHHHHHHHHHhhcccc
Q 048709          182 FFRLLQEIYALSKKEL  197 (203)
Q Consensus       182 ~~~i~~~~~~~~~~~~  197 (203)
                      |+...+.|..+.-+..
T Consensus       361 FnDcrdiIqr~hlrqy  376 (379)
T KOG0099|consen  361 FNDCRDIIQRMHLRQY  376 (379)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9998888877654443

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=5.2e-08  Score=79.26  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             ccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh
Q 048709           18 DKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAY   97 (203)
Q Consensus        18 ~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   97 (203)
                      ..+.|...+.++-++|+|+||+||||||++|..+-.........+     -...+.++..++++.++|.  ..+.+ -..
T Consensus        59 vdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~m-iDv  130 (1077)
T COG5192          59 VDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQM-IDV  130 (1077)
T ss_pred             ccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHH-HhH
Confidence            345566677889999999999999999999876432111111111     1112456778899999993  33333 345


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCCCHHHHHHHH------H-HcCCeEEE
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAVSAEDVVEFA------E-DQGLFFSE  169 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~------~-~~~~~~~~  169 (203)
                      .+-+|.+++++|.+-.-.++.+ .+++.+..   .+.| ++.|+|+.|+.... .....++.-+      . ..|+.+|.
T Consensus       131 aKIaDLVlLlIdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFy  205 (1077)
T COG5192         131 AKIADLVLLLIDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFY  205 (1077)
T ss_pred             HHhhheeEEEeccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEE
Confidence            6778999999999864333332 34444443   3455 77889999997632 1222222211      1 23677888


Q ss_pred             EecCC
Q 048709          170 ASALN  174 (203)
Q Consensus       170 ~sa~~  174 (203)
                      +|...
T Consensus       206 lsgV~  210 (1077)
T COG5192         206 LSGVE  210 (1077)
T ss_pred             ecccc
Confidence            88654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.83  E-value=2.3e-08  Score=78.66  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      ..++|.+++|++.....++..+..|+..+..   .++|+++|+||+|+..... ....+..+.....+++++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888888888888765432   4689999999999975321 11223334445678899999999999


Q ss_pred             CHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQE  188 (203)
Q Consensus       177 ~i~~~~~~i~~~  188 (203)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999888653

>PRK00098 GTPase RsgA; Reviewed

Probab=98.83  E-value=1.7e-08  Score=78.09  Aligned_cols=86  Identities=23%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             hhcCCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG  175 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  175 (203)
                      ...++|.+++|+|+.++..... +..|+..+..   .++|+++|+||+|+.+... ..++..+.....+++++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999988754433 4566655443   4789999999999964211 223344555667889999999999


Q ss_pred             CCHHHHHHHHH
Q 048709          176 DNVDTAFFRLL  186 (203)
Q Consensus       176 ~~i~~~~~~i~  186 (203)
                      .|++++++.+.
T Consensus       153 ~gi~~L~~~l~  163 (298)
T PRK00098        153 EGLDELKPLLA  163 (298)
T ss_pred             ccHHHHHhhcc
Confidence            99999988764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.82  E-value=1.7e-08  Score=77.74  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=42.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      ...++++++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            35689999999999999999999987754332 3444444445555443   4789999995

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.82  E-value=3.2e-08  Score=78.53  Aligned_cols=95  Identities=22%  Similarity=0.288  Sum_probs=69.6

Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHH----HHHH
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVE----FAED  162 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~  162 (203)
                      .+.|..+...+...++++++|+|+.+...     .|...+.+.. .+.|+++|+||+|+... ....+.+.+    ++..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            56788888888999999999999977532     2333333332 25789999999998653 344445544    3556


Q ss_pred             cCC---eEEEEecCCCCCHHHHHHHHHHH
Q 048709          163 QGL---FFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       163 ~~~---~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      .++   .++.+||++|.|++++++.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            666   48999999999999999988654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.3e-07  Score=78.24  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=84.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcce-----------------------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGV-----------------------------------------   63 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~-----------------------------------------   63 (203)
                      ....||++.|..++||||++|+++..++.++.. +++..                                         
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            356999999999999999999997655433321 11110                                         


Q ss_pred             -eeEEEEEEECCE-----EEEEEEEeCCCc---hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCC
Q 048709           64 -EFQTRTVTINSK-----IIKAQIWDTAGQ---ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSI  134 (203)
Q Consensus        64 -~~~~~~~~~~~~-----~~~~~l~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  134 (203)
                       ......+..+..     .-.+.++|.||.   ....+-...+...+|++|+|..+.+.-+... .+++.....   .+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence             000011111111     015678999994   3445556678899999999999987544333 233333332   233


Q ss_pred             cEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--------eEEEEecC
Q 048709          135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--------FFSEASAL  173 (203)
Q Consensus       135 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~sa~  173 (203)
                      -+.++.||+|....++.-.++++........        .++.+|++
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence            4667777899865434344555554333322        47788854

>cd01856 YlqF YlqF

Probab=98.80  E-value=1.8e-08  Score=71.81  Aligned_cols=58  Identities=22%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      +..++++++|.+|+|||||+|+|.+....... +..+.+.....+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34589999999999999999999987764222 333344444445444   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.80  E-value=1.8e-07  Score=73.94  Aligned_cols=159  Identities=19%  Similarity=0.216  Sum_probs=91.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC-----------------CCccCC----CCCcceeeE---EEEEEE-CCEEEEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN-----------------EFCFDS----KSTIGVEFQ---TRTVTI-NSKIIKAQI   81 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~-----------------~~~~~~----~~~~~~~~~---~~~~~~-~~~~~~~~l   81 (203)
                      -.+=|+|||+..+|||||+++|...                 +.+.+.    .-|+...+.   ...+.+ ++..+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            4588999999999999999998442                 111111    011111111   122333 567789999


Q ss_pred             EeCCCc-------------------hhhhhhh---Hh-------hh--cCCcEEEEEEeCCC----HHHHHHH-HHHHHH
Q 048709           82 WDTAGQ-------------------ERYRAVT---SA-------YY--RGALGAVVVYDITK----RQSFDHV-ARGVEE  125 (203)
Q Consensus        82 ~D~~g~-------------------~~~~~~~---~~-------~~--~~~d~~i~v~d~~~----~~s~~~~-~~~~~~  125 (203)
                      +||.|.                   ..|..-.   .+       .+  +..-++++.-|.+=    ++++..+ .+.++.
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999981                   0011000   00       01  22335566666542    4555554 344555


Q ss_pred             HHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          126 LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       126 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +..   -++|+++++|-.+-..  ....+...++..+++++++.+++.. ..-+++...+-+.+++
T Consensus       176 Lk~---igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyE  235 (492)
T PF09547_consen  176 LKE---IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYE  235 (492)
T ss_pred             HHH---hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhc
Confidence            555   4789999999988655  3345566777889999999998853 2334444444444444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.79  E-value=8.9e-09  Score=72.17  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      ....+++++|.+|+|||||+|.|.+..... ...+..+.  ....+.++   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~--~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTT--SQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCccc--ceEEEEec---CCEEEEECCC
Confidence            356899999999999999999999866422 22222222  22333333   2478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.73  E-value=2.6e-08  Score=77.81  Aligned_cols=59  Identities=22%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      ..++++|+|.|++|||||||+|.+....... +.+|.+.....+..+..   +.++||||.-.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGii~  189 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGIIP  189 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCcCC
Confidence            4588999999999999999999998874433 55577777777776653   67999999543

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=9.6e-08  Score=67.07  Aligned_cols=88  Identities=22%  Similarity=0.154  Sum_probs=56.5

Q ss_pred             hhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC
Q 048709           97 YYRGALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN  174 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  174 (203)
                      .+..+|++++|+|++++..  ...+..+   +.. ...+.|+++|+||+|+..... ....+..+...+...++.+||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHH---HHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccc
Confidence            4678999999999998632  2222222   222 234589999999999964221 11112222222223357899999


Q ss_pred             CCCHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEI  189 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~  189 (203)
                      +.|++++++.+.+.+
T Consensus        80 ~~~~~~L~~~l~~~~   94 (157)
T cd01858          80 PFGKGSLIQLLRQFS   94 (157)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999998887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=1.4e-07  Score=73.16  Aligned_cols=167  Identities=21%  Similarity=0.284  Sum_probs=97.3

Q ss_pred             ccCCCCCCC-eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC----------------CC-------cceeeEEEEEEEC
Q 048709           18 DKMIPDKID-YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK----------------ST-------IGVEFQTRTVTIN   73 (203)
Q Consensus        18 ~~~~~~~~~-~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~----------------~~-------~~~~~~~~~~~~~   73 (203)
                      .++.|.+.. -.++++|+|.-.+|||||+-.|+.++.+....                .|       .+.+..-..+.+.
T Consensus       156 VRKvPd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~  235 (591)
T KOG1143|consen  156 VRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYA  235 (591)
T ss_pred             hhhCCCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchh
Confidence            344454433 37999999999999999999887664432211                11       1111111111111


Q ss_pred             ----------CEEEEEEEEeCCCchhhhhhhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 048709           74 ----------SKIIKAQIWDTAGQERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN  141 (203)
Q Consensus        74 ----------~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n  141 (203)
                                ...--+.++|.+|+..|....-.-+.  -.|..++|+++.....+..- +-+..+..   .++|+.++++
T Consensus       236 ~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~A---L~iPfFvlvt  311 (591)
T KOG1143|consen  236 QNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIAA---LNIPFFVLVT  311 (591)
T ss_pred             hcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHHH---hCCCeEEEEE
Confidence                      11224789999998888654332222  23668889998875444332 22222222   4899999999


Q ss_pred             CCCCCccc------------------------CCCHHHHHHHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          142 KSDLVDMW------------------------AVSAEDVVEFAED----QGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       142 K~D~~~~~------------------------~~~~~~~~~~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      |+|+....                        -.+.+++...+++    .-.|+|.+|+..|.|++ ++..++..+
T Consensus       312 K~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~-ll~~fLn~L  386 (591)
T KOG1143|consen  312 KMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCL  386 (591)
T ss_pred             eeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh-HHHHHHhhc
Confidence            99997531                        0112222222222    22589999999999988 555555544

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=2.2e-07  Score=72.06  Aligned_cols=120  Identities=17%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEE------CCE----------------------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTI------NSK----------------------   75 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~------~~~----------------------   75 (203)
                      -+.+.=|+++|.=..||||||+.|+..+++... .+..++++....+.-      +|.                      
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            445677999999999999999999998876321 122223332222211      111                      


Q ss_pred             -----------EEEEEEEeCCCc-----------hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCC
Q 048709           76 -----------IIKAQIWDTAGQ-----------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS  133 (203)
Q Consensus        76 -----------~~~~~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  133 (203)
                                 .-++.++||||.           ..|.....=|...+|.++++||+-.-+--.+....+..+.   +..
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc
Confidence                       025789999992           2344556668899999999999865322222233333333   344


Q ss_pred             CcEEEEEeCCCCCc
Q 048709          134 IRIILIGNKSDLVD  147 (203)
Q Consensus       134 ~p~ivv~nK~D~~~  147 (203)
                      -.+-||+||.|..+
T Consensus       212 dkiRVVLNKADqVd  225 (532)
T KOG1954|consen  212 DKIRVVLNKADQVD  225 (532)
T ss_pred             ceeEEEeccccccC
Confidence            55788999999765

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.65  E-value=3.1e-08  Score=69.10  Aligned_cols=60  Identities=18%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      -.++++|++|+|||||+|+|.+....      .......-++....-+..++.   ..++||||...+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            46899999999999999999986321      111111111112233344332   3589999965443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.65  E-value=2.1e-07  Score=84.03  Aligned_cols=114  Identities=21%  Similarity=0.261  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCC----C--CCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS----K--STIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVT   94 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~   94 (203)
                      .=.+|+|++||||||+++.- +.+++-..    .  ...+.+..+ .+-+.+   +.+++||+|..        .....|
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-DWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-ceEecC---CEEEEcCCCccccCCCcccccHHHH
Confidence            45799999999999999876 44443211    0  111111111 111222   45699999921        112223


Q ss_pred             Hhhh---------cCCcEEEEEEeCCC-----HHH----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           95 SAYY---------RGALGAVVVYDITK-----RQS----FDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        95 ~~~~---------~~~d~~i~v~d~~~-----~~s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ..++         +-.+++|+++|+.+     ++.    -..++..+.++....+...|+.+++||+|+..
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            3332         34699999999875     221    23345667777777888999999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.64  E-value=5.6e-07  Score=70.17  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=97.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCC--------------cceeeEEEEEEECC-E--------------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST--------------IGVEFQTRTVTINS-K--------------   75 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~--------------   75 (203)
                      .+..+.+++.|....|||||+-.|..+..+...-.+              .+.+.....+-+++ +              
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            455699999999999999999988765443221110              11111112221211 1              


Q ss_pred             ------EEEEEEEeCCCchhhhhh--hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           76 ------IIKAQIWDTAGQERYRAV--TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        76 ------~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                            ..-+.|.||.|++.|-..  ...+=...|-.++++.+++..+--    .-+.+.-......|+++++||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~----tkEHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM----TKEHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh----hhHhhhhhhhhcCCEEEEEEecccCc
Confidence                  124678999999887542  233446789999999998854321    11222223335899999999999975


Q ss_pred             ccC--CCHHHHHHHHH----------------------H---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          148 MWA--VSAEDVVEFAE----------------------D---QGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       148 ~~~--~~~~~~~~~~~----------------------~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +..  -..+++.+.++                      +   .-+|++.+|+-+|.|++ ++..+...+..
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~  339 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPK  339 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCc
Confidence            311  11222222222                      1   12589999999999998 55555544433

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=2.6e-08  Score=75.19  Aligned_cols=162  Identities=19%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC---CccCCCCCcceeeEE---EEEEE--------------------------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE---FCFDSKSTIGVEFQT---RTVTI--------------------------   72 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~---~~~~~--------------------------   72 (203)
                      +.-+++|.-+|...-||||+++++.+-.   |..+...-.+...-.   +.+.+                          
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            5568999999999999999999885531   111110100000000   00000                          


Q ss_pred             ---CC---EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709           73 ---NS---KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNK  142 (203)
Q Consensus        73 ---~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  142 (203)
                         .+   --..+.+.|+||++..-...-.-..-.|++++++..+.    |++-+.+... +. .+    =..++++-||
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-ei-M~----LkhiiilQNK  188 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EI-MK----LKHIIILQNK  188 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HH-hh----hceEEEEech
Confidence               10   01357899999987655433333344588888888876    3444444211 11 11    1247999999


Q ss_pred             CCCCcccC--CCHHHHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          143 SDLVDMWA--VSAEDVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       143 ~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|+....+  ...+++..|...   .+.|++++||.-++|++-+.++|++++.-.
T Consensus       189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            99975322  234556666654   467999999999999999999999988654

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.63  E-value=9e-07  Score=65.78  Aligned_cols=86  Identities=19%  Similarity=0.067  Sum_probs=52.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCC-CcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhh------hhHh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKS-TIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRA------VTSA   96 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~------~~~~   96 (203)
                      +..-|+|+|++++|||+|+|.|++.  .+...... ..+........+.. +....+.++||+|......      ....
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4577999999999999999999998  55533321 11111222222221 2345789999999543221      1122


Q ss_pred             hhcC--CcEEEEEEeCCC
Q 048709           97 YYRG--ALGAVVVYDITK  112 (203)
Q Consensus        97 ~~~~--~d~~i~v~d~~~  112 (203)
                      .+..  ++.+|+..+...
T Consensus        86 ~l~~llss~~i~n~~~~~  103 (224)
T cd01851          86 ALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHhCEEEEeccCcc
Confidence            2333  778888877764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.62  E-value=2.1e-07  Score=65.15  Aligned_cols=84  Identities=17%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+....+. .+.+..+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            68999999988754432  22221 1112257899999999998642110 11112233334567899999999999999


Q ss_pred             HHHHHHHH
Q 048709          182 FFRLLQEI  189 (203)
Q Consensus       182 ~~~i~~~~  189 (203)
                      ++.+.+..
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.61  E-value=6.4e-07  Score=70.15  Aligned_cols=95  Identities=16%  Similarity=-0.004  Sum_probs=58.1

Q ss_pred             EEEEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      +.+.|+||+|...... +.   ..+  ....|.+++|+|+.... ..+.+..+    ....   .+--+|+||.|...  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f----~~~~---~~~giIlTKlD~~~--  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF----NEAV---GIDGVILTKVDADA--  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH----HhcC---CCCEEEEeeecCCC--
Confidence            4689999999643211 11   111  23568889999987643 22222222    2111   12478899999854  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                        ..-.+...+...+.|+..++  +|.+++++..+
T Consensus       294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence              23356666667789988887  78888776544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.59  E-value=4.7e-07  Score=70.58  Aligned_cols=96  Identities=19%  Similarity=0.103  Sum_probs=58.7

Q ss_pred             EEEEEEEeCCCchhhhhh----hHhh--------hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709           76 IIKAQIWDTAGQERYRAV----TSAY--------YRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNK  142 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK  142 (203)
                      .+.+.++||||.......    ...+        -...+..++|+|++... .+.++..+    ....   -+.-+|+||
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f----~~~~---~~~giIlTK  268 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF----HEAV---GLTGIILTK  268 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH----HhhC---CCCEEEEEC
Confidence            457899999995432211    1111        12457789999998632 33332222    1111   234788999


Q ss_pred             CCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       143 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      .|...    ..-.+...+...++|+..++  +|++++++-.+
T Consensus       269 lD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        269 LDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             CCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence            99543    24456777778899998888  77888766443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.57  E-value=6.2e-07  Score=63.01  Aligned_cols=63  Identities=14%  Similarity=0.150  Sum_probs=37.2

Q ss_pred             EEEEEEeCCCchhhhhhhHhh--------hcCCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQERYRAVTSAY--------YRGALGAVVVYDITKRQSFD-HVARGVEELRAHADSSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~  145 (203)
                      .+..++|++|..........+        .-..+.+++++|+.+..... ....+..++...      =++++||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            466889999965443333321        23468899999987533221 222233333332      2789999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.56  E-value=1.2e-07  Score=74.77  Aligned_cols=23  Identities=39%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      ++|+|++|+|||||+|+|.+...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~  197 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVE  197 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccc
Confidence            89999999999999999997543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.56  E-value=1.4e-05  Score=55.25  Aligned_cols=146  Identities=17%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCC-Cc------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA-GQ------------------   87 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~------------------   87 (203)
                      ..+||.+.|+|||||||++..+...-....   ..-..+.+.++.-++..+-|.+.|.. |.                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            569999999999999999998864321111   11133455666667777777787776 31                  


Q ss_pred             ---hhhh----hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH
Q 048709           88 ---ERYR----AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA  160 (203)
Q Consensus        88 ---~~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  160 (203)
                         +.+.    ......+..+|++|  +|--.+-.+. .+.+...+......+.|++.++.+.+. ++      -+.++-
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-~P------~v~~ik  150 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-HP------LVQRIK  150 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-Ch------HHHHhh
Confidence               0111    11122234455544  4433221111 123444444445567888888877654 11      223333


Q ss_pred             HHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          161 EDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       161 ~~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ...++.++    .+..|-+.+++.+...+
T Consensus       151 ~~~~v~v~----lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         151 KLGGVYVF----LTPENRNRILNEILSVL  175 (179)
T ss_pred             hcCCEEEE----EccchhhHHHHHHHHHh
Confidence            33334443    44445556777766654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.55  E-value=1.9e-06  Score=65.87  Aligned_cols=96  Identities=16%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             EEEEEEEeCCCchhhhhhhH----h---hh-----cCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 048709           76 IIKAQIWDTAGQERYRAVTS----A---YY-----RGALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNK  142 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  142 (203)
                      .+.+.++||||....+...-    .   ..     ...|.+++|+|++.. +.+..+.    .+.+..   -+.-+|+||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhC---CCCEEEEEc
Confidence            36789999999654322211    1   11     237889999999753 2333322    222211   135788999


Q ss_pred             CCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       143 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      .|...    ..-.+.......+.|+..++  +|.+++++-.+
T Consensus       227 lDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       227 LDGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             cCCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            99754    34456666777789988888  77777765443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.55  E-value=2.9e-07  Score=63.42  Aligned_cols=76  Identities=24%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709           95 SAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      ...+..+|++++|+|+.++.+..  .+..++..   . ..++|+++|+||+|+....  ...+..++....+..++++||
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~--~~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEE--QRKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHH--HHHHHHHHHHhcCCeEEEEEe
Confidence            34578999999999998875433  23333332   1 2468999999999986532  223445556666788999999


Q ss_pred             CCCC
Q 048709          173 LNGD  176 (203)
Q Consensus       173 ~~~~  176 (203)
                      +++.
T Consensus        80 ~~~~   83 (141)
T cd01857          80 LKEN   83 (141)
T ss_pred             cCCC
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.1e-07  Score=74.88  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccC-CCCC---cc--eeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFD-SKST---IG--VEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ++|+|.+|+|||||+|+|.+...... ..+.   -|  ++....-+.+++.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            79999999999999999997643211 1111   11  1112222333322   2489999966544

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.54  E-value=1.1e-07  Score=76.42  Aligned_cols=57  Identities=25%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE   88 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   88 (203)
                      .+.|++||.||+||||+||+|.+.+....+ .|.|-+....++.+..   .+.|+||||..
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCcc
Confidence            699999999999999999999998764443 5666555666665543   46799999943

>cd01856 YlqF YlqF

Probab=98.52  E-value=6e-07  Score=63.95  Aligned_cols=89  Identities=17%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ....+.++|.+++|+|++++...... .....+     .+.|+++|+||+|+.+..  ......++....+..++.+||+
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~--~~~~~~~~~~~~~~~vi~iSa~   84 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPK--KTKKWLKYFESKGEKVLFVNAK   84 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChH--HHHHHHHHHHhcCCeEEEEECC
Confidence            45568899999999999875432111 111111     246899999999986421  1112223333445678999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~  190 (203)
                      ++.|++++.+.+.+.+.
T Consensus        85 ~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          85 SGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CcccHHHHHHHHHHHHH
Confidence            99999999999888754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.49  E-value=5.6e-07  Score=66.68  Aligned_cols=84  Identities=21%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYRGA  101 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~  101 (203)
                      -++.++|.|.+||||++..|.+...+......++.....-.+.+++  -++++.|.||...-.       ...-+..+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999988765543333333333333333433  567899999943221       1223456778


Q ss_pred             cEEEEEEeCCCHH
Q 048709          102 LGAVVVYDITKRQ  114 (203)
Q Consensus       102 d~~i~v~d~~~~~  114 (203)
                      +.+++|.|+..|-
T Consensus       138 nli~~vld~~kp~  150 (358)
T KOG1487|consen  138 NLIFIVLDVLKPL  150 (358)
T ss_pred             cEEEEEeeccCcc
Confidence            8999999987543

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.4e-07  Score=72.88  Aligned_cols=128  Identities=19%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             ccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCccCC--------CCCcceeeEEEEEEECCEEEEE
Q 048709           16 QQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKN--------EFCFDS--------KSTIGVEFQTRTVTINSKIIKA   79 (203)
Q Consensus        16 ~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~   79 (203)
                      +..+..++....-.+|.++..-.+||||...+++..        .++...        ...-+++.+...++++.++.++
T Consensus        25 slhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~ri  104 (753)
T KOG0464|consen   25 SLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRI  104 (753)
T ss_pred             hccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceE
Confidence            334444555556678999999999999999987542        221111        1223466677778888888999


Q ss_pred             EEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           80 QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        80 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      +++||||+..|+--.+.+++--|+++.|||++..-.-+.+-.|.+    ....++|..+.+||+|...
T Consensus       105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            999999999998888889999999999999987544444444433    2335789999999999764

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=1.9e-06  Score=66.31  Aligned_cols=139  Identities=22%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC----------CC------ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN----------EF------CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      ..++|.-+|...-|||||-.+++.-          ++      +++  ..-+++.....+.++-....+--.||||+..|
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            3599999999999999999987531          11      111  12234444444445444556677899998888


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC---CCHHHHHHHHHHcC
Q 048709           91 RAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA---VSAEDVVEFAEDQG  164 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~  164 (203)
                      -...-.-....|+.|+|+.++|.   ++-+.+    ....+..  -..+++.+||.|+.++.+   .-.-|+++++..++
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g  204 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG  204 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence            76665566788999999999984   333322    2222221  133788899999985322   22335677777776


Q ss_pred             -----CeEEEEecC
Q 048709          165 -----LFFSEASAL  173 (203)
Q Consensus       165 -----~~~~~~sa~  173 (203)
                           +|++.=||+
T Consensus       205 f~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  205 FDGDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCCCeeecchh
Confidence                 478876664

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.47  E-value=3.3e-06  Score=68.03  Aligned_cols=134  Identities=12%  Similarity=0.060  Sum_probs=71.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh------cCCCc-cCCCC--------------CcceeeEEEEEEEC-------------
Q 048709           28 VFKVVVIGDSAVGKSQILSRFT------KNEFC-FDSKS--------------TIGVEFQTRTVTIN-------------   73 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~------~~~~~-~~~~~--------------~~~~~~~~~~~~~~-------------   73 (203)
                      +.-|+++|++||||||++..|.      +.+.. ...++              ..+..+......-+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999884      22211 00100              01111110000000             


Q ss_pred             CEEEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           74 SKIIKAQIWDTAGQERYRA-VTS---AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        74 ~~~~~~~l~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ...+.+.|+||+|...... +..   .+  ....+-+++|+|+.-.+.-....   ..+...   -.+.-+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC
Confidence            0246889999999543321 111   11  23467899999987543322221   222221   234678899999753


Q ss_pred             ccCCCHHHHHHHHHHcCCeEEEEe
Q 048709          148 MWAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                          ..-.+.......+.|+..++
T Consensus       254 ----rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 ----KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             ----CccHHhhhHHHHCCCeEEEc
Confidence                22335555666677766554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=8e-07  Score=74.50  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=79.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc------------cC--CCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC------------FD--SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE   88 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   88 (203)
                      .......+|+++-...-|||||..+|....--            ..  ...+-+++.....+..-...+.++++|+||+-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            34556789999999999999999998653211            00  11222333333333333345678999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709           89 RYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDL  145 (203)
Q Consensus        89 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  145 (203)
                      .|.+.......-+|++++++|+...   ++..-+++    ...   .+...++|+||+|.
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~---~~~~~~lvinkidr  136 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWI---EGLKPILVINKIDR  136 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHH---ccCceEEEEehhhh
Confidence            9998888889999999999999874   23222221    111   34557899999994

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=1.2e-06  Score=67.19  Aligned_cols=90  Identities=17%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ....+..+|++++|+|+..+.+...  ..+....    .+.|+++|+||+|+.+..  ..+...++....+.+++.+||+
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~iSa~   86 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPA--VTKQWLKYFEEKGIKALAINAK   86 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHH--HHHHHHHHHHHcCCeEEEEECC
Confidence            4556889999999999987644322  1111111    257899999999986421  1122222333456688999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~  191 (203)
                      ++.|++++.+.+.+.+.+
T Consensus        87 ~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        87 KGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CcccHHHHHHHHHHHHHH
Confidence            999999999888887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=2.7e-07  Score=73.45  Aligned_cols=57  Identities=23%  Similarity=0.377  Sum_probs=37.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC----ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF----CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE   88 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   88 (203)
                      .++.|+|.+|+|||||+|+|.....    .....+..+++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            5799999999999999999985431    1111133344444455555432   3699999953

>PRK13796 GTPase YqeH; Provisional

Probab=98.44  E-value=2.3e-06  Score=68.11  Aligned_cols=94  Identities=21%  Similarity=0.258  Sum_probs=62.0

Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HHHc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AEDQ  163 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~  163 (203)
                      +.|.......-...+.+++|+|+.+...     .|...+.+.. .+.|+++|+||+|+... ....+.+.++    +...
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            3455555444333448999999987431     2333333332 26789999999999642 3344444444    4455


Q ss_pred             CC---eEEEEecCCCCCHHHHHHHHHHH
Q 048709          164 GL---FFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       164 ~~---~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999988664

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=6.7e-06  Score=60.80  Aligned_cols=161  Identities=20%  Similarity=0.208  Sum_probs=101.9

Q ss_pred             eeEEEEEcCCCC--cHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           28 VFKVVVIGDSAV--GKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        28 ~~~i~vvG~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|-+|+  ||.+++.+|...++.....+...+.++.+++.-......+.++=.+-.+.+--......+-.-+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            357899999998  999999999988887666555555566555533222223344333332222222223344556899


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------------------------------------
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------------------------------------  148 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------------------------------  148 (203)
                      +|||.+....+..+..|+.......  ---.+.++||+|....                                     
T Consensus        84 mvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999999999988988876533221  1124677999996421                                     


Q ss_pred             -----c--CCCHHHHHHHHHHcCCeEEEEecCC------------CCCHHHHHHHHHHHHH
Q 048709          149 -----W--AVSAEDVVEFAEDQGLFFSEASALN------------GDNVDTAFFRLLQEIY  190 (203)
Q Consensus       149 -----~--~~~~~~~~~~~~~~~~~~~~~sa~~------------~~~i~~~~~~i~~~~~  190 (203)
                           .  -.......+++..+++.+++.++..            ..|+..+|..+-..+.
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                 0  0122334667778888999887732            2578888877765553

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=2.2e-06  Score=64.17  Aligned_cols=118  Identities=20%  Similarity=0.349  Sum_probs=70.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC----CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hhhhh--
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK----STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ERYRA--   92 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~~~~--   92 (203)
                      ...++|+-||..|.|||||++.|++-.+.....    +.......++.+.-.+..+++.++||.|.       ++|..  
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            356999999999999999999999977653321    22223333333334577788999999982       12211  


Q ss_pred             -----hhHhh-------------hc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           93 -----VTSAY-------------YR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        93 -----~~~~~-------------~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                           ..+.|             ++  ..+++++.+..+. .++..+...   ..+....++.+|.++-|.|-..
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLv---tmk~LdskVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLV---TMKKLDSKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHH---HHHHHhhhhhhHHHHHHhhhhh
Confidence                 11222             23  4467788887775 233333211   1122223455777788888543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.38  E-value=8.4e-07  Score=70.54  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=38.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc----cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC----FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      .+++++|.+|+|||||+|+|++....    ....+..+++.....+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            58999999999999999999975321    11112333444444455432   246999999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.38  E-value=6.8e-06  Score=59.77  Aligned_cols=85  Identities=18%  Similarity=0.058  Sum_probs=50.3

Q ss_pred             EEEEEEeCCCchhhhhh----hHhhh--cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      +.+.++||+|.......    ...++  ...+-+++|++++... ....+...    .....   +--+++||.|-..  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~~---~~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAFG---IDGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHSS---TCEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhccc---CceEEEEeecCCC--
Confidence            46899999995433211    11111  2567789999988653 32222222    22211   2257799999754  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                        ..-.+...+...+.|+-.++.
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it~  175 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYITT  175 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEES
T ss_pred             --CcccceeHHHHhCCCeEEEEC
Confidence              345688888889998777663

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.38  E-value=1.3e-06  Score=62.88  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             EEEEEeCCCchhhh-h--hhHh---hhcC---CcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           78 KAQIWDTAGQERYR-A--VTSA---YYRG---ALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        78 ~~~l~D~~g~~~~~-~--~~~~---~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .+.++|+||+.... +  ..+.   .+..   .-+++++++..= -++...+..-+..+.....-.+|.|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            56799999975432 1  1111   1221   223566666542 12333333333444444445789999999999976


Q ss_pred             ccCCCHHHHHHH
Q 048709          148 MWAVSAEDVVEF  159 (203)
Q Consensus       148 ~~~~~~~~~~~~  159 (203)
                      .  .+.+++.+|
T Consensus       179 ~--~~k~~l~~F  188 (273)
T KOG1534|consen  179 D--KNKKELERF  188 (273)
T ss_pred             h--hhHHHHHHh
Confidence            3  333444443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.38  E-value=2.3e-06  Score=66.01  Aligned_cols=91  Identities=20%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ....+..+|++++|+|+..+.+.+.  .++....    .+.|+++|+||+|+.+..  ..+...++....+.+++.+|++
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~--~~~~~~~~~~~~~~~vi~vSa~   89 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE--VTKKWIEYFEEQGIKALAINAK   89 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH--HHHHHHHHHHHcCCeEEEEECC
Confidence            4556889999999999987644222  1122211    257899999999986421  1122333334446788999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++.|++++++.+.+.+...
T Consensus        90 ~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         90 KGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             CcccHHHHHHHHHHHHHHH
Confidence            9999999999888877553

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.38  E-value=4.7e-05  Score=62.33  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             EEEEEeCCCc-------------hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709           78 KAQIWDTAGQ-------------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus        78 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                      +.++.|.||.             +....+..+|..+.+++|+|+--.+-+.-..  ..-..+......+...|+|+||+|
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERS--nVTDLVsq~DP~GrRTIfVLTKVD  490 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERS--IVTDLVSQMDPHGRRTIFVLTKVD  490 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhh--hHHHHHHhcCCCCCeeEEEEeecc
Confidence            4678999992             2334566788999999999984333222111  111222333335677899999999


Q ss_pred             CCcccCCCHHHHHHHHHHcCC-----eEEEEecCCC
Q 048709          145 LVDMWAVSAEDVVEFAEDQGL-----FFSEASALNG  175 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~sa~~~  175 (203)
                      +++..-.+++.+++++...-+     .||.+-.-.|
T Consensus       491 lAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  491 LAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             hhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            998767788888888765433     2555544333

>PRK01889 GTPase RsgA; Reviewed

Probab=98.38  E-value=2e-06  Score=68.23  Aligned_cols=84  Identities=17%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      ..++|.+++|+++..+-....+.+++..+..   .+++.++|+||+|+.+......+.+..+  ..+++++.+|++++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            5789999999999754444455555554444   4677789999999975311011222222  4578899999999999


Q ss_pred             HHHHHHHHH
Q 048709          178 VDTAFFRLL  186 (203)
Q Consensus       178 i~~~~~~i~  186 (203)
                      ++++..++.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            998887764

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.36  E-value=9.6e-07  Score=66.51  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -.++++|.+|+|||||+|+|.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            368999999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.36  E-value=7e-07  Score=68.02  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=36.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC------CCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN------EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      -.+++|.+|+|||||+|+|...      +++......--++....-+.+++.+   .++||||...+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            5789999999999999999763      2222221111122333444554333   489999965543

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.30  E-value=1.3e-05  Score=62.56  Aligned_cols=88  Identities=20%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCCHHHHHH-HHHH-HHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSFDH-VARG-VEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      +...++++.|.-........++.        ..|+++-|+|+.+-..... +... ..++...      =++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            45678888886555444444332        3377999999987443222 2222 2333332      28999999998


Q ss_pred             cccCCCHHHHHHHHHH--cCCeEEEEec
Q 048709          147 DMWAVSAEDVVEFAED--QGLFFSEASA  172 (203)
Q Consensus       147 ~~~~~~~~~~~~~~~~--~~~~~~~~sa  172 (203)
                      +..  ..+.+.+..+.  ..++++.++.
T Consensus       159 ~~~--~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAE--ELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHH--HHHHHHHHHHHhCCCCeEEEccc
Confidence            753  24444555444  4467888777

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.29  E-value=4.2e-05  Score=54.75  Aligned_cols=86  Identities=26%  Similarity=0.274  Sum_probs=60.4

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                      ..+.+.++|||+....  .....+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+||+|...   ...+
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE  161 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence            4568899999965322  23455788999999998874 3555555665555443   567889999999753   2356


Q ss_pred             HHHHHHHHcCCeEEE
Q 048709          155 DVVEFAEDQGLFFSE  169 (203)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (203)
                      ++.+++...+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            778888888888764

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.28  E-value=5.6e-06  Score=57.51  Aligned_cols=58  Identities=19%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                      .+.+.++||+|....   ...++..+|-+++|...+-.+.+.-++.  ..+..      .-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence            467899999985422   2347888999999998874444433321  22222      1378899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.28  E-value=8.1e-06  Score=58.17  Aligned_cols=84  Identities=14%  Similarity=0.007  Sum_probs=47.8

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           76 IIKAQIWDTAGQERYRA----VTSAY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      ...+.++|++|...+..    ....+  ....+.+++|+++......   ......+.+..  + ..-+|+||.|...  
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~--  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDA--  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCC--
Confidence            34578899999642211    11111  1348899999998754322   12233333222  2 3567789999765  


Q ss_pred             CCCHHHHHHHHHHcCCeEEE
Q 048709          150 AVSAEDVVEFAEDQGLFFSE  169 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~  169 (203)
                        ....+...+...++|+..
T Consensus       154 --~~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         154 --RGGAALSIRAVTGKPIKF  171 (173)
T ss_pred             --CcchhhhhHHHHCcCeEe
Confidence              233445567777777654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.24  E-value=2.3e-05  Score=62.24  Aligned_cols=141  Identities=12%  Similarity=0.089  Sum_probs=74.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCC--CcceeeE------------------EEEEEE---------CCEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKS--TIGVEFQ------------------TRTVTI---------NSKII   77 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~--~~~~~~~------------------~~~~~~---------~~~~~   77 (203)
                      .-.++++|++|+||||++..|...-... ....  ..+.+.+                  .....-         .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4578899999999999999886531100 0000  0000000                  000000         01234


Q ss_pred             EEEEEeCCCchhhhhhhHh---hhc---CCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcc
Q 048709           78 KAQIWDTAGQERYRAVTSA---YYR---GALGAVVVYDITK-RQSFDHVARGVEELRAHADS--SIRIILIGNKSDLVDM  148 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~---~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  148 (203)
                      .+.++||+|....+.....   .+.   ...-.++|++++. .+....+...+.........  ..+--+|+||.|-.. 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            7899999996543322111   122   2334588888876 34444333222222211100  012467889999754 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEec
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                         ..-.+..++...+.|+..++.
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt~  316 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVST  316 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEec
Confidence               455677888888888776653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=2.4e-05  Score=64.46  Aligned_cols=133  Identities=13%  Similarity=0.208  Sum_probs=72.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--------CCc-cCCCC--------------CcceeeEEEEEEE---------CCE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN--------EFC-FDSKS--------------TIGVEFQTRTVTI---------NSK   75 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~--------~~~-~~~~~--------------~~~~~~~~~~~~~---------~~~   75 (203)
                      .-.|+|+|++|+||||++..|...        .+. ...+.              ..+..+  ....-         .-.
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v--~~a~d~~~L~~aL~~l~  427 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV--HEADSAESLLDLLERLR  427 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee--EecCcHHHHHHHHHHhc
Confidence            468999999999999999887542        111 00000              000000  00000         012


Q ss_pred             EEEEEEEeCCCchhhhhhhHh---hhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           76 IIKAQIWDTAGQERYRAVTSA---YYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      .+.+.|+||+|..........   .+.  .....++|++.+.  +...+...+..+..    ..+.-+|+||.|...   
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~---  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG---  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence            467899999995433221110   011  1234566777664  22223333333322    235679999999744   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 048709          151 VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ..-.+.......+.++..++.
T Consensus       499 -~lG~aLsv~~~~~LPI~yvt~  519 (559)
T PRK12727        499 -RFGSALSVVVDHQMPITWVTD  519 (559)
T ss_pred             -chhHHHHHHHHhCCCEEEEeC
Confidence             456788888888888776663

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.22  E-value=3.1e-06  Score=65.25  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=36.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCC-CC-----CcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KS-----TIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      -.++++|++|+|||||+|.|.+....... .+     ...++.....+...+.   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            57999999999999999999986533211 11     1112222233333322   258999997554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=3.1e-05  Score=61.64  Aligned_cols=86  Identities=8%  Similarity=-0.002  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCchhhhhh----hHhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRAV----TSAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      +.+.|+||+|.......    ...++  ...+.+++|+|++-..  ..+...+..+..    -.+--+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence            57899999995432211    11222  2346788888876422  112222233222    112367899999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 048709          151 VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ..-.+...+...++|+..++.
T Consensus       392 -k~G~iLni~~~~~lPIsyit~  412 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMTD  412 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEeC
Confidence             345677888888888776653

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.18  E-value=5.5e-06  Score=66.69  Aligned_cols=139  Identities=15%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcc-eeeEEEE---------------EE---E-----------CCEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRT---------------VT---I-----------NSKI   76 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~~~---------------~~---~-----------~~~~   76 (203)
                      ..-.|+++|++|+||||++..|.+...........+ ......+               +.   .           .-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            346899999999999999998765311000000000 0000000               00   0           0012


Q ss_pred             EEEEEEeCCCchhhhh----hhHhhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRA----VTSAYY--RGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      ..+.++||+|......    ....+.  ....-.++|++++. .....++.   .....    --+--+|+||.|-..  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~--  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAA--  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCC--
Confidence            4678999999543221    112221  12345678888874 44433332   22221    112367899999754  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                        ..-.+..++...+.|+..++  +|.+|
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence              45567788888888877665  34444

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.18  E-value=4.5e-06  Score=67.66  Aligned_cols=86  Identities=15%  Similarity=0.024  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCchhhhhh-h---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRAV-T---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~-~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      ..+.++||+|....... .   ..  .....|.+++|+|++....   .......+....   ...-+|+||.|...   
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l---~i~gvIlTKlD~~a---  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV---GIGGIIITKLDGTA---  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence            37899999995443211 1   11  1335788999999876421   112222222211   12367899999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 048709          151 VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ..-.+.......+.|+..++.
T Consensus       247 -~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 -KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             -cccHHHHHHHHHCcCEEEEec
Confidence             234567777778888766654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.18  E-value=3.6e-06  Score=65.27  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -.++++|++|+|||||+|+|.+...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            3689999999999999999987643

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.18  E-value=1.3e-05  Score=62.59  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc----------------cCCCCCcceeeEEEEEE-------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC----------------FDSKSTIGVEFQTRTVT-------------------   71 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~-------------------   71 (203)
                      -.++|+|+|...+|||||+-.|+.++.+                .+.-.|..+.....-+.                   
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            4799999999999999999876543221                11212222111111111                   


Q ss_pred             --ECCEEEEEEEEeCCCchhhhhhhHh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           72 --INSKIIKAQIWDTAGQERYRAVTSA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        72 --~~~~~~~~~l~D~~g~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                        +++..--+.|+|.+|++.|-...-.  .=+-.|...+++-++..-- --.++-+..   .....+|+.+|+||+|+..
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgL---ALaL~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGL---ALALHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhh---hhhhcCcEEEEEEeeccCc
Confidence              1112234789999999887643211  1123344555555543110 000111111   1124788999999999754


Q ss_pred             cc--CCCHHHHHHHHHH--------------------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          148 MW--AVSAEDVVEFAED--------------------------QGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       148 ~~--~~~~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ..  +.+...+..+.+.                          .-+|+|.+|-.+|.|++ ++.-.++.+
T Consensus       288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence            21  0111112222222                          22578999999999988 544444443

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.17  E-value=4.5e-05  Score=59.64  Aligned_cols=85  Identities=9%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhc--------CCcEEEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYR--------GALGAVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ....+++|.|......+...++.        ..++++.|+|+.+...... ......++...      =++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence            45678899997665555554432        2377999999976332211 11112223322      288999999876


Q ss_pred             ccCCCHHHHHHHHHH--cCCeEEEEe
Q 048709          148 MWAVSAEDVVEFAED--QGLFFSEAS  171 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~--~~~~~~~~s  171 (203)
                      .    .+.+.+..+.  ..++++.++
T Consensus       165 ~----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 E----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             H----HHHHHHHHHHhCCCCEEEEec
Confidence            3    2455555543  345666554

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=7.3e-06  Score=73.04  Aligned_cols=114  Identities=21%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCc--cCCC--CCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFC--FDSK--STIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVTSAY   97 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~   97 (203)
                      =-+|+|++|+||||++..- +.+++  ....  ...+..+..+..-+.   -.-+++||.|..        .-...|..+
T Consensus       127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccc---cceEEEcCCcceecccCcchhhHHHHHHH
Confidence            3589999999999998642 22221  1110  011111111111122   245799999821        111223222


Q ss_pred             ---------hcCCcEEEEEEeCCC-----HH----HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           98 ---------YRGALGAVVVYDITK-----RQ----SFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        98 ---------~~~~d~~i~v~d~~~-----~~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                               .+-.+++|+.+|+.+     +.    ....++.-+.++.....-..|+++++||.|+..
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                     245699999999875     11    122244446666666778899999999999865

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=6.2e-06  Score=67.83  Aligned_cols=117  Identities=16%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC---C--CccCC-----------CCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN---E--FCFDS-----------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~---~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      ....+|.+.-.-.|||||+-++++..   .  +....           ...-+++.+.....+......++++||||+..
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            34578899999999999999987531   1  10000           01122333333344444577899999999988


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      |..-.+..++--|++++|+++...-.-+...-| ..+.+   -++|.+..+||+|..
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRM  169 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhc
Confidence            887677778888999988888764322222233 33333   378999999999974

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.12  E-value=2.2e-06  Score=67.13  Aligned_cols=58  Identities=24%  Similarity=0.440  Sum_probs=46.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      .+-++++|+|.|++||||+||+|..+...... ++.|.+...+.+..+.   .+.|.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            45699999999999999999999998875444 6667777777777664   5679999993

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.12  E-value=5.7e-05  Score=59.94  Aligned_cols=134  Identities=16%  Similarity=0.212  Sum_probs=74.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcc-eeeEEEEE-------------------EE----------CCEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTV-------------------TI----------NSKII   77 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~-~~~~~~~~-------------------~~----------~~~~~   77 (203)
                      .--|++||++|+||||-+-.|..+-.........+ ++..++++                   ..          .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            57899999999999999987754322000001110 11111110                   00          00135


Q ss_pred             EEEEEeCCCchhhhhh----hHhhhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           78 KAQIWDTAGQERYRAV----TSAYYRGA--LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      .++|+||.|...++..    ...++..+  .-+.+|++++..  .++++..+..+....    .--+++||.|-..    
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~----  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT----  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC----
Confidence            7899999996655432    23444443  345677777653  333444444433322    1257799999643    


Q ss_pred             CHHHHHHHHHHcCCeEEEEe
Q 048709          152 SAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~s  171 (203)
                      ..-.+.......+.|+-.++
T Consensus       353 s~G~~~s~~~e~~~PV~YvT  372 (407)
T COG1419         353 SLGNLFSLMYETRLPVSYVT  372 (407)
T ss_pred             chhHHHHHHHHhCCCeEEEe
Confidence            45667777777777765554

>PRK10867 signal recognition particle protein; Provisional

Probab=98.10  E-value=7.1e-05  Score=60.74  Aligned_cols=87  Identities=15%  Similarity=0.028  Sum_probs=49.1

Q ss_pred             EEEEEEEeCCCchhhhh-hhH---hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           76 IIKAQIWDTAGQERYRA-VTS---AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .+.+.|+||+|....+. ...   .+  .-..+.+++|+|+...+.   +......+....  + ..-+|+||.|...  
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~--  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDA--  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence            35789999999542211 111   11  125677899999876432   222222222211  1 2367789999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                        ..-.+.......++|+..+..
T Consensus       255 --rgG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              123467777778888776654

>TIGR00959 ffh signal recognition particle protein

Probab=98.09  E-value=1.8e-05  Score=64.09  Aligned_cols=87  Identities=14%  Similarity=0.030  Sum_probs=50.7

Q ss_pred             EEEEEEEeCCCchhhhh-hhH---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           76 IIKAQIWDTAGQERYRA-VTS---A--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .+.+.++||+|...... ...   .  ..-..+.+++|+|+...+.   .......+.....   ..-+|+||.|...  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~---~~~~a~~f~~~v~---i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD---AVNTAKTFNERLG---LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH---HHHHHHHHHhhCC---CCEEEEeCccCcc--
Confidence            35689999999533211 111   1  1235678899999875432   2222233332221   2467799999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                        ..-.+...+...++|+..+..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              223477777788888777654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.06  E-value=1.9e-05  Score=57.99  Aligned_cols=63  Identities=30%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeE
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFF  167 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
                      ...+++|.+|+|+|.+. .++...++. ..+....+ -.++.+|+||+|-.      ...+...+...+..+
T Consensus       151 g~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e~------e~~~~~~~~~~~~~v  213 (255)
T COG3640         151 GTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDEE------EELLRELAEELGLEV  213 (255)
T ss_pred             ccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccch------hHHHHhhhhccCCeE
Confidence            34678999999999984 444444332 22222221 26799999999953      233444455555433

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.06  E-value=3.8e-05  Score=58.75  Aligned_cols=91  Identities=21%  Similarity=0.176  Sum_probs=64.2

Q ss_pred             HhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           95 SAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      +.-..+.|-+++|+++.+|+ +...+.+++-....   .++..++++||+|+.+......++........+++++.+|++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence            33445567777777777764 55556555544443   466678889999998754333345666778899999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQE  188 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~  188 (203)
                      ++.+++++...+...
T Consensus       151 ~~~~~~~l~~~l~~~  165 (301)
T COG1162         151 NGDGLEELAELLAGK  165 (301)
T ss_pred             CcccHHHHHHHhcCC
Confidence            999999888776544

>PRK13695 putative NTPase; Provisional

Probab=98.05  E-value=0.00015  Score=51.69  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+++|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.03  E-value=0.0001  Score=58.43  Aligned_cols=86  Identities=15%  Similarity=0.048  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCchhhhh----hhHhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRA----VTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      +.+.|+||+|......    -...+..  ..+.+++|.++..  ...++...+....    .-.+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCC---
Confidence            5789999999643221    1122222  3356677777643  2222322222211    1123467899999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 048709          151 VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ..-.+...+...+.|+..++.
T Consensus       357 -~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEec
Confidence             455678888888888777664

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.03  E-value=0.00014  Score=59.19  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCchhhh----hhhHhhhc---CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           77 IKAQIWDTAGQERYR----AVTSAYYR---GALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      ..+.|+||+|.....    .....++.   ...-+++|++++-. ..+..+   +..+...   + +--+|+||.|-.. 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~~~---~-~~~vI~TKlDet~-  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFSRL---P-LDGLIFTKLDETS-  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhCCC---C-CCEEEEecccccc-
Confidence            578999999964332    12223333   22356777887643 333332   2222211   1 2358899999754 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEec
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                         ..-.+..++...++|+..++.
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit~  392 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLTN  392 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEeC
Confidence               345688888889998776663

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=1.5e-05  Score=63.97  Aligned_cols=134  Identities=17%  Similarity=0.219  Sum_probs=71.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC-------Cc-cCCC--------------CCcceeeEEEE-E-----EECCEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE-------FC-FDSK--------------STIGVEFQTRT-V-----TINSKIIKA   79 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~-------~~-~~~~--------------~~~~~~~~~~~-~-----~~~~~~~~~   79 (203)
                      ..-++++|++||||||++..|...-       .. ...+              ...+....... .     ........+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3568999999999999999886421       00 0000              00011111000 0     001124577


Q ss_pred             EEEeCCCchhhhh----hhHhhhc-----CCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           80 QIWDTAGQERYRA----VTSAYYR-----GALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        80 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .++||+|......    -+..++.     ...-.++|+|++... ....+..   ....    --+--+|+||.|-..  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~---~f~~----~~~~glIlTKLDEt~--  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK---AYES----LNYRRILLTKLDEAD--  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH---HhcC----CCCCEEEEEcccCCC--
Confidence            9999999542211    1122222     123578888887643 3333222   2211    112367899999754  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEec
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                        ..-.+...+...+.|+..++.
T Consensus       374 --~~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        374 --FLGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             --CccHHHHHHHHHCCCEEEEec
Confidence              344577778888888766654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.99  E-value=3.8e-05  Score=52.73  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=60.4

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC
Q 048709           33 VIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK  112 (203)
Q Consensus        33 vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~  112 (203)
                      .-|.+|+|||++--.+...-. ....++.-.+.....   ....+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            456789999998765532110 000011111111000   0111678999999743  3334567889999999999874


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709          113 RQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus       113 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                       .++..+...++.+.... ...++.+|+|+++..
T Consensus        79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence             44444444445544332 345678999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.99  E-value=6.6e-05  Score=48.71  Aligned_cols=82  Identities=15%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             EEEEc-CCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           31 VVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        31 i~vvG-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      |+|.| ..|+||||+...+...-.. ...++       ..+..+.. +.+.++|+|+.....  ....+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            56777 5799999998776432211 11111       11112211 678999999864332  3367788999999998


Q ss_pred             CCCHHHHHHHHHHHH
Q 048709          110 ITKRQSFDHVARGVE  124 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~  124 (203)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            76 445555555554

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.98  E-value=4.2e-05  Score=54.23  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT-AGQ---------------------   87 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~---------------------   87 (203)
                      +|.+.|++|+||||+++.+...-... ..+.  ..+.+..+.-++...-|.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987532111 1011  3344444445555555666666 331                     


Q ss_pred             -hhhhhh----hHhhhcCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCcccCCCHHHHHHHH
Q 048709           88 -ERYRAV----TSAYYRGALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKS-DLVDMWAVSAEDVVEFA  160 (203)
Q Consensus        88 -~~~~~~----~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~  160 (203)
                       +.+...    ....+..+|  ++|+|=-.+ +..  ...|.+.+......+.|++.++-+. +.        ..+.++.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence             111110    111123444  666664221 110  1234444444444678888888666 32        1355566


Q ss_pred             HHcCCeEEEEecCCCCCH
Q 048709          161 EDQGLFFSEASALNGDNV  178 (203)
Q Consensus       161 ~~~~~~~~~~sa~~~~~i  178 (203)
                      ...++.++.++..+.+.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            677888998877665554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.95  E-value=1.1e-05  Score=57.92  Aligned_cols=80  Identities=21%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             EEEEEEeCCCchhhhhhh---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           77 IKAQIWDTAGQERYRAVT---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      ....++++.|......+.   ..  ..-..+.++.|+|+.+......+...+.......     =++++||+|+.+.. .
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-Q  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-h
Confidence            466778888854444430   01  1234578999999977543344433332222221     28899999998743 2


Q ss_pred             CHHHHHHHHHH
Q 048709          152 SAEDVVEFAED  162 (203)
Q Consensus       152 ~~~~~~~~~~~  162 (203)
                      ..+.+.+..+.
T Consensus       159 ~i~~~~~~ir~  169 (178)
T PF02492_consen  159 KIERVREMIRE  169 (178)
T ss_dssp             -HHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            22455555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.94  E-value=8.6e-05  Score=48.48  Aligned_cols=103  Identities=17%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             EEEE-cCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           31 VVVI-GDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        31 i~vv-G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      |+++ +..|+||||+...|...-.......+.-.+.....      .-.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence            3444 45889999987766432111101111111111110      016899999985433  23456788999999887


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 048709          110 ITKRQSFDHVARGVEELRAHADS-SIRIILIGNK  142 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK  142 (203)
                      .+. .+...+..+++.+...... ...+.+|+|+
T Consensus        74 ~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            764 5566666666666655433 4456677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.91  E-value=0.0003  Score=53.62  Aligned_cols=85  Identities=8%  Similarity=-0.000  Sum_probs=50.2

Q ss_pred             EEEEEEEeCCCchhhhh-hhH---hhh--cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           76 IIKAQIWDTAGQERYRA-VTS---AYY--RGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~-~~~---~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      .+.+.++||+|....+. ...   .++  ...+-+++|+|++. ....   ...+..+..    -.+--+|+||.|-.. 
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~----~~~~~~I~TKlDet~-  225 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM---IEIITNFKD----IHIDGIVFTKFDETA-  225 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCC----CCCCEEEEEeecCCC-
Confidence            35789999999653221 111   122  23456889999864 3222   222222222    123467899999754 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEe
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                         ..-.+...+...+.|+..++
T Consensus       226 ---~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 ---SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             ---CccHHHHHHHHHCcCEEEEe
Confidence               34567777888888877665

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.90  E-value=0.00018  Score=59.09  Aligned_cols=89  Identities=19%  Similarity=0.175  Sum_probs=50.0

Q ss_pred             EEEEEEeCCCchhhhhh---hHhhhcCC---cEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRAV---TSAYYRGA---LGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~---~~~~~~~~---d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      ..+.++||+|.......   ....+...   .-.++|+|++. ...+.++...+.       .....-+|+||.|-..  
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~-------~~~~~g~IlTKlDet~--  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR-------GPGLAGCILTKLDEAA--  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc-------cCCCCEEEEeCCCCcc--
Confidence            35789999994332211   11122221   22678888864 333332222211       1223467799999744  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          150 AVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                        ..-.+..++...++|+..++  +|.+|
T Consensus       406 --~~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        406 --SLGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             --cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence              45567888888898877665  45555

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.90  E-value=1.8e-05  Score=60.34  Aligned_cols=62  Identities=21%  Similarity=0.350  Sum_probs=39.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc----cCCCCCcceeeEEEE-EEECCEEEEEEEEeCCCc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC----FDSKSTIGVEFQTRT-VTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~   87 (203)
                      .+..+++.|+|.||+|||||+|++......    ....+..|++..+.. +.+.... .+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            456799999999999999999987543221    122233344444433 3333222 4789999993

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00012  Score=63.05  Aligned_cols=140  Identities=12%  Similarity=0.099  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccC-CCC--CcceeeE----------------EEEEEE-----------CCEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFD-SKS--TIGVEFQ----------------TRTVTI-----------NSKIIK   78 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~-~~~--~~~~~~~----------------~~~~~~-----------~~~~~~   78 (203)
                      --|+++|+.|+||||++..|.+.-.... ...  ..+.+.+                ......           .-....
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            4689999999999999998865321100 000  0000000                000000           011346


Q ss_pred             EEEEeCCCchhhhh-hh---Hhh--hcCCcEEEEEEeCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           79 AQIWDTAGQERYRA-VT---SAY--YRGALGAVVVYDITK-RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        79 ~~l~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      ++|+||+|....+. +.   ...  ....+-.++|+|++. .+.+.++...+...   ... -+--+|+||.|-..    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~~-~i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AGE-DVDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---ccC-CCCEEEEeccCCCC----
Confidence            89999999433221 11   111  123345788888875 33444333222221   100 13367899999754    


Q ss_pred             CHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          152 SAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      ..-.+..+....++|+..++  +|.+|
T Consensus       338 ~~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            34567778888888877666  35555

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.83  E-value=0.00024  Score=45.02  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-hHhhhcCCcEEEEEEe
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYD  109 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d  109 (203)
                      +++.|..|+||||+...+...-.....          ....++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999887553221111          111222    6789999985432221 1455678889999988


Q ss_pred             CCCH
Q 048709          110 ITKR  113 (203)
Q Consensus       110 ~~~~  113 (203)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7753

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.81  E-value=2e-05  Score=61.96  Aligned_cols=84  Identities=21%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--hhhHhhhcCCcE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--AVTSAYYRGALG  103 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~~~~~~~~~~d~  103 (203)
                      -..+.|+++|.|++||||+||.|-..++.... |..|.+.....++.   ...+.|+||||.....  +-....+   .+
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---kG  377 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---KG  377 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---hc
Confidence            34699999999999999999999998876554 44443322222222   1256799999943222  2222232   35


Q ss_pred             EEEEEeCCCHHHH
Q 048709          104 AVVVYDITKRQSF  116 (203)
Q Consensus       104 ~i~v~d~~~~~s~  116 (203)
                      ++-|-.+.+++.+
T Consensus       378 vVRVenv~~pe~y  390 (572)
T KOG2423|consen  378 VVRVENVKNPEDY  390 (572)
T ss_pred             eeeeeecCCHHHH
Confidence            6777777776543

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00024  Score=56.91  Aligned_cols=91  Identities=12%  Similarity=0.047  Sum_probs=52.8

Q ss_pred             EEEEEEEeCCCchhhhh----hhHhhhcCC--c-EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           76 IIKAQIWDTAGQERYRA----VTSAYYRGA--L-GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      .+.+.++||+|....+.    -...++...  + -.++|+|++...  ..+...+......    -+--+|+||.|-.. 
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~-  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT-  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence            35789999999543221    112233322  3 578899988642  2233333332211    13467899999754 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                         ..-.+..++...+.|+..++  +|.+|
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence               45567778888888876655  35555

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=2.4e-05  Score=61.60  Aligned_cols=156  Identities=22%  Similarity=0.193  Sum_probs=89.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--------------CccC-----C----------CCCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE--------------FCFD-----S----------KSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~--------------~~~~-----~----------~~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..+++.|+|...+||||+-..+....              ....     |          .+.-+.+...-+..+.-...
T Consensus        78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~  157 (501)
T KOG0459|consen   78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK  157 (501)
T ss_pred             CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence            46999999999999999887663310              0000     0          00111111112222222345


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHH--HHHhhcCCCCcEEEEEeCCCCCcc-c-C
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKR---QSFDHVARGVE--ELRAHADSSIRIILIGNKSDLVDM-W-A  150 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~--~~~~~~~~~~p~ivv~nK~D~~~~-~-~  150 (203)
                      ++.+.|+||+..|-...-.-..++|+.++|+++...   ..|+.--+...  .+.+.. .-...|+++||+|.+.. + .
T Consensus       158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCccCcch
Confidence            789999999888776555556788888999988531   12222111111  112211 23457899999997642 1 1


Q ss_pred             CCH----HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 048709          151 VSA----EDVVEFAEDQG------LFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       151 ~~~----~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~  183 (203)
                      .-+    +.+..|+...+      ..++++|..+|.++.+...
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            112    23344444333      4589999999999887553

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.80  E-value=2.6e-05  Score=57.22  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=38.6

Q ss_pred             EEEEEEeCCCchhhh----hhh--HhhhcCCcEEEEEEeC------CCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709           77 IKAQIWDTAGQERYR----AVT--SAYYRGALGAVVVYDI------TKRQSFDHVARGVEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~----~~~--~~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                      -.+.++|+|||.++-    .++  -.++...|.=+.++..      ++|..|-.  .++-.+.....-..|-+=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence            357899999975431    111  1223344443333333      34555433  344444444445778899999999


Q ss_pred             CCc
Q 048709          145 LVD  147 (203)
Q Consensus       145 ~~~  147 (203)
                      +..
T Consensus       175 l~~  177 (290)
T KOG1533|consen  175 LLK  177 (290)
T ss_pred             HHH
Confidence            864

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.79  E-value=0.00043  Score=54.77  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhh-------cCCcEEEEEEeCCCHHH--H-------H-------------HHHHH-HHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYY-------RGALGAVVVYDITKRQS--F-------D-------------HVARG-VEEL  126 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~~-~~~~  126 (203)
                      ....++++.|......+...+.       -..|+++.|+|+.+...  +       .             .+..+ ..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4567889999666555554431       13478999999975311  0       0             01111 2222


Q ss_pred             HhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cC--CeEEEEecCCCCCHHHHHH
Q 048709          127 RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QG--LFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       127 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~--~~~~~~sa~~~~~i~~~~~  183 (203)
                      ...      =++++||+|+.+..  ..+.+.+..+. ..  .++++++ ........++.
T Consensus       173 ~~A------D~IvlnK~Dl~~~~--~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 ACA------DLVILNKADLLDAA--GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HhC------CEEEEeccccCCHH--HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            222      38899999988632  23445555544 22  3566654 23344444443

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.71  E-value=3.1e-05  Score=51.62  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

...

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.70  E-value=0.00027  Score=40.15  Aligned_cols=47  Identities=17%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709           97 YYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                      .-+-.++++|++|++...  +.++-..++..+.... .+.|+++|+||+|
T Consensus        10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            345568899999999843  4444455666666655 4789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=6.4e-05  Score=59.05  Aligned_cols=50  Identities=18%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             EEEEEEEEeCCCchhhh-hhhHhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHH
Q 048709           75 KIIKAQIWDTAGQERYR-AVTSAY-----YRGALGAVVVYDITKRQSFDHVARGVE  124 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~  124 (203)
                      .++.+.|.||+|..... .+.+..     .-..|-+|+|.|++-.++-+.....+.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk  237 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK  237 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence            45789999999953322 222221     235688999999987665444333333

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.69  E-value=0.0032  Score=44.28  Aligned_cols=140  Identities=11%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEE-eCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW-DTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+.-.|++||..+.++..|..++...+..          +.          +++++- -.|-.......    =...|.
T Consensus        12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~~~l----RprIDl   67 (176)
T PF11111_consen   12 ELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSENNNL----RPRIDL   67 (176)
T ss_pred             CcceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccccCC----CceeEE
Confidence            345789999999999999999999862210          01          111111 11111111111    224699


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|++|.....++...+.-+..+....-.+. +.++.+-....+...+..+++.+++..+..|++.+.-....+...+-+
T Consensus        68 IVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq  146 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ  146 (176)
T ss_pred             EEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence            9999999999998888776666544333332 456666666666668899999999999999999999888877776666


Q ss_pred             HHHHHH
Q 048709          184 RLLQEI  189 (203)
Q Consensus       184 ~i~~~~  189 (203)
                      .+++.+
T Consensus       147 RLL~~l  152 (176)
T PF11111_consen  147 RLLRML  152 (176)
T ss_pred             HHHHHH
Confidence            665554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.68  E-value=4.7e-05  Score=44.25  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.+|.|+.||||||++.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.65  E-value=5.3e-05  Score=55.10  Aligned_cols=25  Identities=40%  Similarity=0.406  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      =.++++|++|||||||++.+-+.+.
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcC
Confidence            4689999999999999999987664

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.63  E-value=0.0024  Score=45.45  Aligned_cols=84  Identities=15%  Similarity=-0.012  Sum_probs=51.0

Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV  157 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  157 (203)
                      .+.++|+|+.....  ....+..+|.++++++.+. .+...+..+++.+...  ......+++|+.+....  ...+...
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence            68999999754332  3445688999999998874 3444444555554442  12346789999986532  2222234


Q ss_pred             HHHHHcCCeEE
Q 048709          158 EFAEDQGLFFS  168 (203)
Q Consensus       158 ~~~~~~~~~~~  168 (203)
                      .+....+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK07261 topology modulation protein; Provisional

Probab=97.63  E-value=4.4e-05  Score=54.34  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+|+|+|++|||||||.+.|..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>PRK08118 topology modulation protein; Reviewed

Probab=97.62  E-value=5e-05  Score=53.87  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.61  E-value=5e-05  Score=54.35  Aligned_cols=23  Identities=22%  Similarity=0.653  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ++|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999876

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.60  E-value=0.0021  Score=45.99  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .=.++++|+.|+|||||++.+.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3479999999999999999998854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.58  E-value=0.0014  Score=48.49  Aligned_cols=103  Identities=10%  Similarity=0.009  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  153 (203)
                      .+.+.|+|+.|.....  ....+..+|.+|+=.-.+..+  .-.....|+..+.+..++.+|.-|+.|++.-... ....
T Consensus        83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHH
Confidence            4678999999854322  344567799998877666422  2222345666666666688999999999974321 1112


Q ss_pred             HHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          154 EDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ..+.++..  ++|++.+...+..-+.+++.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            22333333  58888888877766666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.58  E-value=0.00083  Score=45.67  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ...++++|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999987644

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.58  E-value=7.4e-05  Score=55.49  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -|+++|++|||||||+|.+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            489999999999999999987543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.57  E-value=6.1e-05  Score=51.72  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

...

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.52  E-value=6.2e-05  Score=53.07  Aligned_cols=22  Identities=18%  Similarity=0.590  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999765

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.52  E-value=8.6e-05  Score=50.64  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++|+|+.|||||||++.|.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            368999999999999999998854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.51  E-value=0.0001  Score=54.36  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -++++|++|||||||+|.+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            589999999999999999877554

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00024  Score=57.77  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC------------Cc----cCCCCCcceeeEEEEEEE--------------CCEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE------------FC----FDSKSTIGVEFQTRTVTI--------------NSKI   76 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~~~   76 (203)
                      +-.++-|+....-|||||..+|..+.            +.    .+..+..++..+...+.+              ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            44678889999999999999986431            10    111112222111111111              3456


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc-ccCCCHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD-MWAVSAED  155 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~  155 (203)
                      +-++++|.||+..|.+-..+.++-.|+.++|+|--+.--.+.---+.+.+.    .++.-++++||.|.+- .-+...++
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~Ee  173 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQEE  173 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCCHHH
Confidence            778999999999999888888999999999999876422111111112222    2333467899999642 12455555


Q ss_pred             HHHHH
Q 048709          156 VVEFA  160 (203)
Q Consensus       156 ~~~~~  160 (203)
                      +-+-.
T Consensus       174 Lyqtf  178 (842)
T KOG0469|consen  174 LYQTF  178 (842)
T ss_pred             HHHHH
Confidence            54433

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.48  E-value=0.00011  Score=43.92  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |++.|++||||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.47  E-value=5.3e-05  Score=53.80  Aligned_cols=25  Identities=28%  Similarity=0.508  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ..-+++.||+|+||||+++.|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999999998866

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.45  E-value=0.00082  Score=49.03  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|+|++||||||+++.+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.44  E-value=0.0019  Score=53.24  Aligned_cols=86  Identities=13%  Similarity=-0.009  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      .+|+|=|.-+.-.......+.+.+..+.. ...|+|+++|-+-.............++-...++..+........-+...
T Consensus       196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~  275 (634)
T KOG1970|consen  196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF  275 (634)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence            35777777653322222222222222222 57899999987766432222222223333556666666666555555555


Q ss_pred             HHHHHHH
Q 048709          182 FFRLLQE  188 (203)
Q Consensus       182 ~~~i~~~  188 (203)
                      +..|+..
T Consensus       276 L~ric~~  282 (634)
T KOG1970|consen  276 LKRICRI  282 (634)
T ss_pred             HHHHHHH
Confidence            5555543

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.43  E-value=0.00036  Score=55.82  Aligned_cols=65  Identities=20%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             EEEEEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           76 IIKAQIWDTAGQERYRA-VTSA-----YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      .+.+.|+||+|...... +...     -.-+.|=+++|+|+.-.+.-.+....++.-...      .-+|+||.|..
T Consensus       182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlDGd  252 (451)
T COG0541         182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLDGD  252 (451)
T ss_pred             CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEcccCC
Confidence            35789999999543322 1111     124567799999998765444433333322211      25778898864

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.43  E-value=0.0006  Score=48.42  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..-++|+|.+|||||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999864

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.40  E-value=0.00014  Score=54.30  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      +.+++++|+|++|||||+|+..|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45699999999999999999988753

This is thought to be an ATPase involved in viral DNA packaging [].

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.39  E-value=0.0014  Score=50.40  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hh--------
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YR--------   91 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~--------   91 (203)
                      ......+++++|++|.|||++++++....-. .....             ...+.+.+..+|....    |.        
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~-~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPP-QSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCC-CCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            3456688999999999999999999874421 11111             1123455666664211    11        


Q ss_pred             ------------hhhHhhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 048709           92 ------------AVTSAYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHAD-SSIRIILIGNK  142 (203)
Q Consensus        92 ------------~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK  142 (203)
                                  ......++....=++++|=-+.   -+...-+..++.+..... -++|+|.++++
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                        1112345666677888885431   123333455555555554 68999999875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.39  E-value=0.0021  Score=53.64  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             EEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCccc------CCCHHHH--HHHHHHcCCeEEEE
Q 048709          103 GAVVVYDITK---RQSFDHVARGVEELRAHADSSI-RIILIGNKSDLVDMW------AVSAEDV--VEFAEDQGLFFSEA  170 (203)
Q Consensus       103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~------~~~~~~~--~~~~~~~~~~~~~~  170 (203)
                      -+|+|=|.-+   .+. ..+...+......  ... |+|+|++=+|.....      ..+.+.+  .++....++..+.+
T Consensus       134 kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F  210 (519)
T PF03215_consen  134 KVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF  210 (519)
T ss_pred             eEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence            4666666654   222 3334433433332  344 999999965432210      1111112  34455667778888


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~  189 (203)
                      .+....-+...+..|+..-
T Consensus       211 NpIa~T~mkKaL~rI~~~E  229 (519)
T PF03215_consen  211 NPIAPTFMKKALKRILKKE  229 (519)
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            8777767766666666543

>PRK06217 hypothetical protein; Validated

Probab=97.37  E-value=0.00017  Score=51.95  Aligned_cols=23  Identities=13%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998753

>PRK01889 GTPase RsgA; Reviewed

Probab=97.36  E-value=0.00024  Score=56.51  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -+++++|.+|+|||||+|.|.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998754

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=97.33  E-value=0.016  Score=44.92  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCc-EEEEEeCCCCCcc-----
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIR-IILIGNKSDLVDM-----  148 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~~-----  148 (203)
                      .+.+.++||+|.-....+ ...+..+|.++++...+ +.++..+...++.+.... ..+.+ ..+++|+.+....     
T Consensus       115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~  192 (290)
T CHL00072        115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYV  192 (290)
T ss_pred             cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHH
Confidence            356889999875322211 12356789998888765 445555544443333321 23333 3478899874210     


Q ss_pred             --------cCCCHHHHHHHHHHcCCeEEEEecCCCCC---HHHHHHHHHHHHHHhh
Q 048709          149 --------WAVSAEDVVEFAEDQGLFFSEASALNGDN---VDTAFFRLLQEIYALS  193 (203)
Q Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~---i~~~~~~i~~~~~~~~  193 (203)
                              ..+........+...+.++++.+.. ..+   ....+..+.+.+....
T Consensus       193 ~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~~  247 (290)
T CHL00072        193 EACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQP  247 (290)
T ss_pred             HHcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhCC
Confidence                    0011122222233444455554432 222   3556777777665543

>PRK03839 putative kinase; Provisional

Probab=97.33  E-value=0.00019  Score=51.50  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      +|+++|.|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.004  Score=50.34  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=26.0

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .....+..-+|+|||+.|+|||||+.-|++.
T Consensus       606 ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  606 LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             ccccccccceeEEECCCCccHHHHHHHHhcC
Confidence            3445667789999999999999999988774

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.30  E-value=0.0002  Score=51.71  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .=|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998753

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.30  E-value=0.00021  Score=47.98  Aligned_cols=21  Identities=19%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988654

...

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.29  E-value=0.00022  Score=46.36  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      -.++++|++|||||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.28  E-value=0.00026  Score=47.81  Aligned_cols=25  Identities=12%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -.++++|++|+||||+++.+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4789999999999999999977543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.28  E-value=0.00023  Score=47.94  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.28  E-value=0.00024  Score=48.67  Aligned_cols=21  Identities=43%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR00235 udk uridine kinase

Probab=97.28  E-value=0.00027  Score=51.91  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...-|+|+|++|||||||++.|.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.00027  Score=55.33  Aligned_cols=24  Identities=38%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -++++|++|||||||++.+.+-+-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999987543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.27  E-value=0.00026  Score=51.12  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .|+|+|++|||||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999664

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.27  E-value=0.0033  Score=48.85  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=76.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC----CCccC-------------CCCCcceeeEEEEEE-----------E-----
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN----EFCFD-------------SKSTIGVEFQTRTVT-----------I-----   72 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~----~~~~~-------------~~~~~~~~~~~~~~~-----------~-----   72 (203)
                      ..+.-|+++|-.|+||||-|-.|...    .....             .-..++.......+.           +     
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            34789999999999999998876321    00000             000000000111110           1     


Q ss_pred             -CCEEEEEEEEeCCCchhhh-hhh------HhhhcCCc-----EEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEE
Q 048709           73 -NSKIIKAQIWDTAGQERYR-AVT------SAYYRGAL-----GAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIIL  138 (203)
Q Consensus        73 -~~~~~~~~l~D~~g~~~~~-~~~------~~~~~~~d-----~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iv  138 (203)
                       ..+++.+.|+||+|.-.-. .++      ....+..+     =++++.|++-. .++.+.+.+-+. ...      --+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ea-v~l------~Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEA-VGL------DGI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHh-cCC------ceE
Confidence             1135788999999942111 111      11222233     37888898764 456665443222 222      368


Q ss_pred             EEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       139 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++||.|....    ---+..++...++|+..+-.  |++++++.
T Consensus       290 IlTKlDgtAK----GG~il~I~~~l~~PI~fiGv--GE~~~DL~  327 (340)
T COG0552         290 ILTKLDGTAK----GGIILSIAYELGIPIKFIGV--GEGYDDLR  327 (340)
T ss_pred             EEEecccCCC----cceeeeHHHHhCCCEEEEeC--CCChhhcc
Confidence            8999996431    12345566778888777653  44555443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.27  E-value=0.00023  Score=53.64  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =-++++|+.|||||||++.+.+
T Consensus        29 ~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          29 EITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999999976

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.26  E-value=0.00024  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++|+|++||||||+++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.26  E-value=0.00026  Score=50.27  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .=.++|+|++|+|||||+|-+.+=.
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhcc
Confidence            3578999999999999999886643

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.26  E-value=0.00027  Score=51.04  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.++++|++|||||||++.|.+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            357999999999999999999874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.25  E-value=0.00023  Score=51.82  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|.|++|||||||.+.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14530 adenylate kinase; Provisional

Probab=97.25  E-value=0.00026  Score=52.35  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00026  Score=52.23  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999977

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.23  E-value=0.00026  Score=50.94  Aligned_cols=21  Identities=14%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      .-|+++|++||||||+++.|.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.23  E-value=0.00029  Score=52.10  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.|.+..
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            468999999999999999998853

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.23  E-value=0.00031  Score=51.64  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....|+|.|++|||||||.+.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4589999999999999999998763

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.23  E-value=0.0003  Score=50.29  Aligned_cols=23  Identities=35%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~   49 (203)
                      ..-.++|+|+.|||||||++.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            44679999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.22  E-value=0.0005  Score=50.47  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4577889999999999999999754

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.22  E-value=0.00031  Score=48.27  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .|+|+|+.|||||||++.|.+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.20  E-value=0.0057  Score=47.24  Aligned_cols=21  Identities=38%  Similarity=0.385  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      -.|+|.|.+||||||+++.|-
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999984

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.20  E-value=0.00032  Score=51.80  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.+.+..
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998853

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00025  Score=51.58  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      --.+++||+|||||||++.|-
T Consensus        34 ~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          34 KVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ceEEEECCCCcCHHHHHHHHH
Confidence            346899999999999999874

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.20  E-value=0.00033  Score=51.55  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|+|||||++.|.+..
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.20  E-value=0.00031  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.19  E-value=0.00034  Score=51.52  Aligned_cols=24  Identities=38%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.+.+..
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998853

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.19  E-value=0.00035  Score=50.54  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.19  E-value=0.00034  Score=52.39  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.|.+..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14531 adenylate kinase; Provisional

Probab=97.19  E-value=0.00033  Score=50.39  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.+|+++|+|||||||+...|..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998854

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.19  E-value=0.00035  Score=51.52  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.+.+..
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.18  E-value=0.00035  Score=51.16  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999998854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.17  E-value=0.00037  Score=51.05  Aligned_cols=24  Identities=33%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|+|||||++.+.+..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998853

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14532 adenylate kinase; Provisional

Probab=97.17  E-value=0.00034  Score=50.46  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+++|+|||||||+...|..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-56
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		9e-56
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-55
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-55
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-55
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-55
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		6e-55
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-54
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-54
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		9e-52
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-51
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-51
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		9e-44
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-43
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-41
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-40
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-40
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-39
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-39
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-39
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		7e-39
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		7e-39
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		9e-39
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		9e-39
4fmc_B	171	Espg-Rab1 Complex Length = 171		9e-39
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-38
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-38
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-38
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-38
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-38
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-37
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-37
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-37
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-37
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-36
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-36
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-36
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-36
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		6e-36
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-36
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		9e-36
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-35
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-35
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-35
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-35
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-35
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-35
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-34
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		9e-34
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-33
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-33
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-33
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-33
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-33
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-33
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-33
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-33
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-33
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-33
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		7e-33
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-33
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		9e-33
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-32
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-32
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-32
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-32
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-31
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-31
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-29
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-29
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		6e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-29
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		9e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-28
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-28
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-28
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-28
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-28
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-28
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-27
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-27
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-27
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-26
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-26
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-26
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-26
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-25
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-25
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		8e-25
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-23
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-23
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-23
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-21
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		5e-21
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		6e-21
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		6e-21
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-20
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		4e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-19
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		5e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-18
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-17
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-17
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-17
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-17
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-17
1byu_A	216	Canine Gdp-Ran Length = 216		3e-17
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-17
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-17
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		6e-17
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-17
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-16
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-16
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-16
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		4e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		9e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-15
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-15
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-15
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		8e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-14
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		3e-14
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		5e-14
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-13
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		5e-13
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-13
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-12
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		4e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-12
1mh1_A	186	Small G-Protein Length = 186		4e-12
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-12
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-12
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-12
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-12
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-11
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		3e-11
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-11
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-11
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-11
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		5e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		6e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		7e-11
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		7e-11
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		7e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-11
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-11
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-11
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		3e-10
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		6e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		6e-10
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-10
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		7e-10
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		7e-10
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-10
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-10
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		8e-10
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-10
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-10
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		9e-10
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-09
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-09
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-09
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		9e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		9e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		9e-09
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		9e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-08
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		3e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		3e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-08
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		4e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		4e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-08
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		5e-08
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-08
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		8e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		8e-08
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		8e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		8e-08
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		9e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-07
2kb0_A	178	Cdc42(T35a) Length = 178		1e-07
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-07
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		6e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		6e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		6e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		6e-07
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		6e-07
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-07
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-06
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-06
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		4e-06
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		4e-06
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-06
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		6e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		6e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		7e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-05
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-05
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-05
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		4e-05
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-05
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-05
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		1e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		4e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		6e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		7e-04

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 133/168 (79%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GNK
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 134/172 (77%), Gaps = 1/172 (0%)
Query: 20  MIP-DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIK 78
           ++P    DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IK
Sbjct: 11  LVPRGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 70
Query: 79  AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIIL 138
           AQIWDTAGQERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L
Sbjct: 71  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 130
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           +GNKSDL  + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 131 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 182

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 133/176 (75%), Gaps = 1/176 (0%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D +FK+V+IGDS VGKS +LSRFTKNEF  DSKSTIGVEF TRT+ I  K IKAQIWDTA
Sbjct: 11  DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYRA+TSAYYRGA+GA++VYDI+K  S+++    + ELR +AD ++ + LIGNKSDL
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY-ALSKKELECG 200
             + AV  E+   FA++  L F+E SALN +NVD AF  L+  IY  +SK +++ G
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 141/180 (78%), Gaps = 1/180 (0%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQI 81
           D  DY+FK+V+IGDS VGKS +LSRFT++EF  +SKSTIGVEF T+++ + N+KIIKAQI
Sbjct: 2   DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQERYRA+TSAYYRGA+GA++VYDITK+ SF+++ + ++ELR +ADS+I I+L+GN
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGN 201
           KSDL  +  ++  D  ++A+ + L F E SAL   NV+ AF +LL EIY + +K+    N
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  211 bits (538), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 132/168 (78%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GNK
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 132/169 (78%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
            D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQI
Sbjct: 2   SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GN
Sbjct: 62  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           KSDL  + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 170

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  209 bits (533), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 131/168 (77%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIW
Sbjct: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I L+GNK
Sbjct: 66  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNK 125
Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           SDL  + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 126 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/173 (59%), Positives = 135/173 (78%), Gaps = 1/173 (0%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             + AV  ++   FAE   L F E SAL+  NV+ AF  +L EIY + S+K++
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 129/165 (78%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I L+GNKSDL
Sbjct: 63  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             + AV  ++   FAE  GL F E SAL+  NV+ AF  +L EIY
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 135/180 (75%), Gaps = 3/180 (1%)
Query: 20  MIP---DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI 76
           ++P   +  ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVEF TRTV + +  
Sbjct: 14  LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 73
Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI 136
           +KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++  V R ++EL  HA+++I +
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           +L+GNKSDL     V  E+   FAE+ GL F E SAL+  NV+ AF  +L+EI+A   K+
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 131/171 (76%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVEF TRTV + +  +KAQIWDTA
Sbjct: 8   NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++V+D+TK Q++  V R ++EL  HA+++I ++L+GNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
                V  E+   FAE+ GL F E SAL+  NV+ AF  +L+EI+A   K+
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 127/170 (74%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+V+IGDS VGKS +LSRFT +EF  +SKSTIGVEF TRT+ + +K IKAQIWDTA
Sbjct: 8   DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           G ERYRA+TSAYYRGA+GA++VYDI+K  S+++    + ELR +AD ++ + LIGNKSDL
Sbjct: 68  GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
             + AV  ++   FA +  + F+E SALN DNVD AF  L+  I+ +  K
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  172 bits (437), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 117/169 (69%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++ + IK QI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++  + + R   + +  IILIGN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL     V+ E+  +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  170 bits (430), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 116/169 (68%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++ + IK QI
Sbjct: 24  PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 83
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQ R+RAVT +YYRGA GA++VYDIT+R +++H++  + + R   + +  IILIGN
Sbjct: 84  WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL     V+ E+  +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/164 (50%), Positives = 111/164 (67%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R +TI+ K IK QIWDTAG
Sbjct: 9   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R +F+H+   +E+ R H++S++ I+LIGNKSDL 
Sbjct: 69  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               V  E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           ++P +  Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R V I+ K IK 
Sbjct: 14  LVP-RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKL 72
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
           QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+   +E+ R H+ S++ I+LI
Sbjct: 73  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           GNKSDL     V  E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           M P+  DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+++ +K +K 
Sbjct: 2   MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
           QIWDTAGQER+R +TS+YYRGA G ++VYD+T R SFD+V + ++E+  +A  ++  +L+
Sbjct: 61  QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLV 120
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DLV    V++++  E A+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 115/167 (68%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
           +DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++ K IK QIWDT
Sbjct: 3   MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
           AGQER+R +T+AYYRGA+G ++VYDIT  +SFD++   +  +  HA + +  +++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
           + D   VS E   + A D G+ F E SA    NV+ AFF L ++I A
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           M P+  DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK 
Sbjct: 9   MNPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
           QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DL     V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 114/166 (68%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++ K IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++   +  +  HA + +  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
            D   VS E   + A D G+ F E SA    NV+ AFF L ++I A
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 111/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++S+ +V + ++E+  +A  ++  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 111/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 7   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++S+ +V + ++E+  +A  ++  +L+GNKSDL
Sbjct: 67  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ AF  +  EI
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 111/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 23  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL
Sbjct: 83  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 110/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK +VIG +  GKS +L +F +N+F  DS  TIGVEF +R V +  K +K QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +A  + + R  A  +I +IL GNK DL
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V+  +   FA++  L F E SAL G+NV+ AF +  + I
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 111/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           M P+  DY+FK+++IGDS VGK+ +L RF  + +     STIGV+F+ RT+ ++ K IK 
Sbjct: 9   MNPE-YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
           QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+
Sbjct: 68  QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DL     V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++ K +K QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V   ++E+  +A S++  +L+GNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            D   V  +   EFA+   + F E SAL+  NV+ AF  + ++I
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 115/164 (70%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++ K +K QIWDTA
Sbjct: 6   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V   ++E+  +A S++  +L+GNK DL
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            D   V  +   EFA+   + F E SAL+  NV+ AF  + ++I
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 119/172 (69%), Gaps = 2/172 (1%)
Query: 20  MIP--DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKII 77
           ++P   + DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++ K +
Sbjct: 11  LVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 70
Query: 78  KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII 137
           K QIWDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V   ++E+  +A S++  +
Sbjct: 71  KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 130
Query: 138 LIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L+GNK DL D   V  +   EFA+   + F E SAL+  NV+ AF  + ++I
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 110/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 31  DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ +F     EI
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+G K DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 124/181 (68%), Gaps = 5/181 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K Q+WDTA
Sbjct: 18  DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYD+T  ++F ++ +  + +  HA+   +++L+GNKSD+
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQEIYALSKKELECGNG 202
            +   V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE    S K +  GNG
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID-SNKLVGVGNG 195
Query: 203 K 203
           K
Sbjct: 196 K 196

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/164 (45%), Positives = 110/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D +FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTA
Sbjct: 4   DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  150 bits (379), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 117/166 (70%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  ++F ++ +  + +  HA+   +++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            +   V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 112/169 (66%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           + +  D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + +  K +K Q
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
           IWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +   + + R  A  +I IIL G
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           NK DL     V+  +   FA++  L F E SAL G+NV+ AF +  ++I
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Query: 22  PD-KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           PD + D++FK+V++GD++VGK+ ++ RF    F     STIGV+F  +T+ I  K +K Q
Sbjct: 22  PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQ 81
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
           IWDTAGQER+R +T +YYR A GA++ YDITKR SF  V   +E++R +A S+I  +LIG
Sbjct: 82  IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIG 141
Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFS-EASALNGDNVDTAFFRLLQEI 189
           NKSDL ++  VS  +    AE   +  + E SA +  NV+ AF R+  E+
Sbjct: 142 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  148 bits (373), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/160 (45%), Positives = 107/160 (66%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           +R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL    
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            V      EFA+  G+ F E SA N  NV+ +F  +  EI
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 116/164 (70%), Gaps = 4/164 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R +T+AYYRGA+G ++VYD+T  ++F ++ +  + +  HA+   +++L+GNKSD+ +
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
              V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 111/170 (65%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           ++P   DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  + K IK 
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
           QIWDTAGQERYR +T+AYYRGA+G +++YDI  ++SF  V     +++ ++  + ++IL+
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           GNK DL D   V AED    A+D G  F EASA    NV   F RL+  I
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 115/166 (69%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA G ++VYDIT  ++F ++ +  + +  HA+   +++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            +   V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 110/164 (67%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + +  K +K QIWDTA
Sbjct: 9   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +   + + R  A  +I IIL GNK DL
Sbjct: 69  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V+  +   FA++  L F E SAL G++V+ AF +  ++I
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV IN + +K QIWDTA
Sbjct: 7   DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS YYRG  G +VVYD+T  +SF +V R + E+  + D   R IL+GNK+D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKNDD 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
            +   V  ED  +FA   G+   E SA    NV+   F  + E+   +KK+
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVE-EMFNCITELVLRAKKD 175

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 107/167 (64%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD   GKS ++ RF K++F    +STIG  F ++T+ +N   +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           Y ++   YYRGA  A++V+D+T + SF+   + V+EL+A  + ++ + L GNKSDL+D  
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
            V+AED   +A++ GLFF E SA    NV   F+ + + +  +   E
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 115/166 (69%), Gaps = 4/166 (2%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA G ++VYD+T  ++F ++ +  + +  HA+   +++L+GNKSD 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF---RLLQE 188
            +   V+A+     A++ G+ F E+SA N DNV+  FF   +L+QE
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           P   D+  +V++IG   VGK+ ++ RFT + FC   KST+GV+F+ +TV +  K I+ QI
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + + ++ +  +A     ++L+GN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 142 KSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
           K D      ++ +   +FA+   G+ F EASA +  NVD  F +L+ +I
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 110/165 (66%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
            DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
           AGQERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ ++  + +++L+GNK D
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           + D   VS+E   + A+  G  F EASA +  NV   F RL+  I
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 109/164 (66%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + +  K +K QIWDTA
Sbjct: 6   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           G ER+R+VT +YYRGA GA++VYDIT R++++ +   + + R  A  +I IIL GNK DL
Sbjct: 66  GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                V+  +   FA++  L F E SAL G++V+ AF +  ++I
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 104/160 (65%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV IN + +K QIWDTA
Sbjct: 24  DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +   + E+  +A + +  +L+GNK DL
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
            +   VS +   EF+E Q +++ E SA   DNV+  F  L
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  139 bits (350), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 102/161 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T++V ++   +K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT +++F      V+EL+  A  SI I L GNK+DL + 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V  E+   +A+D  L F E SA    NV+  F  + +++
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 102/161 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 107/165 (64%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
            DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +TV  + K +K QIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
           AGQERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ ++  + ++IL+GNK D
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCD 139
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           + +   V  E     AE  G  F EASA    +V  AF RL+  I
Sbjct: 140 MEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 101/168 (60%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV   +++ K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+ ++   YYRG+  AV+VYDITK+ SF  + + V+EL+ H   +I + + GNK DL D+
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
             V  +D  E+AE  G    E SA N  N++  F  + ++I  L   E
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+S VGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 109/177 (61%)
Query: 25  IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
            DY FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
           AG ERYR +T+AYYRGA G ++ YDIT  +SF+ V     +++ ++  + +++L+GNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGN 201
             D   VS+E   + A+  G  F EASA +  NV   F RL+  I     + L+  +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTAD 181

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 100/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F      V+EL+  A  +I I L GNK+DL   
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 3/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           + ++   YYR A  A+VVYD+TK QSF      V+EL   A   I I L+GNK D +   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 150 A---VSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               V+ E+  + AE++GL F E SA  G+NV+  F  + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F      V+EL+  A  +I I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STI   F T+TV ++   +K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT   +F      V+EL+  A  +I I L GNK+DL   
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            AV  ++   +A+D  L F E SA    NV+  F  + +++
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 96/161 (59%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV   +++ K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +   V ELR H   SI + + GNK DL D+
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V   D  ++A+     F E SA N  N++  F  + + I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 95/161 (59%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV   +++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +   V ELR H   SI + + GNK DL D+
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V   D  ++A+     F E SA N  N++  F  + + I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 107/174 (61%), Gaps = 1/174 (0%)
Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQI 81
           D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++   +K Q+
Sbjct: 5   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+R+VT AYYR A   +++YD+T + SFD++   + E+  +A   + ++L+GN
Sbjct: 65  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
           K D      V  ED  + A++ GL F E SA  G NVD AF  + +E+   S K
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 86/115 (74%)
Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
           +++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 101/154 (65%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+V +G+ AVGK+ I++RF  + F  + +STIG++F ++T+ ++   ++ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  A+VVYDIT RQSF++  + ++++       + I L+GNK+DL D+
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
             V+ E+  + A++    F E SA  G N+   F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 109/175 (62%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  N++          
Sbjct: 23  DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
            +  Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V   + +L+A+A   + 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+LIGNK+DL D   V+     E A+  G+ + E SA  G NV+ A   LL  I
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 6/167 (3%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+V+ GD+AVGKS  L R  KNEF  +  +T+GV+FQ +T+ ++ +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y+R A G +++YD+T  +SF ++   V+ +   A  ++ I+L+GNK+D+ D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 149 WAVSAEDVV------EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            A   +  V      + A   G  F E SA +G N+  A   L +E+
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 100/157 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 106/175 (60%), Gaps = 11/175 (6%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----------K 75
           DY+ K + +GDS VGK+ +L ++T  +F     +T+G++F+ + V   +          +
Sbjct: 9   DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
            I  Q+WDTAG ER+R++T+A++R A+G ++++D+T  QSF +V   + +L+ HA S + 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            I+L GNKSDL D  AV  E+  E AE  G+ + E SA NG N+  A   LL  I
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 102/157 (64%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF   ++ ++++R    S + I+L+GNK+DL D 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             ++ E+  + A++  + F E SA  G NV   F R+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRV 159

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 101/157 (64%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF   ++ ++++R    S + I+L+GNK+DL D 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++    K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
           R+R +T +YYRGA G ++VYD+T+R +F  +   + EL  +   + I   L+GNK D  +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V   + ++FA      F EASA   D V  AF  L+++I
Sbjct: 136 R-EVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 100/157 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 99/157 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +++          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSI 134
            +  Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V   + +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
            I+LIGNK+DL D   V+     E AE  G+ + E SA  G NV+ +   LL  I    +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 KELE 198
           K +E
Sbjct: 189 KCVE 192

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 112/184 (60%), Gaps = 11/184 (5%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +++          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
            +  Q+WDTAG ER+R++T+A++R A+G ++++D+T +QSF +V   + +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
            I+LIGNK+DL D   V+     E AE  G+ + E SA  G NV+ +   LL  I    +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRME 188
Query: 195 KELE 198
           K +E
Sbjct: 189 KCVE 192

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 99/157 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 99/157 (63%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
             VS E+    A++  + F E SA  G NV   F R+
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +++          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SI 134
            +  Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V     +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
            I+LIGNK+DL D   V+     E AE  G+ + E SA  G NV+ +   LL  I    +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 195 KELE 198
           K +E
Sbjct: 189 KCVE 192

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  +++          
Sbjct: 9   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSI 134
            +  Q+WDTAG ER+R++T+A++R A G ++ +D+T +QSF +V     +L+A+A   + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
            I+LIGNK+DL D   V+     E AE  G+ + E SA  G NV+ +   LL  I    +
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 195 KELE 198
           K +E
Sbjct: 189 KCVE 192

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I  K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V   V+ELR    + I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++   +AE  G      SA     ++  F  L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+ + IK Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 88  ERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDL 145
           ER+R ++   YYR     V VYD+T   SF  +   +EE + H  ++ I  IL+GNK DL
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
                V  +   +FA+   +   E SA N    D+V+  F  L  ++
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +P     +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+ + IK Q
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 81  IWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIIL 138
           +WDTAGQER+R ++   YYR     V VYD T   SF  +   +EE + H  ++ I  IL
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRIL 141
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAFFRLLQEI 189
           +GNK DL     V  +   +FA+       E SA N    D+V+  F  L  ++
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+   F T+ + I  K +   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V   V+ELR    + I + ++GNK DL 
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++   +AE  G      SA     ++  F  L + +
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%)
Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+   F T+ + I  K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V   V+ELR    + I + ++GNK DL 
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++   +AE  G      SA     ++  F  L + +
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 101/164 (61%), Gaps = 11/164 (6%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAG 86
           + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ VT++  K+   Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNK 142
           QER++++  A+YRGA   V+VYD+T   SF+++    +E   HA+     +   +++GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 143 SDLVDMWAV----SAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
            D  +   +    SA+++ +   D  LF +  SA N  NVDTAF
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLT--SAKNAINVDTAF 169

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 40/199 (20%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI---------------- 72
           +K V++G+S+VGKS I+ R TK+ F  ++ +TIG  F T  V +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 73  ---------------------NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT 111
                                N   IK  IWDTAGQERY ++   YYRGA  A+VV+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 112 KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEAS 171
              + D     V +L+    S+  IIL+ NK D  + + V   +V ++A+D  L F + S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 172 ALNGDNVDTAFFRLLQEIY 190
           A  G N+   F+ L +EIY
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
            + A+T AYYRGA   V+V+  T R+SF+ ++   E++ A     I   L+ NK DL+D 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
             +  E+    A+   L F   S     NV   F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FK++++GD  VGKS +++R+  N+F      TIGVEF  + + ++   +  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GNK+
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
           D+ +   VS E+   + +D G + + E SA +  NV  AF   ++ I A
Sbjct: 131 DIKER-QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++GD  VGKS +++R+  N+F   +  TIGVEF  R + ++ + +  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
           ER++++ + +YRGA   ++ + +  RQSF+++    +E   +AD         +++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
           D  D    + E      E+    + E SA +  NV  AF   ++++ A+ ++
Sbjct: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++   +  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
           D+ +   VS E+   +  D G + + E SA +  NV  AF   ++ + A
Sbjct: 127 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++   +  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKS 143
           ER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 144 DLVDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
           D+ +   VS E+   +  D G + + E SA +  NV  AF   ++ + A
Sbjct: 129 DISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +    +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL +    +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +    +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL +    +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 74
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D 
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             VS E+    AE   + + E SA    NVD  FF L++EI A
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 78
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             VS E+    AE   + + E SA    NVD  FF L++EI A
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             VS E+    AE   + + E SA    NVD  FF L++EI A
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +    +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           D  +    +            + + E SA    NV+ AF
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             VS E+    A+   + + E SA    NVD  FF L++EI A
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKS 143
           ER++++  A+YRGA   V+V+D+T   +F  +    +E    A      +   +++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL +    +            + + E SA    NV+ AF
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDM 148
           Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             VS E+    AE   + + E SA    NVD  FF L++EI A
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 169

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADS-SIRIILIGNKSDLVD 147
           Y A+   Y+R   G ++V+ IT+ +SF   A   E+ LR  A+   I ++++GNKSDL +
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E+    AE+ G+ + E SA    NVD  FF L++EI
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADS-SIRIILIGNKSDLVD 147
           Y A+   Y+R   G ++V+ IT+ +SF   A   E+ LR  A+   I ++++GNKSDL +
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E+    AE+ G+ + E SA    NVD  FF L++EI
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI-IKAQIWDTAGQ 87
            K+VV+GD A GK+ + + F +  F    K TIG++F  R +T+   + +  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA---RGVEELRAHADSSIRIILIGNKSD 144
                +   Y  GA G ++VYDIT  QSF+++      V+++   +++   + L+GNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192
           L  M  +  E  + F ++ G      SA  GD+V   F ++  EI  +
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           +Y  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF      T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
           +K+ +IGD  VGK+  ++R     F  +  +T+G V      +     +IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           E+   +   YY GA GA++ +D+T R +  ++AR V+E +A   +   I++  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
              +S + V+E  + +   + E SA    N    F  L
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 122
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 123 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF      T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 135 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++ +D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  +   + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 125
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 126 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 131
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 132 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+++   DS  + ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  +   + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 129
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 130 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    E      +T+GVE        N   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 134
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +V F   + L + + SA +  N +  F  L +++
Sbjct: 135 -KVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ + 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 124
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +  F   + L + + SA +  N +  F  L +++
Sbjct: 125 -KVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ + 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 123
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+ +  F   + L + + SA +  N +  F  L +++
Sbjct: 124 -KVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +TIGVE    +   N   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L      +I I+L GNK D+ + 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKER 131
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A+  + F   + L + + SA +  N +  F  L +++
Sbjct: 132 -KVKAK-TITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KVV++G   VGK+ +  +F + EF      T+   + ++ VT+        + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR-AHADSSIRIILIGNKSDLVDM 148
           Y  +  ++  G  G V+VY +T   SF  +    ++L   H  + + ++L+GNK+DL   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             V A +  + AE  G  F E+SA         F +++QEI
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V ++   +   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S+++VA+  + ELR H    + IIL+G K DL D
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRD 124

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ + G + VGKS ++ RF    F ++   T+   ++ +  TI+ +++  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED 88
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV---ARGVEELRAHADSSIRIILIGNKSDLV 146
                  + R   G V+VYDIT R SF+ V      ++E++     ++ +IL+GNK+DL 
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADLD 145
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
               VS E+  + A +    F E SA  G+ N+   F+ L +E+
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F +  V +N   +   +WDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S+++V++  + EL+ H    + I+L+G K DL D
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRD 126

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 30  KVVVIGDSAVGKSQILSRFTK--NEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW--DTA 85
           KV V+G++ VGKS ++S FT   ++F  D   T GVE     VTI    +  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL---RAHADSSIRIILIGNK 142
           G + Y+   S Y+ G   A++V+D++  +SF+      E L   R   +  +R +L+ NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 143 SDLVDM-WAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIY 190
           +DL      V  +   ++A    L FF  ++   G + D  F  +    Y
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K V +GD AVGK+ +L  +T N+F  D   T+   F    V ++ +I+   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    YRGA   V+ + +  + S+++V +  + ELR  A  ++ I+L+G K DL D
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRD 127

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++++    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F  +   TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++++    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 148 MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A       F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 41  KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F ++ F  D   TI   + T+  +++    +  I DTAGQE + A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
             G ++V+ I  RQSF+ V +   + LR        ++L+GNK+DL     V   +   F
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
                + + EASA    NVD AF +L++ +    ++EL
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  +   + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+++   DS  + ++L+GNKSDL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  +   + A   G+ F E SA     VD AF+ L++EI
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V +GD AVGK+ +L  +T N F  D   T+   F    V ++   +   +WDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    YRGA   ++ + +  + S++++  + + EL+ H    I I+L+G K DL D
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRD 124

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 41  KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F ++ F  D   TI   + T+   I+ +  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
             G ++V+ +T R SF+ + +   + LR        +ILIGNK+DL     V+ E+  + 
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           A    + + EASA    NVD AF  L++ I
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++SK +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+   E+R H  S+  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           K+    K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WD
Sbjct: 3   KLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWD 61
Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNK 142
           TAGQE Y  +    Y     +++ + +    SF++V A+   E+R H  ++  IIL+G K
Sbjct: 62  TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTK 120
Query: 143 SDLVD----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
            DL D    +  +  + +      QGL  +         E SAL    + T F
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +I    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y     +++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 123
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF  +    E+++   DS  + ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-P 139
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
              V  +   E A+  G+ F E SA     V+ AF+ L++EI     K+L
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++SK +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+   E+R H  S+  IIL+G K DL D
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 127
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+++   DS  + ++L+GNK DL  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  +   + A   G+ F E SA     VD AF+ L++EI
Sbjct: 141 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++SK +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    S+++V A+   E+R H  S+  IIL+G K DL D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST-PIILVGTKLDLRD 128
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+N +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+   V  G + L       I I+L+GNK DL  
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
              +S E+    AE     F E+SA         F R++ E     K +  C  GK
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE---AEKMDGACSQGK 178

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 41  KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE Y A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 101 ALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVDMWAVSAEDVVEF 159
             G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL     V +    + 
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           A   G+ + E SA     V+ AF+ L++EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 90
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
              +  +  + +      QGL  +         E SAL    + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQED 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 132
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
              +  +  + +      QGL  +         E SAL    + T F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 140
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F   +  TI   F T+ +T+N +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+   V  G + L       I I+L+GNK DL  
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
              +S E+    AE     F E+SA         F R++ E
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+   E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
           D    +  +  + +      QGL  +         E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+   E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
           D    +  +  + +      QGL  +         E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +T N F  +   T+   + +  V ++ K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF HV A+   E+R H  ++  IIL+G K DL 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT-PIILVGTKLDLR 272
Query: 147 D----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
           D    +  +  + +      QGL  +         E SAL    + T F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F      TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 128
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F      TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GN+ DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   +I   ++ + V I+ +     I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 127
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGK+ +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+N +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+   V  G + L       I I+L+GNK DL  
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
              +S E+    AE     F E+SA         F R++ E
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   +I   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
              V +    + A   G+ + E SA     V+ AF+ L++E
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+N +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVD 147
           Y      Y     G ++VY +T  +SF+   V  G + L       I I+L+GNK DL  
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHG-KLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
              +S E+    AE     F E+SA         F R++ E
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N    +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 148
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM 148
           Y  +    Y      ++ + +    SF++V A+   E+R H   +  I+L+G K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD- 121
Query: 149 WAVSAEDVVEFAEDQGL 165
                +D +E   D+ L
Sbjct: 122 ----DKDTIERLRDKKL 134

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H   +  I+L+G K DL D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 MWAVSAEDVVEFAEDQGL 165
                 +D +E   D+ L
Sbjct: 123 -----DKDTIERLRDKKL 135

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H   +  I+L+G K DL D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVGTKLDLRD 122
Query: 148 MWAVSAEDVVEFAEDQGL 165
                 +D +E   D+ L
Sbjct: 123 -----DKDTIERLRDKKL 135

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+   +    V ++ K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 121
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDD 149
Query: 148 ---MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
              +  +  + +      QGL  +         E SAL    + T F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  D   TI   +   T  I+++     
Sbjct: 6   VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILD 64
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R  +  LR     S  +IL+
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +  V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 126
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 65
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H  ++  IIL+G K DL D
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRD 124
Query: 148 ----MWAVSAEDVVEFAEDQGLFFS---------EASALNGDNVDTAF 182
               +  +  + +      QGL  +         E SAL    + T F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 35/187 (18%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 89  RYRAVTSAYYRGALGAVVVYDITKR-------------------QSFDHV-ARGVEELRA 128
            Y  +    Y   +G     DIT R                    SF++V A+   E+R 
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 129 HADSSIRIILIGNKSDLVD----MWAVSAEDVVEFAEDQGLFFS---------EASALNG 175
           H  ++  IIL+G K DL D    +  +  + +      QGL  +         E SAL  
Sbjct: 125 HCPNT-PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 176 DNVDTAF 182
             + T F
Sbjct: 184 RGLKTVF 190

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  D   TI   +   T  I+++     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R  +  LR     S  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +  V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KVV++GD   GK+ +L  F    F      T+   +    + +  K +   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +   +Y  A   ++ +D+T   SFD++  R   E+  H    + II++G K+DL
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDL 150

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
              A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNK DL  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA- 121
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  +   TI   ++  T  I+++     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILD 69
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R  +  LR     S  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +  V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Query: 21  IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQ 80
           +P +    +K+VV+GD  VGKS +  +F +  F  +   TI   +   T  I+++     
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAILD 69
Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILI 139
           + DTAGQE + A+   Y R   G ++VY +T + SF+HV R  +  LR     S  +IL+
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEI 189
            NK DL+ +  V+ +   E A    + + E SA +   NVD  F  L++ I
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+VV+GD AVGK+ +L  F+K E       T+   F       N + I   +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 82
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
            Y  +    Y  +   ++ + +  R SFD+++   E    H   + + +L+G K DL
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+VV+GD AVGK+ +L  F+K E       T+   F       N + I   +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQE 81
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
            Y  +    Y  +   ++ + +  R SFD+++   E    H   + + +L+G K DL
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 138

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+++ I+  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EFQTRTVTINSKIIKAQIWDTAGQE 88
           K+VV+GDS  GK+ +L  F K+  CF       V E  T +  I+++ I+  +WDT+G  
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKD--CFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
            Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL
Sbjct: 67  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV-EFQTRTVTINSKIIKAQIWDTAGQE 88
           K+VV+GDS  GK+ +L  F K+  CF       V E  T +  I+++ I+  +WDT+G  
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKD--CFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 82
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
            Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL
Sbjct: 83  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 139

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 123

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   ++ + ++ +  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE---ELRAHADSSIRIILIGNKSDL 145
           ++ A+           ++VY IT RQS + +    E   E++   + SI I+L+GNK D 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDE 121
Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
                V + +    A      F E SA    NV      L QE+  L K+
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVK----ELFQELLNLEKR 167

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDL 141

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T    F +  V+++ + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDE 80
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDL 145
           +  +    Y      ++ + +    SF +V+ + V E+R H   +  IIL+G +SDL
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-PIILVGTQSDL 136

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 122

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L  F+K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y       Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GD A GK+ +L  F+K+EF      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + +    S +++  + V E++ H   ++ IIL+ NK DL
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDL 141

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Query: 41  KSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG 100
           KS +  +F    F      TI  +F  + + ++S     +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 101 ALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF 159
             G ++VY +  +QSF  +    ++ +R      + +IL+GNK DL     VS+ +    
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 160 AEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           AE+ G  F E SA +   VD  F  +++++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 131

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 123

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +   ++  RA     I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV    VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +   II   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +   ++  RA     I IIL
Sbjct: 98  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV    VS  +    A      F E SA    NV   F  +++++
Sbjct: 151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +   ++  RA     I IIL
Sbjct: 67  KGENEWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV    VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 85  AGQERY-----RAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIIL 138
            G+  +       V  AY       ++VY IT R SF+  +   ++  RA     I IIL
Sbjct: 67  KGENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +GNKSDLV    VS  +    A      F E SA    NV   F  +++++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 28  VFKVVVIGDSAVGKSQILSRFT-KNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           +++VV++GD  VGK+ + S F  K E   D    +G +   RT+T++ +     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQER--DLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 87  QERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKS 143
            E+     S  +  +G    V+VY I  R SF+  +   ++  R H    + IIL+GNK+
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           DL     VS E+    A      F E SA    NV   F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---- 145
           Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL    
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 146 --------VDMWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                   +    V  E+  + A   G F + E SA   D V   F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           ++P       ++ ++G    GK+  ++     +F  D   T+G  F  R VT  +  IK 
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK- 70
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
            IWD  GQ R+R++   Y RG    V + D   R+  +     +  L        I +++
Sbjct: 71  -IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           +GNK DL +  A+  + ++E       +D+ +     S    DN+D     L+Q
Sbjct: 130 LGNKRDLPN--ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGQ 54
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 113 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 112
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 113 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLV 146
           E Y  +    Y      ++ + +    SF +V    V EL+ +A  ++  +LIG + DL 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 147 D 147
           D
Sbjct: 136 D 136

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 124
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 125 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 126 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 434
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 435 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 148 ------------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                          ++ E   + A D + + + E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +    +   +   TV I  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N+   +   T+   +   TV I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 148 ------------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                          ++ E   + A D + + + E SAL    +   F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N+F  +   T+   +   TV I  +     ++DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      +V + +    SF++V  + V E+  H   +   +L+G + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 148 -----------MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
                         ++ E   + A D + + + E SAL    +   F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQE 88
           +++ +G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  GQ+
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   YY G  G + V D   R   D   + +  +    +    IILI  NK DL D
Sbjct: 56  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Query: 148 MWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
             A    ++ E        D+  +   + A +GD +
Sbjct: 116 --AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 149

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           ++P       KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN+   + 
Sbjct: 14  LVPRGSHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RF 68
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
            +WD  GQE  R+  + YY      +VV D T R+        + ++ AH D     +++
Sbjct: 69  LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLI 128
Query: 139 IGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
             NK D+ +   ++  ++ +F      +D         AL G+ +
Sbjct: 129 FANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 171

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 56
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 57  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 114
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 115 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 151

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 67
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 68  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 125
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 126 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 162

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+  C+  ++ +   F+  T  + +  + ++ 
Sbjct: 21  PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 77
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D   +           S R++LI
Sbjct: 78  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
Query: 140 GNKSDL 145
           G K+DL
Sbjct: 138 GCKTDL 143

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG-VEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G  A GK+ IL +    +    S +TI  V F   TVT   K +K  +WD  G 
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVT--YKNVKFNVWDVGGL 57
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSD 144
           ++ R +   YY G  G + V D   R   D   +  E  R   D  +R   I++  NK D
Sbjct: 58  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ--ELHRIINDREMRDAIILIFANKQD 115
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L D  A+   ++ E        D+  +   + A +GD +
Sbjct: 116 LPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 152

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+  C+  ++ +   F+  T  + +  + ++ 
Sbjct: 4   PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 60
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D   +           S R++LI
Sbjct: 61  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 120
Query: 140 GNKSDL 145
           G K+DL
Sbjct: 121 GCKTDL 126

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS--KIIKA 79
           P  +    K+V++GD   GK+ +L    K+  C+  ++ +   F+  T  + +  + ++ 
Sbjct: 5   PQPVVARCKLVLVGDVQCGKTAMLQVLAKD--CY-PETYVPTVFENYTACLETEEQRVEL 61
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
            +WDT+G   Y  V    Y  +   ++ +DI++ ++ D   +           S R++LI
Sbjct: 62  SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 121
Query: 140 GNKSDL 145
           G K+DL
Sbjct: 122 GCKTDL 127

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN+   +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
             ++  ++ +F      +D         AL G+ +
Sbjct: 132 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN+   +  +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEE--IVINNT--RFLMWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
             ++  ++ +F      +D         AL G+ +
Sbjct: 132 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           ++P       ++ ++G    GK+  ++     +F  D   T+G  F  R +T  +  IK 
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK- 70
Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIIL 138
            +WD  GQ R+R++   Y RG    V + D   ++  +     +  L        I +++
Sbjct: 71  -LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129
Query: 139 IGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           +GNK DL    A+  ++++E       +D+ +     S    DN+D     L+Q
Sbjct: 130 LGNKRDLPG--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F+ NE    S  TIG   +   + IN+   +  +WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNVEE--IVINNT--RFLMWDIGGQES 77
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDM 148
            R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+ + 
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE- 136
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
             ++  ++ +F      +D         AL G+ +
Sbjct: 137 -CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA------RGVEELRAHADSSIRIILIGNK 142
           R R +   Y++   G + V D   R+    VA        V+ELR        ++L  NK
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV-----LLLFANK 127
Query: 143 SDLVDMWAVS 152
            DL +  A+S
Sbjct: 128 QDLPNAMAIS 137

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            ++ ++G    GK+  ++     +F  D   T+G  F  R +T  +  IK  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
           R+R++   Y RG    V + D   ++  +     +  L        I ++++GNK DL  
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 148 MWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
             A+  ++++E       +D+ +     S    DN+D     L+Q
Sbjct: 148 --ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++GD A GK+ +L   +K +F      T+  E     V ++ + ++  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           Y  +    Y  +   ++ + I    S ++V         H    + IIL+G K DL
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDL 126

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG   +T    +  + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   YY    G + V D   R+  D     +  +    +    IIL+  NK DL + 
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPN- 132
Query: 149 WAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAF 182
            A+SA +V E        ++  F     A  GD +   F
Sbjct: 133 -AMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGF 170

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 130
Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 131 PN--AMNAAEITD 141

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 17  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 72  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 129
Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 130 PN--AMNAAEITD 140

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 113
Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 114 PN--AMNAAEITD 124

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 278
Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 279 PN--AMNAAEITD 289

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLV 146
           R R++   YYR   G + V D   R      AR V +   + D   +   ++  NK DL 
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 131
Query: 147 DMWAVSAEDVVE 158
           +  A+SA ++ E
Sbjct: 132 E--AMSAAEITE 141

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           R R++   YYR   G + V D   R      AR V + R   +  +R    ++  NK DL
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGE-AREVMQ-RMLNEDELRNAVWLVFANKQDL 130
Query: 146 VDMWAVSAEDVVE 158
            +  A+SA ++ E
Sbjct: 131 PE--AMSAAEITE 141

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGE-VITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS--SIRIILIGNKSDLV 146
           R R++   YYR   G + V D   R      AR V +   + D   +   ++  NK DL 
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELRNAAWLVFANKQDLP 114
Query: 147 DMWAVSAEDVVE 158
           +  A+SA ++ E
Sbjct: 115 E--AMSAAEITE 124

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++ +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +   V+  RA     + IIL+GNKSDLV
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++    A      F E SA    NV   F  ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++ +     ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 64
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +   V+  RA     + IIL+GNKSDLV
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++    A      F E SA    NV   F  ++++I
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E   ++++  G  +  R++ ++ +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +   V+  RA     + IIL+GNKSDLV
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++    A      F E SA    NV   F  ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSD 144
           + R +   YY+     + V D   R   D +    EEL +   +  +R   +++  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 145 LVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNV 178
           L    A+S  +V E       +++  +   + A NGD +
Sbjct: 130 LPQ--AMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGL 166

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           KV+++G    GK+ IL +F  NE    S  TIG   +   V  N+  +   +WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTSP-TIGSNVE-EIVVKNTHFL---MWDIGGQES 72
Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
            R+  + YY      ++V D   R+        +  + AH D     +LI  NK D+   
Sbjct: 73  LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKG- 131
Query: 149 WAVSAEDVVEFA-----EDQGLFFSEASALNGDNV 178
             ++A ++ ++      +D         AL G+ +
Sbjct: 132 -CMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW 82
           D +FKV+++G+S VGKS +   F   +     +     +   R + ++ +   ++   IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 83  ---DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSIRI 136
              D  G  R   + +         ++V+ +T R+SF  V   +  LRA   H D  + +
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 133
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFA 160
           IL+GNKSDL     VS E+    A
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLA 157

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW 82
           D VFKV+++G+S VGKS +   F   +     +     +   R + ++ +   +I   IW
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 83  ---DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSI 134
              D  G  Q+       A+       ++V+ +T R+SF  V   +  LRA   H D  +
Sbjct: 70  EQGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--L 120
Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFA 160
            +IL+GNKSDL     VS E+    A
Sbjct: 121 PVILVGNKSDLARSREVSLEEGRHLA 146

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIR---IILIGNKSD 144
           + R +   Y++   G + V D   R   D V    +EL R   +  +R   +++  NK D
Sbjct: 76  KIRPLWRHYFQNTQGLIFVVDSNDR---DRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 145 LVDMWAVSAEDVVE 158
           L +  A++A ++ +
Sbjct: 133 LPN--AMNAAEITD 144

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 13/167 (7%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       TI         T+  +  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDI-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
             R+    Y+    G + V D   RQ      R ++ L      +   +LI  NK DL  
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 131
Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+S+  + E  E              SA+ G+N+      LL +I
Sbjct: 132 --ALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDI 176

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  G +
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGLD 57
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR---IILIGNKSDL 145
           + R +   Y++   G + V D   R+  +      E +R  A+  +R   +++  NK DL
Sbjct: 58  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE--ELMRMLAEDELRDAVLLVFANKQDL 115
Query: 146 VDMWAVSAEDVVE 158
            +  A++A ++ +
Sbjct: 116 PN--AMNAAEITD 126

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---IIKAQIW-- 82
           VFKV+++G+S VGKS +   F   +     +     +   R + ++ +   +I   IW  
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 83  -DTAG--QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA---HADSSIRI 136
            D  G  Q+       A+       ++V+ +T R+SF  V   +  LRA   H D  + +
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPV 112
Query: 137 ILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF 182
           IL+GNKSDL     VS E+    A        E SA    N    F
Sbjct: 113 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG   +T    +  K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   Y++   G + V D   R+     A  ++++    +    ++L+  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 148 MWAVS 152
              VS
Sbjct: 145 AMPVS 149

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 25/162 (15%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +K TIG   +T    ++ K +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARGVEELRAHADSSIRIILIGNK 142
             R     YY      + V D T +          H+    EEL+  A     +++  NK
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANK 128
Query: 143 SDLVDMWAVSAEDV------VEFAEDQGLFFSEASALNGDNV 178
            D     A+SA +V      VE  +D+      +SA+ G+ +
Sbjct: 129 QDQPG--ALSASEVSKELNLVEL-KDRSWSIVASSAIKGEGI 167

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       TI         T+  +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDL 145
             R+    Y+    G + V D   RQ      R ++ L      +   +LI  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       TI         T+  +  K  IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDL 145
             R+    Y+    G + V D   RQ      R ++ L      +   +LI  NK DL
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 30  KVVVIGDSAVGKSQILSRF--TKNEFCFDSKSTIGVEFQTRTVTINSKI---IKAQIWDT 84
           K+ ++G++  GK+ +L +   TK        +T+G++ +   + I  K    +   +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS 143
           AG+E + +    +       + VYD++K Q+  D     +  ++A A SS  +IL+G   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 144 DLVD 147
           D+ D
Sbjct: 121 DVSD 124

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 30  KVVVIGDSAVGKSQILSRF--TKNEFCFDSKSTIGVEFQTRTVTINSKIIK---AQIWDT 84
           K+ ++G++  GK+ +L +   TK        +T+G++ +   + I  K  +     +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS 143
           AG+E + +    +       + VYD++K Q+  D     +  ++A A SS  +IL+G   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSP-VILVGTHL 122
Query: 144 DLVD 147
           D+ D
Sbjct: 123 DVSD 126

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ +L +    E    +  TIG  F    V   +  I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVECVQYCN--ISFTVWDVGGQD 72
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLV 146
           R R++   YY    G + V D   R      AR V +   + D   +   ++  NK DL 
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGE-AREVMQRMLNEDELCNAAWLVFANKQDLP 131
Query: 147 DMWAVSAEDVVE 158
           +  A+SA ++ E
Sbjct: 132 E--AMSAAEITE 141

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
           + ++G    GKS +  +F    F  +    +   + +   T++ + +  ++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTP 82
Query: 91  RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS---SIRIILIGNKSDLVD 147
           R     Y   A   +VVY +  RQSFD  +  +E L  HA     SI  +L+GNK D+  
Sbjct: 83  RNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 148 MWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQE 188
              V+  + V  A   G  F E SA L+ ++V   F   ++E
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +  TIG  F   TVT   K +K Q+WD  GQ 
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIR---IILIGNKSD 144
             R     YY      + V D   R   D +     EL A   +  +R   +++  NK D
Sbjct: 58  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 145 L 145
           +
Sbjct: 115 M 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	8e-96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	9e-96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-94
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	6e-94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-94
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	9e-94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	9e-93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	9e-92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-91
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	7e-91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	9e-91
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-91
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-89
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-89
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-89
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-89
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-87
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	4e-86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-85
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-80
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	8e-71
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-70
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-66
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-66
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-64
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-63
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-61
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-59
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-57
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-57
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	4e-57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	6e-57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-56
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-50
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-48
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-47
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-35
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-34
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-33
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-31
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-30
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-30
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-30
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-29
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	5e-17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-15
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	9e-15
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-14
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	8e-14
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-13
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	7e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	8e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	5e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-09
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  279 bits (717), Expect = 2e-97
 Identities = 106/189 (56%), Positives = 137/189 (72%), Gaps = 7/189 (3%)

Query: 9   GTDHRHQQQDKM-------IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI 61
           G+ H H     +         D+ DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTI
Sbjct: 3   GSHHHHHHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 62

Query: 62  GVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR 121
           GVEF TR++ ++ K IKAQIWDTAG ERYRA+TSAYYRGA+GA++VYDI K  ++++V R
Sbjct: 63  GVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122

Query: 122 GVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA 181
            ++ELR HADS+I I+L+GNKSDL  + AV  ++   FAE  GL F E SAL+  NV+ A
Sbjct: 123 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182

Query: 182 FFRLLQEIY 190
           F  +L EIY
Sbjct: 183 FQTILTEIY 191

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  277 bits (712), Expect = 2e-96
 Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 2/192 (1%)

Query: 7   GDGTDHRHQQQDKM--IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE 64
           G    H H     +    +  ++VFKVV+IG+S VGK+ +LSRFT+NEF  DS++TIGVE
Sbjct: 2   GSSHHHHHHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVE 61

Query: 65  FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE 124
           F TRTV + +  +KAQIWDTAG ERYRA+TSAYYRGA+GA++V+D+TK Q++  V R ++
Sbjct: 62  FSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLK 121

Query: 125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184
           EL  HA+++I ++L+GNKSDL     V  E+   FAE+ GL F E SAL+  NV+ AF  
Sbjct: 122 ELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181

Query: 185 LLQEIYALSKKE 196
           +L+EI+A   K+
Sbjct: 182 VLKEIFAKVSKQ 193

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  277 bits (711), Expect = 2e-96
 Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 1/177 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           +  D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + +  K +K QIW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQER+R+VT +YYRGA GA++VYDIT R++++ +   + + R  A  +I IIL GNK
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 124

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELE 198
            DL     V+  +   FA++  L F E SAL G+NV+ AF +  ++I   +   EL+
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  277 bits (712), Expect = 2e-96
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 3/195 (1%)

Query: 7   GDGTDHRHQQQDKM--IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE 64
           G    H H     +       D++FK +VIG +  GKS +L +F +N+F  DS  TIGVE
Sbjct: 2   GSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE 61

Query: 65  FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE 124
           F +R V +  K +K QIWDTAGQER+R+VT +YYRGA GA++VYDIT R++++ +A  + 
Sbjct: 62  FGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT 121

Query: 125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184
           + R  A  +I +IL GNK DL     V+  +   FA++  L F E SAL G+NV+ AF +
Sbjct: 122 DARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181

Query: 185 LLQEIYA-LSKKELE 198
             + I   +   EL+
Sbjct: 182 CARTILNKIDSGELD 196

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  276 bits (709), Expect = 3e-96
 Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 1/190 (0%)

Query: 9   GTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR 68
           G+ H H      +  +  Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R
Sbjct: 2   GSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR 61

Query: 69  TVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA 128
            V I+ K IK QIWDTAGQE +R++T +YYRGA GA++VYDIT+R++F+H+   +E+ R 
Sbjct: 62  MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121

Query: 129 HADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
           H+ S++ I+LIGNKSDL     V  E+   FA + GL F E SA    NV+ AF    +E
Sbjct: 122 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181

Query: 189 IYA-LSKKEL 197
           IY  + +   
Sbjct: 182 IYRKIQQGLF 191

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  276 bits (707), Expect = 8e-96
 Identities = 103/179 (57%), Positives = 135/179 (75%), Gaps = 1/179 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 3   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GNKSDL
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELECGNGK 203
             + AV  ++   FAE   L F E SAL+  NV+ AF  +L EIY  +S+K++      
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  275 bits (705), Expect = 9e-96
 Identities = 83/169 (49%), Positives = 117/169 (69%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           P    Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++ + IK QI
Sbjct: 9   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 68

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+RAVT +YYRGA GA++VYDIT+R +++H++  + + R   + +  IILIGN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K+DL     V+ E+  +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  275 bits (705), Expect = 1e-95
 Identities = 68/171 (39%), Positives = 107/171 (62%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
               K+V++GD   GKS ++ RF K++F    +STIG  F ++T+ +N   +K +IWDTA
Sbjct: 10  SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERY ++   YYRGA  A++V+D+T + SF+   + V+EL+A  + ++ + L GNKSDL
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           +D   V+AED   +A++ GLFF E SA    NV   F+ + + +  +   E
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  276 bits (708), Expect = 2e-95
 Identities = 104/183 (56%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
               D +FK+V+IGDS VGKS +LSRFTKNEF  DSKSTIGVEF TRT+ I  K IKAQI
Sbjct: 7   GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQI 66

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQERYRA+TSAYYRGA+GA++VYDI+K  S+++    + ELR +AD ++ + LIGN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELECG 200
           KSDL  + AV  E+   FA++  L F+E SALN +NVD AF  L+  IY  +SK +++ G
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

Query: 201 NGK 203
           +  
Sbjct: 187 DSS 189

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  273 bits (701), Expect = 7e-95
 Identities = 72/190 (37%), Positives = 105/190 (55%)

Query: 7   GDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ 66
           G    H H     +         KV ++GD+ VGKS I+ RF ++ F  +   TIG  F 
Sbjct: 2   GSSHHHHHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM 61

Query: 67  TRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL 126
           T+TV   +++ K  IWDTAGQER+ ++   YYRG+  AV+VYDITK+ SF  + + V+EL
Sbjct: 62  TKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121

Query: 127 RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
           + H   +I + + GNK DL D+  V  +D  E+AE  G    E SA N  N++  F  + 
Sbjct: 122 KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181

Query: 187 QEIYALSKKE 196
           ++I  L   E
Sbjct: 182 RQIPPLDPHE 191

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  272 bits (697), Expect = 3e-94
 Identities = 77/182 (42%), Positives = 114/182 (62%)

Query: 9   GTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR 68
            + H H     ++P   DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +
Sbjct: 3   SSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 62

Query: 69  TVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRA 128
           TV  + K IK QIWDTAGQERYR +T+AYYRGA+G +++YDI  ++SF  V     +++ 
Sbjct: 63  TVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122

Query: 129 HADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
           ++  + ++IL+GNK DL D   V AED    A+D G  F EASA    NV   F RL+  
Sbjct: 123 YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182

Query: 189 IY 190
           I 
Sbjct: 183 IC 184

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  271 bits (696), Expect = 6e-94
 Identities = 77/182 (42%), Positives = 122/182 (67%), Gaps = 1/182 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
            + DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++ K +K QIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V   ++E+  +A S++  +L+GNK
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELECGN 201
            DL D   V  +   EFA+   + F E SAL+  NV+ AF  + ++I   +S++ L    
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182

Query: 202 GK 203
            K
Sbjct: 183 QK 184

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  271 bits (694), Expect = 8e-94
 Identities = 78/182 (42%), Positives = 115/182 (63%), Gaps = 1/182 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
            + DY+FK+++IGDS VGKS +L RF  + +     STIGV+F+ RT+ ++ K IK QIW
Sbjct: 11  PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS+YYRGA G +VVYD+T ++SF++V + ++E+  +A  ++  +L+GNK
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNK 130

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELECGN 201
            DL     V      EFA+  G+ F E SA N  NV+ +F  +  EI   +       G 
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 190

Query: 202 GK 203
            K
Sbjct: 191 EK 192

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  269 bits (691), Expect = 9e-94
 Identities = 60/165 (36%), Positives = 91/165 (55%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
            Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I  K +   IWDTA
Sbjct: 4   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+ A+   YYR + GA++VYDIT   SF  V   V+ELR    + I + ++GNK DL
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
                VS ++   +AE  G      SA     ++  F  L + + 
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  270 bits (693), Expect = 1e-93
 Identities = 71/196 (36%), Positives = 115/196 (58%), Gaps = 5/196 (2%)

Query: 8   DGTDHRHQQQDKMIP----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV 63
             + H H     ++P    +  D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV
Sbjct: 2   GSSHHHHHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV 61

Query: 64  EFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGV 123
           +F  +TV IN + +K QIWDTAGQER+R++T +YYR A   ++ YDIT  +SF  +   +
Sbjct: 62  DFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL 121

Query: 124 EELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF 183
            E+  +A + +  +L+GNK DL +   VS +   EF+E Q +++ E SA   DNV+  F 
Sbjct: 122 REIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181

Query: 184 RLLQEIYA-LSKKELE 198
            L   + +   +  L 
Sbjct: 182 DLACRLISEARQNTLV 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  269 bits (689), Expect = 3e-93
 Identities = 79/178 (44%), Positives = 117/178 (65%), Gaps = 1/178 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++ K IK QIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++   +  +  HA + +  +++GNK D+
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA-LSKKELECGNG 202
            D   VS E   + A D G+ F E SA    NV+ AFF L ++I A + K       G
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAAG 183

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  268 bits (688), Expect = 3e-93
 Identities = 66/162 (40%), Positives = 95/162 (58%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV   +++ K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +   V ELR H   SI + + GNK DL D+
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
             V   D  ++A+     F E SA N  N++  F  + + I 
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  269 bits (690), Expect = 3e-93
 Identities = 79/196 (40%), Positives = 117/196 (59%), Gaps = 9/196 (4%)

Query: 5   MSGDGTDHRHQQQDKMI---------PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF 55
           M      H H   + +            + DY+FK+++IGDS VGKS +L RF  + +  
Sbjct: 1   MGSSHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE 60

Query: 56  DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS 115
              STIGV+F+ RT+ ++ K IK QIWDTAGQER+R +TS+YYRGA G +VVYD+T ++S
Sbjct: 61  SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120

Query: 116 FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG 175
           F++V + ++E+  +A  ++  +L+GNK DL     V      EFA+  G+ F E SA N 
Sbjct: 121 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180

Query: 176 DNVDTAFFRLLQEIYA 191
            NV+ +F  +  EI  
Sbjct: 181 TNVEQSFMTMAAEIKK 196

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  267 bits (685), Expect = 9e-93
 Identities = 71/164 (43%), Positives = 102/164 (62%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
             FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QERY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           +  AV  ++   +A+D  L F E SA    NV+  F  + +++ 
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  267 bits (684), Expect = 2e-92
 Identities = 71/189 (37%), Positives = 115/189 (60%), Gaps = 5/189 (2%)

Query: 8   DGTDHRHQQQDKMIP----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGV 63
             + H H     ++P       D+  +V++IG   VGK+ ++ RFT + FC   KST+GV
Sbjct: 2   GSSHHHHHHSSGLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV 61

Query: 64  EFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGV 123
           +F+ +TV +  K I+ QIWDTAGQER+ ++TSAYYR A G ++VYDITK+++FD + + +
Sbjct: 62  DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 121

Query: 124 EELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF 182
           + +  +A     ++L+GNK D      ++ +   +FA+   G+ F EASA +  NVD  F
Sbjct: 122 KMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

Query: 183 FRLLQEIYA 191
            +L+ +I  
Sbjct: 182 LKLVDDILK 190

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  267 bits (685), Expect = 3e-92
 Identities = 71/181 (39%), Positives = 113/181 (62%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
               DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAG ERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ ++  + +++L+GN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGN 201
           K D+ D   VS+E   + A+  G  F EASA +  NV   F RL+  I     + L+  +
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 202 G 202
            
Sbjct: 182 P 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  266 bits (682), Expect = 4e-92
 Identities = 71/181 (39%), Positives = 111/181 (61%)

Query: 10  TDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRT 69
             H   +++       DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T
Sbjct: 5   HHHSSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT 64

Query: 70  VTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH 129
           V  + K +K QIWDTAGQERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ +
Sbjct: 65  VYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY 124

Query: 130 ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +  + ++IL+GNK D+ +   V  E     AE  G  F EASA    +V  AF RL+  I
Sbjct: 125 SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

Query: 190 Y 190
            
Sbjct: 185 C 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  266 bits (682), Expect = 7e-92
 Identities = 76/171 (44%), Positives = 110/171 (64%), Gaps = 1/171 (0%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
            ++ D++FK+V++GD++VGK+ ++ RF    F     STIGV+F  +T+ I  K +K QI
Sbjct: 23  DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+R +T +YYR A GA++ YDITKR SF  V   +E++R +A S+I  +LIGN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142

Query: 142 KSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYA 191
           KSDL ++  VS  +    AE    L   E SA +  NV+ AF R+  E+  
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  265 bits (679), Expect = 9e-92
 Identities = 60/167 (35%), Positives = 103/167 (61%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
              FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++  +Y R +  AVVVYDIT   SF   ++ ++++R    S + I+L+GNK+DL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL 192
            D   VS E+    A++  + F E SA  G NV   F R+   +  +
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 178

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  263 bits (674), Expect = 6e-91
 Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI-IKAQIWDT 84
               K+VV+GD A GK+ + + F +  F    K TIG++F  R +T+   + +  QIWD 
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR---GVEELRAHADSSIRIILIGN 141
            GQ     +   Y  GA G ++VYDIT  QSF+++      V+++   +++   + L+GN
Sbjct: 64  GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           K DL  M  +  E  + F ++ G      SA  GD+V   F ++  EI  +   +
Sbjct: 124 KIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  262 bits (673), Expect = 7e-91
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 1/176 (0%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQ 80
            D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++   +K Q
Sbjct: 4   VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQ 63

Query: 81  IWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG 140
           +WDTAGQER+R+VT AYYR A   +++YD+T + SFD++   + E+  +A   + ++L+G
Sbjct: 64  MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123

Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           NK D      V  ED  + A++ GL F E SA  G NVD AF  + +E+   S K 
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  262 bits (673), Expect = 7e-91
 Identities = 76/176 (43%), Positives = 106/176 (60%), Gaps = 1/176 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
              D++FK+++IGDS VGKS +L RF  N F     +TIGV+F+ RTV IN + +K QIW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +TS YYRG  G +VVYD+T  +SF +V R + E+  + D  +  IL+GNK
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNK 122

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
           +D  +   V  ED  +FA   G+   E SA    NV+  F  + + +    K  L 
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLA 178

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  263 bits (674), Expect = 9e-91
 Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 11/196 (5%)

Query: 7   GDGTDHRHQ-----QQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI 61
           G    H H       +           +K+V+ GD+AVGKS  L R  KNEF  +  +T+
Sbjct: 2   GSSHHHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61

Query: 62  GVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR 121
           GV+FQ +T+ ++ +    Q+WDTAGQER+R++  +Y+R A G +++YD+T  +SF ++  
Sbjct: 62  GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121

Query: 122 GVEELRAHADSSIRIILIGNKSDLVDMW------AVSAEDVVEFAEDQGLFFSEASALNG 175
            V+ +   A  ++ I+L+GNK+D+ D         V      + A   G  F E SA +G
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181

Query: 176 DNVDTAFFRLLQEIYA 191
            N+  A   L +E+  
Sbjct: 182 SNIVEAVLHLAREVKK 197

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  263 bits (675), Expect = 9e-91
 Identities = 59/171 (34%), Positives = 102/171 (59%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
              FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + ++ Q+WDTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           G ER+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
            D   VS E+    A++  + F E SA  G NV   F R+   +  +   +
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  261 bits (668), Expect = 1e-89
 Identities = 76/200 (38%), Positives = 122/200 (61%), Gaps = 6/200 (3%)

Query: 5   MSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE 64
           MSG     R            D + K+++IGDS VGKS +L RF +++F     +TIG++
Sbjct: 1   MSGL----RTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID 56

Query: 65  FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE 124
           F+ +TV IN K +K Q+WDTAGQER+R +T+AYYRGA+G ++VYD+T  ++F ++ +  +
Sbjct: 57  FKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFK 116

Query: 125 ELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR 184
            +  HA+   +++L+GNKSD+ +   V+A+     A++ G+ F E+SA N DNV+  FF 
Sbjct: 117 TVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175

Query: 185 LLQEIYA-LSKKELECGNGK 203
           L + I   +   +L      
Sbjct: 176 LAKLIQEKIDSNKLVGVGNG 195

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  261 bits (668), Expect = 1e-89
 Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 13/205 (6%)

Query: 7   GDGTDHRHQQQDKMIP--DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE 64
           G    H H     +       DY+ K++ +GDS VGK+  L R+T N+F     +T+G++
Sbjct: 2   GSSHHHHHHSSGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGID 61

Query: 65  FQTRTVTINSKI----------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ 114
           F+ + V  N++           +  Q+WDTAGQER+R++T+A++R A+G ++++D+T +Q
Sbjct: 62  FREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ 121

Query: 115 SFDHVARGVEELRAHADS-SIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL 173
           SF +V   + +L+A+A   +  I+LIGNK+DL D   V+     E A+  G+ + E SA 
Sbjct: 122 SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181

Query: 174 NGDNVDTAFFRLLQEIYALSKKELE 198
            G NV+ A   LL  I    ++ +E
Sbjct: 182 TGQNVEKAVETLLDLIMKRMEQCVE 206

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  260 bits (666), Expect = 2e-89
 Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 11/190 (5%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----- 74
           M     DY+ K + +GDS VGK+ +L ++T  +F     +T+G++F+ + V   +     
Sbjct: 3   MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 75  -----KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH 129
                + I  Q+WDTAG ER+R++T+A++R A+G ++++D+T  QSF +V   + +L+ H
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 130 ADS-SIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE 188
           A S +  I+L GNKSDL D  AV  E+  E AE  G+ + E SA NG N+  A   LL  
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182

Query: 189 IYALSKKELE 198
           I    ++ ++
Sbjct: 183 IMKRMERSVD 192

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  258 bits (662), Expect = 2e-89
 Identities = 73/166 (43%), Positives = 115/166 (69%), Gaps = 1/166 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  ++F ++ +  + +  HA+   +++L+GNKSD+
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
            +   V+A+     A++ G+ F E+SA N DNV+  FF L + I  
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  258 bits (661), Expect = 3e-89
 Identities = 60/166 (36%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           +   K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQE + A+T AYYRGA   V+V+  T R+SF+ ++   E++ A     I   L+ NK DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
           +D   +  E+    A+   L F   S     NV   F  L ++   
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  258 bits (662), Expect = 6e-89
 Identities = 65/169 (38%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           + +    K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++    K  IW
Sbjct: 10  EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGN 141
           DTAGQER+R +T +YYRGA G ++VYD+T+R +F  +   + EL  +   + I  +L+GN
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K D  +   V   + ++FA    + F EASA   D V  AF  L+++I 
Sbjct: 130 KIDKENR-EVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  257 bits (660), Expect = 9e-89
 Identities = 67/186 (36%), Positives = 102/186 (54%), Gaps = 6/186 (3%)

Query: 12  HRHQQQDKMIPDK-IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV 70
           H H     ++P      +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V
Sbjct: 3   HHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAV 62

Query: 71  TINSKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH 129
            I+ + IK Q+WDTAGQER+R ++   YYR     V VYD+T   SF  +   +EE + H
Sbjct: 63  DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122

Query: 130 ADSS-IRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL---NGDNVDTAFFRL 185
             ++ I  IL+GNK DL     V  +   +FA+   +   E SA    + D+V+  F  L
Sbjct: 123 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

Query: 186 LQEIYA 191
             ++ +
Sbjct: 183 AHKLKS 188

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  254 bits (651), Expect = 6e-87
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 1/170 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE-FQTRTVTINSKIIKAQI 81
           ++ +  +K+ +IGD  VGK+  ++R     F  +  +T+G        +     +IK  +
Sbjct: 6   ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQE+   +   YY GA GA++ +D+T R +  ++AR V+E +A   +   I++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
           K D+ +   +S + V+E  + +   + E SA    N    F  L +    
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  254 bits (650), Expect = 6e-87
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 10/204 (4%)

Query: 9   GTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTK--NEFCFDSKSTIGVEFQ 66
           G     +++ K I        KV V+G++ VGKS ++S FT   ++F  D   T GVE  
Sbjct: 1   GAASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVV 60

Query: 67  TRTVTINSKIIKAQIW--DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE 124
              VTI    +  +++  DTAG + Y+   S Y+ G   A++V+D++  +SF+      E
Sbjct: 61  VAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120

Query: 125 ELR---AHADSSIRIILIGNKSDLVDM-WAVSAEDVVEFAEDQGLFFSEASA-LNGDNVD 179
            L+      +  +R +L+ NK+DL      V  +   ++A    L F + SA   G + D
Sbjct: 121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

Query: 180 TAFFRLLQEIYAL-SKKELECGNG 202
             F  +    Y     K     + 
Sbjct: 181 APFLSIATTFYRNYEDKVAAFQDA 204

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  250 bits (642), Expect = 4e-86
 Identities = 56/171 (32%), Positives = 97/171 (56%), Gaps = 6/171 (3%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
             +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++   +  QIWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGN 141
           GQER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GN
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 124

Query: 142 KSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYA 191
           K D+ +   VS E+   +  D G   + E SA +  NV  AF   ++ + A
Sbjct: 125 KIDISER-QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  249 bits (639), Expect = 3e-85
 Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           M   K   + KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  
Sbjct: 1   MTSRK-KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59

Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIR 135
           QIWDTAGQER++++  A+YRGA   V+V+D+T   +F  +    +E    A      +  
Sbjct: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119

Query: 136 IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
            +++GNK DL +    +            + + E SA    NV+ AF  + +       +
Sbjct: 120 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE 179

Query: 196 E 196
            
Sbjct: 180 V 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  241 bits (617), Expect = 2e-82
 Identities = 60/176 (34%), Positives = 101/176 (57%), Gaps = 7/176 (3%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQI 81
            +   + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ VT++  K+   Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD----SSIRII 137
           WDTAGQER++++  A+YRGA   V+VYD+T   SF+++    +E   HA+     +   +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 138 LIGNKSDLVDM-WAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYA 191
           ++GNK D  +    VS +   E A+  G +     SA N  NVDTAF  + +    
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  236 bits (605), Expect = 7e-80
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
               +    FK+V++GD   GK+  + R    EF     +T+GVE        N   IK 
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66

Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI 139
            +WDTAGQE++  +   YY  A  A++++D+T R ++ +V     +L    + +I I+L 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLC 125

Query: 140 GNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
           GNK D+ D         + F   + L + + SA +  N +  F  L +++      E 
Sbjct: 126 GNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 181

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  230 bits (588), Expect = 1e-77
 Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 40/202 (19%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA------ 79
              +K V++G+S+VGKS I+ R TK+ F  ++ +TIG  F T  V +N   IK       
Sbjct: 5   KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64

Query: 80  -------------------------------QIWDTAGQERYRAVTSAYYRGALGAVVVY 108
                                           IWDTAGQERY ++   YYRGA  A+VV+
Sbjct: 65  NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124

Query: 109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFS 168
           DI+   + D     V +L+  ++    IIL+ NK D      V   +V ++A+D  L F 
Sbjct: 125 DISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDKNKF-QVDILEVQKYAQDNNLLFI 181

Query: 169 EASALNGDNVDTAFFRLLQEIY 190
           + SA  G N+   F+ L +EIY
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEIY 203

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  220 bits (563), Expect = 3e-74
 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+ ++   YYR A  A+VVYD+TK QSF      V+EL   A   I I L+GNK D +  
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123

Query: 149 W---AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
                V+ E+  + AE++GL F E SA  G+NV+  F  + ++I  
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  212 bits (543), Expect = 8e-71
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 5/184 (2%)

Query: 12  HRHQQ---QDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR 68
           H H     ++     + D +FKV+++G+S VGKS +   F   +     +     +   R
Sbjct: 4   HHHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYER 63

Query: 69  TVTINSKIIKAQIWDTAGQERYRAV-TSAYYRGALGAVVVYDITKRQSFDHVARGVEEL- 126
            + ++ + +   ++D   Q            +     ++V+ +T R+SF  V   +  L 
Sbjct: 64  RIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 123

Query: 127 RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
                  + +IL+GNKSDL     VS E+    A        E SA    N    F   +
Sbjct: 124 AGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

Query: 187 QEIY 190
           ++I 
Sbjct: 184 RQIR 187

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  210 bits (536), Expect = 4e-70
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 2/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           VFKV+++G+S VGKS +   F   +     +     +   R + ++ + +   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 88  ERYRAV-TSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIRIILIGNKSDL 145
                       +     ++V+ +T R+SF  V   +  L        + +IL+GNKSDL
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                VS E+    A        E SA    N    F   +++I
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  203 bits (519), Expect = 3e-67
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 2/176 (1%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
                 + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDI 70

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIG 140
            DTAGQE Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+G
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           NKSDL D   VS E+    AE   + + E SA    NVD  FF L++EI A   ++
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  201 bits (513), Expect = 4e-66
 Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 2/179 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
             + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTA
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTA 70

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSD 144
           GQE Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSD
Sbjct: 71  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
           L D   VS E+    AE   + + E SA    NVD  FF L++EI A   ++ +  NGK
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK 189

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  199 bits (508), Expect = 7e-66
 Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 2/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + KV+++G   VGKS +  +F  +EF  D + T    ++ + V ++ + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLV 146
           E Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           D   VS E+    A+   + + E SA    NVD  FF L++EI 
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  196 bits (501), Expect = 1e-64
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +++VV++GD  VGK+ + S F   +   D    +G +   RT+T++ +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 88  ERYRAVTS--AYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIRIILIGNKSD 144
           E+     S  +  +G    V+VY I  R SF+  +    +L R H    + IIL+GNK+D
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           L     VS E+    A      F E SA    NV   F  +++++ 
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  196 bits (499), Expect = 2e-64
 Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEF--CFDSKSTIGVEFQTRTVTINSK---IIKAQIWD 83
            K++++G++  GK+ +L +  K +        +T+G++ +   + I  K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 84  TAGQERYRAVTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNK 142
            AG+E + +    +       + VYD++K Q+  D +   +  ++A A SS  +IL+G  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 143 SDLVD---MWAVSAEDVVEFAEDQGL-FFSEASALNGDNVDTAFFRLLQEIY 190
            D+ D     A  ++   E    +G     +   +N      A  +L + I 
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  196 bits (500), Expect = 3e-64
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 8   DGTDHRHQQ----QDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIG 62
            GT++ + Q       +  +  +  ++VV+IG+  VGKS + + F       DS    +G
Sbjct: 13  LGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG 72

Query: 63  VEFQTRTVTINSK---IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV 119
            +   RT+ ++ +   II   +W+  G+  +  +     +     ++VY IT R SF+  
Sbjct: 73  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 130

Query: 120 ARGVEEL-RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV 178
           +    +L RA     I IIL+GNKSDLV    VS  +    A      F E SA    NV
Sbjct: 131 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190

Query: 179 DTAFFRLLQEIY 190
              F  +++++ 
Sbjct: 191 KELFEGIVRQVR 202

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  195 bits (498), Expect = 7e-64
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 5/190 (2%)

Query: 11  DHRHQQQDKMIPDK---IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQT 67
            H H    + +  +   +    KVV++G   VGK+ +  +F + EF      T+   + +
Sbjct: 4   HHHHSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-S 62

Query: 68  RTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-L 126
           + VT+        + DTAGQ+ Y  +  ++  G  G V+VY +T   SF  +    ++  
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122

Query: 127 RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL 186
             H  + + ++L+GNK+DL     V A +  + AE  G  F E+SA         F +++
Sbjct: 123 EGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182

Query: 187 QEIYALSKKE 196
           QEI  +    
Sbjct: 183 QEIARVENSY 192

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  193 bits (493), Expect = 2e-63
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 20  MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKA 79
           M P       K+VV+G   VGKS +  +F ++ F  D   TI   + T+  +++    + 
Sbjct: 2   MDPPP-SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARL 59

Query: 80  QIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIIL 138
            I DTAGQE + A+   Y R   G ++V+ I  RQSF+ V +   + LR        ++L
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 139 IGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
           +GNK+DL     V   +   F     + + EASA    NVD AF +L++ +    ++EL
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQEL 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  187 bits (478), Expect = 5e-61
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 7/167 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSK---IIKAQIWDT 84
           ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +   II   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL-RAHADSSIRIILIGNKS 143
            G+  +  +     +     ++VY IT R SF+  +    +L RA     I IIL+GNKS
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           DLV    VS  +    A      F E SA    NV   F  +++++ 
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  186 bits (475), Expect = 6e-61
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E         G  +  R++ ++ +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +    +  RA     + IIL+GNKSDLV
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               VS ++    A      F E SA    NV   F  ++++I
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  183 bits (466), Expect = 3e-59
 Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
              K+ ++G  +VGKS +  +F + +F      TI   F T+ +T+N +    Q+ DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAG 63

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDL 145
           Q+ Y      Y     G ++VY +T  +SF+ +     + L       I I+L+GNK DL
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
                +S E+    AE     F E+SA         F R++ E     K +  C  GK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE---KMDGACSQGK 178

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  178 bits (454), Expect = 1e-57
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++S     +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G ++VY +  +QSF  +    ++ +R      + +IL+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              VS+ +    AE+ G  F E SA +   VD  F  +++++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  177 bits (451), Expect = 3e-57
 Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   +  + V I+ +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   DS  + ++L+GNKSDL  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V +    + A   G+ + E SA     V+ AF+ L++EI
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  177 bits (451), Expect = 4e-57
 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   +  + ++ +  I   QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILIGNKSDLV 146
           ++ A+           ++VY IT RQS + +    E++         I I+L+GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               V + +    A      F E SA    NV   F  LL   
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  176 bits (450), Expect = 6e-57
 Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 3/170 (1%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
           P +    +K+VV+GD  VGKS +  +F +  F  D   TI   +  +   I+++     +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDV 70

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIG 140
            DTAGQE + A+   Y R   G ++VY +T + SF+HV R  + +    D  S  +IL+ 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130

Query: 141 NKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           NK DL+ +  V+ +   E A    + + E SA     NVD  F  L++ I
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  175 bits (446), Expect = 3e-56
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 11  DHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV 70
            H H    + +  +    +K+VV+G   VGKS +  +  +N F  +   TI   +  + V
Sbjct: 4   HHHHSSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQV 62

Query: 71  TINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA 130
            I+ +     I DTAGQE Y A+   Y R   G + V+ I   +SF  +    E+++   
Sbjct: 63  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK 122

Query: 131 DS-SIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           DS  + ++L+GNK DL     V  +   E A+  G+ F E SA     V+ AF+ L++EI
Sbjct: 123 DSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

Query: 190 YALSKKEL 197
                K+L
Sbjct: 182 RQYRMKKL 189

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  174 bits (443), Expect = 4e-56
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI   ++ + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E+ LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 148 MWAVSAEDVVEFA-EDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              V  E     A +     F E+SA +  NV+  F+ L+++I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  174 bits (443), Expect = 8e-56
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V I+ +     I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ +    E+  R      + ++L+GNK DL  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELECGNGK 203
              V  +   + A   G+ F E SA     VD AF+ L++EI    +K  + G  K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKK 178

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  174 bits (443), Expect = 1e-55
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
              ++VVV G   VGKS ++ RF K  F      TI   +  + ++ +  +   QI DT 
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTT 64

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR--AHADSSIRIILIGNKS 143
           G  ++ A+           ++V+ +T +QS + +    + +     +   I ++L+GNK 
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D      V   +    A++    F E SA    NV   F  LL   
Sbjct: 125 DETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE 169

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  173 bits (441), Expect = 2e-55
 Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 12  HRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVT 71
           H H    + +  +      + ++G    GKS +  +F    F  +    +   + +   T
Sbjct: 5   HHHSSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEET 63

Query: 72  INSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA- 130
           ++ + +  ++ DTA  +  R     Y   A   +VVY +  RQSFD  +  +E L  HA 
Sbjct: 64  VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK 122

Query: 131 --DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQ 187
               SI  +L+GNK D+     V+  + V  A   G  F E SA L+ ++V   F   ++
Sbjct: 123 ETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

Query: 188 EI 189
           E 
Sbjct: 183 EA 184

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  173 bits (440), Expect = 3e-55
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
               K+ + G + VGKS ++ RF    F ++   T+   +     TI+ +++  +I DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTA 84

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSD 144
           GQE        + R   G V+VYDIT R SF+ V              ++ +IL+GNK+D
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDTAFFRLLQEI 189
           L     VS E+  + A +    F E SA     N+   F+ L +E+
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  168 bits (427), Expect = 5e-50
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 12/187 (6%)

Query: 14  HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI- 72
            + + K          KV +IGD   GK+ +L +     F      T G+   T+     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 73  -------NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE 125
                    K      WD  GQE   A    +   +   +++ D     +  +    +  
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 126 LRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL 185
           +  +   S  +I++ NK D    + +  + + E        F   S  NGD V++    L
Sbjct: 144 IEKYGGKSP-VIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202

Query: 186 LQEIYAL 192
              +   
Sbjct: 203 KSAVLHP 209

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  153 bits (389), Expect = 9e-48
 Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 11/171 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++G+ + GKS ++ R+    +    +S  G  F  + + ++ +     I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDLVD 147
             +     +       V V+ +    SF  V      L +  ++S + ++L+G +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 148 MW--AVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYALSKK 195
                +      + + D     + E  A  G NV+  F  + Q++ AL KK
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  152 bits (387), Expect = 2e-47
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            ++ V+GD+  GKS ++ RF    +    + T   ++  + + ++ +     I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE---LRAHADSSIRIILIG--NKS 143
             +     +   A   + V+ +    SF  V+R   +   LR      + + L+G  ++ 
Sbjct: 66  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120

Query: 144 DLVDMWAVSAEDVVEF-AEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
                  V         A+ +   + E  A  G NVD  F  + Q++  L K++
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  131 bits (332), Expect = 5e-39
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 22  PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI 81
            +      K+VV+GD AVGK+ +L  F+K E       T+   F    +   ++     +
Sbjct: 17  IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHL 75

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIG 140
           WDTAGQE Y  +    Y  +   ++ + +  R SFD+++     E++ + D + + +L+G
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVG 134

Query: 141 NKSDLVD--MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
            K DL       V+ ++  +  +  G   + EAS++    ++  F
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  122 bits (309), Expect = 2e-35
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 20/192 (10%)

Query: 9   GTDHRHQQQD----KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVE 64
           G+ H H                   K+V++GD A GK+ +L  F+K++F      T+  E
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-E 60

Query: 65  FQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGV 123
                + ++ K ++  +WDTAGQE Y  +    Y      ++ + I    S +++  +  
Sbjct: 61  NYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 120

Query: 124 EELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGLF-FSEA 170
            E++     ++ IIL+GNK DL                 V +E+  + A     F + E 
Sbjct: 121 PEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179

Query: 171 SALNGDNVDTAF 182
           SA   + V   F
Sbjct: 180 SAKTKEGVREVF 191

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  119 bits (301), Expect = 1e-34
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 14/166 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K V +GD AVGK+ +L  +T N F  D   T+   F    V +N   +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    YRGA   ++ + +  + S+++V+ + + EL+ +A   + I+L+G K DL D
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRD 126

Query: 148 ----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                        ++     E  +  G   + E S+ + +NV   F
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  119 bits (300), Expect = 3e-34
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 16/168 (9%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +    Y      ++ + +    SF++V A+   E+R H   +  IIL+G K DL D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148

Query: 148 ------------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                       +  ++    +  A++ G   + E SAL    + T F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  118 bits (297), Expect = 1e-33
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 16/168 (9%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KVV++GD   GK+ +L  F    F      T+   +    + +  K +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD 147
            Y  +   +Y  A   ++ +D+T   SFD++  R   E+       + II++G K+DL  
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRK 152

Query: 148 ------------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                       +  V+     E A   G   + E SA   DNV   F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  117 bits (295), Expect = 3e-33
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 26/192 (13%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEF-------CFDSKSTIGVEFQTRTVTINSKIIKAQI 81
            K V +GD AVGK+ +L  +T N+F        FD+ S          V ++ +I+   +
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--------NVAVDGQIVNLGL 61

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIG 140
           WDTAGQE Y  +    YRGA   V+ + +  + S+++V  + + ELR  A  ++ I+L+G
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120

Query: 141 NKSDLVD--------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEIYA 191
            K DL D           +++    E  +  G   + E S+    NV   F   ++ +  
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

Query: 192 LSKKELECGNGK 203
             +++      K
Sbjct: 181 PPRRKEVPRRRK 192

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  117 bits (294), Expect = 4e-33
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GD A GK+ +L  F+K+EF      T+   +    + ++ K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y      ++ + +    S +++    V E++     ++ IIL+ NK DL   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144

Query: 148 -----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                         V  +D    A     + + E SA   + V   F
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  114 bits (287), Expect = 3e-32
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 26/197 (13%)

Query: 9   GTDHRHQQQD--------KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
           G+ H H             M P++ +   K+VV+GDS  GK+ +L  F K+ F  +   T
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMDPNQ-NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT 60

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV- 119
           +   +   +  I+++ I+  +WDT+G   Y  V    Y  +   ++ +DI++ ++ D V 
Sbjct: 61  VFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 119

Query: 120 ARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGLF- 166
            +   E++     + +++L+G KSDL                 VS +     A+  G   
Sbjct: 120 KKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178

Query: 167 FSEASALNG-DNVDTAF 182
           + E SAL   ++V   F
Sbjct: 179 YIECSALQSENSVRDIF 195

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  111 bits (278), Expect = 5e-31
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
           Y  +    Y     +++ + +    SF++V A+   E+R H   +  IIL+G K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD 124

Query: 148 -----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                      +  ++    +  A++ G   + E SAL    + T F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  109 bits (275), Expect = 2e-30
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 17  QDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI 76
           +  M       + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+  K 
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 77  IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIR 135
               ++DTAGQE Y  +    Y      ++ + +    SF +V    V EL+ +A  ++ 
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVP 124

Query: 136 IILIGNKSDLVD------------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
            +LIG + DL D               +  E   + A++ G   + E SAL    + T F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  109 bits (275), Expect = 2e-30
 Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 17/185 (9%)

Query: 13  RHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI 72
            +       P  +    K+V++GD   GK+ +L    K+ +      T+   +    +  
Sbjct: 12  ENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLET 70

Query: 73  NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHAD 131
             + ++  +WDT+G   Y  V    Y  +   ++ +DI++ ++ D    +   E+  +  
Sbjct: 71  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP 130

Query: 132 SSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGLF-FSEASALNG-DN 177
            S R++LIG K+DL                 +S E     A+  G   + E SA     +
Sbjct: 131 -STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189

Query: 178 VDTAF 182
           + + F
Sbjct: 190 IHSIF 194

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  109 bits (273), Expect = 3e-30
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 17/168 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+   +   +  I+++ I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM 148
           Y  V    Y  +   ++ +DI++ ++ D V  +   E++     + +++L+G KSDL   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTD 126

Query: 149 WA------------VSAEDVVEFAEDQGLF-FSEASALNG-DNVDTAF 182
            +            VS +     A+  G   + E SAL   ++V   F
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  107 bits (270), Expect = 1e-29
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 16/167 (9%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K V++GD AVGK+ ++  +T N +  +   T   +  +  V+++ + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVD- 147
           +  +    Y      ++ + +    SF +V  + V E+R H      IIL+G +SDL + 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRED 139

Query: 148 -----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAF 182
                         V  E     AE+     + E SAL   N+   F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 90.4 bits (224), Expect = 2e-22
 Identities = 44/252 (17%), Positives = 72/252 (28%), Gaps = 75/252 (29%)

Query: 12  HRHQQQDKMIPDKIDYVFKVVVIGDSA---------VGKSQILSRFTK---NEFCFDSKS 59
           H H              + + V+G S          +GKS + +RF +   +EF  D  S
Sbjct: 3   HHHHHSSGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTS 62

Query: 60  TIG-VEFQTRTV--------------TINSKIIKAQIW-------DTAGQERYRAVTSAY 97
            +   +F  R V                +    K  I        D   Q         Y
Sbjct: 63  VLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPY 122

Query: 98  YRGAL-------------------------------------GAVVVYDITK--RQSFDH 118
            + A                                      G ++  D+++   ++FD 
Sbjct: 123 IKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDD 182

Query: 119 VARGVEELRAHADSS-IRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN 177
             + V  L      +   I+++  K D      +           + L   E SA +  N
Sbjct: 183 QLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHT-FALSKKNLQVVETSARSNVN 241

Query: 178 VDTAFFRLLQEI 189
           VD AF  L+Q I
Sbjct: 242 VDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 19/180 (10%)

Query: 29  FKVVVIGDSAVGKSQIL---SRFTKNEFCFDSKS-------TIGVEFQTRTV-TINSKII 77
           FK+V  G    GK+  L             +  S       T+  +F    +  +     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 78  KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD-----HVARGVEELRAHADS 132
           +  ++   GQ  Y A      RG  G V V D    +           R           
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 133 SIRIILIGNKSDLVDMWAVSAEDVVE-FAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
            + I++  NK DL D  A+  E V      +      EA A  G  V      + + + A
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 76.6 bits (188), Expect = 5e-17
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 16/196 (8%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKST 60
             ++ +        ++  + I +    + K VV+GD AVGK+ +L  +T N F  +   T
Sbjct: 128 HVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT 187

Query: 61  IGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA 120
           +  +  +  V ++ K +   +WDTAG E Y  +    Y      ++ + +    SF HV 
Sbjct: 188 V-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR 246

Query: 121 RG-VEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGLF- 166
                E+R H   +  IIL+G K DL D            +  ++    +  A++ G   
Sbjct: 247 AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305

Query: 167 FSEASALNGDNVDTAF 182
           + E SAL    + T F
Sbjct: 306 YLECSALTQRGLKTVF 321

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            ++ ++G   + GK+  ++     +F  D   T+G  F  R +T  +  +  ++WD  GQ
Sbjct: 23  MELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQ 77

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLV 146
            R+R++   Y RG    V + D   ++  +     +  L          +L+ GNK DL 
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137

Query: 147 DMWAVSAEDVVEFAEDQGL-----FFSEASALNGDNVDTAFFRLLQEI 189
              A+  ++++E      +          S    DN+D     L+Q  
Sbjct: 138 G--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 68.4 bits (168), Expect = 9e-15
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +K TIG  F   T++  +  +K  +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
             R     YY      + V D T +      ++ +  +    +     +L+  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+SA +V +        D+      +SA+ G+ +      L+  I
Sbjct: 134 --ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFCFDSKS-TIGVEFQTRTVTINSKIIKAQIWDTAG 86
             V+ +G D++ GK+ I+++   +     +   TIG  F       +S  +   ++D +G
Sbjct: 22  VHVLCLGLDNS-GKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSG 76

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR--IILI-GNKS 143
           Q RYR +   YY+     + V D + R         ++ L  H D   R   IL   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 144 DLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           DL D  AV++  V +        D+      + A+ G+ +      L  +I
Sbjct: 137 DLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 66.4 bits (163), Expect = 3e-14
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +  TIG  F   TVT  +  +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
             R     YY      + V D   R         +  +    +    I+++  NK D+  
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+++ ++          D+     + SA  G  +D A   L++ +
Sbjct: 123 --AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            +V+++G D+A GK+ IL R    +    +  T+G      T+   +  I  ++WD  GQ
Sbjct: 23  IRVLMLGLDNA-GKTSILYRLHLGDV-VTTVPTVG--VNLETLQYKN--ISFEVWDLGGQ 76

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLV 146
              R     Y+      + V D T R         +  L    +    ++LI  NK DL 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136

Query: 147 DMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           D  A S  ++ E        ++     ++S+  GD +      L++ +
Sbjct: 137 D--AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 17/169 (10%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG--VEFQTRTVTINSKIIKAQIWDTAG 86
            +++++G    GK+ IL +F   +       T+G  ++      T+  +  K  IWD  G
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK------TLEHRGFKLNIWDVGG 71

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDL 145
           Q+  R+    Y+    G + V D   RQ      R ++ L      +   +LI  NK DL
Sbjct: 72  QKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

Query: 146 VDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
               A+S   + E  E              SA+ G+++      LL +I
Sbjct: 132 PG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 65.7 bits (161), Expect = 8e-14
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++G    GK+ IL +F+ NE    +  TIG       + IN+   +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
             R+  + YY      +VV D T R+        + ++ AH D     +LI  NK D+ +
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131

Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
              ++  ++ +F +     D         AL G+ +      ++  +
Sbjct: 132 --CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            KV+++G D+A GK+ IL +F+ NE    +  TIG       + IN+   +  +WD  GQ
Sbjct: 22  HKVIIVGLDNA-GKTTILYQFSMNEV-VHTSPTIG--SNVEEIVINN--TRFLMWDIGGQ 75

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLV 146
           E  R+  + YY      +VV D T R+        + ++ AH D     +LI  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135

Query: 147 DMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
           +   ++  ++ +F +     D         AL G+ +      ++  +
Sbjct: 136 E--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 13/167 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    E    +  TIG  F   TV   +  I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
           + R +   Y++   G + V D   R+     A  ++++    +    ++L+  NK D+ +
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 148 MWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
             A+   ++ +         +  +     A  G  +      L  E+
Sbjct: 145 --AMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 64.5 bits (158), Expect = 2e-13
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 29  FKVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
            +++++G D+A GK+ +L +    +       T G  F  ++V       K  +WD  GQ
Sbjct: 17  VRILLLGLDNA-GKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQ 70

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLV 146
            + R    +Y+      + V D   R+ F+   + + EL      S   +LI  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 147 DMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
              A  A ++ E        D+       SAL G+ V      + + +
Sbjct: 131 T--AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 63.4 bits (155), Expect = 4e-13
 Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E    +  TIG  F   TV   +  I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN--ISFTVWDVGGQDK 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVDM 148
            R +   Y++   G + V D   R+  +     +  + A  +    ++L+  NK DL + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN- 115

Query: 149 WAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEI 189
            A++A ++ +         +  +     A +GD +      L  ++
Sbjct: 116 -AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 28/207 (13%), Positives = 70/207 (33%), Gaps = 30/207 (14%)

Query: 1   MNKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS--- 57
           M+              Q            +++++G    GKS I           ++   
Sbjct: 1   MHHHHHHSSGRENLYFQGSKP--------RILLMGLRRSGKSSIQKVVFHKMSPNETLFL 52

Query: 58  KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTS---AYYRGALGAVVVYDITKR- 113
           +ST  +     + +     +  QIWD  GQ  +   T      +RG    + V D     
Sbjct: 53  ESTNKIYKDDISNSSF---VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY 109

Query: 114 -QSFDHVARGVEELRAHADSSIRIILIGNKSDLV----------DMWAVSAEDVVEFAED 162
            ++   +   V +     +  +   +  +K D +          D+   + +D+ +   +
Sbjct: 110 MEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168

Query: 163 QGLFFSEASALNGDNVDTAFFRLLQEI 189
           +       +++   ++  AF +++Q++
Sbjct: 169 KLHLSFYLTSIYDHSIFEAFSKVVQKL 195

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 27/179 (15%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           K+V +G D+A GK+ +L     +        T+     +  +TI    +    +D  G  
Sbjct: 27  KLVFLGLDNA-GKTTLLHMLKDDRL-GQHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI-GNKSDLVD 147
           + R V   Y     G V + D    +        ++ L      +   ILI GNK D  +
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140

Query: 148 MWAVSAEDVVEFAEDQGLFFSEA-----------------SALNGDNVDTAFFRLLQEI 189
             A+S E + E     G    +                  S L        F  + Q I
Sbjct: 141 --AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 30  KVVVIG-DSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           K++ +G D+A GK+ +L     +      + T      +  + I +  IK   +D  G  
Sbjct: 25  KLLFLGLDNA-GKTTLLHMLKNDRL-ATLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH-ADSSIR--IILI-GNKSD 144
           + R +   Y+    G V + D    + FD  AR   EL A    + ++    +I GNK D
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFD-EAR--VELDALFNIAELKDVPFVILGNKID 135

Query: 145 LVDMWAVSAEDVVE------------FAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             +  AVS  ++                  + +     S +  +    AF  L Q I
Sbjct: 136 APN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 30/179 (16%), Positives = 75/179 (41%), Gaps = 21/179 (11%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSK---STIGVEFQTRTVTINSKIIKAQIWDTAG 86
           K++++G S  GKS + S    N   FD++   +TI VE            +   +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR---FLGNMTLNLWDCGG 61

Query: 87  QERYRAVT-----SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS--IRIILI 139
           Q+ +            ++     + V+D+   +    +    + L+     S   +I ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 140 GNKSDLV------DMWAVSAEDVVEFAEDQGLFFSE--ASALNGDNVDTAFFRLLQEIY 190
            +K DLV      +++ +  +++ E + + G        +++  +++  A+ +++  + 
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQE 88
            V+ +G    GK+ +  R    ++  D++++I     +    + N++     + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 89  RYRA-VTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL------RAHADSSIRIILIGN 141
             R  +   +   A   V V D    Q         E L           +S  +++  N
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIACN 123

Query: 142 KSDLVDMWAVSAEDVVE 158
           K D+    A SA+ + +
Sbjct: 124 KQDIAM--AKSAKLIQQ 138

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 39/196 (19%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 2   NKEMSGDGTDHRHQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI 61
            +E S + +  ++    +          +++++G  A GK+ IL +    E    +  TI
Sbjct: 139 GREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTI 197

Query: 62  G--VEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHV 119
           G  VE      T+  K I   +WD  GQ++ R +   Y++   G + V D   R+  +  
Sbjct: 198 GFNVE------TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 251

Query: 120 ARGVEELRAHADSSIRIILI-GNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASAL 173
              +  + A  +    ++L+  NK DL +  A++A ++ +         +  +     A 
Sbjct: 252 REELMRMLAEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCAT 309

Query: 174 NGDNVDTAFFRLLQEI 189
           +GD +      L  ++
Sbjct: 310 SGDGLYEGLDWLSNQL 325

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 21/140 (15%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
            +++ G    GK+ +L+  T +     +  +            +       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 90  YRAVTSAYYRGALGAV--VVYDI---TKRQSFDHVAR------GVEELRAHADSSIRIIL 138
            R   S Y +     V  +++ +      +     A        + E        I I++
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN--GIDILI 161

Query: 139 IGNKSDLVDMWAVSAEDVVE 158
             NKS+L    A     + +
Sbjct: 162 ACNKSELFT--ARPPSKIKD 179

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY 90
           +++ G    GK+ +L+  T +      + T+    Q      +       + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSV----RPTVV--SQEPLSAADYDGSGVTLVDFPGHVKL 68

Query: 91  RAVTSAYYRGALGAV--VVYDI---TKRQSFDHVARGVEEL-------RAHADSSIRIIL 138
           R   S Y +     V  +++ +      +     A   E L        +  ++ I I++
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA---EFLVDILSITESSCENGIDILI 125

Query: 139 IGNKSDLVDMWAVSAEDVVE 158
             NKS+L    A     + +
Sbjct: 126 ACNKSELFT--ARPPSKIKD 143

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 22/198 (11%)

Query: 15  QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-- 72
           ++  K +P     +  VV+ G   VGKS +L   T  +    S       F TR + +  
Sbjct: 154 REVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASY-----PFTTRGINVGQ 208

Query: 73  -NSKIIKAQIWDTAG------QERYRAVTSAYYRGA-LGAVVVY--DITK--RQSFDHVA 120
                 + QI DT G       ER      A      LG +++Y  D ++      +   
Sbjct: 209 FEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQI 268

Query: 121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
              EE+         +++I NK D+ D   +  + + +F +++GL   + SAL G  +D 
Sbjct: 269 HLFEEVHGEFKDLPFLVVI-NKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDL 325

Query: 181 AFFRLLQEIYALSKKELE 198
               +++ +  L++K   
Sbjct: 326 VKEEIIKTLRPLAEKVAR 343

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 48/227 (21%)

Query: 1   MNKEMSGDGTDHRHQQQD---------------KMIPDKIDYVFKVVVIGDSAVGKSQIL 45
           M+ E      +H++Q +D               K + D    +     I D  +     +
Sbjct: 7   MDFETG----EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAV 61

Query: 46  SRFTKNEFCFDSKSTIGVE-FQTRTVTINSKIIKAQIWDTAGQERYRA---VTSAY--YR 99
           S   +  +   SK    V+ F    + IN K + + I     +   R    +T  Y   R
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMYIEQR 116

Query: 100 GALGAVVV----YDITKRQSFDHVARGVEELRAHADSSIRIILIG----NKSDLVDMWAV 151
             L         Y++++ Q +  + + + ELR   +    +++ G     K+ +      
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALD-VC 171

Query: 152 SAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
            +  V    + +  + +    L   N       +LQ++         
Sbjct: 172 LSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWT 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.98
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.92
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.83
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.71
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.67
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.64
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.63
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.61
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.61
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.52
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.51
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.45
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.44
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.44
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.42
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.09
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.96
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.78
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.68
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.49
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.45
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.33
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.29
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.12
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.01
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.92
2xxa_A	433	Signal recognition particle protein; protein trans	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.75
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.73
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.6
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.57
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.55
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.55
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.51
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.49
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.48
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.48
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.48
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.47
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.44
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.44
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.43
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.43
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.41
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.37
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.36
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.36
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.32
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.32
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.32
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.31
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.31
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.31
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.31
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.3
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.3
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.3
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.28
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.28
1g6h_A	257	High-affinity branched-chain amino acid transport	97.28
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.28
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.27
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.27
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.27
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.26
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.26
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.26
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.25
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.25
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.25
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.25
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.24
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.24
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.24
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.24
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.23
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.23
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.22
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.22
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.21
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.2
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.2
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.2
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.2
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.17
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.16
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.15
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.15
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.15
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.15
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.14
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.14
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.13
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.12
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.11
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.11
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.09
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.08
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.08
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.07
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.06
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.04
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.04
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.04
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.03
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.03
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.03
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.02
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.0
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.99
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.99
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.99
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.98
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.98
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.98
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.98
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.97
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.94
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.94
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.94
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.94
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.94
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.94
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.94
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.93
1via_A	175	Shikimate kinase; structural genomics, transferase	96.92
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.92
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.92
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.9
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.9
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.9
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.89
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.89
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.89
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.88
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.88
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.88
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.87
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.86
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.86
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.86
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.86
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.84
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.83
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.83
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.83
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.82
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.82
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.81
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.8
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.8
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.8
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.8
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.77
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.77
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.77
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.77
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.76
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.74
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.73
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.72
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.71
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.7
3co5_A	143	Putative two-component system transcriptional RES	96.69
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.68
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.67
2og2_A	359	Putative signal recognition particle receptor; nuc	96.66
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.63
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.6
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.59
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.59
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.58
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.58
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.58
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.57
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.56
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.55
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.54
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.54
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.52
3uc9_A	233	Increased recombination centers protein 6; rossman	96.52
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.51
3bos_A	242	Putative DNA replication factor; P-loop containing	96.51
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.51
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.5
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.49
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.48
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.46
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.45
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.43
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.39
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.36
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.33
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.33
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.31
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.3
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.3
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.29
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.29
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.29
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.29
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.26
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.25
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.24
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.23
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.22
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.21
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.21
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.19
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.16
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.15
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.13
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.12
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.11
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.11
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.1
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.08
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.07
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.05
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.04
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.04
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.02
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.93
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.93
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.93
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.92
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.92
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.88
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.87
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.86
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.85
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.85
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.83
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.82
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.81
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.76
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.76
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.72
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.69
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.68
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.68
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.66
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.66
2qgz_A	308	Helicase loader, putative primosome component; str	95.65
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.64
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.64
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.63
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.63
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.62
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.61

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.3e-39  Score=239.31  Aligned_cols=166  Identities=36%  Similarity=0.635  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.||||+|++.|..+.+.|+++++++++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il   91 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV   91 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||++++++|+.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++..++++|++|||++|.||+++|+.|+
T Consensus        92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A           92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999999888888999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      +.+...
T Consensus       172 ~~i~~~  177 (216)
T 4dkx_A          172 AALPGM  177 (216)
T ss_dssp             HHC---
T ss_pred             HHHHhh
Confidence            888653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=219.27  Aligned_cols=181  Identities=41%  Similarity=0.654  Sum_probs=148.7

Q ss_pred             ccccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           14 HQQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        14 ~~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      .+......+...+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~   94 (201)
T 2hup_A           15 VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI   94 (201)
T ss_dssp             -----------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH
T ss_pred             ccCCCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence            34444444555677899999999999999999999999887777788888888888888998899999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEec
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASA  172 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa  172 (203)
                      +..+++.+|++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...++ ++++|||
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A           95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999999999999999999999999999998887767899999999999987777888999999999999 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhc
Q 048709          173 LNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       173 ~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      ++|.|++++|++|++.+.+...
T Consensus       175 ~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999987544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-35  Score=216.45  Aligned_cols=171  Identities=39%  Similarity=0.672  Sum_probs=157.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|+
T Consensus        22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (201)
T 2ew1_A           22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA  101 (201)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence            34678999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|++++|+
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999998887767899999999999987777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      ++.+.+.+..+
T Consensus       182 ~l~~~i~~~~~  192 (201)
T 2ew1_A          182 DLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999987544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.7e-35  Score=213.78  Aligned_cols=176  Identities=47%  Similarity=0.736  Sum_probs=155.7

Q ss_pred             cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhh
Q 048709           19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYY   98 (203)
Q Consensus        19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   98 (203)
                      ...+......+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++
T Consensus        12 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   91 (191)
T 2a5j_A           12 SGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY   91 (191)
T ss_dssp             CCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred             cccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHh
Confidence            34445566789999999999999999999999998877778888888888888999999999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      +++|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+
T Consensus        92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  171 (191)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999999999999988877678999999999999877778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 048709          179 DTAFFRLLQEIYALSK  194 (203)
Q Consensus       179 ~~~~~~i~~~~~~~~~  194 (203)
                      +++|++|.+.+.+..+
T Consensus       172 ~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          172 EEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-35  Score=212.69  Aligned_cols=178  Identities=53%  Similarity=0.842  Sum_probs=157.5

Q ss_pred             cccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHh
Q 048709           17 QDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSA   96 (203)
Q Consensus        17 ~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~   96 (203)
                      ...+.....+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..
T Consensus        14 ~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   93 (193)
T 2oil_A           14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSA   93 (193)
T ss_dssp             ------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHH
T ss_pred             cccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHH
Confidence            33444455677899999999999999999999999988888788888888888888999999999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      ++..+|++++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.
T Consensus        94 ~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  173 (193)
T 2oil_A           94 YYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDST  173 (193)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999999998887766789999999999998777788899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhc
Q 048709          177 NVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~~~  194 (203)
                      |++++|++|.+.+.+...
T Consensus       174 gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          174 NVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999877543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=4.3e-36  Score=215.24  Aligned_cols=173  Identities=45%  Similarity=0.745  Sum_probs=128.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            45789999999999999999999998887777777888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988876678999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccc
Q 048709          185 LLQEIYALSKKEL  197 (203)
Q Consensus       185 i~~~~~~~~~~~~  197 (203)
                      |.+.+.....+..
T Consensus       165 l~~~i~~~~~~~~  177 (183)
T 2fu5_C          165 LARDIKAKMDKNW  177 (183)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhccc
Confidence            9999987655443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=4.5e-35  Score=210.33  Aligned_cols=171  Identities=43%  Similarity=0.721  Sum_probs=156.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+..++|+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            44678999999999999999999999999888887888888888888889998999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|+
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999888877667899999999999987677888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      ++.+.+.+...
T Consensus       166 ~l~~~~~~~~~  176 (186)
T 2bme_A          166 QCARKILNKIE  176 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999887543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=8.7e-35  Score=210.49  Aligned_cols=171  Identities=44%  Similarity=0.729  Sum_probs=158.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+..+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            34678999999999999999999999999888888898889998999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999888778899999999999988778888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      +|.+.+.+...
T Consensus       172 ~l~~~i~~~~~  182 (196)
T 3tkl_A          172 TMAAEIKKRMG  182 (196)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhc
Confidence            99999987544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=5.5e-35  Score=208.38  Aligned_cols=168  Identities=49%  Similarity=0.820  Sum_probs=154.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34567899999999999999999999999988777788888888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998888777789999999999998777788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 048709          183 FRLLQEIY  190 (203)
Q Consensus       183 ~~i~~~~~  190 (203)
                      +++.+.+.
T Consensus       170 ~~l~~~i~  177 (179)
T 1z0f_A          170 LEAAKKIY  177 (179)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998774

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=8.8e-35  Score=209.62  Aligned_cols=170  Identities=44%  Similarity=0.684  Sum_probs=155.5

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ...+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   96 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM   96 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence            34567899999999999999999999999988777788888888888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  176 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF  176 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999998888766789999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 048709          183 FRLLQEIYAL  192 (203)
Q Consensus       183 ~~i~~~~~~~  192 (203)
                      ++|.+.+.+.
T Consensus       177 ~~l~~~i~~~  186 (189)
T 2gf9_A          177 ERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=208.22  Aligned_cols=173  Identities=43%  Similarity=0.676  Sum_probs=155.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            34678999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999998887654 5799999999999988777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccc
Q 048709          184 RLLQEIYALSKKEL  197 (203)
Q Consensus       184 ~i~~~~~~~~~~~~  197 (203)
                      +|.+.+....+...
T Consensus       164 ~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          164 CITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999988766543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=9.7e-35  Score=207.65  Aligned_cols=168  Identities=40%  Similarity=0.701  Sum_probs=153.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999998887778888888888888898899999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999988877778999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      |.+.+...
T Consensus       169 l~~~~~~~  176 (181)
T 2efe_B          169 IARRLPRV  176 (181)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHHhc
Confidence            99877543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.3e-34  Score=211.38  Aligned_cols=170  Identities=44%  Similarity=0.729  Sum_probs=156.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45689999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988877678999999999999887778888999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      |.+.+.+...
T Consensus       165 l~~~i~~~~~  174 (206)
T 2bcg_Y          165 MARQIKESMS  174 (206)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHHh
Confidence            9999977543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=211.33  Aligned_cols=177  Identities=39%  Similarity=0.692  Sum_probs=147.9

Q ss_pred             cccccCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh
Q 048709           15 QQQDKMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   94 (203)
                      .......|.+.+..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+
T Consensus        13 ~~~~~~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~   92 (192)
T 2il1_A           13 GLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT   92 (192)
T ss_dssp             ---------CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred             ccCCCCCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHH
Confidence            33445556667789999999999999999999999998887777888888888888899999999999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecC
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASAL  173 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~  173 (203)
                      ..+++.+|++++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..+++.+++... +++++++||+
T Consensus        93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A           93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence            999999999999999999999999999988888777678999999999999877778888899998874 7899999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~  191 (203)
                      +|.|++++|++|.+.+.+
T Consensus       173 ~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.1e-35  Score=207.51  Aligned_cols=167  Identities=36%  Similarity=0.609  Sum_probs=145.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999988877778888888888888888889999999999999999899999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887766678999999999999887778889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 048709          185 LLQEIYA  191 (203)
Q Consensus       185 i~~~~~~  191 (203)
                      |.+.+.+
T Consensus       163 l~~~~~~  169 (170)
T 1z08_A          163 LCKRMIE  169 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=2e-34  Score=209.95  Aligned_cols=170  Identities=41%  Similarity=0.682  Sum_probs=155.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            35679999999999999999999999998877778888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999888776678999999999999887778889999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      |.+.+.+...
T Consensus       165 l~~~i~~~~~  174 (203)
T 1zbd_A          165 LVDVICEKMS  174 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998877543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.1e-35  Score=211.78  Aligned_cols=172  Identities=45%  Similarity=0.720  Sum_probs=146.1

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            33567899999999999999999999999888777788888888888888998899999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++...++++++|||++|.|++++|
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  179 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF  179 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999998887766789999999999998777788889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 048709          183 FRLLQEIYALSK  194 (203)
Q Consensus       183 ~~i~~~~~~~~~  194 (203)
                      ++|++.+.....
T Consensus       180 ~~l~~~i~~~~~  191 (200)
T 2o52_A          180 LKCARTILNKID  191 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999877443

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.6e-34  Score=204.19  Aligned_cols=164  Identities=43%  Similarity=0.690  Sum_probs=151.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            35799999999999999999999999888777788888888888888998999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|++++.+++.+..|+..+.....+++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998888777889999999999998767788889999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          186 LQEI  189 (203)
Q Consensus       186 ~~~~  189 (203)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.3e-34  Score=202.69  Aligned_cols=164  Identities=40%  Similarity=0.654  Sum_probs=151.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||.+.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999988777788888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..++...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999888767889999999999998877788889999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          186 LQEI  189 (203)
Q Consensus       186 ~~~~  189 (203)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.8e-34  Score=205.77  Aligned_cols=169  Identities=32%  Similarity=0.464  Sum_probs=151.0

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      +......+||+|+|.+|+|||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+..+...+++++
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            44456789999999999999999999999888877777776665 66777889999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC-CCCCHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL-NGDNVD  179 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~  179 (203)
                      |++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||+ +|.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            999999999999999999999988876543 789999999999998877899999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++|++|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.7e-34  Score=207.35  Aligned_cols=174  Identities=39%  Similarity=0.621  Sum_probs=153.8

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE-EEEEEECCE---------EEEEEEEeCCCchhhh
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ-TRTVTINSK---------IIKAQIWDTAGQERYR   91 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~   91 (203)
                      ....+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++. ...+.+++.         .+.+.+|||||++.+.
T Consensus         5 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   84 (195)
T 3bc1_A            5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR   84 (195)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred             ccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence            344567899999999999999999999998887777788877776 556666654         7899999999999999


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEE
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                      .....+++.+|++++|+|++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++
T Consensus        85 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (195)
T 3bc1_A           85 SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET  164 (195)
T ss_dssp             HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999999999999999998887765 789999999999998777788899999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709          171 SALNGDNVDTAFFRLLQEIYALSKK  195 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~~~~~~~  195 (203)
                      ||++|.|++++|++|.+.+.+...+
T Consensus       165 Sa~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          165 SAANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998875543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-34  Score=203.54  Aligned_cols=163  Identities=44%  Similarity=0.698  Sum_probs=149.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            35899999999999999999999998887777888888888888889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc---cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM---WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+...   +++..++..+++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999988877778999999999999765   56788889999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          184 RLLQEI  189 (203)
Q Consensus       184 ~i~~~~  189 (203)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=2.7e-34  Score=205.15  Aligned_cols=172  Identities=29%  Similarity=0.449  Sum_probs=151.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      +....++|+|+|.+|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3456799999999999999999999999887777777766655 667788888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      +++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            999999999999999999998885543 4689999999999998877788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 048709          183 FRLLQEIYALSKKE  196 (203)
Q Consensus       183 ~~i~~~~~~~~~~~  196 (203)
                      ++|.+.+.+..+..
T Consensus       164 ~~l~~~~~~~~~~~  177 (181)
T 2fn4_A          164 EQLVRAVRKYQEQE  177 (181)
T ss_dssp             HHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhhccC
Confidence            99999998765543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.4e-34  Score=203.65  Aligned_cols=167  Identities=27%  Similarity=0.339  Sum_probs=137.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh--hhhhhHhhhcCCcEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--YRAVTSAYYRGALGA  104 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~  104 (203)
                      ..++|+|+|.+|+|||||+++|.+..+...+ ++.+.++....+.+++..+.+.+|||||.+.  +..+...+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            5699999999999999999999998876555 4566777777888899999999999999887  566778889999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            999999999999999999888876533 6799999999999987777888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      +|.+.+...++
T Consensus       162 ~l~~~~~~~~~  172 (175)
T 2nzj_A          162 GVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhc
Confidence            99999876544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.3e-34  Score=204.77  Aligned_cols=165  Identities=44%  Similarity=0.747  Sum_probs=144.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46999999999999999999999998887777888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+. .+....+++.+++...+++++++||++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998888777789999999999994 346778889999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-34  Score=204.31  Aligned_cols=168  Identities=39%  Similarity=0.645  Sum_probs=144.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .+..++|+|+|.+|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            356799999999999999999999998875 3556788888877777889999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++..+++...+++++++||++|.|++++|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999988887767899999999999988777888899999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 048709          184 RLLQEIYAL  192 (203)
Q Consensus       184 ~i~~~~~~~  192 (203)
                      ++.+.+.+.
T Consensus       167 ~l~~~~~~~  175 (180)
T 2g6b_A          167 AIAKELKRR  175 (180)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999988654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-34  Score=209.33  Aligned_cols=168  Identities=40%  Similarity=0.637  Sum_probs=152.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ..+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            34678999999999999999999999998877777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++++
T Consensus        99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999998887767899999999999987667888999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 048709          184 RLLQEIYA  191 (203)
Q Consensus       184 ~i~~~~~~  191 (203)
                      +|.+.+.+
T Consensus       179 ~l~~~i~~  186 (192)
T 2fg5_A          179 GISRQIPP  186 (192)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99886643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=209.30  Aligned_cols=173  Identities=24%  Similarity=0.289  Sum_probs=145.8

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhc
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-VTSAYYR   99 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~   99 (203)
                      .+......+||+|+|.+|||||||+++|.+........++.+.++....+.+++..+.+.+|||+|++.+.. +...+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            344456789999999999999999999986554434445666677777788899999999999999987764 7788899


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      .+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|+
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            99999999999999999999999988877654 58999999999999877778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 048709          179 DTAFFRLLQEIYALS  193 (203)
Q Consensus       179 ~~~~~~i~~~~~~~~  193 (203)
                      +++|+++++.+....
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999886543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2e-35  Score=213.41  Aligned_cols=171  Identities=41%  Similarity=0.666  Sum_probs=156.8

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ...+..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence            34567899999999999999999999998887777788888888888888888889999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  177 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF  177 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999988777889999999999998877888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 048709          183 FRLLQEIYALS  193 (203)
Q Consensus       183 ~~i~~~~~~~~  193 (203)
                      ++|++.+.+..
T Consensus       178 ~~l~~~i~~~~  188 (191)
T 3dz8_A          178 ERLVDAICDKM  188 (191)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.2e-34  Score=203.26  Aligned_cols=165  Identities=36%  Similarity=0.573  Sum_probs=150.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999888887888888888888888998999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999988887665 678999999999998776788899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          186 LQEIYA  191 (203)
Q Consensus       186 ~~~~~~  191 (203)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.8e-34  Score=205.40  Aligned_cols=168  Identities=29%  Similarity=0.381  Sum_probs=149.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3579999999999999999999998888777777777666 667778999999999999999999989999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|+|++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999988876654 68999999999999887788999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      +++.+.....
T Consensus       163 l~~~~~~~~~  172 (181)
T 3t5g_A          163 IILEAEKMDG  172 (181)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHhcC
Confidence            9999877543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2.9e-34  Score=204.65  Aligned_cols=164  Identities=37%  Similarity=0.639  Sum_probs=151.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999998888888888888888888899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|+++++++|.
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999988877667899999999999987777888899999999999999999999999999999998


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            8654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=212.53  Aligned_cols=169  Identities=60%  Similarity=0.920  Sum_probs=147.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            35779999999999999999999999998888878888888888888999889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|||++++.+++.+..|+..+......++|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  169 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE  169 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778888999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      |.+.+.+..
T Consensus       170 l~~~i~~~~  178 (223)
T 3cpj_B          170 LINTIYQKV  178 (223)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHHHh
Confidence            999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=4.4e-34  Score=202.07  Aligned_cols=165  Identities=25%  Similarity=0.307  Sum_probs=135.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-VTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~  106 (203)
                      .+||+++|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+|||||++.+.. +...+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777666666777778888888999999999999999988876 67778899999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998887665 589999999999998777899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 048709          186 LQEIYAL  192 (203)
Q Consensus       186 ~~~~~~~  192 (203)
                      ++.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=211.30  Aligned_cols=169  Identities=28%  Similarity=0.435  Sum_probs=144.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..++..+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34679999999999999999999999998877777776555 55556677778999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|||++++.+++.+..|+..+..... .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877644 6789999999999988778899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      +|.+.+.....
T Consensus       180 ~l~~~i~~~~~  190 (201)
T 3oes_A          180 KVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHhhhh
Confidence            99999877544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=6.8e-34  Score=204.97  Aligned_cols=166  Identities=39%  Similarity=0.636  Sum_probs=148.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-AVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~  103 (203)
                      ....+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3457999999999999999999999999888787888888888888899999999999999999988 888999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC---CCHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG---DNVD  179 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~  179 (203)
                      +++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+++.+++...+++++++||++|   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999887775 478999999999999877778889999999999999999999999   9999


Q ss_pred             HHHHHHHHHHH
Q 048709          180 TAFFRLLQEIY  190 (203)
Q Consensus       180 ~~~~~i~~~~~  190 (203)
                      ++|++|.+.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=208.95  Aligned_cols=167  Identities=36%  Similarity=0.602  Sum_probs=138.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34567999999999999999999999998877777888888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC------cccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV------DMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..++..+++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999988887766789999999999996      3456778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIY  190 (203)
Q Consensus       178 i~~~~~~i~~~~~  190 (203)
                      ++++|++|++.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.7e-33  Score=200.44  Aligned_cols=166  Identities=33%  Similarity=0.587  Sum_probs=146.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999988877778888888888888999989999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~  179 (203)
                      ++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999888876554    678999999999997 44678888999988 667899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++|+++++.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (177)
T 1wms_A          163 AAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=2.3e-34  Score=211.71  Aligned_cols=176  Identities=38%  Similarity=0.620  Sum_probs=151.0

Q ss_pred             cCCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE----------EEEEEEEeCCCch
Q 048709           19 KMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK----------IIKAQIWDTAGQE   88 (203)
Q Consensus        19 ~~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~   88 (203)
                      ++.....++.+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.||||||++
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~   95 (217)
T 2f7s_A           16 PRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE   95 (217)
T ss_dssp             -----CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH
T ss_pred             cCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH
Confidence            334444577899999999999999999999998887666677777777777777665          7889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeE
Q 048709           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFF  167 (203)
Q Consensus        89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  167 (203)
                      .+...+..+++.+|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...++++
T Consensus        96 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~  175 (217)
T 2f7s_A           96 RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY  175 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred             hHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence            9999999999999999999999999999999989887766554 689999999999998877788899999999999999


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          168 SEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       168 ~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      +++||++|.|++++|++|.+.+.+...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999877433

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.9e-34  Score=205.64  Aligned_cols=168  Identities=32%  Similarity=0.498  Sum_probs=147.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-EEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-KIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            3569999999999999999999999888766667877788888888876 678999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD--SSIR-IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ++|+|++++.+++.+..|+..+.....  ...| +++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999889888766432  2444 8999999999877778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048709          182 FFRLLQEIYALS  193 (203)
Q Consensus       182 ~~~i~~~~~~~~  193 (203)
                      |++|.+.+.+..
T Consensus       164 ~~~l~~~~~~~~  175 (178)
T 2hxs_A          164 FQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhh
Confidence            999999886643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=205.09  Aligned_cols=166  Identities=34%  Similarity=0.512  Sum_probs=148.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4579999999999999999999999888777766665544 456677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887664 68999999999999887778889999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      |++.+...
T Consensus       171 l~~~i~~~  178 (206)
T 2bov_A          171 LMREIRAR  178 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.4e-33  Score=202.67  Aligned_cols=168  Identities=39%  Similarity=0.668  Sum_probs=152.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34579999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|+|++++.++..+..|+..+..... .++|+++|+||+|+.. +.+..+++.+++...+++++++||++|.|++++|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  170 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999988877654 6799999999999954 46778889999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 048709          184 RLLQEIYALS  193 (203)
Q Consensus       184 ~i~~~~~~~~  193 (203)
                      +|.+.+....
T Consensus       171 ~l~~~~~~~~  180 (195)
T 1x3s_A          171 ELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHTSG
T ss_pred             HHHHHHHhhh
Confidence            9999987643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=204.62  Aligned_cols=164  Identities=27%  Similarity=0.399  Sum_probs=141.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            45679999999999999999999999988777777776555 455677889999999999999988775 6789999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec-CCCCCHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA-LNGDNVDT  180 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~  180 (203)
                      ++|||++++++++.+..|+..+.....   .++|+++|+||+|+.+.+.+..+++.+++...++++++||| ++|.|+++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            999999999999999999988876542   58999999999999877788899999999999999999999 89999999


Q ss_pred             HHHHHHHHHH
Q 048709          181 AFFRLLQEIY  190 (203)
Q Consensus       181 ~~~~i~~~~~  190 (203)
                      +|++|++.+.
T Consensus       176 lf~~l~~~i~  185 (187)
T 3c5c_A          176 VFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.3e-33  Score=199.05  Aligned_cols=163  Identities=27%  Similarity=0.341  Sum_probs=123.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|+|||||+++|.+....... ++.+..+ ...+.+++..+.+.+||+||++.+..+...++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999987665433 4444443 45667889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            999999999999999988877543 7899999999999988778899999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 048709          187 QEIYAL  192 (203)
Q Consensus       187 ~~~~~~  192 (203)
                      +.+...
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3e-33  Score=200.96  Aligned_cols=164  Identities=19%  Similarity=0.303  Sum_probs=142.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....+||+|+|.+|||||||+++|+++.+...+.++ . ......+.+++..+.+.+|||+|++.+.     +++++|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-G-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-C-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-c-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            3456799999999999999999999999887776665 3 3344777889999999999999988776     7888999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVD  179 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~  179 (203)
                      +++|||++++.+++.+..|+..+..... .++|+++|+||+|+.  ..+.+..+++.+++...+ +++++|||++|.|++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999887654 679999999999994  456788899999999987 899999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 048709          180 TAFFRLLQEIYALSK  194 (203)
Q Consensus       180 ~~~~~i~~~~~~~~~  194 (203)
                      ++|+++++.+...++
T Consensus       169 ~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          169 RVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=205.58  Aligned_cols=168  Identities=42%  Similarity=0.734  Sum_probs=151.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34579999999999999999999999988878878888888888888999889999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+. .+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999998888776789999999999994 4467788889999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      |.+.+.+..
T Consensus       176 l~~~~~~~~  184 (213)
T 3cph_A          176 LAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2.6e-33  Score=197.47  Aligned_cols=164  Identities=34%  Similarity=0.529  Sum_probs=143.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999888776666665444 3456778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+++..+++.+++...+++++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999988887765 589999999999998777788899999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          186 LQEIYA  191 (203)
Q Consensus       186 ~~~~~~  191 (203)
                      .+.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=1.2e-33  Score=199.33  Aligned_cols=162  Identities=30%  Similarity=0.478  Sum_probs=143.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .++|+++|.+|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999888777767766544 35566777888999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++... +++++++||++|.|+++++++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            999999999999999888877543 68999999999999887778889999999887 7999999999999999999999


Q ss_pred             HHHHH
Q 048709          186 LQEIY  190 (203)
Q Consensus       186 ~~~~~  190 (203)
                      .+.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98763

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1e-33  Score=202.23  Aligned_cols=170  Identities=35%  Similarity=0.591  Sum_probs=136.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ....++|+|+|.+|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3467999999999999999999999998887777888888888887776 566789999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-HcCCeEEEEecCCCCC
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVD-MWAVSAEDVVEFAE-DQGLFFSEASALNGDN  177 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~  177 (203)
                      +++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..+++.+++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999888876653    6789999999999954 34567888888887 5678999999999999


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 048709          178 VDTAFFRLLQEIYALSK  194 (203)
Q Consensus       178 i~~~~~~i~~~~~~~~~  194 (203)
                      ++++|++|.+.+.+.++
T Consensus       165 i~~l~~~l~~~~~~~~~  181 (182)
T 1ky3_A          165 VDTAFEEIARSALQQNQ  181 (182)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=2.3e-33  Score=197.58  Aligned_cols=163  Identities=29%  Similarity=0.453  Sum_probs=145.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .++|+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+|||||++.+..+...++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            589999999999999999999998887766666553 3456677888889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +|++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++..+++...+++++++||++|.|+++++++|.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            999999999999999888877654 6899999999999987777888899999999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          187 QEIYA  191 (203)
Q Consensus       187 ~~~~~  191 (203)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=4.8e-33  Score=199.59  Aligned_cols=167  Identities=34%  Similarity=0.509  Sum_probs=148.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            3569999999999999999999999888777666665444 455677888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999988877765 58999999999999877778889999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      |.+.+...+
T Consensus       175 l~~~i~~~~  183 (187)
T 2a9k_A          175 LMREIRARK  183 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987644

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=8.8e-33  Score=200.92  Aligned_cols=164  Identities=40%  Similarity=0.672  Sum_probs=145.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEE-----------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKI-----------------------------   76 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   76 (203)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            356999999999999999999999999887787888888888877777655                             


Q ss_pred             --------EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           77 --------IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        77 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                              +.+.+|||||++.+......+++.+|++++|+|++++.++..+..|+..+....  +.|+++|+||+| ...
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~  161 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK  161 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence                    889999999999999999999999999999999999999999999998887765  389999999999 555


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +.+..+++.+++...+++++++||++|.|++++|++|.+.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            57888999999999999999999999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-33  Score=202.68  Aligned_cols=166  Identities=31%  Similarity=0.478  Sum_probs=146.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4579999999999999999999999988777777766544 45567788899999999999887 677888999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFF  183 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~  183 (203)
                      +|||++++++++.+..|+..+..... .++|+++|+||+|+...+.+..+++.+++...+++++++||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            99999999999999999888877654 689999999999998777788899999999999999999999999 9999999


Q ss_pred             HHHHHHHHhh
Q 048709          184 RLLQEIYALS  193 (203)
Q Consensus       184 ~i~~~~~~~~  193 (203)
                      +|++.+.+..
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=9.8e-33  Score=198.42  Aligned_cols=167  Identities=31%  Similarity=0.507  Sum_probs=144.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++. .+.....+.+++..+.+.+|||||++.+..++..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            357999999999999999999999988877765665 4445566778899999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. .....+++..++...+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988877554 6899999999999974 467788899999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      |.+.+.....
T Consensus       160 l~~~~~~~~~  169 (189)
T 4dsu_A          160 LVREIRKHKE  169 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999877543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.8e-34  Score=209.54  Aligned_cols=171  Identities=30%  Similarity=0.465  Sum_probs=115.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEECCE--EEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTINSK--IIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      ...++|+|+|.+|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  666666677777777778888876  78999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHHHcCCeEEEEecCC-CC
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVD-MWAVSAEDVVEFAEDQGLFFSEASALN-GD  176 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~~  176 (203)
                      |++++|+|++++.+++.+..|+..+.....   .++|+++|+||+|+.+ .+.+..+++.+++...+++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999888766   6899999999999987 677888999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHhhccc
Q 048709          177 NVDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~~~~~  196 (203)
                      |++++|++|.+.+.+...+.
T Consensus       178 gi~~l~~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDK  197 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhh
Confidence            99999999999887755443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.3e-33  Score=207.48  Aligned_cols=169  Identities=22%  Similarity=0.353  Sum_probs=144.7

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....+||+|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345679999999999999999999999998888778877665 4556677788899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEE
Q 048709          104 AVVVYDITKRQSFDH-VARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSE  169 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  169 (203)
                      +++|||++++++++. +..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...++ ++++
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  180 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE  180 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence            999999999999999 688988887765 68999999999999763            56889999999999999 9999


Q ss_pred             EecCCCCC-HHHHHHHHHHHHHHhhc
Q 048709          170 ASALNGDN-VDTAFFRLLQEIYALSK  194 (203)
Q Consensus       170 ~sa~~~~~-i~~~~~~i~~~~~~~~~  194 (203)
                      |||++|.| ++++|+++++.+.....
T Consensus       181 ~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          181 GSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             eccCCCcccHHHHHHHHHHHHhccCc
Confidence            99999998 99999999998876544

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.3e-33  Score=203.28  Aligned_cols=168  Identities=30%  Similarity=0.563  Sum_probs=148.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            34679999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-HcCCeEEEEecCCCCCHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~  179 (203)
                      ++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999888776543    478999999999997 34677788888887 678899999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048709          180 TAFFRLLQEIYALS  193 (203)
Q Consensus       180 ~~~~~i~~~~~~~~  193 (203)
                      ++|++|.+.+.+..
T Consensus       164 ~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          164 QAFQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=9.9e-33  Score=199.65  Aligned_cols=167  Identities=25%  Similarity=0.392  Sum_probs=146.4

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            456799999999999999999999999987777777766554 4567888999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHHcCCe-EEEEecCCCCCHHH
Q 048709          105 VVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM--WAVSAEDVVEFAEDQGLF-FSEASALNGDNVDT  180 (203)
Q Consensus       105 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~  180 (203)
                      ++|+|++++.+++.+ ..|+..+... ..+.|+++|+||+|+.+.  +.+..+++.+++...+++ ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 6677776654 367999999999999753  568889999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048709          181 AFFRLLQEIYALS  193 (203)
Q Consensus       181 ~~~~i~~~~~~~~  193 (203)
                      +|+++++.+....
T Consensus       178 l~~~l~~~i~~~~  190 (194)
T 3reg_A          178 VFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=8.4e-33  Score=201.01  Aligned_cols=170  Identities=26%  Similarity=0.386  Sum_probs=138.6

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            345679999999999999999999999887766666665443 4566778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcCC-eEEE
Q 048709          104 AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQGL-FFSE  169 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  169 (203)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+..            .+.+..+++..++...+. ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 7888777654 4899999999999975            246778889999998887 9999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709          170 ASALNGDNVDTAFFRLLQEIYALSKK  195 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~~~~~~~~  195 (203)
                      |||++|.|++++|+++++.+.....+
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.7e-33  Score=199.63  Aligned_cols=166  Identities=28%  Similarity=0.400  Sum_probs=144.4

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            345679999999999999999999999888777767765554 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEE
Q 048709          104 AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSE  169 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  169 (203)
                      +++|||++++.++..+. .|+..+.... .++|+++|+||+|+.+.            +.+..+++.+++...++ ++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  171 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE  171 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence            99999999999999987 7888877654 48899999999999753            35778899999999887 8999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 048709          170 ASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      |||++|.|++++|++|.+.+..
T Consensus       172 ~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          172 CSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=201.25  Aligned_cols=168  Identities=26%  Similarity=0.299  Sum_probs=140.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC--ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF--CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGA  101 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~  101 (203)
                      ....+||+|+|.+|+|||||+++|++...  ...+ ++.+.++....+.+++..+.+.+|||+|... +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            34579999999999999999999997543  2333 4566677777788899999999999999876 556677788999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...++++++|||++|.||++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988776543 25799999999999987677888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048709          181 AFFRLLQEIYALS  193 (203)
Q Consensus       181 ~~~~i~~~~~~~~  193 (203)
                      +|+++++.+....
T Consensus       193 lf~~l~~~i~~~~  205 (211)
T 2g3y_A          193 LFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999886543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.1e-32  Score=196.60  Aligned_cols=163  Identities=20%  Similarity=0.310  Sum_probs=137.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|||||||+++|.+..+.. +.++.+. .....+.+++..+.+.+|||||++.     ..+++++|++++
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            56999999999999999999999988876 5566654 3456677889999999999999876     457888999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCC--cccCCCHHHHHHHHHHc-CCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLV--DMWAVSAEDVVEFAEDQ-GLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~  180 (203)
                      |||++++++++.+..|+..+....   ..++|+++|+||+|+.  ..+.+..+++.+++... +++++++||++|.|+++
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  158 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR  158 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence            999999999999998766554443   3689999999999994  44568888999998876 68999999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 048709          181 AFFRLLQEIYALSKKE  196 (203)
Q Consensus       181 ~~~~i~~~~~~~~~~~  196 (203)
                      +|+++.+.+....+..
T Consensus       159 lf~~l~~~~~~~~~~~  174 (178)
T 2iwr_A          159 VFQEVAQKVVTLRKQQ  174 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998765543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=2.6e-32  Score=196.73  Aligned_cols=169  Identities=32%  Similarity=0.499  Sum_probs=135.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            56999999999999999999999988776665655443 34566778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|+++++++|
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888877654 5799999999999976 4677889999999999999999999999999999999


Q ss_pred             HHHHHHhhcccc
Q 048709          186 LQEIYALSKKEL  197 (203)
Q Consensus       186 ~~~~~~~~~~~~  197 (203)
                      .+.+...+.+++
T Consensus       178 ~~~~~~~~~~~l  189 (190)
T 3con_A          178 VREIRQYRMKKL  189 (190)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHhhc
Confidence            999987666543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=6.6e-32  Score=196.49  Aligned_cols=164  Identities=25%  Similarity=0.371  Sum_probs=143.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            46799999999999999999999999887777777766654 34677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+...            +.+..++..+++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 57777766644 57899999999999764            45778889999999888 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~  191 (203)
                      |++|.|++++|++|.+.+.+
T Consensus       181 A~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=2.5e-32  Score=195.78  Aligned_cols=164  Identities=29%  Similarity=0.449  Sum_probs=142.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            569999999999999999999999888777666665443 4556778899999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEec
Q 048709          107 VYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEASA  172 (203)
Q Consensus       107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa  172 (203)
                      |+|++++.++..+. .|+..+.... .+.|+++|+||+|+...            +.+..++..+++...+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 6877777654 48899999999998653            45778888899999987 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHh
Q 048709          173 LNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       173 ~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++|.|++++|+++.+.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCccCHHHHHHHHHHHHhcc
Confidence            99999999999999988653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=201.43  Aligned_cols=167  Identities=28%  Similarity=0.389  Sum_probs=124.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            457999999999999999999999988876666665443 3455678888999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+...            +.+..+++.+++...++ ++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 6887776654 67899999999999764            25777888999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhhc
Q 048709          172 ALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      |++|.|++++|++|++.+.+...
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999886544

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=200.71  Aligned_cols=166  Identities=27%  Similarity=0.424  Sum_probs=142.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .....+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.|..+...+++++|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            345679999999999999999999999988777777776554 4456677888899999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEE
Q 048709          104 AVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSE  169 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~  169 (203)
                      +++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++.+++...+ +++++
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  181 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE  181 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999998 68888776654 57999999999999742            4578888999998887 69999


Q ss_pred             EecC-CCCCHHHHHHHHHHHHHH
Q 048709          170 ASAL-NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       170 ~sa~-~~~~i~~~~~~i~~~~~~  191 (203)
                      |||+ +|.|++++|+.+++.+..
T Consensus       182 ~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          182 CSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHHHHhh
Confidence            9999 689999999999988764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-32  Score=193.56  Aligned_cols=163  Identities=28%  Similarity=0.362  Sum_probs=141.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||.+.+......++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887766666665443 3445678888899999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|++++.+++.+..|+..+.....  .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999998888887776543  57899999999999877778888889999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          185 LLQEIY  190 (203)
Q Consensus       185 i~~~~~  190 (203)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987553

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.6e-32  Score=196.97  Aligned_cols=164  Identities=27%  Similarity=0.431  Sum_probs=141.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..+...+++.+|+++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            4579999999999999999999999988777767776554 345667888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEe
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  171 (203)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++.+++...+ +++++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            99999999999998 67887776654 57999999999999742            4678888999998887 7999999


Q ss_pred             cC-CCCCHHHHHHHHHHHHHH
Q 048709          172 AL-NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       172 a~-~~~~i~~~~~~i~~~~~~  191 (203)
                      |+ ++.|++++|+.+++.+..
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            99 689999999999988763

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.1e-31  Score=188.62  Aligned_cols=161  Identities=32%  Similarity=0.531  Sum_probs=141.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||.+.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            4899999999999999999999988776665665433 345667788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....+++.+++...+++++++||++|.|+++++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888877654 5799999999999976 46778889999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T 2ce2_X          161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=8e-33  Score=202.79  Aligned_cols=169  Identities=30%  Similarity=0.485  Sum_probs=142.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3569999999999999999999999888777767766544 455667888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccC--------CCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709          106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWA--------VSAEDVVEFAEDQGL-FFSEASALNG  175 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~sa~~~  175 (203)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+.+.+.        +..+++.+++...+. +++++||++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            999999999999986 7888877654 4899999999999876432        367888899998886 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhccc
Q 048709          176 DNVDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~~~~~  196 (203)
                      .|++++|+++++.+....++.
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999998765443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=8e-33  Score=203.60  Aligned_cols=170  Identities=28%  Similarity=0.457  Sum_probs=146.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ....+||+|+|.+|||||||+++|++..+...+.++.+........... +..+.+.+|||||++.+......++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            3467999999999999999999999988876666777776666665543 444789999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  167 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL  167 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999999999888777899999999999988767888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      +|.+.+.....
T Consensus       168 ~l~~~~~~~~~  178 (218)
T 4djt_A          168 HLARIFTGRPD  178 (218)
T ss_dssp             HHHHHHHCCTT
T ss_pred             HHHHHHhcccc
Confidence            99999877544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.2e-35  Score=213.05  Aligned_cols=169  Identities=45%  Similarity=0.746  Sum_probs=142.8

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      ...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34467899999999999999999999998887777778888888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ++++|+|++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887776789999999999998776777778888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 048709          183 FRLLQEIYA  191 (203)
Q Consensus       183 ~~i~~~~~~  191 (203)
                      ++|.+.+.+
T Consensus       188 ~~l~~~l~~  196 (199)
T 3l0i_B          188 MTMAAEIKK  196 (199)
T ss_dssp             HHHTTTTTT
T ss_pred             HHHHHHHHH
Confidence            999876643

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-31  Score=195.13  Aligned_cols=165  Identities=25%  Similarity=0.355  Sum_probs=137.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......++.++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            35789999999999999999999999887777666665544 34677888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+...            +.+..++..+++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67777766643 57899999999999764            35778888899988887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 048709          172 ALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |++|.|++++|++|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.2e-32  Score=195.28  Aligned_cols=165  Identities=25%  Similarity=0.337  Sum_probs=142.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            3569999999999999999999999888766666665443 345567888899999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999998888877766543  4789999999999975 46778888999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 048709          184 RLLQEIYAL  192 (203)
Q Consensus       184 ~i~~~~~~~  192 (203)
                      +|++.+...
T Consensus       164 ~l~~~~~~~  172 (199)
T 2gf0_A          164 ELLTLETRR  172 (199)
T ss_dssp             HHHHHCSSS
T ss_pred             HHHHHHhhh
Confidence            999877554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.4e-32  Score=198.86  Aligned_cols=168  Identities=22%  Similarity=0.242  Sum_probs=136.9

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC----------CCCCcceeeEEEEE-EECCEEEEEEEEeCCCchhhhh
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD----------SKSTIGVEFQTRTV-TINSKIIKAQIWDTAGQERYRA   92 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~~   92 (203)
                      .....+||+|+|.+|||||||++.+.+......          ..++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            345789999999999999999987766443221          12333333333333 4567788999999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCC------CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-
Q 048709           93 VTSAYYRGALGAVVVYDIT------KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-  165 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  165 (203)
                      .+..+++++|++++|||++      +.+++..+..|+..+. ....++|+++|+||+|+.+  .+..+++.+++...++ 
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~  166 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF  166 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence            9999999999999999999      5677777878877762 3337899999999999977  5788999999999999 


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHhhc
Q 048709          166 FFSEASALNGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      +++++||++|.|++++|++|.+.+.+..+
T Consensus       167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          167 PVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=3e-31  Score=191.82  Aligned_cols=167  Identities=26%  Similarity=0.316  Sum_probs=137.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC--CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-hhhhhHhhhcCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNE--FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-YRAVTSAYYRGAL  102 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d  102 (203)
                      ...+||+++|.+|+|||||+++|++..  +...+ ++.+.++....+.+++..+.+.+|||+|... +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            346999999999999999999999643  23333 4456677777788899999999999999776 4556778889999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ++++|||++++++|+.+..|+..+..... .++|+++|+||+|+...+.+..++...++...++++++|||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            99999999999999999999887776533 67999999999999876678888888888888999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 048709          182 FFRLLQEIYALS  193 (203)
Q Consensus       182 ~~~i~~~~~~~~  193 (203)
                      |+++++.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=5.2e-32  Score=197.52  Aligned_cols=162  Identities=28%  Similarity=0.432  Sum_probs=137.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+++|.+|+|||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+......+++++|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777666654 444556677888889999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+....            .+..++...++...++ +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999996 7877777665 689999999999987642            2778888899999886 599999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~  189 (203)
                      |++|.|++++|+++++.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.3e-32  Score=202.90  Aligned_cols=170  Identities=29%  Similarity=0.478  Sum_probs=148.5

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCC
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGA  101 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~  101 (203)
                      .......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+..++..+++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34455679999999999999999999777766666668888888888888899999999999999999999999999999


Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      |++++|||++++.++..+..|+..+.... .++|+++|+||+|+.+.. . ..+...++...++++++|||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS-S-CGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc-c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999888765 578999999999997643 2 23666788888999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 048709          182 FFRLLQEIYALSK  194 (203)
Q Consensus       182 ~~~i~~~~~~~~~  194 (203)
                      |++|.+.+.....
T Consensus       166 ~~~l~~~l~~~~~  178 (221)
T 3gj0_A          166 FLWLARKLIGDPN  178 (221)
T ss_dssp             HHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhCcc
Confidence            9999999877543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.3e-30  Score=189.31  Aligned_cols=168  Identities=60%  Similarity=0.958  Sum_probs=149.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999888777788888888888889999999999999999999888889999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|+++..+++.+..|+..+......+.|+++++||+|+.+.+.+..+++..++...++.++++||+++.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988888887766555678999999999998766778888999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048709          186 LQEIYALS  193 (203)
Q Consensus       186 ~~~~~~~~  193 (203)
                      .+.+....
T Consensus       163 ~~~~~~~~  170 (199)
T 2f9l_A          163 LTEIYRIV  170 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.4e-32  Score=196.59  Aligned_cols=162  Identities=30%  Similarity=0.470  Sum_probs=125.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4699999999999999999999998877666666554332 233456667888999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcccC----------CCHHHHHHHHHHcCC-eEEEEecCC
Q 048709          107 VYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMWA----------VSAEDVVEFAEDQGL-FFSEASALN  174 (203)
Q Consensus       107 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~  174 (203)
                      |+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.          +..+++.+++...+. ++++|||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            99999999999987 6888777654 4899999999999866433          477888899998886 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEIY  190 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~  190 (203)
                      |.|++++|+++.+.+.
T Consensus       165 ~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.98  E-value=5.9e-31  Score=190.73  Aligned_cols=168  Identities=20%  Similarity=0.316  Sum_probs=130.3

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG  100 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  100 (203)
                      +.+.....+|+|+|.+|||||||+++|++..+.. .+.++.+..  ...+..  ..+.+.+|||||++.+..++..++++
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK--GRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe--CCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            3445678999999999999999999999999877 666776633  333333  34678999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCcccCCCHHHHHHHH------HHcCCe
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHAD--------SSIRIILIGNKSDLVDMWAVSAEDVVEFA------EDQGLF  166 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~  166 (203)
                      +|++|+|+|+++++++..+..|+..+.....        .++|+++|+||+|+...  ...+++.+..      ...+++
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHHHTHHHHHTTSCEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHHhcchhhccCCeeE
Confidence            9999999999999999999888888765422        37899999999999774  2333333222      346788


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHhhcc
Q 048709          167 FSEASALNGDNVDTAFFRLLQEIYALSKK  195 (203)
Q Consensus       167 ~~~~sa~~~~~i~~~~~~i~~~~~~~~~~  195 (203)
                      +++|||++|.|++++|++|.+.+....++
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999998876543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.98  E-value=7.2e-31  Score=189.23  Aligned_cols=162  Identities=24%  Similarity=0.390  Sum_probs=131.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCC-CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNE-FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      ....++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.+|||||++.+...+..++.++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4457999999999999999999999887 4444545544  4555555654  678999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCC
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHAD---SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNG  175 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~  175 (203)
                      +++|+|++++.++..+..|+..+.....   .+.|+++|+||+|+.+  ....+++.+++.     ..++++++|||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999889888776543   5799999999999976  456677776663     23578999999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q 048709          176 DNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~  192 (203)
                      .|++++|++|.+.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             BTHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.9e-30  Score=185.31  Aligned_cols=159  Identities=24%  Similarity=0.428  Sum_probs=130.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|.+|||||||+++|++.. ...+.++.+  .....+.+++  ..+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            457999999999999999999999888 555556655  3444555554  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            99999999999999888888766533 68999999999999763  34555544432     345689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++++++.+.+.+
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=1e-29  Score=183.57  Aligned_cols=165  Identities=61%  Similarity=0.967  Sum_probs=149.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+......++..++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            45679999999999999999999999988888888998888888899999999999999999998888888899999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|+.+..+++.+..|+..+......+.|+++++||+|+.+.+....+++.+++...++.++++|++++.+++++|+.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~  185 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT  185 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999988888887776655567899999999999876677888899999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          185 LLQEI  189 (203)
Q Consensus       185 i~~~~  189 (203)
                      +.+.+
T Consensus       186 l~~~i  190 (191)
T 1oix_A          186 ILTEI  190 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=4.7e-31  Score=188.86  Aligned_cols=162  Identities=23%  Similarity=0.421  Sum_probs=126.7

Q ss_pred             CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR   99 (203)
Q Consensus        20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   99 (203)
                      ..+......++|+|+|.+|+|||||+++|++..+ ..+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++
T Consensus        13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~   87 (181)
T 2h17_A           13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYT   87 (181)
T ss_dssp             --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGT
T ss_pred             CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhc
Confidence            3344455679999999999999999999999887 33445555433  4455555  67899999999999999999999


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecC
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASAL  173 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~  173 (203)
                      ++|++++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+...     ..+++++++||+
T Consensus        88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  165 (181)
T 2h17_A           88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCAL  165 (181)
T ss_dssp             TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCC
Confidence            9999999999999999999988888876643 36899999999999976  345556655442     235689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQE  188 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~  188 (203)
                      +|.|++++|++|.+.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999998764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=7.4e-31  Score=188.97  Aligned_cols=161  Identities=21%  Similarity=0.403  Sum_probs=130.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....++|+|+|.+|+|||||+++|++..+...+.++.+..+.  .+...  .+.+.+|||||++.+...+..++.++|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            445799999999999999999999998887666677665543  33333  46789999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNV  178 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i  178 (203)
                      ++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+...     ..++++++|||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            999999999999999888888766433 68999999999999763  33444433322     23467999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIYA  191 (203)
Q Consensus       179 ~~~~~~i~~~~~~  191 (203)
                      +++|++|.+.+..
T Consensus       173 ~~l~~~l~~~~~~  185 (188)
T 1zd9_A          173 DITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.1e-30  Score=187.02  Aligned_cols=155  Identities=21%  Similarity=0.261  Sum_probs=128.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|||||||+++|.+..+.. +.++.+.  ....+.+++  +.+.+|||||++.+..++..+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999988753 3355444  445666776  778999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH------------cCCeEEEEecC
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED------------QGLFFSEASAL  173 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa~  173 (203)
                      |+|++++++++.+..|+..+..... .+.|+++|+||+|+.+  .+..+++.+.+..            .++++++|||+
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  174 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV  174 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence            9999999999999999888766433 6899999999999976  5677777776543            34679999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 048709          174 NGDNVDTAFFRLLQE  188 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~  188 (203)
                      +|.|++++|++|.+.
T Consensus       175 ~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          175 MRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTBSHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHhh
Confidence            999999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-30  Score=187.19  Aligned_cols=161  Identities=24%  Similarity=0.442  Sum_probs=127.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|.++.+. .+.+|.+.  ....+.+++  +.+.+|||||++.+...+..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988776 44455543  334455555  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+  ....+++.+...     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            99999999999999999888876532 6899999999999976  445566655543     245689999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048709          180 TAFFRLLQEIYALS  193 (203)
Q Consensus       180 ~~~~~i~~~~~~~~  193 (203)
                      +++++|++.+....
T Consensus       167 ~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          167 QGLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999875543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=9.9e-31  Score=189.90  Aligned_cols=155  Identities=21%  Similarity=0.268  Sum_probs=123.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|++|||||||+++|.+..+.. +.+|.+..  ...+.+++  +.+.+|||||++.+..++..+++++|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999887643 33555443  34556666  688999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----------------cCCeEE
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----------------QGLFFS  168 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~  168 (203)
                      |+|+++++++..+..|+..+..... .++|+++|+||+|+.+  .+..+++.+++..                 .+++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            9999999999999999888876533 6899999999999976  5677888877653                 345799


Q ss_pred             EEecCCCCCHHHHHHHHHHH
Q 048709          169 EASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       169 ~~sa~~~~~i~~~~~~i~~~  188 (203)
                      +|||++|.|++++|++|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.4e-30  Score=186.52  Aligned_cols=159  Identities=23%  Similarity=0.437  Sum_probs=126.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|.+|||||||+++|.+..+.. +.++.+  +....+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCc-ccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456999999999999999999999886533 334544  3344555554  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+...     ..++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            99999999999999888887755433 67999999999999763  34444443321     234679999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++|+++.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=6.6e-31  Score=185.96  Aligned_cols=158  Identities=22%  Similarity=0.382  Sum_probs=127.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+++|.+|+|||||+++|.++.+.. +.++.+  .....+.+++  ..+.+|||||++.+...+..+++++|++++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            45999999999999999999999888753 335544  3445555553  678999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+..     ...+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  158 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence            9999999999999888887766543 68999999999999763  3334443332     23456899999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      +|+++.+.+.+
T Consensus       159 l~~~l~~~i~~  169 (171)
T 1upt_A          159 AMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3.9e-30  Score=180.89  Aligned_cols=155  Identities=22%  Similarity=0.423  Sum_probs=123.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|.+|+|||||+++|+++.+.. +.+|.+  .....+..+  .+.+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 345554  333344443  367899999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.+...     ..++++++|||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999988888876543 268999999999999763  33444433221     234679999999999999999


Q ss_pred             HHHHHHHH
Q 048709          183 FRLLQEIY  190 (203)
Q Consensus       183 ~~i~~~~~  190 (203)
                      +++.+.+.
T Consensus       154 ~~l~~~i~  161 (164)
T 1r8s_A          154 DWLSNQLR  161 (164)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHh
Confidence            99998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=6.7e-30  Score=182.84  Aligned_cols=160  Identities=22%  Similarity=0.381  Sum_probs=127.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|++|||||||+++|.++.+ ..+.++.+.  ....+.+++  ..+.+|||||.+.+...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4579999999999999999999998877 344456553  344455554  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+....     .+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999988888877654 37899999999999976  3455566554432     23579999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 048709          180 TAFFRLLQEIYAL  192 (203)
Q Consensus       180 ~~~~~i~~~~~~~  192 (203)
                      +++++|.+.+.+.
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=1.2e-29  Score=183.38  Aligned_cols=158  Identities=20%  Similarity=0.407  Sum_probs=121.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|+++.+.. +.+|.+  +....+..++  +.+.+|||||++.+...+..+++++|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            356999999999999999999999887653 334444  3444455544  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+...     ..++++++|||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            99999999999999888888765433 67999999999999763  33444433222     234579999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          180 TAFFRLLQEIY  190 (203)
Q Consensus       180 ~~~~~i~~~~~  190 (203)
                      ++|++|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1.1e-30  Score=187.48  Aligned_cols=166  Identities=19%  Similarity=0.333  Sum_probs=122.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CCccCCCCCcceeeEEEEEEE---CCEEEEEEEEeCCCchhhhhhhHhhhcCCc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN--EFCFDSKSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQERYRAVTSAYYRGAL  102 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d  102 (203)
                      .+||+++|++|||||||+++|.+.  .+...+.+|.+.++....+.+   ++..+.+.+|||+|++.+..+...++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  444445577777666555443   345678999999999999999999999999


Q ss_pred             EEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC---HHHHHHHHHHcCCe----EEEEecCC
Q 048709          103 GAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS---AEDVVEFAEDQGLF----FSEASALN  174 (203)
Q Consensus       103 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~  174 (203)
                      ++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+.+.+.   .+....++...+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57888999988876654 578999999999997643221   22334555556776    99999999


Q ss_pred             CC-CHHHHHHHHHHHHHHhhc
Q 048709          175 GD-NVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       175 ~~-~i~~~~~~i~~~~~~~~~  194 (203)
                      |. +++++++.|.+.+.....
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC--
T ss_pred             CchhHHHHHHHHHHHHhcccc
Confidence            97 999999999988776443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.97  E-value=4.6e-29  Score=194.22  Aligned_cols=164  Identities=29%  Similarity=0.432  Sum_probs=142.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|.+|+|||||++++++..+...+.++.+.. ....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            346999999999999999999999988877776666443 3456678889999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|||++++.++..+. .|+..+.... .++|+++|+||+|+...            +.+..+++.+++...++ ++++||
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999986 6777776654 48999999999998653            46788899999999997 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~  191 (203)
                      |++|.|++++|++|.+.+..
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.1e-32  Score=199.41  Aligned_cols=162  Identities=29%  Similarity=0.451  Sum_probs=135.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999998887666656554333 444566777788999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHHcCC-eEEEEe
Q 048709          106 VVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW------------AVSAEDVVEFAEDQGL-FFSEAS  171 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  171 (203)
                      +|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..            .+..+++.+++...++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999886 6777666543 378999999999997542            4556677788888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~  189 (203)
                      |++|.|++++|++|++.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=2.4e-30  Score=186.31  Aligned_cols=160  Identities=21%  Similarity=0.347  Sum_probs=128.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+++|.+|+|||||+++|.++.+.. +.+|.+  .....+..++  ..+.+|||||++.+...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            456999999999999999999999887654 335554  3344455554  67899999999999988899999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  179 (203)
                      +|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.  ...+++.+..     ...++++++|||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            99999999999998888887766443 68999999999999763  3334443332     2234689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 048709          180 TAFFRLLQEIYAL  192 (203)
Q Consensus       180 ~~~~~i~~~~~~~  192 (203)
                      ++++++.+.+.+.
T Consensus       173 ~l~~~l~~~i~~~  185 (189)
T 2x77_A          173 EGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=4.6e-30  Score=186.02  Aligned_cols=162  Identities=19%  Similarity=0.220  Sum_probs=122.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE--EE-CCEEEEEEEEeCCCchhhhhhh---Hh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV--TI-NSKIIKAQIWDTAGQERYRAVT---SA   96 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~~~~~~---~~   96 (203)
                      ......+||+++|.+|||||||++++.+.....   ++.+.++.....  .+ ++..+.+.+|||||++.|....   ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            445678999999999999999999888753322   333333333222  23 2556789999999999987776   89


Q ss_pred             hhcCCcEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHHHH----Hc
Q 048709           97 YYRGALGAVVVYDITKR--QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEFAE----DQ  163 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~  163 (203)
                      +++++|++++|||+++.  +++..+..|+..+... ..++|+++|+||+|+.+.       +.+..++..+++.    ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999999996  7777777777776433 368999999999998652       3344555667777    67


Q ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          164 GLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       164 ~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ++++++|||++ .|++++|+.+++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            88999999999 99999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=3.5e-28  Score=180.10  Aligned_cols=171  Identities=19%  Similarity=0.138  Sum_probs=120.6

Q ss_pred             CCCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc------hhh---
Q 048709           20 MIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ------ERY---   90 (203)
Q Consensus        20 ~~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------~~~---   90 (203)
                      .+|...+..++|+|+|.+|+|||||+++|++..+.....+..+..........++  ..+.+|||||.      +..   
T Consensus        21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~   98 (228)
T 2qu8_A           21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIE   98 (228)
T ss_dssp             -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHH
T ss_pred             cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHH
Confidence            4454446679999999999999999999999887543333333444444444444  57899999998      321   


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHHcC-
Q 048709           91 RAVTSAYYRGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE---DVVEFAEDQG-  164 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~-  164 (203)
                      ......++..+|++++|+|++++.++..  ...|+..+... ..+.|+++|+||+|+.+.+.+..+   ...+++...+ 
T Consensus        99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A           99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence            1123445788999999999999876542  23455544432 247899999999999876566554   4566667776 


Q ss_pred             -CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          165 -LFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       165 -~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                       +++++|||++|.|++++|++|.+.+...+
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999887643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=2.2e-28  Score=172.52  Aligned_cols=153  Identities=19%  Similarity=0.190  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc--
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR--   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~--   99 (203)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...|+.  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            48999999999999999999998776555545555565666666665  468999999987664      34456664  


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      ++|++++|+|+++.+.   ...|+..+..   .+.|+++|+||+|+...+.+.. +..+++...+++++++||++|.|++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence            8999999999998654   3346555544   3789999999999875444432 4667788888999999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          180 TAFFRLLQEI  189 (203)
Q Consensus       180 ~~~~~i~~~~  189 (203)
                      ++|+++.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=8.5e-28  Score=176.22  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=114.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-EEEEEEEeCCCchhhhh-hhHhhhcCCcE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-IIKAQIWDTAGQERYRA-VTSAYYRGALG  103 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~  103 (203)
                      ...++|+++|.+|+|||||+++|++..+...+. +.+....  .+.+++. .+.+.+|||||++.+.. ++..|++++|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            356999999999999999999999988766664 3333333  3555543 57899999999999987 78889999999


Q ss_pred             EEEEEeCCCHH-HHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH------------------
Q 048709          104 AVVVYDITKRQ-SFDHVARGVEELRAH---ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAE------------------  161 (203)
Q Consensus       104 ~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------------  161 (203)
                      +++|+|+++.. ++.....++..+...   ...++|+++|+||+|+....  ..++..+...                  
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~s~~~  159 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK--SAKLIQQQLEKELNTLRVTRSAAPSTLD  159 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC--CHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc--cHHHHHHHHHHHHHHHhccchhcccccc
Confidence            99999999854 455555544443322   23579999999999997642  2222222111                  


Q ss_pred             -------------------Hc--CCeEEEEecCCC------CCHHHHHHHHHHH
Q 048709          162 -------------------DQ--GLFFSEASALNG------DNVDTAFFRLLQE  188 (203)
Q Consensus       162 -------------------~~--~~~~~~~sa~~~------~~i~~~~~~i~~~  188 (203)
                                         ..  .++|++|||++|      .|++++|++|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                               11  567999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=190.83  Aligned_cols=167  Identities=26%  Similarity=0.306  Sum_probs=122.9

Q ss_pred             CCCCCeeeEEEEEcCC---------CCcHHHHHHHHhc---CCCccCCCCCc-ceeeEEEE--------------EEECC
Q 048709           22 PDKIDYVFKVVVIGDS---------AVGKSQILSRFTK---NEFCFDSKSTI-GVEFQTRT--------------VTINS   74 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~   74 (203)
                      +......+||+|+|.+         |||||||+++|++   ..+...+.++. +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3345567999999999         9999999999998   45555554543 33322221              12456


Q ss_pred             EEEEEEEEe-----------------------CCCchhhhhhhHhhhc---------------------CCcEEEEEEeC
Q 048709           75 KIIKAQIWD-----------------------TAGQERYRAVTSAYYR---------------------GALGAVVVYDI  110 (203)
Q Consensus        75 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~  110 (203)
                      ..+.+.+||                       ++|++.|..++..++.                     ++|++++|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            778899999                       5556666666666666                     79999999999


Q ss_pred             CCH--HHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHHHH
Q 048709          111 TKR--QSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       111 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +++  .+++.+..|+..+... ...++|+++|+||+|+...+.+  +++.+++.. .+++++++||++|.|++++|++|+
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  9999999999888765 3367999999999999764333  567777776 488999999999999999999998


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       251 ~~l~  254 (255)
T 3c5h_A          251 QLID  254 (255)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=5.5e-28  Score=172.04  Aligned_cols=157  Identities=18%  Similarity=0.205  Sum_probs=122.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...++|+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++.  .+.+|||||++.+..++..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45689999999999999999999998887776666666666666777774  4679999999999988888999999999


Q ss_pred             EEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC---------CeEEEEecC
Q 048709          106 VVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG---------LFFSEASAL  173 (203)
Q Consensus       106 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~  173 (203)
                      +|+|+++   ..+++.+    ..+   ...++|+++|+||+|+...   ..+++.......+         ++++++||+
T Consensus        84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            9999988   4444332    222   2257899999999999752   3344444333221         589999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhc
Q 048709          174 NGDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~~~  194 (203)
                      +|.|++++|++|.+.+...+.
T Consensus       154 ~~~gv~~l~~~l~~~~~~~~~  174 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSEMEEL  174 (178)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHhhhhhcc
Confidence            999999999999988766544

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=4.9e-28  Score=186.72  Aligned_cols=160  Identities=18%  Similarity=0.269  Sum_probs=126.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-----hhhhHhhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-----RAVTSAYY   98 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~   98 (203)
                      ..+||+++|.+|||||||+++|+++...   ..+.+|.+.  ....+.+++ .+.+.+|||||++.+     ......++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~--~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDV--EHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSE--EEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccce--EEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999887332   233344443  344445544 578999999999988     67888899


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCc--ccC----CCHHHHHHHHHHcC---CeE
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVD--MWA----VSAEDVVEFAEDQG---LFF  167 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  167 (203)
                      +++|++++|+|++++++++.+..|...+....  .+++|+++|+||+|+.+  .+.    +..+++.+++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755443322  36799999999999976  333    55577888888887   799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 048709          168 SEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       168 ~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ++|||++ .++.++|..+++.+.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999988887553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=8.8e-28  Score=173.51  Aligned_cols=159  Identities=20%  Similarity=0.181  Sum_probs=110.3

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhhh
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRAV   93 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~   93 (203)
                      +....++|+|+|.+|+|||||+++|++..+.....++.+.+........++   .+.+|||||          ++.+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            345679999999999999999999999875544445555444444444444   589999999          7778888


Q ss_pred             hHhhhcCC---cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCH--HHHHH-HHHHcCCeE
Q 048709           94 TSAYYRGA---LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSA--EDVVE-FAEDQGLFF  167 (203)
Q Consensus        94 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~  167 (203)
                      ...++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+...+....  +++.+ +....++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            88888777   9999999999876655532 2222222   5789999999999976433221  23333 222346789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q 048709          168 SEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       168 ~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      +++||++|.|+++++++|.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-27  Score=184.04  Aligned_cols=158  Identities=21%  Similarity=0.402  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..++|+|+|.+|+|||||+++|.+..+.... +|.+..  ...+...+  +.+.||||||++.+..+...+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988865443 444433  33344444  678999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~  180 (203)
                      |||++++.++..+..++..+..... .++|+++|+||+|+.+.  ...+++......     .+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            9999999999999888777655443 68999999999999763  344444443322     345799999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      +|++|++.+.+
T Consensus       317 l~~~l~~~l~~  327 (329)
T 3o47_A          317 GLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=1e-27  Score=172.37  Aligned_cols=159  Identities=21%  Similarity=0.227  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC-----------chhhhhhhHhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG-----------QERYRAVTSAY   97 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~   97 (203)
                      ++|+++|.+|+|||||+++|.+..+...+.++.+...  ..+...    .+.+|||||           ++.+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887766655544333  333333    578999999           67777777777


Q ss_pred             hcC-CcEEEEEEeCCCHHHHHHH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCe
Q 048709           98 YRG-ALGAVVVYDITKRQSFDHV-ARGVEE--------L-RAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLF  166 (203)
Q Consensus        98 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  166 (203)
                      +.. ++++++|+++.+..++..+ ..|...        + ......++|+++|+||+|+....   .++..+++...+.+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6666666666666666655 444331        1 22222579999999999997643   56677888887764


Q ss_pred             -------EEEEecCCCCCHHHHHHHHHHHHHHhhccc
Q 048709          167 -------FSEASALNGDNVDTAFFRLLQEIYALSKKE  196 (203)
Q Consensus       167 -------~~~~sa~~~~~i~~~~~~i~~~~~~~~~~~  196 (203)
                             +++|||++|.|++++|+++.+.+.+.++++
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  189 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGRR  189 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC----
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhccc
Confidence                   799999999999999999999988766543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=4.3e-27  Score=168.94  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=123.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR-   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   99 (203)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+.....+..++  ..+.+|||||+..+.      .+...++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999999776555556666666666676665  568999999987664      34555664 


Q ss_pred             -CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          100 -GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       100 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                       .+|++++|+|+++.   +....|+..+..   .+.|+++|+||+|+...+.+. ++..+++...+++++++||++|.|+
T Consensus        84 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGGH---HHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchhH---HHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence             59999999999864   445566666554   478999999999987644443 3567778888999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 048709          179 DTAFFRLLQEIYALS  193 (203)
Q Consensus       179 ~~~~~~i~~~~~~~~  193 (203)
                      +++|+++.+.+....
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.2e-26  Score=162.37  Aligned_cols=150  Identities=16%  Similarity=0.161  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh-------hhhhhHhhhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER-------YRAVTSAYYRG  100 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~  100 (203)
                      .||+++|.+|+|||||+++|.+.... ....+..+.+.....+..++.  .+.+|||||...       +......++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988754 233344445556666666664  678999999876       34556678899


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD  179 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  179 (203)
                      +|++++|+|++++.+...  .++......  .+.|+++|+||+|+.+.    .+++.+++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998533222  222222222  47899999999999764    23344455 5666 79999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          180 TAFFRLLQEI  189 (203)
Q Consensus       180 ~~~~~i~~~~  189 (203)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=2.2e-27  Score=168.51  Aligned_cols=154  Identities=23%  Similarity=0.222  Sum_probs=114.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------h--hHhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------V--TSAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~--~~~~   97 (203)
                      ..++|+++|.+|+|||||+++|.+.... ....++.+.++....+.+++.  .+.+|||||+..+..      +  ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987643 233345556666677777774  478999999754221      1  1246


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      ++.+|++++|+|++++.+++. ..|+..+......++|+++|+||+|+.+...       .++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            899999999999998777653 4677766665556799999999999854211       11223467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIY  190 (203)
Q Consensus       178 i~~~~~~i~~~~~  190 (203)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.8e-26  Score=173.73  Aligned_cols=155  Identities=16%  Similarity=0.164  Sum_probs=120.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYY--   98 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--   98 (203)
                      ..++|+++|.+|||||||+|+|++..+.....+..+.......+...+  ..+.+|||||...+..      +...|+  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            569999999999999999999999887655556555555555555544  6789999999876653      335555  


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      ..+|++++|+|+++.++..   .|...+..   .++|+++++||+|+...+.+.. +..+++...+++++++||++|.|+
T Consensus        82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence            5899999999999865532   34444443   4789999999999876444432 467788888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIY  190 (203)
Q Consensus       179 ~~~~~~i~~~~~  190 (203)
                      +++++++.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=2.2e-26  Score=177.57  Aligned_cols=165  Identities=17%  Similarity=0.076  Sum_probs=124.8

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhh----------h
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERY----------R   91 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~   91 (203)
                      ++.+..-.|+++|.+|||||||+|+|++.++..... +.++..........+ ...++.+|||||...+          .
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            345677999999999999999999999988764332 223333333333443 1367899999997443          3


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEE
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSE  169 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  169 (203)
                      .....++..+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+........+.+..+....+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            5566788999999999999998777776666666655   478999999999997433555666777777765  78999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 048709          170 ASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       170 ~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +||++|.|++++++++.+.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999987754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=4.9e-26  Score=164.06  Aligned_cols=158  Identities=17%  Similarity=0.160  Sum_probs=114.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC----------chhhhh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG----------QERYRA   92 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~   92 (203)
                      .+....++|+|+|.+|+|||||+++|++...... .++.+.+........+.   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            3445678999999999999999999999874333 24444444443333333   477999999          667777


Q ss_pred             hhHhhhcCC---cEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHc-C
Q 048709           93 VTSAYYRGA---LGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQ-G  164 (203)
Q Consensus        93 ~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~-~  164 (203)
                      +...+++.+   |++++|+|+++..+  ...+..|+..      .+.|+++|+||+|+.+..  ....+++.+++... .
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            777787766   99999999987533  2233333322      268999999999997532  23334556666653 4


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          165 LFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       165 ~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ++++++||++|.|++++|++|.+.+.
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=7.6e-27  Score=175.58  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh----------hhHhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA----------VTSAYY   98 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   98 (203)
                      .+|+++|.+|||||||+|+|++........+..+.+.....+.+++.  .+.+|||||...+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998876666677777777777777775  689999999766543          455677


Q ss_pred             --cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           99 --RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        99 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                        ..+|++++|+|+++.++...+..+   +.   ..+.|+++|+||+|+........ ....+....+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              899999999999997655443322   22   24789999999999875433222 3455677789999999999999


Q ss_pred             CHHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQE  188 (203)
Q Consensus       177 ~i~~~~~~i~~~  188 (203)
                      |++++++++.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.94  E-value=1.4e-26  Score=175.42  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=116.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------hhhHhhhc-
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------AVTSAYYR-   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-   99 (203)
                      ..++|+++|.+|||||||+|+|++........+..+.+  .....++. ...+.+|||||...+.      .+...|+. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            35899999999999999999999876544444443333  33444555 5678999999987765      45566665 


Q ss_pred             -CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          100 -GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       100 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                       .+|++++|+|+++.++.   ..|...+..   .++|+++++||+|+...+.+. .+...++...+++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986554   344444444   478999999999987543333 3567778888999999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          179 DTAFFRLLQEI  189 (203)
Q Consensus       179 ~~~~~~i~~~~  189 (203)
                      +++|+++.+.+
T Consensus       152 ~el~~~i~~~~  162 (272)
T 3b1v_A          152 DQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.9e-27  Score=182.51  Aligned_cols=155  Identities=20%  Similarity=0.212  Sum_probs=117.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCcc---CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh---hhHhhhcCCcE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCF---DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA---VTSAYYRGALG  103 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~  103 (203)
                      ||+++|..|+|||||++++.+...+.   ...+|.+.++..    ++ ..+++++|||+|+++|..   ....|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887654332   244666666543    22 347899999999999964   46889999999


Q ss_pred             EEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHHHHH----cCCeEEEE
Q 048709          104 AVVVYDITKR--QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAEDVVEFAED----QGLFFSEA  170 (203)
Q Consensus       104 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  170 (203)
                      +|+|||++++  ++...+..|+..+... .+++|+++++||+|+...       +++..++..+++..    .++++++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999997  3444444445544433 368999999999999753       23455556666664    67899999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ||++ .+|.++|..+++.+..
T Consensus       155 SAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSST
T ss_pred             ccCC-CcHHHHHHHHHHHHHh
Confidence            9998 5899999999887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=5.6e-27  Score=193.33  Aligned_cols=164  Identities=20%  Similarity=0.214  Sum_probs=124.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEE------EEE--CCEEEEEEEEeCCCchhhhhhhHh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRT------VTI--NSKIIKAQIWDTAGQERYRAVTSA   96 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~g~~~~~~~~~~   96 (203)
                      ....+||+++|.+|||||||+++|++..+...+.++.+..+....      +.+  ++..+.+.+|||||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            345799999999999999999999999887777777777665442      111  233578999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD  176 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~  176 (203)
                      +++.+|++++|+|+++.+   .+..|+..+.... .+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HccCCcEEEEEEeCCCch---hHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999998754   4567777776654 468999999999998877788888999988999999999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 048709          177 NVDTAFFRLLQEIYAL  192 (203)
Q Consensus       177 ~i~~~~~~i~~~~~~~  192 (203)
                      |++++++.+.+.+...
T Consensus       194 gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHP  209 (535)
T ss_dssp             -CTTHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999988664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=2.7e-26  Score=184.87  Aligned_cols=183  Identities=18%  Similarity=0.130  Sum_probs=128.3

Q ss_pred             CCCCCCccccccccccCCCC-----CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEE
Q 048709            4 EMSGDGTDHRHQQQDKMIPD-----KIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   77 (203)
                      +.|+.|++++...+....+.     ..+..++|+++|.+|+|||||+|+|++.... ....+.++.+.....+..++.  
T Consensus       146 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--  223 (436)
T 2hjg_A          146 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--  223 (436)
T ss_dssp             TTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--
T ss_pred             CcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--
Confidence            44666666665554443331     1235699999999999999999999998764 333355555555556666765  


Q ss_pred             EEEEEeCCCc----------hhhhhhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           78 KAQIWDTAGQ----------ERYRAVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        78 ~~~l~D~~g~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      .+.+|||||+          +.|..+.. .+++.+|++++|+|++++.+++.. .|+..+..   .++|+++|+||+|+.
T Consensus       224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~  299 (436)
T 2hjg_A          224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAV  299 (436)
T ss_dssp             EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGS
T ss_pred             EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCC
Confidence            4789999997          55554443 478899999999999998777665 46555543   578999999999998


Q ss_pred             cccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          147 DMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       147 ~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +.+....+++.+...     ..+++++++||++|.|++++|+.+.+.+...
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            755444444433332     2367999999999999999999999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=5.6e-26  Score=167.43  Aligned_cols=167  Identities=15%  Similarity=0.107  Sum_probs=111.2

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC-CEEEEEEEEeCCC----------chhhh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN-SKIIKAQIWDTAG----------QERYR   91 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g----------~~~~~   91 (203)
                      .+....++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.+|||||          ++.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            334567999999999999999999999987321111222223333333333 3335789999999          45556


Q ss_pred             hhhHhhhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHH----
Q 048709           92 AVTSAYYRG---ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAED----  162 (203)
Q Consensus        92 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~----  162 (203)
                      .....|+..   +|++++|+|+++..+... ..++..+..   .++|+++|+||+|+......  ..+++.+.+..    
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            666677766   788999999987533222 234444433   47899999999999763221  12222333333    


Q ss_pred             ---cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          163 ---QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       163 ---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                         ...+++++||++|.|+++++++|.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               5678999999999999999999999876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2.5e-25  Score=168.91  Aligned_cols=157  Identities=20%  Similarity=0.154  Sum_probs=122.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh------hhHhhh--c
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA------VTSAYY--R   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~   99 (203)
                      .++|+++|++|||||||+|+|++........++.+.+.....+..++.  .+.+|||||...+..      ....|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            489999999999999999999998876666677777777777777764  489999999876654      455666  7


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      ++|++++|+|+++.+.   ...++..+...  ...|+++++||+|+........ +...+....+++++++||++|.|++
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             CCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHH
Confidence            8999999999998643   22333444433  2389999999999865433333 2667778889999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 048709          180 TAFFRLLQEIYAL  192 (203)
Q Consensus       180 ~~~~~i~~~~~~~  192 (203)
                      ++++.+.+.+...
T Consensus       155 ~l~~~i~~~~~~~  167 (271)
T 3k53_A          155 ELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=1.2e-25  Score=182.13  Aligned_cols=184  Identities=19%  Similarity=0.149  Sum_probs=130.9

Q ss_pred             CCCCCCccccccccccCCC-----CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCEEE
Q 048709            4 EMSGDGTDHRHQQQDKMIP-----DKIDYVFKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   77 (203)
                      +.++.|++++........+     ......++|+++|.+|+|||||+++|++... .....++++.+.....+..++.  
T Consensus       166 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--  243 (456)
T 4dcu_A          166 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--  243 (456)
T ss_dssp             TTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--
T ss_pred             cccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--
Confidence            3455565555544433322     1234579999999999999999999998753 2334455555555566667765  


Q ss_pred             EEEEEeCCC----------chhhhhhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           78 KAQIWDTAG----------QERYRAVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        78 ~~~l~D~~g----------~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      .+.+|||||          ++.|..... .+++.+|++++|+|+++..+... ..++..+..   .+.|+++|+||+|+.
T Consensus       244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          244 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAV  319 (456)
T ss_dssp             EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGS
T ss_pred             eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcC
Confidence            679999999          667766555 37899999999999988533222 244444443   478999999999998


Q ss_pred             cccCCCHHHHHHHHHHc-----CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          147 DMWAVSAEDVVEFAEDQ-----GLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       147 ~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      +.+....+++.+.+...     .++++++||++|.|++++|+++.+.+....
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  371 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence            76667777777777654     579999999999999999999998876654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=4.3e-26  Score=173.24  Aligned_cols=154  Identities=13%  Similarity=0.130  Sum_probs=117.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR----------AVTSAY   97 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~   97 (203)
                      .++|+++|.+|||||||+|+|++........+..+.+.....+...+  ..+.+|||||...+.          .+...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999887666666666666666666655  457899999977655          223334


Q ss_pred             h--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCC
Q 048709           98 Y--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNG  175 (203)
Q Consensus        98 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  175 (203)
                      +  ..+|++++|+|+++.+....+..+   +...   ++|+++|+||+|+....... .....++...+++++++||++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            3  799999999999987655444333   3332   78999999999986543221 2345667788999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEIY  190 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~  190 (203)
                      .|+++++++|.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999887654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=4.4e-26  Score=167.52  Aligned_cols=144  Identities=17%  Similarity=0.255  Sum_probs=104.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG-  100 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-  100 (203)
                      ....++|+++|++|+|||||+++|.+..+...   +.++.+..+         ....+.+|||||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            45679999999999999999999999876442   223322221         33568999999999998888888877 


Q ss_pred             ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCcccCCC------HHHHHHHHHHcCCe
Q 048709          101 ---ALGAVVVYDIT-KRQSFDHVARGVEELRAH----ADSSIRIILIGNKSDLVDMWAVS------AEDVVEFAEDQGLF  166 (203)
Q Consensus       101 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~  166 (203)
                         +|++++|+|++ ++.++..+..|+..+...    ...++|+++|+||+|+.....+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888888888887777654    34689999999999998754332      34566666667778


Q ss_pred             EEEEecCCCCC
Q 048709          167 FSEASALNGDN  177 (203)
Q Consensus       167 ~~~~sa~~~~~  177 (203)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            88999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=6.9e-24  Score=166.80  Aligned_cols=163  Identities=20%  Similarity=0.208  Sum_probs=123.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh---------hhhHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR---------AVTSA   96 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~   96 (203)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+..++  ..+.+|||||...+.         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998875443334444444444444443  568999999964321         12234


Q ss_pred             hhcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC
Q 048709           97 YYRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN  174 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~  174 (203)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+....  ..+++.+++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE--NIKRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH--HHHHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH--HHHHHHHHHHhcCCCeEEEeCCC
Confidence            556799999999998876  66777788887776543 78999999999997643  23556677778889999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhh
Q 048709          175 GDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~~~~  193 (203)
                      |.|+++++++|.+.+....
T Consensus       320 g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999886643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.92  E-value=1.2e-25  Score=179.38  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-------
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-------   93 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------   93 (203)
                      ..+....++|+|+|.+|+|||||+++|++..+. ....+..+.+.....+.+.+.. .+.+|||||+..+..+       
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence            344566899999999999999999999998764 3333455566666666665543 6899999998776543       


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ...++..+|++++|+|+...+.   ...|+..+...   ++|+++|+||+|+......  +...+++..++++++++||+
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence            3457899999999999944332   34555655553   7899999999999875433  56666677788999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|.|++++|++|.+.+...
T Consensus       179 tg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          179 QKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHhhhhh
Confidence            9999999999999988443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=3.8e-24  Score=167.15  Aligned_cols=124  Identities=15%  Similarity=0.212  Sum_probs=103.8

Q ss_pred             EEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcE
Q 048709           68 RTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRI  136 (203)
Q Consensus        68 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~  136 (203)
                      ..+.++  .+.+.+||++|++.++..+..|+++++++|||+|+++          ..++.....|+..+..... .++|+
T Consensus       186 ~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi  263 (353)
T 1cip_A          186 THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI  263 (353)
T ss_dssp             EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence            344444  4678999999999999999999999999999999998          4678888888888876433 68999


Q ss_pred             EEEEeCCCCCccc---------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          137 ILIGNKSDLVDMW---------------AVSAEDVVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       137 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ++++||+|+...+               .+..+++.+++.           ..++.+++|||+++.||+++|+++.+.+.
T Consensus       264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9999999985322               367888888886           35678999999999999999999999987


Q ss_pred             Hhh
Q 048709          191 ALS  193 (203)
Q Consensus       191 ~~~  193 (203)
                      ...
T Consensus       344 ~~~  346 (353)
T 1cip_A          344 KNN  346 (353)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            644

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=4.6e-24  Score=172.74  Aligned_cols=157  Identities=19%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT--------SAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   97 (203)
                      ..++|+++|.+|+|||||+|+|++.+.. ....+.++.+.....+.+++  +.+.+|||||...+....        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4589999999999999999999988643 33335555666666667776  468999999987665433        336


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +..+|++++|+|++++.+++.+..+...+...  .+.|+++|+||+|+......   +..++......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence            89999999999999987765333333322222  27899999999999764322   22334433247899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIY  190 (203)
Q Consensus       178 i~~~~~~i~~~~~  190 (203)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999886

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=1e-23  Score=161.95  Aligned_cols=155  Identities=19%  Similarity=0.147  Sum_probs=108.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchh--------hhhhhHhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQER--------YRAVTSAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~   97 (203)
                      ...+|+++|.+|+|||||+|+|++.++.... .+.++..........+  ..++.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            4568999999999999999999998876432 2222222222223333  36789999999765        44556678


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc--CCeEEEEecCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGV-EELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ--GLFFSEASALN  174 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~  174 (203)
                      ++.+|++++|+|++++.+...  .|+ ..+... ..+.|+++|+||+|+.....    ++.+.+..+  ..+++++||++
T Consensus        84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPED--ELVARALKPL-VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTC
T ss_pred             HhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCC
Confidence            899999999999987644332  343 334332 24789999999999975322    123333332  35799999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEIY  190 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~  190 (203)
                      |.|++++++.+.+.+.
T Consensus       157 g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          157 ERQVAELKADLLALMP  172 (301)
T ss_dssp             HHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHhcc
Confidence            9999999999987653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=3e-24  Score=167.15  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=121.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhhHhhh---cCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVTSAYY---RGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~~d  102 (203)
                      +|+|+|.+|||||||+++|++........+.++..+....+.+++ ...+.+|||||...    +..+...|+   ..+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            689999999999999999998765444434444555555565553 13689999999643    223334444   4599


Q ss_pred             EEEEEEeCCC---HHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCC
Q 048709          103 GAVVVYDITK---RQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNG  175 (203)
Q Consensus       103 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~  175 (203)
                      ++++|+|+++   +.+++.+..|+..+.....  .++|+++|+||+|+...    .+.+.++.....  .+++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   7788888888888877653  57999999999999753    244566666665  68999999999


Q ss_pred             CCHHHHHHHHHHHHHHhhc
Q 048709          176 DNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~~~~  194 (203)
                      .|+++++++|.+.+.+...
T Consensus       315 ~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHhhCcc
Confidence            9999999999998866443

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=1.1e-23  Score=170.67  Aligned_cols=153  Identities=20%  Similarity=0.270  Sum_probs=117.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch-hhhh--------hhHhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-RYRA--------VTSAY   97 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~   97 (203)
                      .++|+++|.+|+|||||+|+|++.+.. ....+.++.++....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987643 34445666667667777776  457999999987 5432        23467


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +..+|++++|+|++++.+++.. .++..+     .+.|+++|+||+|+..  ....+++.+++ ..+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~--~~~~~~~~~~~-~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVE--KINEEEIKNKL-GTDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCC--CCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECccccc--ccCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence            8999999999999987666554 222322     3789999999999975  34555665543 2457899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIYA  191 (203)
Q Consensus       178 i~~~~~~i~~~~~~  191 (203)
                      +++++++|.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999997653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.90  E-value=8.3e-23  Score=152.24  Aligned_cols=165  Identities=12%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC--CcceeeEEEEEEECCEEEEEEEEeCCCc-----------hh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTINSKIIKAQIWDTAGQ-----------ER   89 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~   89 (203)
                      ......++|+|+|.+|+|||||+|+|++........+  +.+..........++.  .+.+|||||.           ..
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence            3445679999999999999999999999887655444  4445555556666664  5789999993           23


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC------HHHHHHHHH
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQS--FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS------AEDVVEFAE  161 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~  161 (203)
                      +......++.++|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+.....+.      .+.+.+++.
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            44444556678899999999876332  22222222222221  245899999999987643322      246777888


Q ss_pred             HcCCeEEEEecCCC-----CCHHHHHHHHHHHHHH
Q 048709          162 DQGLFFSEASALNG-----DNVDTAFFRLLQEIYA  191 (203)
Q Consensus       162 ~~~~~~~~~sa~~~-----~~i~~~~~~i~~~~~~  191 (203)
                      ..+..++.++...+     .++.++|+.+.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88888888877654     6888888888777654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=5.2e-23  Score=158.67  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=103.5

Q ss_pred             EEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCC
Q 048709           66 QTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSI  134 (203)
Q Consensus        66 ~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~  134 (203)
                      ....+.+++  +.+++||++|++.++..+..|+++++++|+|+|++          +..++.....|+..+..... .++
T Consensus       158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            334444444  78999999999999999999999999999999665          56778888888888766544 689


Q ss_pred             cEEEEEeCCCCCccc----------------CCCHHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          135 RIILIGNKSDLVDMW----------------AVSAEDVVEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       135 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |+++++||+|+.+.+                ..+.+++.+++.          ..++.+++|||+++.||+.+|..+.+.
T Consensus       236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            999999999986533                467888888853          356778999999999999999999999


Q ss_pred             HHHhhc
Q 048709          189 IYALSK  194 (203)
Q Consensus       189 ~~~~~~  194 (203)
                      +....-
T Consensus       316 Il~~~l  321 (327)
T 3ohm_A          316 ILQLNL  321 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHHhH
Confidence            987543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=1.2e-22  Score=163.85  Aligned_cols=152  Identities=22%  Similarity=0.253  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER---------YRAVTSAYY   98 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~   98 (203)
                      .+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999988754 233355555666666777775  468999999653         344566789


Q ss_pred             cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH-HHHHHHcCC-eEEEEecCC
Q 048709           99 RGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV-VEFAEDQGL-FFSEASALN  174 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~  174 (203)
                      +.+|++++|+|++++.+..+  +..|+.   .   .++|+++|+||+|+...  . ..++ .++. ..++ +++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987543322  223322   2   36899999999998642  1 1233 3443 4565 789999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 048709          175 GDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~~~  192 (203)
                      |.|+.++++++.+.+.+.
T Consensus       150 g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHhcccc
Confidence            999999999999988753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.89  E-value=7.7e-23  Score=160.30  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=94.7

Q ss_pred             EEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhcC-CCCcEE
Q 048709           69 TVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHAD-SSIRII  137 (203)
Q Consensus        69 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~i  137 (203)
                      .+.+++  +.+.+|||+|++.++..+..|+++++++|||+|+++          ..++.....|+..+..... .++|++
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI  272 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII  272 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence            344443  678999999999999999999999999999999999          6789998889888876533 689999


Q ss_pred             EEEeCCCCCccc----------------CCCHHHHHHHHH-----------HcCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          138 LIGNKSDLVDMW----------------AVSAEDVVEFAE-----------DQGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       138 vv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      +++||+|+...+                .+..+++.+++.           ...+.+++|||+++.||+++|+++.+.+.
T Consensus       273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            999999986422                266788887762           34578999999999999999999999887


Q ss_pred             Hhh
Q 048709          191 ALS  193 (203)
Q Consensus       191 ~~~  193 (203)
                      ...
T Consensus       353 ~~~  355 (362)
T 1zcb_A          353 HDN  355 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=3.9e-22  Score=156.67  Aligned_cols=162  Identities=19%  Similarity=0.152  Sum_probs=111.2

Q ss_pred             eeE-EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc---------hhhhhhhHhh
Q 048709           28 VFK-VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ---------ERYRAVTSAY   97 (203)
Q Consensus        28 ~~~-i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~~~~~   97 (203)
                      .++ |+++|.+|+|||||+|+|++........+..+.++....+.+++  ..+.+|||+|.         +.+..... .
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence            345 99999999999999999999876544445555667777788887  45789999996         22333333 5


Q ss_pred             hcCCcEEEEEEeCCCHH--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHHHc---CCeEEEEe
Q 048709           98 YRGALGAVVVYDITKRQ--SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV-SAEDVVEFAEDQ---GLFFSEAS  171 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s  171 (203)
                      +..+|++++|+|++++.  ..+.+..+...+......+.|+++|+||+|+.+.... ..+.+..++...   ..+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78999999999999876  5556655655555544467899999999998753210 011232333444   34689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 048709          172 ALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |++|.|+++++++|.+.+...
T Consensus       335 A~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhccc
Confidence            999999999999999877653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=6.9e-23  Score=160.00  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCC
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSIRIILIGNKS  143 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  143 (203)
                      ..+.+.+|||+|++.++..+..|+++++++|+|+|++          +..+++....|+..+..... .++|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5789999999999999999999999999999999998          77899999999988876533 689999999999


Q ss_pred             CCCcccC--C-------------------CHHHHHHHHHH----------------cCCeEEEEecCCCCCHHHHHHHHH
Q 048709          144 DLVDMWA--V-------------------SAEDVVEFAED----------------QGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       144 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+.+.+.  +                   ..+++.+++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   14666666443                234578999999999999999999


Q ss_pred             HHHHHhh
Q 048709          187 QEIYALS  193 (203)
Q Consensus       187 ~~~~~~~  193 (203)
                      +.+....
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=8.9e-23  Score=164.53  Aligned_cols=161  Identities=21%  Similarity=0.143  Sum_probs=109.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh-----------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV-----------   93 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------   93 (203)
                      +..++|+++|++|||||||+|+|++.... ....+.++.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            34699999999999999999999987653 233344445555566677775  4689999997433221           


Q ss_pred             -hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-H----HcCCeE
Q 048709           94 -TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFA-E----DQGLFF  167 (203)
Q Consensus        94 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~  167 (203)
                       ...++..+|++++|+|+++..+.... .+...+..   .+.|+++++||+|+.+.+....++..+.. .    ...+++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13467889999999999876554432 22222222   47899999999999765444444443322 2    235789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          168 SEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       168 ~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +++||++|.|++++|+.+.+.+...
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999877654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=5.9e-22  Score=158.13  Aligned_cols=164  Identities=15%  Similarity=0.113  Sum_probs=115.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEE---------E-------EEE---ECCEEEEEEEEeCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQT---------R-------TVT---INSKIIKAQIWDTA   85 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~---------~-------~~~---~~~~~~~~~l~D~~   85 (203)
                      ....++|+++|.+++|||||+++|++.......... ......         .       ...   .......+.+||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            345699999999999999999999985432211000 000000         0       000   01233689999999


Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHHc
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDVVEFAEDQ  163 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~  163 (203)
                      |++.|......++..+|++++|+|+++..++.+...++..+....  ..|+++++||+|+.+....  ..+++.+++...
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998766666667766555442  3589999999999763211  122333333322


Q ss_pred             ---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          164 ---GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       164 ---~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                         +++++++||++|.|+++++++|.+.+..
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence               5789999999999999999999887644

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=8.8e-22  Score=157.34  Aligned_cols=160  Identities=19%  Similarity=0.201  Sum_probs=106.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC---CccCCCC--CcceeeEEEEEEE-------------C--C----EEEEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNE---FCFDSKS--TIGVEFQTRTVTI-------------N--S----KIIKAQI   81 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l   81 (203)
                      ...++|+++|..++|||||+++|++..   +..+..+  |....+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            356999999999999999999998643   2223223  3333333333211             1  1    2368999


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHH
Q 048709           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAED  155 (203)
Q Consensus        82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~  155 (203)
                      |||||++.|.......+..+|++++|+|+++    +++.+.+..    +...  ...|+++++||+|+.+...  ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            9999999988777777888999999999995    455544432    2222  2347999999999976433  23566


Q ss_pred             HHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          156 VVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       156 ~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      +.+++..   .+++++++||++|.|+++++++|.+.+..
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            7777665   36789999999999999999999886653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.89  E-value=2e-23  Score=158.63  Aligned_cols=160  Identities=14%  Similarity=0.194  Sum_probs=93.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC--------CCCcceeeEEEEEEECCEEEEEEEEeCCCch-------hh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS--------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-------RY   90 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~   90 (203)
                      ...++|+|+|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            45799999999999999999999887655432        3444555554544445555789999999962       23


Q ss_pred             hhhh-------Hhhhc-------------CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           91 RAVT-------SAYYR-------------GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        91 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      ..+.       ..|+.             .+|+++++++.+...-...-..++..+..    ++|+++|+||+|+....+
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence            3332       33333             26789999877652111111233333332    789999999999864322


Q ss_pred             C--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          151 V--SAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       151 ~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      .  ..+.+.+.+...+++++.+|++++.|+++++++|.+.+
T Consensus       162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1  12345556667889999999999999999999887754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=5.1e-22  Score=161.48  Aligned_cols=156  Identities=16%  Similarity=0.116  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC-------CccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE-------FCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   99 (203)
                      ..++|+++|.+++|||||+++|++..       ...+..+..+.+.....+.+++  ..+.+|||||++.|......++.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            46999999999999999999999876       2222223333333333444455  57899999999999888888999


Q ss_pred             CCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHHHHHHHHHHc----CCeEEEE
Q 048709          100 GALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAEDVVEFAEDQ----GLFFSEA  170 (203)
Q Consensus       100 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~----~~~~~~~  170 (203)
                      .+|++++|+|+++   +++.+.+.    .+..   .++|+++++||+|+.+..  +...+++.+++...    .++++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            9999999999988   55554442    2222   367889999999997531  12234555666655    5789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ||++|.|+++++++|.+.+..
T Consensus       169 SA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhcC
Confidence            999999999999999998753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=4.4e-23  Score=166.44  Aligned_cols=154  Identities=18%  Similarity=0.185  Sum_probs=105.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhh--------Hhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVT--------SAY   97 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   97 (203)
                      ..++|+++|.+|+|||||+|+|++.+.. ....++++.+.....+.+++  ..+.+|||||...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4689999999999999999999987654 33335555555555666777  457999999976554332        236


Q ss_pred             hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCC
Q 048709           98 YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDN  177 (203)
Q Consensus        98 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  177 (203)
                      +..+|++++|+|++++.+... ..++..+.     ..|+++|+||+|+.......  ...++.  ...+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            789999999999998655444 34444432     36999999999997644332  111111  356899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 048709          178 VDTAFFRLLQEIYAL  192 (203)
Q Consensus       178 i~~~~~~i~~~~~~~  192 (203)
                      +++++++|.+.+...
T Consensus       371 i~eL~~~i~~~~~~~  385 (462)
T 3geh_A          371 IDSLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=3.9e-22  Score=150.34  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=107.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCCCCC-cceeeEEEEEEECCEEEEEEEEeCCCchhhhh----------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDSKST-IGVEFQTRTVTINSKIIKAQIWDTAGQERYRA----------   92 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------   92 (203)
                      ....++|+|+|.+|||||||+++|++.... ....++ .+..........++  ..+.+|||||...+..          
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            345699999999999999999999987743 333333 34444445555555  4689999999755421          


Q ss_pred             -hhHhhhcCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCcccCCCH-------HHHHHHHHH
Q 048709           93 -VTSAYYRGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGN-KSDLVDMWAVSA-------EDVVEFAED  162 (203)
Q Consensus        93 -~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~  162 (203)
                       ....+++.+|++++|+|+++... ...+..++..+.... ...|.++++| |+|+... ....       +++.+++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence             22336789999999999986222 122223333221111 1456777777 9999742 1111       234445655


Q ss_pred             cCCe---E--EEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          163 QGLF---F--SEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       163 ~~~~---~--~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .+..   +  +++||++|.|++++|++|.+.+...
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            5542   2  7899999999999999999988763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=7e-22  Score=163.59  Aligned_cols=160  Identities=18%  Similarity=0.193  Sum_probs=110.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCC--Ccc-----CCC------CCcceeeEE--EEEEE---CCEEEEEEEEeCCCch
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNE--FCF-----DSK------STIGVEFQT--RTVTI---NSKIIKAQIWDTAGQE   88 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~--~~~-----~~~------~~~~~~~~~--~~~~~---~~~~~~~~l~D~~g~~   88 (203)
                      +..+|+++|+.++|||||+++|+...  +..     ...      ...+.+...  ..+.+   ++..+.++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999997621  110     000      111222222  22222   4556889999999999


Q ss_pred             hhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC---
Q 048709           89 RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL---  165 (203)
Q Consensus        89 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  165 (203)
                      .|......++..+|++++|+|+++..+......|.....    .++|+++++||+|+.+..  ..+...++....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999888899999999999999998766555555544432    478999999999997632  23334555556666   


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          166 FFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       166 ~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +++++||++|.|++++++++++.+...
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             eEEEeecccCCCchhHHHHHhhcCCCc
Confidence            489999999999999999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=1.6e-22  Score=155.40  Aligned_cols=157  Identities=21%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCch-hh--------hhhhHh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQE-RY--------RAVTSA   96 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~--------~~~~~~   96 (203)
                      ...+|+++|++|+|||||+|+|++..+.... .+..+.......+..++  .++.+|||||.. ..        ......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3468999999999999999999998765332 22222222222233333  568999999986 22        223345


Q ss_pred             hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCC
Q 048709           97 YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNG  175 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~  175 (203)
                      +++.+|++++|+|+++ -+  ....++.....  ..+.|+++++||+|+........+.+.++....+. .++++||++|
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            6789999999999976 22  22223322222  24789999999999875222223344555555665 6999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEIY  190 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~  190 (203)
                      .|++++++.+.+.+.
T Consensus       160 ~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          160 LNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=2.9e-23  Score=167.26  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch--------hhhhhhHhhhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE--------RYRAVTSAYYRG  100 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~  100 (203)
                      .+|+++|.+|+|||||+|+|++....... .+.+.+..............+.+|||||..        .+......+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            68999999999999999999987765322 333443333333343334578999999975        566667788999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC-eEEEEecCCCCCHH
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL-FFSEASALNGDNVD  179 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~  179 (203)
                      +|++++|+|+.++.+...  .++..+.+  ..++|+++|+||+|+.....    ++.++. ..++ +++++||++|.|+.
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            999999999988655443  23333222  25789999999999865321    112222 3344 78999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++++++.+.+.+
T Consensus       154 ~L~~~i~~~l~~  165 (436)
T 2hjg_A          154 DLLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHHTGGG
T ss_pred             HHHHHHHHhcCc
Confidence            999999988754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=1e-21  Score=157.04  Aligned_cols=161  Identities=21%  Similarity=0.214  Sum_probs=112.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCC---ccCCCC--CcceeeEEEEEEE-------------C--C----EEEEEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEF---CFDSKS--TIGVEFQTRTVTI-------------N--S----KIIKAQ   80 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   80 (203)
                      ....++|+++|..++|||||+++|++...   ..+..+  |....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            35679999999999999999999986432   222223  3333333332211             1  1    136799


Q ss_pred             EEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHH
Q 048709           81 IWDTAGQERYRAVTSAYYRGALGAVVVYDITK----RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAE  154 (203)
Q Consensus        81 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~  154 (203)
                      +|||||++.|.......+..+|++++|+|+++    +++.+.+..    +...  ...|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence            99999999988777777888999999999985    445444432    2222  1357999999999976321  2234


Q ss_pred             HHHHHHHH---cCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          155 DVVEFAED---QGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       155 ~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ++.+++..   .+++++++||++|.|+++++++|.+.+..
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            55566554   46789999999999999999999886654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=1.5e-21  Score=161.42  Aligned_cols=161  Identities=20%  Similarity=0.182  Sum_probs=113.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc-----CC--------CCCcceeeEEEEEEE---CCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCF-----DS--------KSTIGVEFQTRTVTI---NSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~-----~~--------~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~   87 (203)
                      .+..+|+++|+.++|||||+++|+..  .+..     ..        ....+.......+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            35689999999999999999999752  1110     00        011111111112222   455688999999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCC--
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGL--  165 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  165 (203)
                      ..|......++..+|++++|+|+++..+.+....|.....    .++|+++++||+|+.+..  ..+...++....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9998888889999999999999999766666655544332    478999999999997632  22334455555565  


Q ss_pred             -eEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          166 -FFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       166 -~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                       +++++||++|.|+++++++|++.+...
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence             489999999999999999999887653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.87  E-value=1.5e-21  Score=157.12  Aligned_cols=153  Identities=21%  Similarity=0.190  Sum_probs=103.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------cCCCCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-------------------------------FDSKSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|.+++|||||+++|+...-.                               .+..+..+.+.....+..  
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~--   92 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET--   92 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec--
Confidence            45699999999999999999999543210                               111122333333333333  


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---HH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FD---HVARGVEELRAHADSSIR-IILIGNKSDLVD  147 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  147 (203)
                      ....+.+|||||++.|......++..+|++++|+|+++...   ++   +....+..+..   .++| +++++||+|+..
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcc
Confidence            34578999999999999988899999999999999987531   11   12222222222   3566 899999999853


Q ss_pred             cc------CCCHHHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Q 048709          148 MW------AVSAEDVVEFAEDQG------LFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       148 ~~------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~  183 (203)
                      ..      ....+++..++...+      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21      112234445554444      5799999999999998654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=1e-21  Score=155.10  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=97.3

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCC----------HHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCC
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITK----------RQSFDHVARGVEELRAHA-DSSIRIILIGNKSDL  145 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~  145 (203)
                      +.+.+|||+|++.++..+..|+++++++|+|||+++          ..++..+..|+..+.... ..++|+++++||+|+
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL  296 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  296 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence            678999999999999999999999999999999999          889999999999887753 378999999999998


Q ss_pred             CcccC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEEecCCCCCHHHHH
Q 048709          146 VDMWA---V---------------------------SAEDVVEFA-----ED--------QGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       146 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~~~~~i~~~~  182 (203)
                      ...+.   +                           ..+++..|+     ..        ..+.+++|||+++.||+++|
T Consensus       297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF  376 (402)
T 1azs_C          297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF  376 (402)
T ss_dssp             HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred             hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence            54321   1                           145566653     22        24678899999999999999


Q ss_pred             HHHHHHHHHhhc
Q 048709          183 FRLLQEIYALSK  194 (203)
Q Consensus       183 ~~i~~~~~~~~~  194 (203)
                      .++.+.+.....
T Consensus       377 ~~v~~~I~~~~l  388 (402)
T 1azs_C          377 NDCRDIIQRMHL  388 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=2.7e-22  Score=155.16  Aligned_cols=116  Identities=15%  Similarity=0.201  Sum_probs=97.1

Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCC----------CHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCC
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDIT----------KRQSFDHVARGVEELRAHAD-SSIRIILIGNKSD  144 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  144 (203)
                      .+.+++||++|++.++..+..|+++++++|+|+|++          +..++.....|+..+..... .++|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            478999999999999999999999999999999998          67888888888888776544 7899999999999


Q ss_pred             CCccc---------------CCCHHHHHHHHHHc---------------------------CCeEEEEecCCCCCHHHHH
Q 048709          145 LVDMW---------------AVSAEDVVEFAEDQ---------------------------GLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       145 ~~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~sa~~~~~i~~~~  182 (203)
                      +...+               ....+++.+++...                           .+.+++|||+++.||+.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            86421               13566776665432                           3678999999999999999


Q ss_pred             HHHHHHHHH
Q 048709          183 FRLLQEIYA  191 (203)
Q Consensus       183 ~~i~~~~~~  191 (203)
                      ..+.+.+..
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.1e-22  Score=143.51  Aligned_cols=115  Identities=18%  Similarity=0.263  Sum_probs=87.6

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC---CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC-
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD---SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG-  100 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-  100 (203)
                      ....++|+|+|.+|||||||+++|.+..+...   ..++.+         .+.....+.+|||||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35679999999999999999999999875431   112211         11134568899999998887777777765 


Q ss_pred             ---CcEEEEEEeCC-CHHHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCcc
Q 048709          101 ---ALGAVVVYDIT-KRQSFDHVARGVEELRAH----ADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus       101 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~  148 (203)
                         +|++++|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.+.
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence               89999999999 899999888887776554    2358999999999999764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.87  E-value=8.2e-23  Score=160.61  Aligned_cols=161  Identities=14%  Similarity=0.252  Sum_probs=89.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-CC--------CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-SK--------STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ER   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   89 (203)
                      ...++|+|+|++|+|||||+++|++...... +.        ++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3468999999999999999999877543322 11        33333333333444566778999999998       55


Q ss_pred             hhhhhH-------hhhcCC-------------cEEEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           90 YRAVTS-------AYYRGA-------------LGAVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        90 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      +..+..       .|+..+             |+++++++.. ..++..+. .++..    ...++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IHNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TCS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hccCCCEEEEEECCCCCCH
Confidence            665554       555443             3455555432 23333332 23222    2367899999999999764


Q ss_pred             cCCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          149 WAVSA--EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       149 ~~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +++..  +++.+++...+++++++||++|.+ ++.|.++.+.+...
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            43333  466677777889999999999999 88888888887653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=6.3e-22  Score=161.26  Aligned_cols=152  Identities=18%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccC-----------------------------CCCCcceeeEEEEEEECCEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD-----------------------------SKSTIGVEFQTRTVTINSKII   77 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   77 (203)
                      ..++|+++|.+++|||||+++|++......                             .....+.+.......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            469999999999999999999975411000                             001112222222233333446


Q ss_pred             EEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHH------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           78 KAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFD------HVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      .+.||||||++.|......++..+|++++|+|+++.....      +....+..+...  ...|+++++||+|+.+..+.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence            7899999999999999999999999999999999864322      222222222222  23469999999999763333


Q ss_pred             CHHHHH----HHHHHc-----CCeEEEEecCCCCCHHH
Q 048709          152 SAEDVV----EFAEDQ-----GLFFSEASALNGDNVDT  180 (203)
Q Consensus       152 ~~~~~~----~~~~~~-----~~~~~~~sa~~~~~i~~  180 (203)
                      ..+++.    +++...     +++++++||++|.|+.+
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            333333    333333     46899999999999875

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.1e-23  Score=172.14  Aligned_cols=159  Identities=18%  Similarity=0.188  Sum_probs=114.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.++|+++|.+++|||||+++|.+..+.....++.+.++....+..+ ....+.||||||++.|..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            45789999999999999999999877766655555555444444332 12368899999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHH---HHHc--CCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA-VSAEDVVEF---AEDQ--GLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~  180 (203)
                      |+|+++....... ..+..+.   ..++|+++++||+|+.+... ...+++..+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999985443332 2222222   35789999999999875321 111222221   1111  35799999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          181 AFFRLLQEIY  190 (203)
Q Consensus       181 ~~~~i~~~~~  190 (203)
                      +++++...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999988764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=6.9e-21  Score=157.76  Aligned_cols=160  Identities=18%  Similarity=0.229  Sum_probs=108.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEEC----------------CEEEEEEEEeCCCchhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTIN----------------SKIIKAQIWDTAGQERY   90 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~g~~~~   90 (203)
                      +.++|+++|++++|||||+++|++..+........+.+........+                .....++||||||+..|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999998765432211011111111111110                01124899999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-------------H-
Q 048709           91 RAVTSAYYRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-------------A-  153 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~-  153 (203)
                      ..+...++..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+...+...             . 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            9888888999999999999999   666655432    222   478999999999996532110             0 


Q ss_pred             ---------HHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          154 ---------EDVVEFAEDQG---------------LFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       154 ---------~~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                               .++...+...+               ++++++||++|.|+++++++|...+....
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                     01122222222               37999999999999999999998876543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=3.9e-21  Score=157.43  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCC------------------Ccc----CCCCCcceeeEEEEEEECCEEEEEEEEe
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNE------------------FCF----DSKSTIGVEFQTRTVTINSKIIKAQIWD   83 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D   83 (203)
                      ....+|+|+|.+|+|||||+++|+...                  ...    ...+..+.......+...+  ..++|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            346899999999999999999996210                  000    0001122223333444444  6789999


Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      |||+..|......+++.+|++++|+|+++..+......| ..+..   .++|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence            999999998889999999999999999986655554333 33333   4789999999999964

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=6.3e-22  Score=160.27  Aligned_cols=155  Identities=16%  Similarity=0.109  Sum_probs=101.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCC--------chhhhhhhHhhhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG--------QERYRAVTSAYYR   99 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~~~~   99 (203)
                      ..+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+|||||        ++.+......++.
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            579999999999999999999998765332 3444444444445554556789999999        6677778888999


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      .+|++++|+|+.+..+...  .++..+.+.  .++|+++|+||+|+....    +...++.......++++||++|.|+.
T Consensus       102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~~lg~~~~~~iSA~~g~gv~  173 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFYSLGFGEPYPISGTHGLGLG  173 (456)
T ss_dssp             HCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred             hCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHHHcCCCceEEeecccccchH
Confidence            9999999999887432222  233333322  578999999999986521    11222222212256799999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          180 TAFFRLLQEIYA  191 (203)
Q Consensus       180 ~~~~~i~~~~~~  191 (203)
                      ++++.+.+.+..
T Consensus       174 ~L~~~i~~~l~~  185 (456)
T 4dcu_A          174 DLLDAVAEHFKN  185 (456)
T ss_dssp             HHHHHHHTTGGG
T ss_pred             HHHHHHHhhccc
Confidence            999999876643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=3e-21  Score=152.04  Aligned_cols=147  Identities=11%  Similarity=0.053  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      +|+++|.+++|||||+++|+.        +..+.+.....  +......+.+|||||++.|.......+..+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999999999981        11122222222  33233568999999999998777788899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCcccCCC--HHHHHHHHHHc---CCeEEE--EecCC---CCC
Q 048709          110 ITKRQSFDHVARGVEELRAHADSSIRI-ILIGN-KSDLVDMWAVS--AEDVVEFAEDQ---GLFFSE--ASALN---GDN  177 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~---~~~~~~--~sa~~---~~~  177 (203)
                       +. ..+.+..+++..+..   .++|. ++++| |+|+ +.....  .+++.+++...   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 334444555554444   35676 88999 9999 532211  24555555544   368999  99999   999


Q ss_pred             HHHHHHHHHHHHHHh
Q 048709          178 VDTAFFRLLQEIYAL  192 (203)
Q Consensus       178 i~~~~~~i~~~~~~~  192 (203)
                      ++++++.|.+.+...
T Consensus       167 i~~L~~~l~~~~~~~  181 (370)
T 2elf_A          167 VDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999887653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=1.4e-20  Score=151.56  Aligned_cols=153  Identities=22%  Similarity=0.226  Sum_probs=102.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccC------------CCCCc-------------------ceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFD------------SKSTI-------------------GVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~------------~~~~~-------------------~~~~~~~~~~~~~   74 (203)
                      ...++|+++|.+++|||||+++|++......            ...+.                   +.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3569999999999999999999986531100            00110                   1111111112222


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC----
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA----  150 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----  150 (203)
                      ....+.+|||||++.|......++..+|++++|+|+++... .+...++..+...  ...|+++++||+|+.+..+    
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            33578999999999998888889999999999999998532 2223344433332  1236999999999975211    


Q ss_pred             CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709          151 VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA  181 (203)
Q Consensus       151 ~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  181 (203)
                      ...+++.+++...+     ++++++||++|.|+.++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            12345566677777     68999999999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=1.4e-21  Score=156.09  Aligned_cols=160  Identities=18%  Similarity=0.103  Sum_probs=109.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--------CCccC--CC-----CCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--------EFCFD--SK-----STIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ..++|+++|.+++|||||+++|++.        .+...  .+     ...+.+.......++.....+.+|||||++.|.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~   89 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   89 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence            4699999999999999999999873        11100  00     012222222333343334678999999999998


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG---  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  164 (203)
                      .....++..+|++++|+|+++... .+...++..+..   .++| +++++||+|+.+...   ...+++.+++...+   
T Consensus        90 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  165 (405)
T 2c78_A           90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  165 (405)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence            888889999999999999988543 233455554444   3677 889999999974211   11235566666655   


Q ss_pred             --CeEEEEecCCCCC------------------HHHHHHHHHHHHH
Q 048709          165 --LFFSEASALNGDN------------------VDTAFFRLLQEIY  190 (203)
Q Consensus       165 --~~~~~~sa~~~~~------------------i~~~~~~i~~~~~  190 (203)
                        ++++++||++|.|                  +.++++.+.+.+.
T Consensus       166 ~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          166 DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence              6899999999977                  6666666665543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=4.7e-21  Score=152.58  Aligned_cols=160  Identities=16%  Similarity=0.087  Sum_probs=108.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCcc------C---CC-----CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCF------D---SK-----STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV   93 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~------~---~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   93 (203)
                      .++|+++|.+++|||||+++|++.....      .   .+     ...+.+.......++.....+.+|||||++.|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            5899999999999999999998731100      0   00     01122222222333333457899999999999888


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC-----
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG-----  164 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----  164 (203)
                      ...++..+|++++|+|+++....+. ...+..+..   .++| +++++||+|+.+...   ...+++.+++...+     
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            8888999999999999998432222 223333332   3677 689999999974211   12245666777665     


Q ss_pred             CeEEEEecCCCCC----------HHHHHHHHHHHHHH
Q 048709          165 LFFSEASALNGDN----------VDTAFFRLLQEIYA  191 (203)
Q Consensus       165 ~~~~~~sa~~~~~----------i~~~~~~i~~~~~~  191 (203)
                      ++++++||++|.|          +.++++.|.+.+..
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            5899999998764          88888888776643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=1.9e-21  Score=149.24  Aligned_cols=162  Identities=15%  Similarity=0.136  Sum_probs=102.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------CCC----------------------ccee------------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------KST----------------------IGVE------------   64 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------~~~----------------------~~~~------------   64 (203)
                      ....++|+|+|.+|+|||||+|+|++..+.+..      .++                      .+.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999998874221      111                      0000            


Q ss_pred             ---------eEEEEEEEC-CEEEEEEEEeCCCch-------------hhhhhhHhhhcCCcEEE-EEEeCCCHHHHHHHH
Q 048709           65 ---------FQTRTVTIN-SKIIKAQIWDTAGQE-------------RYRAVTSAYYRGALGAV-VVYDITKRQSFDHVA  120 (203)
Q Consensus        65 ---------~~~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  120 (203)
                               .....+.+. .....+.+|||||..             .+..+...|+..++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                     000000000 002478999999953             45566777888888776 799998754433322


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH--cC-CeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED--QG-LFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      .++..+.   ..+.|+++|+||+|+.+......+.+......  .+ .+++++||++|.|++++++++.+..
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            3333332   35789999999999976433233322211011  12 3688899999999999999988754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.3e-21  Score=159.79  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=100.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-------------------------------CCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-------------------------------KSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|.+++|||||+++|++.......                               .+..+.+.....+..  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            34699999999999999999999875322111                               011222222233333  


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---HHHHHHHHHHHHhhcCCC-CcEEEEEeCCCCCcccC
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---FDHVARGVEELRAHADSS-IRIILIGNKSDLVDMWA  150 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~  150 (203)
                      ....+.||||||++.|......++..+|++|+|+|++++..   +....++...+......+ .|+++|+||+|+.+..+
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            33578999999999999888899999999999999987421   100111112222122223 45999999999976322


Q ss_pred             CC----HHHHHHHHHHc-----CCeEEEEecCCCCCHHHH
Q 048709          151 VS----AEDVVEFAEDQ-----GLFFSEASALNGDNVDTA  181 (203)
Q Consensus       151 ~~----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~  181 (203)
                      ..    .+++..++...     .++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22    23334444443     368999999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=3.2e-21  Score=155.23  Aligned_cols=150  Identities=19%  Similarity=0.224  Sum_probs=101.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCccC-----------------------------CCCCcceeeEEEEEEECCE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFD-----------------------------SKSTIGVEFQTRTVTINSK   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   75 (203)
                      ..++|+++|.+++|||||+++|+..  .+...                             ..+..+.+....  .++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~~~~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFETK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEECS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--EEecC
Confidence            4589999999999999999999864  22110                             011122222222  23333


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHH-------HHHHHHHhhcCCCC-cEEEEEeCCCCCc
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVA-------RGVEELRAHADSSI-RIILIGNKSDLVD  147 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~-p~ivv~nK~D~~~  147 (203)
                      ...+.+|||||+..|......++..+|++++|+|+++ .+|+...       ..+..+..   .+. |+++++||+|+.+
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCC
Confidence            4678999999999999888899999999999999998 5666432       22222222   233 5899999999976


Q ss_pred             cc------CCCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHHH
Q 048709          148 MW------AVSAEDVVEFAEDQG-----LFFSEASALNGDNVDTAF  182 (203)
Q Consensus       148 ~~------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~  182 (203)
                      ..      ....+++.+++...+     ++++++||++|.|+.+++
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            21      112355667777665     689999999999997543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=3.4e-21  Score=156.19  Aligned_cols=155  Identities=17%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCcc----------------------CC-------CCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCF----------------------DS-------KSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~----------------------~~-------~~~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|..++|||||+++|+.  +.+..                      ..       ....+.+.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4569999999999999999999974  22110                      00       01111222222233333


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc-
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMW-  149 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~-  149 (203)
                        ..+.||||||++.|......++..+|++|+|+|+++..   +|+...++...+......++| +++++||+|+.... 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              57899999999999888888899999999999999852   332111222222222224677 99999999996421 


Q ss_pred             -----CCCHHHHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 048709          150 -----AVSAEDVVEFAEDQ-------GLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       150 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~  182 (203)
                           ....+++.+++...       .++++++||++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223566666655       4679999999999998755

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.83  E-value=4.9e-20  Score=134.33  Aligned_cols=157  Identities=20%  Similarity=0.166  Sum_probs=100.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch----------hhhhhh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE----------RYRAVT   94 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~   94 (203)
                      .....+|+++|++|||||||+++|.+..+.....++.+.......+.+++   .+.+|||||..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998764333334545444333333333   46799999963          233333


Q ss_pred             Hhhh---cCCcEEEEEEeCCCHHHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcC--C
Q 048709           95 SAYY---RGALGAVVVYDITKRQSFDH--VARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQG--L  165 (203)
Q Consensus        95 ~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  165 (203)
                      ..++   ..++++++++|++++.+...  +..|+   ..   .+.|++++.||+|+....+  ...+.+.+++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3444   57899999999987544322  22222   11   4688999999999865321  12345555555554  5


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          166 FFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       166 ~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .++++|++++.|+++++++|.+.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             ceEEEeecCCCCHHHHHHHHHHHHh
Confidence            6889999999999999999887653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3e-19  Score=134.69  Aligned_cols=127  Identities=16%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc-----
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR-----   99 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-----   99 (203)
                      ...++|+++|.+|+|||||+|+|++..... ...+..+.......+..++.  .+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence            457999999999999999999999987532 22233344445555556664  7899999998776554444332     


Q ss_pred             ----CCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCHHH
Q 048709          100 ----GALGAVVVYDITKRQSFDHV-ARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSAED  155 (203)
Q Consensus       100 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~  155 (203)
                          .+|++++|++++... +... ..|+..+......+  .|+++|+||+|+...+....++
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~  173 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYET  173 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHH
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHH
Confidence                789999999887643 2222 35566665554433  4899999999986443444433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.82  E-value=2.4e-19  Score=142.67  Aligned_cols=161  Identities=16%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----hhhhh---HhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----YRAVT---SAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~---~~~~~~~d  102 (203)
                      .|+++|++|||||||+++|.+........+..+..+....+..++ ...+.+||+||...    +..+.   ...+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            479999999999999999998754333334444444555555543 24578999999632    11111   22356799


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      .+++++|++ ...+..+..+...+.....  ...|.++++||+|+...  ...+++.+.+...+++++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 4556666666555544332  35789999999999763  233455556666788999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 048709          181 AFFRLLQEIYALSK  194 (203)
Q Consensus       181 ~~~~i~~~~~~~~~  194 (203)
                      ++++|.+.+.....
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999876443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=4.9e-22  Score=161.16  Aligned_cols=152  Identities=17%  Similarity=0.195  Sum_probs=105.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +..+|+++|++++|||||+++|.+..+.....+..+.+.....+..++  ..+.||||||++.|..++...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            568999999999999999999987655443333333332222233333  467899999999999988888999999999


Q ss_pred             EEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc--CCCHH--HHHHHHHHc--CCeEEEEecCCCCC
Q 048709          107 VYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW--AVSAE--DVVEFAEDQ--GLFFSEASALNGDN  177 (203)
Q Consensus       107 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~sa~~~~~  177 (203)
                      |+|+++   +++.+.+    ..+..   .++|+++++||+|+.+..  .+..+  +...++..+  .++++++||++|.|
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            999987   3443332    22222   478999999999997521  11100  000011122  26899999999999


Q ss_pred             HHHHHHHHHH
Q 048709          178 VDTAFFRLLQ  187 (203)
Q Consensus       178 i~~~~~~i~~  187 (203)
                      ++++++++..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999999875

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=4.4e-20  Score=160.04  Aligned_cols=161  Identities=19%  Similarity=0.104  Sum_probs=108.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-------cc-------CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-------CF-------DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      ...++|+++|.+++|||||+++|++...       ..       ....+.+.+.....+.++.....+.||||||++.|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            3569999999999999999999986310       00       000122222222223333344678999999999998


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHHcC---
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA---VSAEDVVEFAEDQG---  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  164 (203)
                      .....++..+|++|+|+|+++.... +...++..+..   .++| +++++||+|+.+...   ...+++.+++...+   
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            8888899999999999999985322 22334444333   2677 789999999975211   12245666776665   


Q ss_pred             --CeEEEEecCCC--------CCHHHHHHHHHHHHH
Q 048709          165 --LFFSEASALNG--------DNVDTAFFRLLQEIY  190 (203)
Q Consensus       165 --~~~~~~sa~~~--------~~i~~~~~~i~~~~~  190 (203)
                        ++++++||++|        .|+.++++.|.+.+.
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence              68999999999        457888887776554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=1.9e-20  Score=151.51  Aligned_cols=150  Identities=19%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCccC-----------------------------CCCCcceeeEEEEEEECCE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFCFD-----------------------------SKSTIGVEFQTRTVTINSK   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   75 (203)
                      ..++|+++|.+++|||||+++|++.  .+...                             .....+.+.....+..  .
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~--~   83 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--P   83 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--S
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--C
Confidence            4699999999999999999999863  11100                             0011222222223333  3


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcc
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SFD---HVARGVEELRAHADSSIR-IILIGNKSDLVDM  148 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  148 (203)
                      ...+.||||||+..|......++..+|++++|+|+++..   +|+   +....+..+..   .++| +++++||+|+.+.
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence            357899999999999988888999999999999999753   221   22233232222   3555 8999999999731


Q ss_pred             cC----CCHHHHHHHHHHcC-----CeEEEEecCCCCCHHHH
Q 048709          149 WA----VSAEDVVEFAEDQG-----LFFSEASALNGDNVDTA  181 (203)
Q Consensus       149 ~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~  181 (203)
                      ..    ...+++.+++...+     ++++++||++|.|+.++
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11    12244556666555     68999999999998744

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=7.5e-19  Score=148.46  Aligned_cols=163  Identities=15%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcce--------eeEEEE---------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGV--------EFQTRT---------------------------   69 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~--------~~~~~~---------------------------   69 (203)
                      ...++|+|+|.+|+|||||+|+|++.++.+.. .+++..        ......                           
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            45799999999999999999999998765432 233210        000000                           


Q ss_pred             ------------------EEECCEE--EEEEEEeCCCchhh---hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Q 048709           70 ------------------VTINSKI--IKAQIWDTAGQERY---RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEEL  126 (203)
Q Consensus        70 ------------------~~~~~~~--~~~~l~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  126 (203)
                                        +..+...  ..+.||||||....   ......++..+|++++|+|++++.+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                              0000000  25889999996553   345567889999999999999876666654443333


Q ss_pred             HhhcCCCCcEEEEEeCCCCCcccCCCHH----------HHHHH----HH-H--------cCCeEEEEecC----------
Q 048709          127 RAHADSSIRIILIGNKSDLVDMWAVSAE----------DVVEF----AE-D--------QGLFFSEASAL----------  173 (203)
Q Consensus       127 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~sa~----------  173 (203)
                      ..   .+.|+++|+||+|+........+          .+.+.    .. .        ...+++++||+          
T Consensus       227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~  303 (695)
T 2j69_A          227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP  303 (695)
T ss_dssp             TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred             Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence            22   36789999999998654311111          12211    11 1        12469999999          


Q ss_pred             ----CCCCHHHHHHHHHHHHHH
Q 048709          174 ----NGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       174 ----~~~~i~~~~~~i~~~~~~  191 (203)
                          ++.|+++++..+.+.+..
T Consensus       304 ~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          304 QADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhhccCHHHHHHHHHHHHHH
Confidence                999999999999887755

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.79  E-value=7.5e-20  Score=143.99  Aligned_cols=157  Identities=12%  Similarity=0.131  Sum_probs=104.3

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEE--------------------------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR--------------------------------------   68 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   68 (203)
                      ...+|+|+|.+|||||||+|+|++..+.+....+.+......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345999999999999999999999876433322221111100                                      


Q ss_pred             --------------EEEE-CCEEEEEEEEeCCCchhh-------------hhhhHhhhcCCcEEEEEEeCCCHHHHHHHH
Q 048709           69 --------------TVTI-NSKIIKAQIWDTAGQERY-------------RAVTSAYYRGALGAVVVYDITKRQSFDHVA  120 (203)
Q Consensus        69 --------------~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  120 (203)
                                    .+.+ ......+.+|||||...+             ..+...|+.++|++++|++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 001125789999997665             556778999999999999875432211  2


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      .|+..+......+.|+++|+||+|+........+.+..+....+.+|+.++++.+.++++.+..+
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            34444444444678999999999998654555554554455567889999999988877655443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.79  E-value=5.1e-19  Score=134.01  Aligned_cols=125  Identities=12%  Similarity=0.076  Sum_probs=81.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhH-------hh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTS-------AY   97 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~   97 (203)
                      ...++|+++|.+|+|||||+|+|++..+.... .+..+.......+..++  ..+.+|||||...+.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            45799999999999999999999988764222 12222233333333443  5689999999765542211       12


Q ss_pred             --hcCCcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCcccCCCH
Q 048709           98 --YRGALGAVVVYDITKRQSFDHV-ARGVEELRAHADSS--IRIILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        98 --~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~  153 (203)
                        ...+|++++|+|++.. ++... ..|+..+....+.+  .|+++|+||+|+...+....
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence              3478999999988653 22222 35666665554333  69999999999875443333

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=7e-19  Score=135.98  Aligned_cols=163  Identities=15%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceee---EEEE---------------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF---QTRT---------------------------------   69 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~---~~~~---------------------------------   69 (203)
                      ....+|+|+|.+|+|||||+|+|++..+.+......+..+   ....                                 
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4568999999999999999999999876322210000000   0000                                 


Q ss_pred             ---------------------EE-ECCEEEEEEEEeCCCchh-------------hhhhhHhhhcCCcEEEEEEeCCCHH
Q 048709           70 ---------------------VT-INSKIIKAQIWDTAGQER-------------YRAVTSAYYRGALGAVVVYDITKRQ  114 (203)
Q Consensus        70 ---------------------~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~  114 (203)
                                           +. ......++.+|||||...             +......++..+|++++|+|+.+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                 00 000113689999999643             4556677899999999999974321


Q ss_pred             -HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC---C---CCCHHHHHHHHHH
Q 048709          115 -SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL---N---GDNVDTAFFRLLQ  187 (203)
Q Consensus       115 -s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~~~~~i~~  187 (203)
                       .......++..+   ...+.|+++|+||+|+........+.+.......+..++++++.   +   +.|+.++++.+.+
T Consensus       182 ~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          182 LANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             STTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence             101111222222   22578999999999997643322332221111122456666554   4   7899999999888


Q ss_pred             HHHH
Q 048709          188 EIYA  191 (203)
Q Consensus       188 ~~~~  191 (203)
                      .+..
T Consensus       259 ~~~~  262 (315)
T 1jwy_B          259 YFKN  262 (315)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            7754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=4.8e-21  Score=159.03  Aligned_cols=149  Identities=26%  Similarity=0.241  Sum_probs=81.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-------------------------------cCCCCCcceeeEEEEEEECC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-------------------------------FDSKSTIGVEFQTRTVTINS   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   74 (203)
                      ...++|+++|.+++|||||+++|+.....                               .+..+..+.+  .....+..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid--~~~~~~~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMD--VASTTFES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEE--eeEEEEEe
Confidence            45689999999999999999999642100                               0001122222  22222333


Q ss_pred             EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH---HH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709           75 KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ---SF---DHVARGVEELRAHADSSIR-IILIGNKSDLVD  147 (203)
Q Consensus        75 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  147 (203)
                      ....+.||||||+..|......++..+|++|+|+|++++.   .+   .+....+..+..   .++| +|+|+||+|+.+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence            4467899999999999888888899999999999998531   11   111122222222   3555 899999999875


Q ss_pred             ccCC----CHHHHHHHH-HHcCC-----eEEEEecCCCCCHH
Q 048709          148 MWAV----SAEDVVEFA-EDQGL-----FFSEASALNGDNVD  179 (203)
Q Consensus       148 ~~~~----~~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~  179 (203)
                      ....    ..+++..++ ...++     +++++||++|.|+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            2111    123344444 34444     79999999999997

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=1.2e-18  Score=146.67  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=80.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC------------------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS------------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      ....+|+++|+.|+|||||+++|++.......                  ....+.......+...  .+.+++|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence            35689999999999999999999843211000                  0111222233333333  467899999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      ..|......+++.+|++++|+|+++...... ..++..+..   .++|+++++||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            9998888899999999999999987533222 244444443   478999999999986

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.77  E-value=5.9e-18  Score=142.94  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=82.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CC------ccC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EF------CFD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAG   86 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   86 (203)
                      .....+|+|+|.+|+|||||+++|+..  .+      ...          .....+.......+...+  ..+++|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcC
Confidence            456799999999999999999999831  11      000          011112222223333343  6789999999


Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      +..|......++..+|++++|+|+++..+......|. .+..   .++|+++++||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence            9999888889999999999999999876665554443 3333   4789999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=2.4e-18  Score=141.10  Aligned_cols=116  Identities=16%  Similarity=0.108  Sum_probs=77.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC--------------------CCCccee--eEEEEEEECCEEEEEEEEe
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS--------------------KSTIGVE--FQTRTVTINSKIIKAQIWD   83 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~~l~D   83 (203)
                      ...++|+++|.+|+|||||+++|+...-....                    ..+.+.+  .....+...  ...+++||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--DCLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--TEEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--CeEEEEEE
Confidence            34689999999999999999999863110000                    0011111  111222333  36789999


Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      |||+..|......++..+|++|+|+|+++..... ...++..+.   ..++|+++++||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            9999998888888999999999999998753221 222222222   25789999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=1.7e-19  Score=138.46  Aligned_cols=162  Identities=15%  Similarity=0.236  Sum_probs=86.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC-CCccCCC--------CCcceeeEEEEEEECCEEEEEEEEeCCCc-------hh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN-EFCFDSK--------STIGVEFQTRTVTINSKIIKAQIWDTAGQ-------ER   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   89 (203)
                      .-.++|+|+|++|+|||||+++|++. .++....        ++............++....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34589999999999999999999876 3322211        11111111111122334467899999997       44


Q ss_pred             hhhhhH-------hhhcC-------------CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           90 YRAVTS-------AYYRG-------------ALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        90 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      +..+..       .++..             +++++++.+.+.. +++.+.  ...+... ..+.|+++|+||.|+...+
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHH
Confidence            444443       34322             2345665554321 122221  1222222 2467899999999997543


Q ss_pred             CC--CHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          150 AV--SAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++  ..+++.+++..++++++++||+++ +++++|.++.+.+...
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            32  245778888999999999999999 9999999999888653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=7.1e-19  Score=139.58  Aligned_cols=85  Identities=24%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEE---------------------EECC-EEEEEEEEeCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV---------------------TINS-KIIKAQIWDTAG   86 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~l~D~~g   86 (203)
                      ++|+++|.+|+|||||+|+|++........+..+.+......                     .+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999999887433333333333222221                     1232 357899999999


Q ss_pred             chhh----hhhhH---hhhcCCcEEEEEEeCCCH
Q 048709           87 QERY----RAVTS---AYYRGALGAVVVYDITKR  113 (203)
Q Consensus        87 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~  113 (203)
                      ....    ..+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7542    22222   357899999999999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.2e-18  Score=138.74  Aligned_cols=159  Identities=14%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCc-cCC-------CCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFC-FDS-------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------   90 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------   90 (203)
                      .-.++|+|+|++|+|||||++.|++.... ...       .++.........+...+....+.+||++|...+       
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34588999999999999999999987653 211       111111111111122333457899999996543       


Q ss_pred             hhh------------------hHhhhcCCcE--EEEEEeCCCHHHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           91 RAV------------------TSAYYRGALG--AVVVYDITKRQSFDHVA-RGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        91 ~~~------------------~~~~~~~~d~--~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      ..+                  ...++.++++  ++++.+.+. .++.... .|+..+.    .++|+|+|+||+|+...+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence            111                  1223445544  444444331 1222222 4444443    378999999999987644


Q ss_pred             CCCH--HHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          150 AVSA--EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       150 ~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ++..  +++.+.+...+++++++|++++.++.+++..+.+.+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            4443  567778888899999999999999998887776654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=8.3e-17  Score=136.14  Aligned_cols=118  Identities=16%  Similarity=0.067  Sum_probs=81.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC--CCcc------CC----------CCCcceeeEEEEEEEC-----CEEEEEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN--EFCF------DS----------KSTIGVEFQTRTVTIN-----SKIIKAQIW   82 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~--~~~~------~~----------~~~~~~~~~~~~~~~~-----~~~~~~~l~   82 (203)
                      ....+|+|+|..|+|||||+++|+..  .+..      ..          ....+.......+.++     +..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45689999999999999999999742  1110      00          0111122222223222     233789999


Q ss_pred             eCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        83 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ||||+..|......+++.+|++|+|+|+++.........| ..+..   .++|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence            9999999988888899999999999999986554443333 33322   4789999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.74  E-value=7.5e-17  Score=136.25  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc--CCCccC----C------------CCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK--NEFCFD----S------------KSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~--~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      .+..+|+|+|.+|+|||||+++|+.  +.+...    .            .+..+.......+..++  ..++||||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            4568999999999999999999984  222100    0            01111222223334443  57899999999


Q ss_pred             hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           88 ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        88 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ..|......+++.+|++++|+|+++..+......| ..+..   .++|+++++||+|+..
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH---cCCCEEEEEECCCccc
Confidence            98888888899999999999999986665555444 33333   4789999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=1.2e-18  Score=133.91  Aligned_cols=134  Identities=16%  Similarity=0.076  Sum_probs=107.7

Q ss_pred             HHHHHHhcCCCc-cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHH
Q 048709           43 QILSRFTKNEFC-FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVA  120 (203)
Q Consensus        43 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  120 (203)
                      +|+.+++.+.+. ..+.+|.+..+. ..+..++   ++.+||+  ++.++.+++.+++++|++++|+|++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            578888888887 777888884443 3322222   6889999  8889999999999999999999999987 788888


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHH
Q 048709          121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG--LFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      .|+..+..   .++|+++|+||+|+.+.+.  .+++.+++..+.  +++++|||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            89887654   4789999999999976432  245677777777  89999999999999999987653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.71  E-value=1.6e-18  Score=136.07  Aligned_cols=159  Identities=14%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE---------------------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ---------------------------------------   66 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~---------------------------------------   66 (203)
                      ....+|+|+|.+|||||||+|+|++.++.+......+..+.                                       
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34689999999999999999999998864222111000000                                       


Q ss_pred             ----------EEEEEEC-CEEEEEEEEeCCCch-------------hhhhhhHhhhcCCc-EEEEEEeCCCHHHHHHHHH
Q 048709           67 ----------TRTVTIN-SKIIKAQIWDTAGQE-------------RYRAVTSAYYRGAL-GAVVVYDITKRQSFDHVAR  121 (203)
Q Consensus        67 ----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~  121 (203)
                                ...+.+. .....+.||||||..             .+..+...|+...+ ++++|++++....-..   
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                      0001110 012468999999952             34556667776665 4555666654222111   


Q ss_pred             HHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH--HHHcC-CeEEEEecCCCCCHHHHHHHHHH
Q 048709          122 GVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF--AEDQG-LFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       122 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      +...+......+.|+++|+||+|+.+......+.+...  ....+ .+++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            11222333336789999999999976433222221110  00122 25788999999999999998876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.70  E-value=3.7e-16  Score=121.95  Aligned_cols=146  Identities=19%  Similarity=0.102  Sum_probs=91.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchhhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQERYRA   92 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~   92 (203)
                      .++|+++|.+|+|||||+|+|++........+..+..+....+.+++.               ...+.+|||||...+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999987754333343333333334444432               14689999999765431


Q ss_pred             ----h---hHhhhcCCcEEEEEEeCCCH----------HHHHHHHHHHHH------------------------------
Q 048709           93 ----V---TSAYYRGALGAVVVYDITKR----------QSFDHVARGVEE------------------------------  125 (203)
Q Consensus        93 ----~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------  125 (203)
                          +   ...+++.+|++++|+|+++.          +.++++..+..+                              
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence                2   23457999999999999851          122221110000                              


Q ss_pred             ----------HH-------------------hh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709          126 ----------LR-------------------AH-ADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus       126 ----------~~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                                +.                   .. ....+|+++++|+.|..-......+.+++++...+.+++.+||+
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                      10                   00 11348999999999864211233567788888889999999965

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=2.2e-17  Score=121.26  Aligned_cols=155  Identities=14%  Similarity=0.066  Sum_probs=95.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccC------CCCCcce--------eeEEEEEEEC----------------CEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFD------SKSTIGV--------EFQTRTVTIN----------------SKI   76 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~------~~~~~~~--------~~~~~~~~~~----------------~~~   76 (203)
                      ...+|+++|.+|||||||+++|........      ..+..+.        ......+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            357999999999999999999986421110      0111000        0011111110                012


Q ss_pred             EEEEEEeCCCchhhhhhhHhhh-cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYY-RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED  155 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  155 (203)
                      ..+.+|||+|+..    .+.++ ...+.+++|+|+.+....  ...+...      .+.|+++++||+|+.+......++
T Consensus       109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence            4678999998511    11111 256789999998765321  1111111      146789999999997543356677


Q ss_pred             HHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          156 VVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       156 ~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                      +.+.+...  .++++++||++|.|++++++++.+.+....
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            77776654  478999999999999999999998876544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.69  E-value=1.7e-17  Score=130.30  Aligned_cols=104  Identities=12%  Similarity=0.020  Sum_probs=70.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAE  154 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~  154 (203)
                      +.+.||||||...   .....+..+|++++|+|....+....+..        .-...|+++|+||+|+.+....  ..+
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5789999999432   23345689999999999876544322211        0124588999999998652111  111


Q ss_pred             HHHHHHH-------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          155 DVVEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       155 ~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ++.+...       .++.+++++||++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            2222221       125789999999999999999999988765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.67  E-value=4.7e-16  Score=128.08  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--C----------------C----ccCCCCCcceeeEEEEEEECCEEEEEEEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--E----------------F----CFDSKSTIGVEFQTRTVTINSKIIKAQIW   82 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (203)
                      ..+..+|+|+|+.++|||||..+|+..  .                +    ..+..+..++......+.+.+  ..++|+
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlI  105 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLL  105 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEE
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEE
Confidence            345689999999999999999998521  0                0    111122223333334444544  578999


Q ss_pred             eCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           83 DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        83 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ||||+..|..-....++-+|++|+|+|+...-.-+...-| ..+.+   .++|.++++||+|...
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            9999999988888889999999999999985433333333 44444   4899999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=1.8e-18  Score=127.47  Aligned_cols=154  Identities=15%  Similarity=0.097  Sum_probs=91.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeE------------EEEEEEC-CE------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQ------------TRTVTIN-SK------------------   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   75 (203)
                      ..++|+|+|.+|||||||+++|+...+.....++.+.++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999876543322222222221            1111111 10                  


Q ss_pred             -EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHH
Q 048709           76 -IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        76 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                       ...+.++|++|.-...   ..+-...+..+.++|+........  .....      ...|.++|+||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence             0134555555521100   011122344566666432111000  00011      13578999999999764345677


Q ss_pred             HHHHHHHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          155 DVVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       155 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ++.+++...  +++++++||++|.|++++|+++.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            777777654  6789999999999999999999887754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.2e-14  Score=114.07  Aligned_cols=153  Identities=16%  Similarity=0.105  Sum_probs=101.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHhhhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-------AVTSAYYR   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~   99 (203)
                      ...+|+++|.||+|||||+|+|++........+.++.++....+.+++.  +++++||||...-.       ...-..++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            3479999999999999999999998877666688888888888888874  57899999953211       11224578


Q ss_pred             CCcEEEEEEeCCCHHHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCc--------ccCCCHHHHHHHHHHcCCeEEEE
Q 048709          100 GALGAVVVYDITKRQSFD-HVARGVEELRAHADSSIRIILIGNKSDLVD--------MWAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                      .+|++++|+|++++.... .+...+...... -...|.++++||.|...        ......+++..+...+.+.--++
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            899999999999874322 222222221111 14567889999999742        12355667777766665432233


Q ss_pred             ecCCCCCHHHHH
Q 048709          171 SALNGDNVDTAF  182 (203)
Q Consensus       171 sa~~~~~i~~~~  182 (203)
                      -...+...+++.
T Consensus       228 ~~~~nv~eddl~  239 (376)
T 4a9a_A          228 AFRCDATVDDLI  239 (376)
T ss_dssp             EECSCCCHHHHH
T ss_pred             eecccCCHHHHH
Confidence            333444555444

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.63  E-value=1.4e-16  Score=124.71  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV  156 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  156 (203)
                      +.+.++||+|....   .......+|++++|+|++.+.....+..   .+     ...|.++|+||+|+.+.... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            46789999995321   2345678999999999987543322211   11     24578999999998642110 0112


Q ss_pred             HHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          157 VEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       157 ~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ..+..          .+..+++.+||++|.|+++++++|.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            22211          124578999999999999999999887643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=3.4e-16  Score=129.05  Aligned_cols=117  Identities=22%  Similarity=0.278  Sum_probs=80.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCc---cCCCCCcceeeEEEEEEEC----------------------------
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFC---FDSKSTIGVEFQTRTVTIN----------------------------   73 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~----------------------------   73 (203)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....++++. .  ..+..+                            
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-F--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-E--EEEECCSSSEEECCC------------------C
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-E--EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            446799999999999999999999998764   222232211 0  000000                            


Q ss_pred             ---CEE---------EEEEEEeCCCchh-----------hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 048709           74 ---SKI---------IKAQIWDTAGQER-----------YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA  130 (203)
Q Consensus        74 ---~~~---------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  130 (203)
                         +..         ..+.||||||...           +......++..+|++++|+|+++.........++..+..  
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--  216 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--  216 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence               000         2588999999764           456667788999999999999875333344455544432  


Q ss_pred             CCCCcEEEEEeCCCCCc
Q 048709          131 DSSIRIILIGNKSDLVD  147 (203)
Q Consensus       131 ~~~~p~ivv~nK~D~~~  147 (203)
                       .+.|+++|+||+|+..
T Consensus       217 -~~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVE  232 (550)
T ss_dssp             -CGGGEEEEEECGGGSC
T ss_pred             -cCCCEEEEEECCCccC
Confidence             4688999999999875

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.63  E-value=4.9e-15  Score=116.24  Aligned_cols=152  Identities=16%  Similarity=0.117  Sum_probs=93.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC-------------------EEEEEEEEeCCCchh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS-------------------KIIKAQIWDTAGQER   89 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~~~   89 (203)
                      ++|+++|.+|+|||||+|+|++........+..+.........+++                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999998653222223333333333333321                   235789999999765


Q ss_pred             hh-------hhhHhhhcCCcEEEEEEeCCCH----------HHHHHHHHH---H--------------------------
Q 048709           90 YR-------AVTSAYYRGALGAVVVYDITKR----------QSFDHVARG---V--------------------------  123 (203)
Q Consensus        90 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~---~--------------------------  123 (203)
                      ..       .....+++.+|++++|+|+++.          +...++..+   +                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42       1233468999999999999751          111111000   0                          


Q ss_pred             ------HH----HHh-------------------hc-CCCCcEEEEEeCCCCC--cc-cCCCHHHHHHHHHHcCCeEEEE
Q 048709          124 ------EE----LRA-------------------HA-DSSIRIILIGNKSDLV--DM-WAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       124 ------~~----~~~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                            ..    +..                   .. -..+|+++++||.|..  +. .....+.+.+++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                  00    000                   00 1237999999999842  21 1234567888888889999999


Q ss_pred             ecCCCCCHHH
Q 048709          171 SALNGDNVDT  180 (203)
Q Consensus       171 sa~~~~~i~~  180 (203)
                      ||+...++.+
T Consensus       242 SAk~E~el~e  251 (368)
T 2dby_A          242 SARLEAELAE  251 (368)
T ss_dssp             CHHHHHHHHT
T ss_pred             echhHHHHHH
Confidence            9987544443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.61  E-value=3e-15  Score=112.57  Aligned_cols=110  Identities=14%  Similarity=-0.053  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCchhhhhhhH------hhhcCCcEEEEEEeCCCH---HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           77 IKAQIWDTAGQERYRAVTS------AYYRGALGAVVVYDITKR---QSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      +.+.+|||||...+.....      ..+.. +++++++|+...   ..+.....+...  .....+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence            4789999999876543221      24456 888999987542   222222111111  11113679999999999865


Q ss_pred             ccCCCHHHHHHH----------------------------HHHc--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          148 MWAVSAEDVVEF----------------------------AEDQ--GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       148 ~~~~~~~~~~~~----------------------------~~~~--~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ..+  .+++.++                            +...  ..+++++||++|.|+++++++|.+.+..
T Consensus       186 ~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          186 EEE--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHH--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccc--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            321  1111111                            1232  2489999999999999999999887643

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.61  E-value=1.5e-15  Score=130.70  Aligned_cols=118  Identities=18%  Similarity=0.162  Sum_probs=84.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCcc----------------CCCC--CcceeeEEEEEE------------ECCE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCF----------------DSKS--TIGVEFQTRTVT------------INSK   75 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~   75 (203)
                      ....+|+|+|.+++|||||+++|+...-..                +..+  |.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998641100                0111  111111122222            1334


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      .+.++||||||+..|......+++.+|++|+|+|+++..++.....|... ..   .++|+++++||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH---cCCCeEEEEECCCcch
Confidence            67899999999999999899999999999999999997666665444332 22   4789999999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=7.3e-16  Score=120.29  Aligned_cols=104  Identities=13%  Similarity=0.036  Sum_probs=66.0

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC--HH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS--AE  154 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  154 (203)
                      +.+.||||||......   .....+|++++|+|++.......+..   ..     .+.|.++|+||+|+.+.....  .+
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5789999999654332   34689999999999976543211111   00     135789999999986521111  01


Q ss_pred             HHHHHHHHc-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          155 DVVEFAEDQ-------GLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       155 ~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ++.+.....       ..+++++||++|.|+++++++|.+.+..
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~  261 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  261 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            222222221       4578999999999999999999987753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.57  E-value=3.1e-15  Score=126.31  Aligned_cols=157  Identities=17%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceee----------------------------------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF----------------------------------------   65 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~----------------------------------------   65 (203)
                      ....+|+|+|.+++|||||+|+|++..+.+......+..+                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4568999999999999999999999876332211111000                                        


Q ss_pred             -----------EEEEEEECCEEEEEEEEeCCCchh-------------hhhhhHhhh-cCCcEEEEEEeCCCHHHHHHHH
Q 048709           66 -----------QTRTVTINSKIIKAQIWDTAGQER-------------YRAVTSAYY-RGALGAVVVYDITKRQSFDHVA  120 (203)
Q Consensus        66 -----------~~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  120 (203)
                                 ....+...+ ..++.|+||||...             ...+...|+ ..+|++++|+|++......+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                       001111111 12478999999432             233444555 5789999999998743222221


Q ss_pred             HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH----cC-CeEEEEecCCCCCHHHHHHHHHHH
Q 048709          121 RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED----QG-LFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       121 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      .++..+   ...+.|+++|+||+|+........+ +.. ...    .+ .+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---HhcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            222322   2357899999999999764333222 211 001    12 357789999999999999888863

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.52  E-value=1.3e-14  Score=113.00  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV  156 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  156 (203)
                      +.+.|+||+|.....   ......+|.+++|+|+...+..+.+...+   .     ..|.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence            578999999964322   23457899999999987543321111111   1     234577789999743211111112


Q ss_pred             HHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          157 VEFAED----------QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       157 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      .++...          +..+++.+||+++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          1457899999999999999999988764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.51  E-value=5.3e-13  Score=113.28  Aligned_cols=118  Identities=18%  Similarity=0.106  Sum_probs=78.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--------CCc----------cCCCCCcceeeEEEEEEEC-----CEEEEEEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--------EFC----------FDSKSTIGVEFQTRTVTIN-----SKIIKAQI   81 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~l   81 (203)
                      .++-.+|+|+|+.++|||||..+|+..        +..          .+..+..++......+.+.     ...+.++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            356689999999999999999998531        111          1111222222233333332     23578999


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      +||||+..|..-....++-+|++|+|+|+...-..+.. ..+..+.+   .++|.++++||+|..
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~---~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANK---YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---HTCCEEEEEECSSST
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEcccccc
Confidence            99999999988888889999999999999875333222 33333333   378999999999975

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.50  E-value=8.3e-15  Score=122.84  Aligned_cols=115  Identities=20%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCcc----CCCCC----------cceeeEEEEEEECCEEEEEEEEeCCCchhhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK--NEFCF----DSKST----------IGVEFQTRTVTINSKIIKAQIWDTAGQERYRA   92 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~--~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   92 (203)
                      .+|+|+|+.++|||||..+|+.  +.+..    ....+          -+++.......+..++..++|+||||+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999863  11110    00000          01222222223333446789999999999998


Q ss_pred             hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      -....++-+|++|+|+|+...-.-+. ...+..+..   .++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~---~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK---MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH---HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH---cCCCeEEEEecccccc
Confidence            88888999999999999987533222 233344444   3788899999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.45  E-value=1.4e-13  Score=105.58  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             chhhhhhhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHHcC
Q 048709           87 QERYRAVTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-AEDVVEFAEDQG  164 (203)
Q Consensus        87 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  164 (203)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++..+++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777788999999999999999986 88888888876654   578999999999997643222 345666777788


Q ss_pred             CeEEEEecCCCCCHHHHHHHHH
Q 048709          165 LFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       165 ~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ++++++||++|.|++++++.+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999987764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.44  E-value=3.6e-12  Score=100.63  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQER   89 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~   89 (203)
                      ....+|+++|++|+|||||+|+|++... .....|..+.++....+.+++.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4468999999999999999999999776 4555566666666666666541               13578999999432


Q ss_pred             -------hhhhhHhhhcCCcEEEEEEeCCC
Q 048709           90 -------YRAVTSAYYRGALGAVVVYDITK  112 (203)
Q Consensus        90 -------~~~~~~~~~~~~d~~i~v~d~~~  112 (203)
                             .......+++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234556789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=108.97  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQERY   90 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   90 (203)
                      ...++|+++|.+|+|||||+|+|++........++.+.++....+.+++.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34589999999999999999999998765555566666666666655442               235899999997664


Q ss_pred             hh-------hhHhhhcCCcEEEEEEeCCCH
Q 048709           91 RA-------VTSAYYRGALGAVVVYDITKR  113 (203)
Q Consensus        91 ~~-------~~~~~~~~~d~~i~v~d~~~~  113 (203)
                      .+       ....+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       345678999999999999753

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.42  E-value=1.6e-13  Score=98.21  Aligned_cols=103  Identities=9%  Similarity=0.010  Sum_probs=72.1

Q ss_pred             CCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHH---HHhhc--CCCCcEEEEEeCC-CCCcccCCCHHHHHH
Q 048709           85 AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE---LRAHA--DSSIRIILIGNKS-DLVDMWAVSAEDVVE  158 (203)
Q Consensus        85 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  158 (203)
                      +|+...+.+|+.||.++|++|||+|.+|.+.++ .+..+..   +....  -.++|++|++||. |+++  .++..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            378899999999999999999999999865433 3333322   22222  1578999999995 7765  667777766


Q ss_pred             HHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          159 FAED----QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       159 ~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ....    ..+.+..|||++|.|+.+.++|+.+.+.
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            5432    3467999999999999999999987653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=7.9e-12  Score=93.69  Aligned_cols=104  Identities=7%  Similarity=-0.010  Sum_probs=76.2

Q ss_pred             CCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHH---HHH-hhc-CCCCcEEEEEeC-CCCCcccCCCHHHHH
Q 048709           84 TAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE---ELR-AHA-DSSIRIILIGNK-SDLVDMWAVSAEDVV  157 (203)
Q Consensus        84 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~  157 (203)
                      .+|+...+.+|+.|+.++|++|||+|.+|.+.++ .+..+.   .+. ... -.+.|++|++|| .|+++  .++..++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            3578889999999999999999999999876433 222222   222 211 257899999996 58876  66777776


Q ss_pred             HHHHH----cCCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          158 EFAED----QGLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       158 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      +....    ..+.+..|||.+|+|+.+.++|+.+.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            65432    3466999999999999999999998763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.09  E-value=2.9e-11  Score=98.30  Aligned_cols=152  Identities=13%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh------cCCCccCC----CCCc-----------ceeeEEEEEE-------------
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFT------KNEFCFDS----KSTI-----------GVEFQTRTVT-------------   71 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~------~~~~~~~~----~~~~-----------~~~~~~~~~~-------------   71 (203)
                      .....|+|+|.+||||||+++.|.      +.+.....    .+..           +.........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            346789999999999999999997      44321110    0000           0111110000             


Q ss_pred             ECCEEEEEEEEeCCCchhhh-hhhHh---h--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 048709           72 INSKIIKAQIWDTAGQERYR-AVTSA---Y--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSD  144 (203)
Q Consensus        72 ~~~~~~~~~l~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  144 (203)
                      .....+.+.|+||||..... .+...   .  +..+|.+++|+|+........   ....+..    .+|+ ++|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCc
Confidence            00023568999999964321 11111   1  237899999999987533111   1122222    1464 89999999


Q ss_pred             CCcccCCCHHHHHHHHHHcCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q 048709          145 LVDMWAVSAEDVVEFAEDQGLFF------------------SEASALNGDN-VDTAFFRLLQE  188 (203)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~i~~~  188 (203)
                      .....    ..+.......+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       252 ~~~~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            86421    12333344455544                  2358888988 98888888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.07  E-value=3.3e-10  Score=90.14  Aligned_cols=140  Identities=16%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCC--CcceeeEEEEEEE--CCEEEEEEEEeCCCchhh-------h-----
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKS--TIGVEFQTRTVTI--NSKIIKAQIWDTAGQERY-------R-----   91 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~-------~-----   91 (203)
                      .++++|+|++|+|||||+|.|.+..+......  ..+.......+..  .+....+.++|++|....       .     
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            46799999999999999999998754321111  1111111112222  222236789999874211       1     


Q ss_pred             ------hhhHhhh---------cCC--c-EEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-
Q 048709           92 ------AVTSAYY---------RGA--L-GAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-  152 (203)
Q Consensus        92 ------~~~~~~~---------~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-  152 (203)
                            .....+.         .++  | +++|+.|...+-+..++    ..+... ..++|+|+|+||+|.....+.. 
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di----eilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~  196 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL----VTMKKL-DSKVNIIPIIAKADAISKSELTK  196 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH----HHHHHT-CSCSEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH----HHHHHH-hhCCCEEEEEcchhccchHHHHH
Confidence                  1111111         112  2 35566666554332222    222222 2678999999999976532210 


Q ss_pred             -HHHHHHHHHHcCCeEEEEec
Q 048709          153 -AEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       153 -~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ...+.+.+...+++++.+|.
T Consensus       197 l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          197 FKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHHcCCcEEecCC
Confidence             11222223345677777764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=1.1e-09  Score=86.10  Aligned_cols=97  Identities=19%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AE  161 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  161 (203)
                      ..+.|..+.+.+.+.++++++|+|++++.     ..|...+.+.. .+.|+++|+||+|+... ....+++.++    +.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence            45788999999999999999999999864     24444444443 37899999999999753 3344444444    55


Q ss_pred             HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 048709          162 DQGL---FFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       162 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ..++   +++.+||++|.|++++++.+.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999998886643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=2.2e-11  Score=95.85  Aligned_cols=137  Identities=17%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC------CCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh--------hh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN------EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA--------VT   94 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~   94 (203)
                      .+|+++|.+|+|||||+|+|++.      .......+.  ++.....+.++.   .+.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999986      222222222  233333444443   268999999532221        11


Q ss_pred             Hhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709           95 SAYY--RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus        95 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      ..++  +..+.++++++....--+..+.    .+......+.|+++++||.|....... ......+.+..+..+...++
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~  312 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK  312 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence            1222  6778899999984310000110    012222357899999999998753222 22333344555655555555


Q ss_pred             CCC
Q 048709          173 LNG  175 (203)
Q Consensus       173 ~~~  175 (203)
                      .+.
T Consensus       313 ~~~  315 (369)
T 3ec1_A          313 RYA  315 (369)
T ss_dssp             GGT
T ss_pred             hhh
Confidence            443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.96  E-value=6.1e-10  Score=83.95  Aligned_cols=137  Identities=19%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCC-------CCCcceeeEEEEEEEC--CEEEEEEEEeCCCchhh-------h
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDS-------KSTIGVEFQTRTVTIN--SKIIKAQIWDTAGQERY-------R   91 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~-------~   91 (203)
                      .++++++|++|+|||||+|.|++...+...       ............+...  +....+.++|++|....       .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            489999999999999999999875332111       0000000111111111  12236789999983210       0


Q ss_pred             hh---h----Hh--------------hhcCCcEEEEEEeCC-CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           92 AV---T----SA--------------YYRGALGAVVVYDIT-KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        92 ~~---~----~~--------------~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .+   .    ..              .+..+++.++++|.. .+-.-.+ ...+..+..   . +++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHH
Confidence            00   0    00              123457888888854 2211111 122233322   3 8899999999976532


Q ss_pred             CC--CHHHHHHHHHHcCCeEEE
Q 048709          150 AV--SAEDVVEFAEDQGLFFSE  169 (203)
Q Consensus       150 ~~--~~~~~~~~~~~~~~~~~~  169 (203)
                      +.  ....+.+.+...++.++.
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            11  122344445566776664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.96  E-value=3.7e-11  Score=94.53  Aligned_cols=134  Identities=13%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc-----CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhh----h----H
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF-----DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAV----T----S   95 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~----~   95 (203)
                      .+|+++|.+|+|||||+|+|++.....     ...+..+++.....+.++..   +.++||||......+    .    .
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            589999999999999999998853111     01122223333333444332   689999995432211    1    1


Q ss_pred             hh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH-HHHHHcCCeEEEEe
Q 048709           96 AY--YRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV-EFAEDQGLFFSEAS  171 (203)
Q Consensus        96 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~s  171 (203)
                      .+  ....+.++++++....--...+    ..+......+.|+++++||.|.....  ..+... .+.+..+..+...+
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~~~--~~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIHRT--KLEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEEEE--EHHHHHHHHHHHBTTTBCSSC
T ss_pred             HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccccc--cHHHHHHHHHHHhCCccCCCc
Confidence            11  2566788888887421000011    00122223578999999999987632  233333 33444554444333

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.96  E-value=1.2e-08  Score=81.09  Aligned_cols=157  Identities=16%  Similarity=0.161  Sum_probs=84.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeE-EEEEEECCEEEEEEEEeCCCchhhhhhhHhh-----hcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQ-TRTVTINSKIIKAQIWDTAGQERYRAVTSAY-----YRG  100 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~~  100 (203)
                      ...++|+|++|||||||+|.|.+...+..-. ...+.... ...+.-....-.+.+||++|..........+     +..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3589999999999999999999843221110 01111000 0011111111146889999853211111222     233


Q ss_pred             CcEEEEEEeCC--CHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC-------cccCCCHHHHHHHHH--------Hc
Q 048709          101 ALGAVVVYDIT--KRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV-------DMWAVSAEDVVEFAE--------DQ  163 (203)
Q Consensus       101 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~~~~~--------~~  163 (203)
                      .+.+++ ++..  .....    .....+..   .+.|+++|.||.|+.       .-+....+++.+...        ..
T Consensus       149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            455554 7776  32221    12222222   367999999999964       111223444333322        22


Q ss_pred             C---CeEEEEec--CCCCCHHHHHHHHHHHHHHh
Q 048709          164 G---LFFSEASA--LNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       164 ~---~~~~~~sa--~~~~~i~~~~~~i~~~~~~~  192 (203)
                      +   ..++.+|+  ..+.|++++.+.+.+.+.+-
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            2   35788999  56667999999998877553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=3.5e-09  Score=83.33  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             CchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 048709           86 GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEF----AE  161 (203)
Q Consensus        86 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  161 (203)
                      .++.|..+...++..++++++|+|++++.+     .|...+.+.. .+.|+++|+||+|+... ....+.+.++    +.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHH
Confidence            467899999999999999999999999763     3333333333 37899999999999753 3334444444    45


Q ss_pred             HcCC---eEEEEecCCCCCHHHHHHHHHHHH
Q 048709          162 DQGL---FFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       162 ~~~~---~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ..++   +++.+||++|.|++++++.+.+..
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   789999999999999998886644

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.82  E-value=1.1e-09  Score=82.27  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      ++++++|.+|+|||||+|+|.+....... ++.+.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            79999999999999999999987653322 3333333223333332   578999999654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=8.2e-09  Score=78.28  Aligned_cols=101  Identities=16%  Similarity=0.059  Sum_probs=69.5

Q ss_pred             EEeCCCch-hhhhhhHhhhcCCcEEEEEEeCCCHHHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 048709           81 IWDTAGQE-RYRAVTSAYYRGALGAVVVYDITKRQSFD--HVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVV  157 (203)
Q Consensus        81 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  157 (203)
                      +-..||+. .........+..+|+++.|+|+.++.+..  .+..++        .++|.++|+||+|+....  ..+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence            34567754 33344566789999999999999986654  233322        478999999999997621  123334


Q ss_pred             HHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          158 EFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       158 ~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      ++....+++++.+||+++.|++++++.+.+.+..
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4555567899999999999999999888877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.78  E-value=5.6e-09  Score=79.17  Aligned_cols=59  Identities=22%  Similarity=0.394  Sum_probs=36.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE   88 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   88 (203)
                      ...++|+++|.||+|||||+|+|.+....... ...+++.....+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999987643222 2222222222333332   47899999953

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.68  E-value=5.1e-08  Score=77.97  Aligned_cols=86  Identities=15%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             EEEEEEeCCCchhhh-----hhhH-hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYR-----AVTS-AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      +.+.|+||+|.....     .+.. ......|.+++|+|+.........   ...+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc---
Confidence            578899999943211     1111 113357899999999875432222   2222221   234678999999854   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEec
Q 048709          151 VSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                       ....+.......+.|+..++.
T Consensus       254 -~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 -KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             -SHHHHHHHHHTTCCCEEEEEC
T ss_pred             -cccHHHHHHHHHCCCEEEEEc
Confidence             344566677778999888775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.49  E-value=5.8e-07  Score=72.01  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCchhhhh-hhH---h--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCcc
Q 048709           77 IKAQIWDTAGQERYRA-VTS---A--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSI-R-IILIGNKSDLVDM  148 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~~  148 (203)
                      +.+.|+||||...... +..   .  .+..+|.+++|+|+.....   .......+.    ... | ..+|+||+|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence            5679999999543211 111   1  1236899999999876532   111122221    234 5 889999999753 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEE
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                         ....+..+....+.|+..+
T Consensus       253 ---~~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 ---KGGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ---TTHHHHHHHHHSSCCEEEE
T ss_pred             ---chHHHHHHHHHHCCCEEEe
Confidence               1233455667777776655

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.45  E-value=1.9e-07  Score=77.25  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=40.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCc-ceeeEEEEE--EE-CCEEEEEEEEeCCCch
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTI-GVEFQTRTV--TI-NSKIIKAQIWDTAGQE   88 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~l~D~~g~~   88 (203)
                      ....++|+|+|.||+|||||+|+|++.........++ +.+.....+  +. ......+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            3467999999999999999999999977432221111 111112221  11 1122457899999954

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.42  E-value=5.3e-07  Score=72.03  Aligned_cols=90  Identities=17%  Similarity=0.100  Sum_probs=55.1

Q ss_pred             EEEEEEeCCCchh--hh-hhh---Hh--hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709           77 IKAQIWDTAGQER--YR-AVT---SA--YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus        77 ~~~~l~D~~g~~~--~~-~~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      +.+.++||||...  .. ...   ..  .....+.+++|+|+...+......   ..+...   -.+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~~---~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQA---SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHHH---CSSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhcc---cCCcEEEEecccccc-
Confidence            5678999999533  11 111   11  122468999999998654322222   222222   234689999999753 


Q ss_pred             cCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709          149 WAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                         ....+.......+.|+..++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               345667777788999888876  5443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.39  E-value=7.5e-07  Score=67.95  Aligned_cols=91  Identities=16%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             EEEEEEeCCCchh--hhh-hhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCc
Q 048709           77 IKAQIWDTAGQER--YRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVD  147 (203)
Q Consensus        77 ~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  147 (203)
                      +.+.++||||...  ... +..     .....+|.+++|+|+.....   .......+..    ..| ..+|+||+|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            4689999999655  221 221     12447899999999875322   1122222222    345 678999999753


Q ss_pred             ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                          ....+...+...+.|+..++  .|.++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                34456677788889988776  4555543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.33  E-value=2e-07  Score=69.92  Aligned_cols=84  Identities=18%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709           93 VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      .....+.++|+++.|+|+.++.+.....  +.    ..  ++|.++|+||+|+.+..  ..+...++....++++ .+||
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~----ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~~g~~v-~iSa   82 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD----FS--RKETIILLNKVDIADEK--TTKKWVEFFKKQGKRV-ITTH   82 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC----CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHHTTCCE-EECC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH----hc--CCCcEEEEECccCCCHH--HHHHHHHHHHHcCCeE-EEEC
Confidence            3456789999999999999876543210  11    11  78999999999997631  1233445555667888 9999


Q ss_pred             CCCCCHHHHHHHHHH
Q 048709          173 LNGDNVDTAFFRLLQ  187 (203)
Q Consensus       173 ~~~~~i~~~~~~i~~  187 (203)
                      +++.|++++++.+.+
T Consensus        83 ~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           83 KGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTSCHHHHHHHHCCC
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999988876643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.29  E-value=1.8e-06  Score=72.16  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .|+|+|++|||||||++.|.+..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=4.8e-07  Score=69.19  Aligned_cols=88  Identities=17%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             hhHhhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHHcCCeEEE
Q 048709           93 VTSAYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEFAEDQGLFFSE  169 (203)
Q Consensus        93 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~  169 (203)
                      +.+..+.++|.+++|+|+.+|. +...+.+++.....   .++|.++|+||+|+.+...  ...+...++....+.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            3445689999999999999764 33334444332222   4788999999999976321  0123444555566889999


Q ss_pred             EecCCCCCHHHHHH
Q 048709          170 ASALNGDNVDTAFF  183 (203)
Q Consensus       170 ~sa~~~~~i~~~~~  183 (203)
                      +||.++.|+++++.
T Consensus       156 ~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          156 TSSKDQDSLADIIP  169 (307)
T ss_dssp             CCHHHHTTCTTTGG
T ss_pred             EecCCCCCHHHHHh
Confidence            99998888776554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.12  E-value=3e-06  Score=65.50  Aligned_cols=91  Identities=12%  Similarity=0.024  Sum_probs=52.3

Q ss_pred             EEEEEeCCCchhhhh-hhHh-----hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC
Q 048709           78 KAQIWDTAGQERYRA-VTSA-----YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV  151 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  151 (203)
                      .+.++|++|...... ....     ..-..|-.+++.|+.....   +...+..+....   -..++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            456799999533221 1111     1124677899999765432   222233333221   12378899999633    


Q ss_pred             CHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          152 SAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      ..-.+...+...+.|+..++  +|.++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            23456677788899988877  5555543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.06  E-value=3e-07  Score=74.58  Aligned_cols=101  Identities=16%  Similarity=0.122  Sum_probs=56.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--hhhh--------H
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--RAVT--------S   95 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~--------~   95 (203)
                      ..++.|+++|.+||||||+.++|...-... ..++.............+......+||..|...+  ...+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999987532111 1111110000000000111123457899887332  2222        4


Q ss_pred             hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHh
Q 048709           96 AYYRGALGAVVVYDITKRQSFDHVARGVEELRA  128 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  128 (203)
                      .++...++.++|+|.++. +.+....|+..+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            566667888999999986 44445555555544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.01  E-value=1.7e-05  Score=61.88  Aligned_cols=84  Identities=15%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             hhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHHHcCCeEEEEecCC
Q 048709           97 YYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV-SAEDVVEFAEDQGLFFSEASALN  174 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~  174 (203)
                      ...++|.+++|.+.. |. +...+.+++-....   .++|.++|+||+|+.+.... ..++........+++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468899999887654 43 33344444433322   36778999999999763210 01223344456788999999999


Q ss_pred             CCCHHHHHHH
Q 048709          175 GDNVDTAFFR  184 (203)
Q Consensus       175 ~~~i~~~~~~  184 (203)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.92  E-value=1.1e-05  Score=64.76  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+..-|+|+|++++|||||+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            35577999999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.83  E-value=5.6e-05  Score=60.55  Aligned_cols=83  Identities=13%  Similarity=0.040  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCchhhh-hhhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYR-AVTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  149 (203)
                      +.+.|+||||..... .+..     ......+.+++|+|+.......   .....+..    ..+ .-+|+||.|.... 
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~~-  255 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDAR-  255 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSSC-
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCcc-
Confidence            568999999954332 1111     1244678899999987543221   11222222    223 3478999997532 


Q ss_pred             CCCHHHHHHHHHHcCCeEEEE
Q 048709          150 AVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~  170 (203)
                       .  ..+.......+.|+..+
T Consensus       256 -~--g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 -G--GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             -C--THHHHHHHHHCCCEEEE
T ss_pred             -H--HHHHHHHHHHCCCeEEE
Confidence             1  24445566667665444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.75  E-value=1.5e-05  Score=56.07  Aligned_cols=23  Identities=22%  Similarity=0.700  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+++++|++|||||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.73  E-value=0.00013  Score=55.85  Aligned_cols=85  Identities=16%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             EEEEEEeCCCchhhhh-hh------Hhhh-----cCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           77 IKAQIWDTAGQERYRA-VT------SAYY-----RGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      ..+.++||||...... +.      ...+     ...+.+++|+|+.... ....+    ..+....  + ..-+|+||.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~~--~-i~gvVlTk~  259 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEAV--N-VTGIILTKL  259 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHHS--C-CCEEEEECG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhcC--C-CCEEEEeCC
Confidence            3578999999522111 11      1111     2478889999987432 22222    2222221  1 235678999


Q ss_pred             CCCcccCCCHHHHHHHHHHcCCeEEEEec
Q 048709          144 DLVDMWAVSAEDVVEFAEDQGLFFSEASA  172 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa  172 (203)
                      |...    ..-.+...+...+.|+..+..
T Consensus       260 D~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          260 DGTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             CCcc----chHHHHHHHHHHCCCEEEEeC
Confidence            9643    233577888888999887754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.60  E-value=3.2e-05  Score=54.40  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      --++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.57  E-value=3.6e-05  Score=55.05  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.++|+|++|||||||++.|.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.55  E-value=0.00091  Score=48.07  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCc-hhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 048709           77 IKAQIWDTAGQ-ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAED  155 (203)
Q Consensus        77 ~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  155 (203)
                      +.+.++|+|+. ...  .....+..+|.+++++..+ ..+...+...+..+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            56889999986 332  2345677899999988876 455666666666665532  4568899999986430  12345


Q ss_pred             HHHHHHHcCCeEE
Q 048709          156 VVEFAEDQGLFFS  168 (203)
Q Consensus       156 ~~~~~~~~~~~~~  168 (203)
                      +.+.+...+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            6666666665544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.55  E-value=0.00041  Score=55.36  Aligned_cols=85  Identities=15%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             EEEEEEeCCCchhhhh-hhH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRA-VTS-----AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      +.+.++||||...... ...     ...-..|.+++|+|+.....   .......+....  + ...+|+||.|...   
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l--~-i~GVIlTKlD~~~---  251 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV--G-VTGLVLTKLDGDA---  251 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT--C-CCEEEEESGGGCS---
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC--C-ceEEEEeCcCCcc---
Confidence            4688999999543211 111     11235788999999864322   112222222211  1 2467899999743   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 048709          151 VSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~s  171 (203)
                       ....+.......+.|+..+.
T Consensus       252 -~~g~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          252 -RGGAALSARHVTGKPIYFAG  271 (425)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEE
T ss_pred             -cHHHHHHHHHHHCCCEEEEe
Confidence             22345566677888877665

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.51  E-value=5e-05  Score=54.27  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.49  E-value=2.5e-05  Score=59.65  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -.++++|++|||||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=5.6e-05  Score=53.40  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.|+++|++||||||+++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46999999999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.48  E-value=5.3e-05  Score=52.84  Aligned_cols=21  Identities=38%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      =-++++|++|||||||++.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            358999999999999999754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.48  E-value=5.5e-05  Score=54.41  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =-++++|++|||||||++.|.+.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999999874

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.47  E-value=6.5e-05  Score=53.69  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.|+|+|++||||||+++.|.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.47  E-value=0.0002  Score=54.60  Aligned_cols=21  Identities=57%  Similarity=0.835  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      -.++++|++|||||||+|.|.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999998

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.44  E-value=6.7e-05  Score=54.56  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      --++|+|++|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.44  E-value=6.6e-05  Score=54.52  Aligned_cols=23  Identities=26%  Similarity=0.648  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++|+|++|||||||++.|.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.43  E-value=7.6e-05  Score=53.70  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .....|+|+|++|||||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.43  E-value=1.7e-05  Score=58.67  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999998853

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.41  E-value=7.7e-05  Score=54.84  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.37  E-value=9.4e-05  Score=52.81  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      --|+|+|++|||||||++.|.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            45899999999999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.36  E-value=9.9e-05  Score=50.83  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -.++++|+.|||||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.36  E-value=9.4e-05  Score=53.97  Aligned_cols=23  Identities=35%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.35  E-value=0.00011  Score=52.96  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      --|+|+|++||||||+++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            46899999999999999999865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.33  E-value=0.00012  Score=54.06  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998853

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.32  E-value=0.00012  Score=50.78  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.32  E-value=0.00013  Score=52.42  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+++|+.|||||||++.|.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998876

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.32  E-value=0.00015  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999999976

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.31  E-value=0.00014  Score=50.32  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 048709           29 FKVVVIGDSAVGKSQILSRF   48 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l   48 (203)
                      +-|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.31  E-value=0.00012  Score=52.93  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.31  E-value=0.00012  Score=55.05  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999998853

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.31  E-value=0.00012  Score=52.28  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ..|+|+|++||||||+++.|.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            579999999999999999997653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.30  E-value=0.00012  Score=54.65  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.30  E-value=0.00017  Score=50.22  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.30  E-value=0.00014  Score=53.57  Aligned_cols=23  Identities=35%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.28  E-value=0.00015  Score=56.51  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      .++++|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.28  E-value=0.00014  Score=54.54  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999998853

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.28  E-value=0.00013  Score=54.28  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.28  E-value=0.00015  Score=53.50  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.|.+-.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.27  E-value=0.00015  Score=51.25  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|+||+|||||||++.|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.27  E-value=0.00014  Score=51.34  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999975

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.27  E-value=0.00016  Score=53.61  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998853

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.26  E-value=0.00017  Score=53.20  Aligned_cols=22  Identities=23%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~   49 (203)
                      +..|+|+|++||||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999998

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.26  E-value=0.00016  Score=52.14  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998843

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.26  E-value=0.00017  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.25  E-value=0.00015  Score=54.19  Aligned_cols=23  Identities=48%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            57999999999999999998753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.25  E-value=0.00016  Score=51.75  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-|+|+|++||||||+++.|..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.25  E-value=0.00015  Score=55.28  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =.++|+|++|||||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            4799999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.25  E-value=0.00015  Score=53.41  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.24  E-value=0.00015  Score=54.21  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =.++|+|++|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999999876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00016  Score=53.85  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.24  E-value=0.00015  Score=51.47  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|++|||||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.24  E-value=0.00017  Score=51.95  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.23  E-value=0.00017  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.23  E-value=0.00017  Score=53.48  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|+.|||||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.22  E-value=0.00019  Score=53.62  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|+.|||||||++.|.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.22  E-value=0.00015  Score=52.35  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999876

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.22  E-value=0.0002  Score=49.54  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+|+|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.21  E-value=0.00019  Score=53.81  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|+.|||||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.20  E-value=0.0002  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.20  E-value=0.00011  Score=53.65  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=15.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh-cC
Q 048709           29 FKVVVIGDSAVGKSQILSRFT-KN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~-~~   51 (203)
                      --++|+|++||||||+++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999998 54

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.20  E-value=0.00019  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.20  E-value=0.0002  Score=53.76  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++|+|+.|||||||++.|.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.20  E-value=0.0002  Score=51.95  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.18  E-value=0.0002  Score=53.27  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.17  E-value=0.0002  Score=53.57  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.16  E-value=0.00028  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.15  E-value=0.00031  Score=50.30  Aligned_cols=23  Identities=22%  Similarity=0.069  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.15  E-value=0.0003  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.15  E-value=0.00033  Score=50.14  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....|+|+|++||||||+.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.15  E-value=0.00018  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.15  E-value=0.00029  Score=50.20  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++.|+|+|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.14  E-value=0.00026  Score=52.95  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.14  E-value=0.00026  Score=50.31  Aligned_cols=21  Identities=33%  Similarity=0.601  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.13  E-value=0.00027  Score=53.89  Aligned_cols=25  Identities=28%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      -.++++|++|||||||+|.|.+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc
Confidence            3689999999999999999987543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.13  E-value=0.00023  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.13  E-value=0.00032  Score=53.79  Aligned_cols=26  Identities=31%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....-|+|+|++|||||||++.|.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            44578999999999999999998763

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.12  E-value=0.0003  Score=49.55  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +..|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.12  E-value=0.00029  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.11  E-value=0.00027  Score=49.44  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-++++|++|||||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.11  E-value=0.00024  Score=51.56  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =-++|+|++|||||||++.+.+.
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999873

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.11  E-value=0.00027  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.11  E-value=0.00029  Score=50.19  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.10  E-value=0.0002  Score=54.72  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++|+|+.|||||||++.|.+-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHcC
Confidence            36899999999999999998774

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00032  Score=49.34  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.09  E-value=0.00032  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.08  E-value=0.00015  Score=50.59  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++|+|++|||||||++.|.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.08  E-value=0.00029  Score=50.76  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.08  E-value=0.00034  Score=51.59  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .....|+|+|+.|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998866

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.07  E-value=0.00039  Score=49.57  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...|+++|++||||||+.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.07  E-value=0.00037  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +..|+++|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998853

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.06  E-value=0.00041  Score=53.33  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...++-|+|+|++|||||||++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999998854

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.05  E-value=0.0004  Score=54.34  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=26.5

Q ss_pred             cCCCCCCCe--eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           19 KMIPDKIDY--VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        19 ~~~~~~~~~--~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...+.....  .-+++|+|++|||||||++.|.+.
T Consensus       159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            345555555  678999999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.0003  Score=54.93  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .|+|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999998763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.04  E-value=0.00038  Score=47.94  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.04  E-value=0.00031  Score=54.80  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47999999999999999998854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.04  E-value=0.00038  Score=51.56  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.04  E-value=0.0004  Score=49.33  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....|+|+|.+||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.04  E-value=0.00034  Score=53.04  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.03  E-value=0.00038  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.03  E-value=0.00043  Score=48.66  Aligned_cols=24  Identities=13%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999988654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.03  E-value=0.00042  Score=49.54  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999999865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.02  E-value=0.00036  Score=54.49  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999998854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.00  E-value=0.00037  Score=54.29  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.99  E-value=0.00055  Score=51.90  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=21.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.99  E-value=0.00045  Score=48.26  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+++|.+||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35799999999999999998863

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.99  E-value=0.0004  Score=54.59  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47999999999999999998854

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.99  E-value=0.00039  Score=54.26  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            57899999999999999998854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.98  E-value=0.00062  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+|.|.+||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998863

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.98  E-value=0.00045  Score=48.40  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.98  E-value=0.00042  Score=50.40  Aligned_cols=22  Identities=32%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~   49 (203)
                      ...|+|+|.+||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999885

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.98  E-value=0.00051  Score=51.99  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+.-|++.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.98  E-value=0.00041  Score=54.22  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57999999999999999998854

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.98  E-value=0.00029  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++++|++|+|||||++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998774

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.97  E-value=0.00049  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+|+|++||||||+++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.95  E-value=0.0005  Score=48.91  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            367999999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.94  E-value=0.00044  Score=54.25  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47999999999999999998854

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.94  E-value=0.00055  Score=52.31  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+|+|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999876

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.94  E-value=0.00046  Score=54.14  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999998753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.94  E-value=0.00051  Score=49.91  Aligned_cols=22  Identities=14%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998853

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.94  E-value=0.0004  Score=50.30  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|+|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998853

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.94  E-value=0.00042  Score=54.22  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++|+|++|||||||++.|.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.94  E-value=0.0007  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+++|.+||||||+.+.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            347799999999999999998865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.93  E-value=0.00044  Score=51.98  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999977

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.92  E-value=0.00047  Score=47.97  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.92  E-value=0.00039  Score=53.69  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++|+|++|||||||++.|.+.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.92  E-value=0.00055  Score=48.22  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.90  E-value=0.00037  Score=54.18  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            58999999999999999998854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.90  E-value=0.00079  Score=48.77  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --|+|+|+|||||+|....|..
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999988854

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.90  E-value=0.00065  Score=49.59  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=22.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34578999999999999999998774

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.90  E-value=0.00052  Score=48.46  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.89  E-value=0.00051  Score=53.94  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =.++|+|++||||||+++.|.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.89  E-value=0.00049  Score=52.50  Aligned_cols=84  Identities=13%  Similarity=0.020  Sum_probs=46.4

Q ss_pred             EEEEEeCCCchhhhh------------hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 048709           78 KAQIWDTAGQERYRA------------VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL  145 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  145 (203)
                      .+.+.||+|......            +.+......+.++++.|+.......   ..+..+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence            456889999432111            1112234567788899987653322   2222222221  1 24788999986


Q ss_pred             CcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709          146 VDMWAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                      ...    .-.+.......+.|+..+.
T Consensus       260 ~a~----gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TAK----GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred             ccc----ccHHHHHHHHHCCCeEEEe
Confidence            431    2245566667788877765

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.89  E-value=0.00071  Score=47.53  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|+|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.88  E-value=0.0006  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.88  E-value=0.00058  Score=48.32  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+++|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.88  E-value=0.0005  Score=54.81  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -|+|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.87  E-value=0.00054  Score=50.65  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.86  E-value=0.00098  Score=50.25  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~   49 (203)
                      ...+.|+|+|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999886

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.86  E-value=0.00051  Score=50.92  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...+..|+++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.86  E-value=0.00056  Score=52.15  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..--++++|+.||||||+++.|.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999998865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.84  E-value=0.00065  Score=49.06  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.83  E-value=0.0008  Score=48.52  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.83  E-value=0.00055  Score=47.94  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.83  E-value=0.0006  Score=53.83  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|++|||||||++.|.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999999874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.82  E-value=0.00059  Score=55.82  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++|+|++||||||+++.|.+.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.82  E-value=0.00076  Score=49.99  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~   49 (203)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.81  E-value=0.00073  Score=46.95  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..++++|.+|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.80  E-value=0.0008  Score=50.07  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.80  E-value=0.00095  Score=47.40  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=22.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+.+.|+++|.+||||||+.+.|..
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999999998864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.80  E-value=0.00029  Score=50.52  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.80  E-value=0.00037  Score=54.33  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.77  E-value=0.00078  Score=47.08  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.+|+|+.|||||||+++|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.77  E-value=0.00079  Score=46.51  Aligned_cols=22  Identities=9%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.77  E-value=0.0022  Score=51.42  Aligned_cols=24  Identities=29%  Similarity=0.275  Sum_probs=20.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~   49 (203)
                      ....=|+|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            355677799999999999999664

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.77  E-value=0.00057  Score=47.73  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=16.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.77  E-value=0.00095  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.76  E-value=0.00089  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+|+|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.00089  Score=46.66  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.75  E-value=0.00078  Score=49.97  Aligned_cols=21  Identities=14%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998854

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.74  E-value=0.00078  Score=48.76  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --++++|++|+|||||++.+.+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3588999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.73  E-value=0.00081  Score=50.48  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.72  E-value=0.00097  Score=48.84  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++.|++.|++||||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998853

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.71  E-value=0.00082  Score=51.93  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998763

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.0007  Score=54.66  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            47999999999999999998774

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.69  E-value=0.004  Score=41.77  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356999999999999999888653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.68  E-value=0.0011  Score=48.28  Aligned_cols=26  Identities=12%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+.++++|+|+|||||||+...|..
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccceeeECCCCCCHHHHHHHHHH
Confidence            34579999999999999999998743

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.67  E-value=0.0012  Score=45.55  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.|+|.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998843

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.66  E-value=0.00095  Score=52.10  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..--|+++|+.||||||+++.|.+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            345799999999999999998865

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.63  E-value=0.00096  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -++|+|++|+|||||++.+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.60  E-value=0.0011  Score=53.82  Aligned_cols=84  Identities=14%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCchhhhh-hhH------hhh-----cCCcEEEEEEeCCCHHH-HHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           77 IKAQIWDTAGQERYRA-VTS------AYY-----RGALGAVVVYDITKRQS-FDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~~------~~~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      +.+.++||+|...... +..      ...     ...+-+++|+|+..... ...+    ..+....  + ...+|+||.
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a----k~f~~~~--~-itgvIlTKL  448 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA----KLFHEAV--G-LTGITLTKL  448 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH----HHHHHHT--C-CSEEEEECG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH----HHHHhhc--C-CCEEEEEcC
Confidence            4578999999532111 110      111     12457888999876432 2222    2222221  1 135789999


Q ss_pred             CCCcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709          144 DLVDMWAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                      |...    ..-.+..++...+.++..+.
T Consensus       449 D~ta----kgG~~lsi~~~~~~PI~fig  472 (503)
T 2yhs_A          449 DGTA----KGGVIFSVADQFGIPIRYIG  472 (503)
T ss_dssp             GGCS----CCTHHHHHHHHHCCCEEEEE
T ss_pred             CCcc----cccHHHHHHHHHCCCEEEEe
Confidence            9632    23356777778888877654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.59  E-value=0.00083  Score=51.58  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -++|+|+.|||||||++.|.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            5789999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.59  E-value=0.0015  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|+++|.+||||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.58  E-value=0.0012  Score=51.33  Aligned_cols=24  Identities=25%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =+++++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999998853

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.58  E-value=0.0012  Score=48.85  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +-.++++|++|+|||++++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34599999999999999999875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.58  E-value=0.0014  Score=44.45  Aligned_cols=19  Identities=32%  Similarity=0.583  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 048709           31 VVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~   49 (203)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.57  E-value=0.0012  Score=47.34  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --++++|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.56  E-value=0.0014  Score=54.08  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.|.+..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.55  E-value=0.0013  Score=47.99  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      --++++|++|+|||||+..+...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999999873

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0012  Score=48.91  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.|+++|++||||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.54  E-value=0.0011  Score=46.09  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346799999999999999988653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.52  E-value=0.0016  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0029  Score=45.96  Aligned_cols=89  Identities=11%  Similarity=0.040  Sum_probs=46.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEE-eCCC-chhhh----h-hhHhhh
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW-DTAG-QERYR----A-VTSAYY   98 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~----~-~~~~~~   98 (203)
                      .+.+-|++-|+++.||++|++++++.......      ......+...+-...+-|| |.-. ...+.    + -.....
T Consensus        27 ~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~------i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR  100 (233)
T 3uc9_A           27 QNKILVLSDHPHNFLKTQFLQDLFHCSSTGIS------IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLR  100 (233)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHHHCCCCCSSC------EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHH
T ss_pred             CCceEEEecCcccccHHHHHHHHhcccccccc------cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHH
Confidence            34566666699999999999999987422111      0111222223333444444 4432 11111    0 011123


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHH
Q 048709           99 RGALGAVVVYDITKRQSFDHVA  120 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~  120 (203)
                      ...+++|+||+...++..+.+.
T Consensus       101 ~viggII~~f~~p~~~~~~~i~  122 (233)
T 3uc9_A          101 NVMAGIILITDIRQTKPQELLH  122 (233)
T ss_dssp             HTEEEEEEEECHHHHCGGGTHH
T ss_pred             HhcceEEEEEeCCCcchHHHHH
Confidence            3457899999866554443333

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.51  E-value=0.0018  Score=47.24  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...-|++.|++||||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4478999999999999999998653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.51  E-value=0.0016  Score=47.32  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.51  E-value=0.00029  Score=47.56  Aligned_cols=25  Identities=12%  Similarity=0.072  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....|++.|++|+|||++.+.+...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            3456999999999999999999764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.50  E-value=0.0013  Score=53.20  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =.++|+|+.|||||||++.|.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3579999999999999999865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.49  E-value=0.0017  Score=46.17  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.48  E-value=0.0015  Score=54.42  Aligned_cols=22  Identities=41%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.48  E-value=0.0014  Score=53.91  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =-++++|+.|||||||++.|.+..
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCC
Confidence            357999999999999999998853

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.46  E-value=0.0013  Score=47.09  Aligned_cols=22  Identities=27%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.+++.|+||+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999888765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.45  E-value=0.0015  Score=51.29  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-.++++|++|+|||||++.|.+
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999999876

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.43  E-value=0.0017  Score=54.07  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++++|+.|||||||++.+.+-
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.40  E-value=0.0017  Score=52.02  Aligned_cols=24  Identities=25%  Similarity=0.381  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =+++++|++|||||||++.|.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            478999999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0018  Score=54.11  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|+|||||++.|.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            368999999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.33  E-value=0.0025  Score=48.31  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=20.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.-+++.|+||+|||+|.+++..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346788889999999999999865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.33  E-value=0.0016  Score=54.30  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++++|++|||||||++.+.+-
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            37899999999999999998774

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.32  E-value=0.0024  Score=46.64  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.31  E-value=0.002  Score=53.02  Aligned_cols=23  Identities=13%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998854

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.30  E-value=0.0022  Score=50.16  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 048709           31 VVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~   49 (203)
                      .+|+|+.|||||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5599999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.30  E-value=0.0023  Score=53.50  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      =.++++|+.|||||||++.|.+..
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            468999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.29  E-value=0.0015  Score=50.55  Aligned_cols=20  Identities=15%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      ++++|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.29  E-value=0.0021  Score=48.52  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.+++.|++|+|||++++.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.29  E-value=0.0024  Score=52.59  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++|+|+.|||||||++.|.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.29  E-value=0.0021  Score=48.27  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --++|+|++|+|||||+..+.+
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.26  E-value=0.0014  Score=54.43  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|++|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988763

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.25  E-value=0.0024  Score=46.11  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.24  E-value=0.0028  Score=46.74  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.23  E-value=0.0024  Score=47.88  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.+++.|++|+|||++++++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.22  E-value=0.0026  Score=45.36  Aligned_cols=21  Identities=14%  Similarity=0.343  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.21  E-value=0.0025  Score=48.45  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.|++.|++|+|||+|++.+.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            35699999999999999999976

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.21  E-value=0.0042  Score=49.47  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...-|+++|.+||||||+.+.|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.21  E-value=0.0028  Score=52.93  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.|.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998854

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.19  E-value=0.0019  Score=53.77  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.19  E-value=0.0031  Score=44.80  Aligned_cols=21  Identities=38%  Similarity=0.461  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.16  E-value=0.0027  Score=48.64  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.+++.|++|+|||+|++.+.+
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34689999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.15  E-value=0.0037  Score=47.38  Aligned_cols=24  Identities=13%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999986654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.13  E-value=0.0025  Score=49.19  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999988764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.12  E-value=0.0028  Score=49.30  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .--+.|+|++|||||||++.+.+.
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.11  E-value=0.0045  Score=46.13  Aligned_cols=26  Identities=15%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .....+++.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34578999999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.0031  Score=52.66  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      ++++|+.|||||||++.|.+...
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            79999999999999999988543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.10  E-value=0.003  Score=47.99  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             EEEEEEeCCCchhhhh-hh---Hhhhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRA-VT---SAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      ..+.|+||+|...... ..   ...+.  ..+.+++|++++..  ...+..+...+.   ..+ ..-+|+||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCccc---
Confidence            4688999999654322 11   12222  35778889987653  222333222221   111 2356679999754   


Q ss_pred             CCHHHHHHHHHHcCCeEEEEe
Q 048709          151 VSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~s  171 (203)
                       ....+...+...++|+..+.
T Consensus       254 -~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 -SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             -CCHHHHHHHHTCSCCCSEEC
T ss_pred             -chhHHHHHHHHHCcCEEEEE
Confidence             23467777888888876554

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.08  E-value=0.00048  Score=50.30  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 048709           31 VVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ++|+|+.|||||||++.+.+-.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            5789999999999999987643

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.07  E-value=0.011  Score=41.80  Aligned_cols=85  Identities=14%  Similarity=0.005  Sum_probs=55.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCcccCCCHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA--DSSIRIILIGNKSDLVDMWAVSAE  154 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  154 (203)
                      +.+.++|+|+..  .......+..+|.+++++..+...  ..+...+..+....  .++.++.+|+|++|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            578899999855  233445667799999999887544  55556666665443  245678999999996431   224


Q ss_pred             HHHHHHHHcCCeEE
Q 048709          155 DVVEFAEDQGLFFS  168 (203)
Q Consensus       155 ~~~~~~~~~~~~~~  168 (203)
                      ++.+++...+.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            45566665665544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.05  E-value=0.0038  Score=44.45  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ...|+|+|++|+|||+|...|...-
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3568999999999999999997643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.04  E-value=0.0042  Score=43.52  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      ++|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.04  E-value=0.0036  Score=45.65  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --++++|++|+|||||+..+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999887754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.02  E-value=0.0042  Score=44.41  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 048709           30 KVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~   49 (203)
                      -.+|+|+.|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45788999999999999873

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.00  E-value=0.0057  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988763

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.00  E-value=0.0034  Score=48.82  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.99  E-value=0.0042  Score=54.50  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      .++++|+.|||||||++.|.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999997654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.93  E-value=0.0052  Score=44.98  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...|++.|..||||||+++.|..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.93  E-value=0.0042  Score=46.96  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.93  E-value=0.0045  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .++|.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.92  E-value=0.006  Score=46.76  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|++.|++|+|||+|++++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999999965

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.92  E-value=0.0032  Score=46.78  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +...|+|.|..||||||+++.|..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.88  E-value=0.0043  Score=47.90  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.88  E-value=0.0045  Score=44.47  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.|+++|++||||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.87  E-value=0.0029  Score=55.47  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++|+|+.|||||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998853

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.86  E-value=0.0045  Score=47.54  Aligned_cols=24  Identities=17%  Similarity=0.289  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-.|++.|++|+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0059  Score=48.83  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=22.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+--|++.|+||+|||+|.+++.+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHH
Confidence            3456899999999999999999976

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.85  E-value=0.0062  Score=46.75  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.83  E-value=0.0026  Score=48.20  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=16.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.82  E-value=0.005  Score=47.57  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4699999999999999998854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.81  E-value=0.0061  Score=47.36  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999987644

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.0065  Score=48.49  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+--|++.|+||+|||+|++++.+
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.76  E-value=0.0032  Score=57.30  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      +|++||++|||||||++.|.+
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.76  E-value=0.0041  Score=51.32  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ....|+|+|++|||||||.+.|.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHh
Confidence            3467999999999999999998764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.72  E-value=0.0024  Score=47.43  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.69  E-value=0.0058  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      =-++|+|++|+|||||+..|.
T Consensus       179 ei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHH
Confidence            468999999999999999775

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0075  Score=48.26  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+--|++.|+||+|||+|++++.+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.68  E-value=0.005  Score=47.93  Aligned_cols=25  Identities=12%  Similarity=0.190  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..-.++|.|++|+|||++++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.66  E-value=0.0058  Score=44.53  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=17.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...-|+|.|++||||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.66  E-value=0.0056  Score=50.47  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.++++|++|+|||||++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.65  E-value=0.0069  Score=46.22  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.+++.|++|+|||+|+.++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.64  E-value=0.0059  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.64  E-value=0.007  Score=46.22  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|+|+|++|||||||...|..
T Consensus         5 ~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            588999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.63  E-value=0.0087  Score=43.44  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...-|++.|.+||||||+++.|..
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.63  E-value=0.12  Score=37.44  Aligned_cols=87  Identities=15%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV  156 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  156 (203)
                      +.+.++|+|+...  ......+..+|.+++++..+ ..+...+...++.+.........+.+|+|+++...  ....+++
T Consensus       119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~~  193 (245)
T 3ea0_A          119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDEI  193 (245)
T ss_dssp             CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHHH
T ss_pred             CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHHH
Confidence            5688999987542  23445677899999998876 56677777777777655434556889999998654  3344443


Q ss_pred             HHHHHHcCCeEEEEe
Q 048709          157 VEFAEDQGLFFSEAS  171 (203)
Q Consensus       157 ~~~~~~~~~~~~~~s  171 (203)
                         ....+.+++.+-
T Consensus       194 ---~~~~~~~v~~~i  205 (245)
T 3ea0_A          194 ---EKVIGRPISKRI  205 (245)
T ss_dssp             ---HHHHTSCEEEEE
T ss_pred             ---HHHhCCCeEEEC
Confidence               334566766553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.63  E-value=0.0057  Score=50.20  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=0.0

Q ss_pred             EEEEcCCCCcHHHHHHH--Hhc
Q 048709           31 VVVIGDSAVGKSQILSR--FTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~--l~~   50 (203)
                      ++|+|++|||||||++.  +.+
T Consensus        42 ~~l~G~nGsGKSTL~~~~ll~G   63 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFLYNG   63 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.62  E-value=0.007  Score=46.79  Aligned_cols=18  Identities=33%  Similarity=0.656  Sum_probs=16.5

Q ss_pred             EEEcCCCCcHHHHHHHHh
Q 048709           32 VVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        32 ~vvG~~~sGKStli~~l~   49 (203)
                      +|+|+.|+||||++.++.
T Consensus        27 ~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            699999999999999874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.61  E-value=0.0069  Score=44.90  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ...|++.|++|+|||++.+.+...
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHh
Confidence            357999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-48
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-47
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-46
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-45
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-45
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-44
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-44
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-43
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-41
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-40
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-40
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-40
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-39
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	7e-36
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-34
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	5e-33
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-31
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-31
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-30
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-30
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-29
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	9e-29
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-28
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-27
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-26
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-26
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-25
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-25
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-24
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-24
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	9e-24
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-23
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-21
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-21
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-21
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-18
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-15
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-15
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-14
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-14
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-14
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-08
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	5e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	3e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	5e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.002
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.003

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  154 bits (390), Expect = 1e-48
 Identities = 77/166 (46%), Positives = 114/166 (68%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IGDS VGK+ +L RF+++ F     STIG++F+ RT+ ++ K IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +T+AYYRGA+G ++VYDIT  +SFD++   +  +  HA + +  +++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
            D   VS E   + A D G+ F E SA    NV+ AFF L ++I A
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (381), Expect = 6e-47
 Identities = 74/171 (43%), Positives = 117/171 (68%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IG+S VGKS +L RF+ + +  D  STIGV+F+ +TV ++ K +K QIWDTA
Sbjct: 4   DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R +TS+YYRG+ G ++VYD+T ++SF+ V   ++E+  +A S++  +L+GNK DL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
            D   V  +   EFA+   + F E SAL+  NV+ AF  + ++I     ++
Sbjct: 124 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 174

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 3e-46
 Identities = 103/173 (59%), Positives = 135/173 (78%), Gaps = 1/173 (0%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FKVV+IGDS VGKS +LSRFT+NEF  +SKSTIGVEF TR++ ++ K IKAQIWDTA
Sbjct: 2   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +TSAYYRGA+GA++VYDI K  ++++V R ++ELR HADS+I I+L+GNKSDL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYAL-SKKEL 197
             + AV  ++   FAE   L F E SAL+  NV+ AF  +L EIY + S+K++
Sbjct: 122 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 3e-45
 Identities = 82/165 (49%), Positives = 116/165 (70%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
            Y+FK ++IGD  VGKS +L +FT+ +F  D   TIGVEF TR + ++ + IK QIWDTA
Sbjct: 2   SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+RAVT +YYRGA GA++VYDIT+R +++H++  + + R   + +  IILIGNK+DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
                V+ E+  +FAE+ GL F EASA  G+NV+ AF    ++IY
Sbjct: 122 EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 5e-45
 Identities = 67/164 (40%), Positives = 105/164 (64%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK+V+IG++ VGK+ ++ RFT+  F     +TIGV+F  +TV IN + +K QIWDTA
Sbjct: 3   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R++T +YYR A   ++ YDIT  +SF  +   + E+  +A + +  +L+GNK DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +   VS +   EF+E Q +++ E SA   DNV+  F  L   +
Sbjct: 123 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (363), Expect = 1e-44
 Identities = 72/163 (44%), Positives = 113/163 (69%), Gaps = 1/163 (0%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K+++IGDS VGKS +L RF +++F     +TIG++F+ +TV IN K +K QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           ER+R +T+AYYRGA+G ++VYDIT  ++F ++ +  + +  HA+   +++L+GNKSD+  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              V+A+     A++ G+ F E+SA N DNV+  FF L + I 
Sbjct: 122 RV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-44
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 1/169 (0%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTINSKIIKAQI 81
           D  D  FKV+++GDS VGK+ +L RF    F   +  ST+G++F+ + + ++   +K Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN 141
           WDTAGQER+R+VT AYYR A   +++YD+T + SFD++   + E+  +A   + ++L+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 142 KSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
           K D      V  ED  + A++ GL F E SA  G NVD AF  + +E+ 
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (353), Expect = 4e-43
 Identities = 71/165 (43%), Positives = 110/165 (66%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           DY+FK+++IG+S+VGK+  L R+  + F     ST+G++F+ +T+  N K IK QIWDTA
Sbjct: 3   DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQERYR +T+AYYRGA+G +++YDIT  +SF+ V     +++ ++  + +++L+GNK D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            D   VS+E   + A+  G  F EASA +  NV   F RL+  I 
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 3e-41
 Identities = 74/165 (44%), Positives = 110/165 (66%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D++FK +VIG++  GKS +L +F + +F  DS  TIGVEF ++ + +  K +K QIWDTA
Sbjct: 3   DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQER+R+VT +YYRGA GA++VYDIT R++++ +   + + R  A  +I IIL GNK DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
                V+  +   FA++  L F E SAL G+NV+ AF +  ++I 
Sbjct: 123 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 82/164 (50%), Positives = 110/164 (67%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y+FK ++IGD+ VGKS +L +FT   F      TIGVEF  R V I+ K IK QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QE +R++T +YYRGA GA++VYDIT+R++F+H+   +E+ R H+ S++ I+LIGNKSDL 
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 121

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               V  E+   FA + GL F E SA    NV+ AF    +EIY
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 3e-40
 Identities = 59/168 (35%), Positives = 99/168 (58%)

Query: 23  DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIW 82
           + +    K+++IG+S VGKS +L RFT + F  +  +TIGV+F+ +T++++    K  IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 83  DTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNK 142
           DTAGQER+R +T +YYRGA G ++VYD+T+R +F  +   + EL  +   +  + ++   
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 121

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               +   V   + ++FA    + F EASA   D V  AF  L+++I 
Sbjct: 122 KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 169

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 4e-40
 Identities = 61/161 (37%), Positives = 101/161 (62%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V +G+ +VGK+ +++RF  + F    ++TIG++F ++T+ +  + I+ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+R++  +Y R +  AVVVYDIT   SF    + ++++R    S + I+L+GNK+DL D 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             VS E+    A++  + F E SA  G NV   F R+   +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 67/184 (36%), Positives = 112/184 (60%), Gaps = 11/184 (5%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK---------- 75
           DY+ K++ +GDS VGK+  L R+T N+F     +T+G++F+ + V  N++          
Sbjct: 3   DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 62

Query: 76  IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-I 134
            +  Q+WDTAGQER+R++T+A++R A+G ++++D+T +QSF +V   + +L+A+A     
Sbjct: 63  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 122

Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSK 194
            I+LIGNK+DL D   V+     E A+  G+ + E SA  G NV+ A   LL  I    +
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 195 KELE 198
           + +E
Sbjct: 183 QCVE 186

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 7e-36
 Identities = 60/164 (36%), Positives = 91/164 (55%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y FKVV++G+  VGK+ ++ R+ +N+F     +T+G  F T+ + I  K +   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
           QER+ A+   YYR + GA++VYDIT   SF  V   V+ELR    + I + ++GNK DL 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 121

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               VS ++   +AE  G      SA     ++  F  L + + 
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 4e-35
 Identities = 71/162 (43%), Positives = 102/162 (62%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++G+SAVGKS ++ RF K +F    +STIG  F T+TV ++   +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           RY ++   YYRGA  A+VVYDIT  +SF      V+EL+  A  +I I L GNK+DL + 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            AV  ++   +A+D  L F E SA    NV+  F  + +++ 
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-34
 Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +KVVV+G   VGKS +  +F    F      TI  +F  + + ++S     +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELR-AHADSSIRIILIGNKSDLVD 147
           ++ ++   Y +   G ++VY +  +QSF  +    +++        + +IL+GNK DL  
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              VS+ +    AE+ G  F E SA +   VD  F  +++++ 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 5e-33
 Identities = 56/171 (32%), Positives = 97/171 (56%), Gaps = 6/171 (3%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
             +FKV+++GD  VGKS +++R+  N+F      TIGVEF  + + ++   +  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGN 141
           GQER+R++ + +YRG+   ++ + +   QSF +++   +E   +AD     S   +++GN
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 142 KSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYA 191
           K D+ +   VS E+   +  D G   + E SA +  NV  AF   ++ + A
Sbjct: 124 KIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++G   VGKS +  +F  +EF  D + T    ++ +   ++ + ++  I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV-VLDGEEVQIDILDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNKSDLVD 147
            Y A+   Y+R   G + V+ IT+ +SF   A   E+ LR   D ++  +L+GNKSDL D
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
              VS E+    A+   + + E SA    NVD  FF L++EI A
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (279), Expect = 5e-32
 Identities = 66/163 (40%), Positives = 96/163 (58%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV ++GD+ VGKS I+ RF ++ F  +   TIG  F T+TV   +++ K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           R+RA+   YYRG+  A++VYDITK ++F  +   V ELR H   SI + + GNK DL D+
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYA 191
             V   D  ++A+     F E SA N  N++  F  + + I +
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 4e-31
 Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 2/171 (1%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
               K+VV+G   VGKS +  +F ++ F  D       +  T+  +++    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTA 62

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGV-EELRAHADSSIRIILIGNKSD 144
           GQE + A+   Y R   G ++V+ I  RQSF+ V +   + LR        ++L+GNK+D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
           L     V   +   F     + + EASA    NVD AF +L++ +    ++
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (270), Expect = 9e-31
 Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 3/163 (1%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+V++G++AVGKS I+ RF  N+F  + + TIG  F T+ VTIN   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL---V 146
           + ++   YYR A  A+VVYD+TK QSF      V+EL   A   I I L+GNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               V+ E+  + AE++GL F E SA  G+NV+  F  + ++I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 1e-30
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +  +N F  +   TI   ++ + V    +     I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
            Y A+   Y R   G + V+ I   +SF+ + +  E+++   D   + ++L+GNK D + 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LA 121

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              V +    + A   G+ + E SA     V+ AF+ L++EI 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-30
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 3/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+G   VGKS +  +F +  F      TI  +   + V ++ +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE-ELRAHADSSIRIILIGNKSDLVD 147
           ++ A+   Y +   G  +VY IT + +F+ +    E  LR      + +IL+GNK DL D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 148 MWAVSAEDVVEFA-EDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              V  E     A +     F E+SA +  NV+  F+ L+++I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 2e-29
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 14/181 (7%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N+F  +   T+  +    TV I  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD- 147
            Y  +    Y      +V + +    SF++V         H       +L+G + DL D 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 148 -----------MWAVSAEDVVEFAE-DQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
                         ++ E   + A   + + + E SAL    +   F   +       + 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 196 E 196
           +
Sbjct: 183 K 183

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-29
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 14/177 (7%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
             + K VV+GD AVGK+ +L  +  + F  +   T+  +    +VT+  K     ++DTA
Sbjct: 7   ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTA 65

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDL 145
           GQE Y  +    Y      ++ + +    SF +V             ++  +LIG + DL
Sbjct: 66  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 125

Query: 146 VD------------MWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEI 189
            D               +  E   + A++ G   + E SAL    + T F   +  I
Sbjct: 126 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 9e-29
 Identities = 63/163 (38%), Positives = 94/163 (57%), Gaps = 5/163 (3%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           +FK++VIGDS VGK+ +  RF    F   +++TIGV+F+ R V I+ + IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 88  ERY-RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS-IRIILIGNKSDL 145
           ER+ +++   YYR     V VYD+T   SF  +   +EE + H  ++ I  IL+GNK DL
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASAL---NGDNVDTAFFRL 185
                V  +   +FA+   +   E SA    + D+V+  F  L
Sbjct: 122 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 5/174 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++GDS VGK+ +++++   +F    K+TIG +F T+ V ++ +++  QIWDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS----SIRIILIGNKSD 144
           R++++  A+YRGA   V+V+D+T   +F  +    +E    A      +   +++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 145 LVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
           L +    +            + + E SA    NV+ AF  + +      + E+E
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-QETEVE 175

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-27
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 2/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +++VV+G   VGKS +  +F ++ F  D   TI  +  T+   I+ +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVAR-GVEELRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++V+ +T R SF+ + +   + LR        +ILIGNK+DL  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
              V+ E+  + A    + + EASA    NVD AF  L++ I 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 1e-26
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 14/174 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K VV+GD AVGK+ +L  +T N F  +   T+  +  +  V ++ K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
            Y  +    Y     +++ + +    SF++V         H   +  IIL+G K DL D 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 149 WAVSAEDVV------------EFAEDQG-LFFSEASALNGDNVDTAFFRLLQEI 189
                +                 A++ G + + E SAL    + T F   ++ +
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.9 bits (242), Expect = 1e-26
 Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+G+ AVGKS ++ R+ K  F  D K TIGV+F  R + +N + ++  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
           + A+T AYYRGA   V+V+  T R+SF+ ++   E++ A     I   L+ NK DL+D  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 150 AVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
            +  E+    A+   L F   S     NV   F  L ++  
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 2e-26
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           +++++G  A GK+ IL +    E       T          T+  K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILI----GNKSDL 145
            R +   Y++   G + V D   R+  +     +  + A  +    ++L+     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           ++   ++ +  +     +  +     A +GD +      L  ++
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 5e-26
 Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 3/163 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           ++V V G   VGKS ++ RF K  F      T+   ++         I   QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDK-SICTLQITDTTGSH 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLV 146
           ++ A+           ++VY IT RQS + +    E++        SI I+L+GNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               V + +    A      F E SA    NV   F  LL   
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 1e-25
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G  A GK+ IL +    +       T          T+  K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDL-- 145
           + R +   YY G  G + V D   R   D   + +  +    +     I++  NK DL  
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 146 -VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +    +  +  +    D+  +   + A +GD +      L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.5 bits (236), Expect = 1e-25
 Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           +K+VV+GD  VGKS +  +F +  F  D   TI  +   +   I+++     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE-ELRAHADSSIRIILIGNKSDLVD 147
            + A+   Y R   G ++VY +T + SF+HV R  +  LR     S  +IL+ NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEIY 190
           +  V+ +   E A    + + E SA +   NVD  F  L++ I 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.5 bits (236), Expect = 1e-25
 Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 7/170 (4%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTV-TINSKIIKAQIWDTAG 86
           + KV+++GDS VGK+ ++ R+  +++    K+TIG +F T+ V     K+   Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSS----IRIILIGNK 142
           QER++++  A+YRGA   V+VYD+T   SF+++    +E   HA+ +       +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 143 SDLVDMWAVSAEDVVEFAEDQ--GLFFSEASALNGDNVDTAFFRLLQEIY 190
            D  +   + +E   +        +     SA N  NVDTAF  + +   
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.2 bits (230), Expect = 1e-24
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 15/178 (8%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K+VV+GDS  GK+ +L  F K+ F  +   T+  E  T +  I+++ I+  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD-- 147
           Y  V    Y  +   ++ +DI++ ++ D V +  +        + +++L+G KSDL    
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 148 ----------MWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDTAFFRLLQEIYALSK 194
                        VS +     A+  G   + E SAL  +N     F +      ++K
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA-CVNK 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 3e-24
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 14/174 (8%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+V++GD A GK+ +L   +K++F      T+  E     + ++ K ++  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD- 147
            Y  +    Y      ++ + I    S +++         H   ++ IIL+GNK DL + 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 148 -----------MWAVSAEDVVEFAEDQGLF-FSEASALNGDNVDTAFFRLLQEI 189
                         V  E+  + A   G F + E SA   D V   F    +  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (223), Expect = 9e-24
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+ ++G  +VGKS +  +F + +F      TI     T+ +T+N +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVD 147
            Y      Y     G ++VY +T  +SF+ +     +L        I I+L+GNK DL  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
              +S E+    AE     F E+SA         F R++ E 
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 90.4 bits (223), Expect = 1e-23
 Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 12/173 (6%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E    +K TIG        T++ K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV----ETLSYKNLKLNVWDLGGQT 72

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
             R     YY      + V D T +      ++ +  +    +     +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 148 MWAVS---AEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKEL 197
             + S    E  +   +D+      +SA+ G+ +      L+  I    +++L
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI---KEEQL 182

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (221), Expect = 2e-23
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
           FK+V++GD   GK+  + R    EF     +T+GVE        N   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
           ++  +   YY  A  A++++D+T R ++ +V     +L    + +I I+L GNK D+ D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE 198
                   + F   + L + + SA +  N +  F  L +++  +    LE
Sbjct: 123 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL--IGDPNLE 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 5e-23
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+ + G + VGKS ++ RF    F ++   T+         TI+ +++  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL-ESTYRHQATIDDEVVSMEILDTAGQE 61

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVE-ELRAHADSSIRIILIGNKSDLVD 147
                   + R   G V+VYDIT R SF+ V              ++ +IL+GNK+DL  
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRLLQEIY 190
              VS E+  + A +    F E SA  G+ N+   F+ L +E+ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 1e-21
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KV+++G    GK+ IL +F+ NE              +    I     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADS-SIRIILIGNKSDL-- 145
             R+  + YY      +VV D T R+        + ++ AH D     +++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 146 -VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            + +  +S    +   +D         AL G+ +      ++  +
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 85.1 bits (209), Expect = 1e-21
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL +F   +       TI         T+  +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLVD 147
             R+    Y+    G + V D   RQ      R     L     +   +++  NK DL  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 148 MWAVS---AEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             + +       ++            SA+ G+++      LL +I
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.8 bits (208), Expect = 1e-21
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 3/164 (1%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           V+KV+++G   VGKS +   F   E     ++        R++ ++ +     ++D   Q
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVE--DGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 58

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-VEELRAHADSSIRIILIGNKSDLV 146
           +  R +           V+VY +T + SF+  +   V+  RA     + IIL+GNKSDLV
Sbjct: 59  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 118

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
               VS ++    A      F E SA    NV   F  ++++I 
Sbjct: 119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (207), Expect = 2e-21
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 5/174 (2%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDT 84
           +  ++VV+IG+  VGKS + + F       DS    +G +   RT+ ++ +     + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 85  A-GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-LRAHADSSIRIILIGNK 142
              +     +     +     ++VY IT R SF+  +    +  RA     I IIL+GNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 143 SDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
           SDLV    VS  +    A      F E SA    NV   F  +++++    +++
Sbjct: 121 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV--RLRRD 172

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 82.7 bits (203), Expect = 1e-20
 Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D   +++++G    GK+ +L +    +    + +           ++ S+  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNIKSVQSQGFKLNVWDIG 68

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSD 144
           GQ + R    +Y+      + V D   R+ F+   + + EL      S + +++  NK D
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 145 LVD---MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
           L+       ++    +    D+       SAL G+ V      + + +
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 7/171 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            ++ V+GD+  GKS ++ RF      +        E   + + ++ +     I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGS--YQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
             +          +    + D    Q+   +   +  LR      + + L+G +  +   
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 149 W--AVSAEDVVEFAEDQ-GLFFSEASALNGDNVDTAFFRLLQEIYALSKKE 196
               V          D     + E  A  G NVD  F  + Q++  L K++
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
           K++ +G    GK+ +L     +       +T+   +   +  +    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW 149
            R +   Y+    G V + D    + FD     ++ L   A+      +I   + +    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI-LGNKIDAPN 115

Query: 150 AVSAEDVVE------------FAEDQGLFFSEASALNGDNVDTAFFRLLQ 187
           AVS  ++                  + +     S +  +    AF  L Q
Sbjct: 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            ++ ++G    GK+  ++     +F  D   T+G   +     I    +  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KITKGNVTIKLWDIGGQP 58

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVD 147
           R+R++   Y RG    V + D   ++  +     +  L        I ++++GNK DL  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 148 ---MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
                 +  +  +   +D+ +     S    DN+D     L+Q  
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-16
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            +++++G    GK+ IL R    E       T          T+  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVD 147
             R     YY      + V D   R         +  +          +++  NK D+  
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 148 MWAVSA---EDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
               S       +   +D+     + SA  G  +D A   L++ +
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 43/191 (22%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K++++G    GKS  + +            T G+         + + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 89  RYRAVTSAYYRGALGAVVVYDIT-----------KRQSFDHVARGVEELRAHADSSIRII 137
             R      +      + +  ++           + +  +  A     +      +  +I
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 138 LIGNKSDLVDMWAVSAEDVVEFAEDQG--------------------------LFFSEAS 171
           L  NK DL++   + +  V  F E  G                          ++     
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 172 ALNGDNVDTAF 182
           A + +N+   F
Sbjct: 177 ATDTENIRFVF 187

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 26/186 (13%), Positives = 51/186 (27%), Gaps = 24/186 (12%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
               +++++G    GKS I+ +            T G+             +   ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF----ETKFQVDKVNFHMFDVG 55

Query: 86  GQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-----------LRAHADSSI 134
           GQ   R      +      + V   +                                +I
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 135 RIILIGNKSDLVDMWAVSAEDVV-----EFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            +IL  NK DL+    ++ +  +     EFA       +         V  A + +  E 
Sbjct: 116 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEF 175

Query: 190 YALSKK 195
             +S  
Sbjct: 176 LRISTA 181

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 2e-14
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER 89
            V+ +G    GK+ +  R    ++  D++++I        V  N       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 90  YRAVTSAYYRGALGAVVVYDITKRQSFDHVAR----GVEELRAHADSSIRIILIGNKSDL 145
              +   +   A   V V D    Q            V        +S  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 146 VDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT 180
               A SA+ + +  E +        +     +D+
Sbjct: 121 AM--AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.5 bits (161), Expect = 3e-14
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 45/193 (23%)

Query: 28  VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ 87
           + K++++G    GKS  L +            T G+           K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQ 54

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEE-----------LRAHADSSIRI 136
              R      +      + +   ++        R               +     S++ I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 137 ILIGNKSDLVDMWAVSAEDVVEFAEDQG---------------------------LFFSE 169
           IL  NK+DL++           F E +G                           L+   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 170 ASALNGDNVDTAF 182
            +A+N +N+   F
Sbjct: 175 TTAINTENIRLVF 187

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 65.5 bits (158), Expect = 4e-14
 Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 21/177 (11%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K+V +G    GK+ +L     +                 +  +    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDLGGHI 68

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGV-EELRAHADSSIRIILIGNKSDLVD 147
           + R V   Y     G V + D    +        +   +     +++ I+++GNK D  +
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 148 MWAVS---------------AEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
             +                     ++    + L     S L        F  + Q I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.4 bits (153), Expect = 3e-13
 Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 46/191 (24%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            K++++G    GKS I+ +           +  G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV----ETHFTFKDLHFKMFDVGGQR 53

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARG-----------VEELRAHADSSIRII 137
             R      + G    +    ++                               +   II
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 138 LIGNKSDLVDMWAVSAEDVVEFAEDQG--------------------------LFFSEAS 171
           L  NK DL +     +   + + E  G                          ++     
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTC 173

Query: 172 ALNGDNVDTAF 182
           A +  NV   F
Sbjct: 174 ATDTKNVQFVF 184

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 27/181 (14%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y   +++ G    GK+ +L+  T +      + T+  +        +   +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 87  QERYRAVTSAYYRGALGA-----VVVYDITKRQSFDHVARGVEELRAH----ADSSIRII 137
             + R   S Y +           +V      +     A  + ++ +      ++ I I+
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 138 LIGNKSDLVDMWAVSAEDVVEFAEDQ----------GLFFSEASALNGDNVDTAFFRLLQ 187
           +  NKS+L    A     + +  E +           L   E      D  +     L  
Sbjct: 116 IACNKSELFT--ARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQS 173

Query: 188 E 188
            
Sbjct: 174 T 174

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 28/161 (17%), Positives = 43/161 (26%), Gaps = 5/161 (3%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE 88
            KVV+ G    GKS +L+     E    +    G         I+   +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 89  RYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM 148
                            +          D       +        I  +       +V  
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 149 WAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEI 189
            A    + +  +E  G      SA  G+ VD     L   +
Sbjct: 121 KADITGETLGMSEVNGHALIRLSARTGEGVD----VLRNHL 157

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 13/172 (7%)

Query: 31  VVVIGDSAVGKSQILSRFTK------NEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDT 84
           V ++G    GKS +L+  T+                +GV   +         I   I   
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 85  AGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKS 143
           +  +        +       + V D              E          R  ++  NK 
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYALSKK 195
           DL++  AV  + + +    +GL     SAL G  +      L + ++AL + 
Sbjct: 124 DLLEEEAV--KALADALAREGLAVLPVSALTGAGLP----ALKEALHALVRS 169

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 8/141 (5%)

Query: 29  FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQI--WDTAG 86
             V V G++  GKS  ++         +  +  GV   T             +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 87  QERYRAVTSAYYR--GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSD 144
                     Y              I+  +   +     + +            +  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS---MMKKEFYFVRTKVD 173

Query: 145 LVDMWAVSAEDVVEFAEDQGL 165
             D+   +  +   F +++ L
Sbjct: 174 -SDITNEADGEPQTFDKEKVL 193

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 33/181 (18%), Positives = 54/181 (29%), Gaps = 15/181 (8%)

Query: 24  KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWD 83
           +I    KV ++G   VGKS + +     E    S    G         +     K    D
Sbjct: 4   EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 84  TAGQERYRAVTS--------AYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR 135
           TAG  R   V               ++    V  I    +     +              
Sbjct: 63  TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122

Query: 136 IILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA-----SALNGDNVDTAFFRLLQEIY 190
            +++ NK DLV       ++  +   ++  F   +     SA  G N+D      +   Y
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID-RMIDAMNLAY 181

Query: 191 A 191
           A
Sbjct: 182 A 182

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 9/163 (5%)

Query: 30  KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG--Q 87
           ++V++G   VGKS +L+R    +    +    G      +  I  + I  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 88  ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD 147
           E    V        L  +   DI             E+ +       +  L+      V 
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVV 120

Query: 148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQEIY 190
                 E   +   D+ +     SAL G+ ++    +L + IY
Sbjct: 121 EKINEEEIKNKLGTDRHMVK--ISALKGEGLE----KLEESIY 157

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 5e-04
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 16/175 (9%)

Query: 26  DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTA 85
           D   +V   G S  GKS  L+  T  +    +  T G         +        +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 86  GQ-------ERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIIL 138
                     +++     Y         +  +   +         + +    DS+I +++
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDSNIAVLV 132

Query: 139 IGNKSDLVDMWAVSA--EDVVEFAEDQGLFFS--EASALNGDNVDTAFFRLLQEI 189
           +  K+D +   A  A    V E              S+L    VD    +L Q++
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD----KLRQKL 183

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 24/182 (13%)

Query: 31  VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTR---------TVTINSKIIKAQI 81
           ++  G S VGKS ++ R T  +     +  +  +                    +   + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 82  WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAH-------ADSSI 134
                ++          +    AV+V D               E+           +  I
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 135 RIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA----SALNGDNVDTAFFRLLQEIY 190
             I+  NK D +         + E  E       +     SA  GDN++    RL   I+
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIE----RLKNRIF 178

Query: 191 AL 192
            +
Sbjct: 179 EV 180

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 19/175 (10%)

Query: 27  YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAG 86
           Y   V ++G   VGKS +L+     +    S        +     +     +    DT G
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPG 62

Query: 87  QERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV 146
             +       +    +   +          D     +       D  +   L      + 
Sbjct: 63  LHKPMDALGEFMDQEVYEALADVNAVVWVVD-----LRHPPTPEDELVARALKPLVGKVP 117

Query: 147 DMWAVSAEDVVEFAEDQGLFFSEA---------SALNGDNVDTAFFRLLQEIYAL 192
            +   +  D  ++ E+    + E          SAL+   V      L  ++ AL
Sbjct: 118 ILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA----ELKADLLAL 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.89
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.77
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.77
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.65
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.63
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.61
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.51
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.49
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.47
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.41
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.21
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.15
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.88
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.66
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.52
d1okkd2	207	GTPase domain of the signal recognition particle r	98.48
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.46
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.46
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.44
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.43
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.11
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.1
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.86
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.82
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.79
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.73
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.69
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.65
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.64
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.6
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.56
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.53
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.51
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.49
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.44
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.43
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.41
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.4
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.39
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.39
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.36
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.35
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.35
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.35
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.34
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.31
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.28
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.27
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.26
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.25
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.25
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.24
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.23
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.23
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.22
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.21
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.2
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.19
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.18
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.18
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.16
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.16
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.14
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.13
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.13
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.12
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.09
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.08
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.07
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.06
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.01
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.0
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.0
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.99
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.94
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.88
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.86
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.81
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.78
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.78
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.73
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.72
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.7
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.58
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.58
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.56
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.54
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.51
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.5
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.5
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.49
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.49
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.42
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.41
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.39
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.36
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.34
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.32
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.2
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.07
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.06
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.04
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.91
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.76
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.76
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.73
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.72
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.71
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.69
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.68
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.61
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.58
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.53
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.46
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.44
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.43
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.33
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.33
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.18
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.1
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.05
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.04
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.04
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.02
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.01
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.01
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.84
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.82
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.76
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.52
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.51
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.42
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.2
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.15
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.92
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.68
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.23
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.17
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.87
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.67
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.21
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.04
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.52
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.21
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.2
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.13
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.57
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.23
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.83
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.49
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.86
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.51
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.45
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.38
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.38
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.37
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.08
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.83
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.59
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	83.08
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.54
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	81.96
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.56
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.58

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-37  Score=220.13  Aligned_cols=168  Identities=40%  Similarity=0.679  Sum_probs=157.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      +..+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++..+++.+|||||++.+..+++.+++++++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           3 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            56799999999999999999999999998888889989999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|+|++++.++..+..|+..+.+......|+++|+||+|+.+..++..+++.+++...++++++|||++|.||+++|.+|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999999999888777889999999999998877888999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048709          186 LQEIYALS  193 (203)
Q Consensus       186 ~~~~~~~~  193 (203)
                      ++.+....
T Consensus       163 ~~~l~~~~  170 (171)
T d2ew1a1         163 ACRLISEA  170 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            98887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-37  Score=218.91  Aligned_cols=167  Identities=43%  Similarity=0.710  Sum_probs=156.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999998888888998899988998999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|||+++++++..+..|+..+........|+++++||+|+.+.+.+..+++.+++...++++++|||++|.||+++|++
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  161 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  161 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999999988887777788999999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 048709          185 LLQEIYA  191 (203)
Q Consensus       185 i~~~~~~  191 (203)
                      |++.+.+
T Consensus       162 l~~~i~e  168 (169)
T d3raba_         162 LVDVICE  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-37  Score=217.54  Aligned_cols=162  Identities=37%  Similarity=0.581  Sum_probs=152.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++|.++.+...+.+|.+.+........++..+.+.+||++|+..+..+...+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999998888889998888888899999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||++++.+++.+..|+..+.+.. .++|+++|+||+|+.+.+++..+++.++++.+++++++|||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999887655 57899999999999888889999999999999999999999999999999999999


Q ss_pred             HHH
Q 048709          188 EIY  190 (203)
Q Consensus       188 ~~~  190 (203)
                      .+.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-37  Score=217.13  Aligned_cols=169  Identities=30%  Similarity=0.452  Sum_probs=152.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+|+|.+|||||||+++|.++.+...+.++. .+.....+.+++..+.+.+||++|.+.+...+..+++++|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            3467999999999999999999999999888776664 555667788899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      ++|||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+....+++..++...++++++|||++|.||+++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            999999999999999999998876543 7899999999999988778889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 048709          184 RLLQEIYALSK  194 (203)
Q Consensus       184 ~i~~~~~~~~~  194 (203)
                      .+++.+.+.++
T Consensus       162 ~l~~~i~k~~~  172 (173)
T d2fn4a1         162 QLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            99999876554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=214.23  Aligned_cols=164  Identities=49%  Similarity=0.829  Sum_probs=155.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ++.+||+|+|.+|+|||||+++|.++++...+.++.+.+.......+++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            46799999999999999999999999999888888889999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||+++.+++..+..|+..+.+......|+++++||+|+........+++.++++..++++++|||++|.||+++|++|
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988887899999999999998877888899999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          186 LQEI  189 (203)
Q Consensus       186 ~~~~  189 (203)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-37  Score=215.81  Aligned_cols=163  Identities=26%  Similarity=0.299  Sum_probs=134.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|.+|||||||++++.+......  .+.+.......+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc--CCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998776443  33334455667788999999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      |++++.+++.+..|+..+..... ..+|+++|+||+|+...++++.+++.+++..+++++++|||++|.||+++|+.|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999998877654 67899999999999888888999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 048709          188 EIYALS  193 (203)
Q Consensus       188 ~~~~~~  193 (203)
                      .+...+
T Consensus       160 ~i~~~~  165 (168)
T d2gjsa1         160 QIRLRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876544

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=217.73  Aligned_cols=165  Identities=36%  Similarity=0.622  Sum_probs=148.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||++++.++.+...+.++.+..........++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            56899999999999999999999999999998999989998898899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||++++++|+.+..|+..+........|+++++||+|+...++++.+++.+++..+++++++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999888777667889999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          187 QEIYA  191 (203)
Q Consensus       187 ~~~~~  191 (203)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=213.17  Aligned_cols=162  Identities=38%  Similarity=0.660  Sum_probs=152.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+|+|.+|||||||+++|.++++...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999888888888888888888899999999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQE  188 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~~  188 (203)
                      |++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++.+++++++|||++|.||+++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999888777899999999999998877889999999999999999999999999999999999987


Q ss_pred             HH
Q 048709          189 IY  190 (203)
Q Consensus       189 ~~  190 (203)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            64

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=213.49  Aligned_cols=170  Identities=44%  Similarity=0.725  Sum_probs=158.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .++.+||+|+|.+|||||||+++|..+++...+.++.+.......+..++..+.+.+||+||++.+..+++.++.+++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            46789999999999999999999999999888888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      ++|+|.++++++..+..|+..+......++|+++++||+|+....+...+++.+++...++++++|||++|.|++++|.+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~  161 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  161 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHH
Confidence            99999999999999999999988887789999999999999887788889999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 048709          185 LLQEIYALSK  194 (203)
Q Consensus       185 i~~~~~~~~~  194 (203)
                      +++.+.+..+
T Consensus       162 l~~~i~~~~~  171 (174)
T d2bmea1         162 CARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999876543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=211.46  Aligned_cols=163  Identities=40%  Similarity=0.667  Sum_probs=154.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+|+|.+|||||||+++|..+++...+.++.+..........++....+.+||++|++.+..+...+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999988999888888888889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||++++++++.+..|+..+........|+++|+||+|+.+.+.+..+++.+++...+++|++|||++|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999888888888999999999999988788999999999999999999999999999999999999


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=212.87  Aligned_cols=169  Identities=60%  Similarity=0.952  Sum_probs=154.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ++.+||+|+|.+|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|++.|...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            56799999999999999999999999998888888888888888899999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      +|||.++++++..+..|+..+.....+++|+++|+||+|+.+.+....+....+....+.++++|||++|.|++++|+++
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999999988888889999999999998877778888888999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 048709          186 LQEIYALSK  194 (203)
Q Consensus       186 ~~~~~~~~~  194 (203)
                      ++.+.....
T Consensus       162 ~~~i~~~~~  170 (175)
T d2f9la1         162 LTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999876443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.1e-36  Score=212.76  Aligned_cols=163  Identities=34%  Similarity=0.527  Sum_probs=146.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||+++++.+++...+.+|.+..+ ...+.+++..+.+.+||++|++.+..+...+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            358999999999999999999999998888878876654 4567789999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++++++.+..|+..+.+... .++|+++|+||+|+.+.+++..+++.+++...++++++|||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999998877654 789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          186 LQEIY  190 (203)
Q Consensus       186 ~~~~~  190 (203)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=212.76  Aligned_cols=168  Identities=49%  Similarity=0.779  Sum_probs=152.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||++++.+.++...+.++.+...........+..+.+.+||++|+..+..+++.++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |||++++.+++.+..|+..+.+....++|+++|+||+|+...+....++...++...++++++|||++|.||+++|.+++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778999999999999988778899999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 048709          187 QEIYALSK  194 (203)
Q Consensus       187 ~~~~~~~~  194 (203)
                      +.+.+..+
T Consensus       162 ~~i~~~~~  169 (173)
T d2a5ja1         162 KEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-36  Score=211.72  Aligned_cols=163  Identities=33%  Similarity=0.483  Sum_probs=148.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|.+.+..+...+++++|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            5999999999999999999999999888887776544 456677899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRL  185 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~i  185 (203)
                      ||++++++|+.+..|+..+.+... .++|+++++||+|+...+++..+++.+++..+++++++|||+++. ||+++|..|
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            999999999999999999877654 689999999999999888899999999999999999999999886 999999999


Q ss_pred             HHHHHH
Q 048709          186 LQEIYA  191 (203)
Q Consensus       186 ~~~~~~  191 (203)
                      ++.+.+
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=212.62  Aligned_cols=163  Identities=29%  Similarity=0.388  Sum_probs=149.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+|+|.+|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||++|...+..+...++..+|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            468999999999999999999999998888878877664 4667889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||++++++++.+..|+..+.+... .++|+++|+||+|+...+.++.+++.+++..+++++++|||++|.||+++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999988877654 789999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          186 LQEIY  190 (203)
Q Consensus       186 ~~~~~  190 (203)
                      +..+.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-36  Score=210.76  Aligned_cols=166  Identities=32%  Similarity=0.476  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+|+|.+|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|...+......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            358999999999999999999999998888777765 5566777889999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRL  185 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i  185 (203)
                      |||.+++++++.+..|+..+.+... ...|+++|+||+|+...+.+..+++.++++..++++++|||++|.||+++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999987766554 679999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 048709          186 LQEIYALS  193 (203)
Q Consensus       186 ~~~~~~~~  193 (203)
                      ++.+.+.+
T Consensus       163 ~~~i~k~~  170 (171)
T d2erya1         163 VRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99886443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-36  Score=214.26  Aligned_cols=169  Identities=46%  Similarity=0.755  Sum_probs=128.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      -++.+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            35679999999999999999999999988888878888888999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|||++++.++..+..|+..+......+.|+++|+||.|.........+++.+++...++++++|||++|.||+++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988887788999999999999887788888899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 048709          185 LLQEIYALS  193 (203)
Q Consensus       185 i~~~~~~~~  193 (203)
                      |++.+....
T Consensus       163 l~~~i~~k~  171 (173)
T d2fu5c1         163 LARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999886543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=209.40  Aligned_cols=163  Identities=44%  Similarity=0.702  Sum_probs=153.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+|+|.+|||||||+++|..+++...+.++.+...........+..+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            35899999999999999999999999988888999998888888899999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      |+|.++.++++.+..|+..+.+...++.|+++|+||+|+...+.++.+++.+++...++++++|||++|.||+++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999998887778999999999999998888999999999999999999999999999999999998


Q ss_pred             HHH
Q 048709          187 QEI  189 (203)
Q Consensus       187 ~~~  189 (203)
                      +.+
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=212.32  Aligned_cols=162  Identities=28%  Similarity=0.369  Sum_probs=145.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||+++|+++.+...+.+|.+..+ ......++..+.+.+||++|++.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999998888878876544 4456788999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD--SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |||++++++++.+..|+..+.....  .++|+++|+||+|+...+++..+++.++++.+++++++|||++|.||+++|+.
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999888765433  77999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHH
Q 048709          185 LLQEI  189 (203)
Q Consensus       185 i~~~~  189 (203)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            88643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=211.81  Aligned_cols=168  Identities=44%  Similarity=0.740  Sum_probs=157.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..+||+|+|.+|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..++++++++
T Consensus         3 ~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~   82 (194)
T d2bcgy1           3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   82 (194)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            45679999999999999999999999998888889988888888899999999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |+|||+++++++..+..|+..+.+......|+++|+||+|+.+...+..++...++...++++++|||++|.||+++|+.
T Consensus        83 i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          83 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999999988888777789999999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      +++.+.+.
T Consensus       163 l~~~i~~~  170 (194)
T d2bcgy1         163 MARQIKES  170 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=212.86  Aligned_cols=166  Identities=25%  Similarity=0.352  Sum_probs=145.8

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      +....+||+|+|.+|||||||+++|+.+.+...+.+|.+ +.....+..++..+.+.+||++|++.+..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            445679999999999999999999999998888877775 4556667778888999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcC-CeEEEE
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQG-LFFSEA  170 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  170 (203)
                      +++|||++++++|+.+..|+....+....++|+++|+||+|+.+            .+.+..+++.++++.++ ++|++|
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999887666666655567899999999999864            35678899999999887 789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 048709          171 SALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       171 sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ||++|.||+++|+.+++.++
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=214.46  Aligned_cols=171  Identities=39%  Similarity=0.643  Sum_probs=151.5

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECC----------EEEEEEEEeCCCchhhhhhh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINS----------KIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~   94 (203)
                      .++.+||+|+|.+|||||||+++|+++++...+.++.+.++....+.+++          ..+.+.+|||+|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            35679999999999999999999999998888777777777666665533          34689999999999999999


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ..+++++|++++|||++++.+++.+..|+..+..... ...|+++|+||.|+.+.+++..+++.+++..+++++++|||+
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak  161 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  161 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence            9999999999999999999999999999887665544 678899999999999888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhcc
Q 048709          174 NGDNVDTAFFRLLQEIYALSKK  195 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~~~~  195 (203)
                      +|.||+++|++|++.+.+..++
T Consensus       162 ~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         162 TGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998875544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=208.67  Aligned_cols=162  Identities=29%  Similarity=0.472  Sum_probs=148.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++++++.+...+.++.+ +.......+++..+.+.+||++|++.+......+++++|++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            58999999999999999999999998888767665 45666778899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      ||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++...++++++|||++|.||+++|+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            999999999999999988876554 7899999999999988778899999999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8775

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=207.19  Aligned_cols=163  Identities=44%  Similarity=0.704  Sum_probs=151.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+|+|.+|||||||++++.++++...+.++.+.++....+..++..+.+.+||++|++.+..+...++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46999999999999999999999999998888999988888899999999999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc---ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD---MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      |||.+++.+++.+..|+...........|+++++||+|+.+   .+.+..+++.++++..++++++|||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888777778899999999999854   367888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 048709          184 RLLQEI  189 (203)
Q Consensus       184 ~i~~~~  189 (203)
                      .|++.+
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=206.57  Aligned_cols=163  Identities=32%  Similarity=0.487  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+|+|.+|||||||+++++++.+...+.+|.+..+. .....++..+.+.+||++|+..+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            489999999999999999999999998888888876654 444578899999999999988764 456789999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCC-CHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGD-NVDTAFFRL  185 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~~~~~i  185 (203)
                      ||+++++++..+..|+........ .+.|+++|+||+|+...++++.+++.+++..++++|++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999999888766555444 689999999999998877899999999999999999999999998 599999999


Q ss_pred             HHHHHHh
Q 048709          186 LQEIYAL  192 (203)
Q Consensus       186 ~~~~~~~  192 (203)
                      ++.+...
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=205.11  Aligned_cols=166  Identities=40%  Similarity=0.664  Sum_probs=143.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccC-CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFD-SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALG  103 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~  103 (203)
                      .+..+||+|+|.+|||||||++++.++++... ..++.+.+.....+..++..+.+.+|||||++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            46789999999999999999999999887544 44556778888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Q 048709          104 AVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFF  183 (203)
Q Consensus       104 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~  183 (203)
                      +++|||+++++++..+..|+..+........|+++++||.|......+..+++..++...++++++|||++|.||+++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~  162 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  162 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999888887778899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 048709          184 RLLQEIY  190 (203)
Q Consensus       184 ~i~~~~~  190 (203)
                      +|++.+.
T Consensus       163 ~l~~~i~  169 (170)
T d2g6ba1         163 AIAKELK  169 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=214.56  Aligned_cols=163  Identities=29%  Similarity=0.491  Sum_probs=142.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+|+|.+|||||||+++|+++.+...+.+|.+.++....+..++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999998888888988888888888899999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||++++++++.+..|+..+.+.. .++|+++|+||+|+....  ..++...++...++++++|||++|.||+++|++|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~--~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSC--CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhh--hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998877655 689999999999997743  334566788889999999999999999999999999


Q ss_pred             HHHHhh
Q 048709          188 EIYALS  193 (203)
Q Consensus       188 ~~~~~~  193 (203)
                      .+....
T Consensus       160 ~l~~~~  165 (170)
T d1i2ma_         160 KLIGDP  165 (170)
T ss_dssp             HHHTCT
T ss_pred             HHccCC
Confidence            987543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-35  Score=206.36  Aligned_cols=162  Identities=26%  Similarity=0.346  Sum_probs=143.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      ..||+|+|.+|||||||++++..+.+...+.+|.+ .........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999998888877765 45556677889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEecCC
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEASALN  174 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~  174 (203)
                      ||++++++|+.+..|+........+++|+++|+||+|+.+.            +.+..++..+++...+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877766666656678999999999999642            4578889999999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQEIY  190 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~  190 (203)
                      |.||+++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=206.00  Aligned_cols=163  Identities=30%  Similarity=0.472  Sum_probs=146.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      +.+||+|+|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|+..+...++.+++++|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999999888877776544 4556778888999999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      |||++++++++.+..|+..+.+... +++|+++|+||+|+........++...++.. .++++++|||++|.||+++|++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999998877544 7899999999999998888889999999887 4789999999999999999999


Q ss_pred             HHHHHH
Q 048709          185 LLQEIY  190 (203)
Q Consensus       185 i~~~~~  190 (203)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-35  Score=205.28  Aligned_cols=163  Identities=44%  Similarity=0.766  Sum_probs=146.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|+|||||+++|+++++...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLLQ  187 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  187 (203)
                      ||.+++.+++.+..|+...........|++++++|.|+.. +....+++.+++..+++++++|||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999998888888888899999999999865 467788999999999999999999999999999999998


Q ss_pred             HHHH
Q 048709          188 EIYA  191 (203)
Q Consensus       188 ~~~~  191 (203)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=202.90  Aligned_cols=161  Identities=31%  Similarity=0.535  Sum_probs=145.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+|+|.+|||||||+++|+++.+...+.++.+..+.. .+..++..+.+.+||++|.+.+......++..++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            5899999999999999999999999888887787765544 456788889999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFRLL  186 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  186 (203)
                      +|++++.+++.+..|+..+.+... .++|+++|+||+|+.. +.+..+++.+++..+++++++|||++|.||+++|.+|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999999999999887665 6799999999999865 46778999999999999999999999999999999999


Q ss_pred             HHHH
Q 048709          187 QEIY  190 (203)
Q Consensus       187 ~~~~  190 (203)
                      +.+.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=204.40  Aligned_cols=166  Identities=39%  Similarity=0.669  Sum_probs=153.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ..++||+|+|.+|+|||||+++|.++++...+.++.+.......+.+++..+.+.+|||||++.+..+++.++.++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999998888888888888888899999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTAFFR  184 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~  184 (203)
                      +|||++++.+++.+..|+..+.+... ...|+++++||.|... +.+..+++.++++.+++++++|||++|.||+++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877654 6789999999999765 478889999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 048709          185 LLQEIYAL  192 (203)
Q Consensus       185 i~~~~~~~  192 (203)
                      +++.+.+.
T Consensus       164 l~~~l~~~  171 (177)
T d1x3sa1         164 LVEKIIQT  171 (177)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHccC
Confidence            99988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=202.56  Aligned_cols=164  Identities=26%  Similarity=0.337  Sum_probs=141.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCC---chhhhhhhHhhhcCCc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAG---QERYRAVTSAYYRGAL  102 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~d  102 (203)
                      ..+||+++|.+|+|||||+++|.+..... ...++.+.+.....+.+++..+.+.+||+++   ++.+  +...+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            46899999999999999999999876543 3446677778888888999999999999875   4443  5667899999


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Q 048709          103 GAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       103 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ++++|||++++.+++.+..|+..+..... +++|+++|+||+|+...++++.+++.+++..+++++++|||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            99999999999999999999988876544 78999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 048709          182 FFRLLQEIYAL  192 (203)
Q Consensus       182 ~~~i~~~~~~~  192 (203)
                      |+.|++.+...
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999987543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-34  Score=204.98  Aligned_cols=166  Identities=26%  Similarity=0.348  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++|..+.+...+.+|.+ .........++..+.+.+||++|++.|..++..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            58999999999999999999999999888878776 44556666788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcC-CeEEEEecCC
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQG-LFFSEASALN  174 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  174 (203)
                      ||+++++||+.+..|+.........+.|+++|+||+|+.+            .+.+..+++.+++...+ +++++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            9999999999998766666666668899999999999863            23588899999998864 7899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhc
Q 048709          175 GDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       175 ~~~i~~~~~~i~~~~~~~~~  194 (203)
                      |.||+++|+.++..+.+..+
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCS
T ss_pred             CcCHHHHHHHHHHHHhcCcC
Confidence            99999999999988766433

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=198.18  Aligned_cols=158  Identities=41%  Similarity=0.665  Sum_probs=144.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-hhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-VTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~  106 (203)
                      .+||+|+|.+|||||||+++|.++++...+.++.+.........+.+....+.+||++|...+.. .++.+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999988888888888888888999999999999999777654 56789999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCC---CCCHHHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALN---GDNVDTAF  182 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~~  182 (203)
                      |||++++++++.+..|+..+.+... .++|+++|+||+|+.+.++++.+++.++++.+++++++|||++   +.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            9999999999999999998877654 7899999999999988888999999999999999999999997   56999999


Q ss_pred             HHH
Q 048709          183 FRL  185 (203)
Q Consensus       183 ~~i  185 (203)
                      ++|
T Consensus       162 ~~l  164 (165)
T d1z06a1         162 MTL  164 (165)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=202.26  Aligned_cols=165  Identities=27%  Similarity=0.392  Sum_probs=143.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      .+..+||+|+|.+|||||||+++|+.+.+...+.+|.+ +.....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999998888877775 44556677899999999999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHHcC-CeEEEEe
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM------------WAVSAEDVVEFAEDQG-LFFSEAS  171 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  171 (203)
                      ++|||++++++|+.+..|+....+....++|+++|+||+|+..+            ......+...++..++ ++|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999977555555555578999999999998542            3456778888888877 7899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 048709          172 ALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       172 a~~~~~i~~~~~~i~~~~~  190 (203)
                      |++|.||+++|..+++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-33  Score=196.31  Aligned_cols=165  Identities=34%  Similarity=0.626  Sum_probs=145.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+|+|.+|||||||++++..+.+...+.++.+..........++..+.+.+||++|...+......++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45689999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNVDT  180 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~  180 (203)
                      +++|.+++.+++.+..|+..+.....    .+.|+++|+||+|+.+ +++..+++.++++..+ +++++|||++|.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999887765432    5689999999999965 5788999999998764 8999999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      +|+++++.++.
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=200.07  Aligned_cols=166  Identities=36%  Similarity=0.625  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      -+||+++|.+|||||||+++|+++++...+.++.+.......... +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999988887777776666655544 3455678999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCccc-CCCHHHHHHHHHHcC-CeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMW-AVSAEDVVEFAEDQG-LFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~  180 (203)
                      |||++++.+++.+..|+..+.....    .++|+++++||+|+.+.+ .+..+++.+++...+ +++++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999988765432    578999999999997653 467888999998886 7899999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 048709          181 AFFRLLQEIYALS  193 (203)
Q Consensus       181 ~~~~i~~~~~~~~  193 (203)
                      +|++|++.+.+..
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-33  Score=199.01  Aligned_cols=166  Identities=31%  Similarity=0.584  Sum_probs=147.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+|+|.+|||||||+++|+++++...+.+|.+.+.........+..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999999988889999999888888889999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD----SSIRIILIGNKSDLVDMWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~  182 (203)
                      +|.++..++..+..|+..+.....    .++|+++|+||+|+.+. ++..++..+++.. .++++++|||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc-chhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999987766532    46899999999998764 6777777777654 57899999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 048709          183 FRLLQEIYALSK  194 (203)
Q Consensus       183 ~~i~~~~~~~~~  194 (203)
                      +++++.+.+.+.
T Consensus       161 ~~l~~~i~~~~~  172 (184)
T d1vg8a_         161 QTIARNALKQET  172 (184)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc
Confidence            999998877544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-33  Score=197.23  Aligned_cols=163  Identities=27%  Similarity=0.394  Sum_probs=142.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||++++..+.+...+.++.+ .........++..+.+.+||++|++.+....+.+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888877764 44555667788999999999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHHcC-CeEEEEecCC
Q 048709          108 YDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVD------------MWAVSAEDVVEFAEDQG-LFFSEASALN  174 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~  174 (203)
                      ||+++++||+.+..|+.........+.|+++|+||+|+..            .+.+..++...+++..+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998777666666667899999999999853            34588899999999887 5899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 048709          175 GD-NVDTAFFRLLQEIYA  191 (203)
Q Consensus       175 ~~-~i~~~~~~i~~~~~~  191 (203)
                      |. +++++|+.++..++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-31  Score=187.31  Aligned_cols=161  Identities=21%  Similarity=0.317  Sum_probs=134.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++++++.+.... ++. .......+.+++..+.+.+|||+|+..+     .|++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~-~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTE-SEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSS-CEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Ccc-ceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            599999999999999999999999886543 444 3444667788999999999999997754     378899999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCc--ccCCCHHHHHHHHHH-cCCeEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHA---DSSIRIILIGNKSDLVD--MWAVSAEDVVEFAED-QGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~  181 (203)
                      ||+++++||+.+..|+..+....   ....|+++|+||.|+..  .+.+..+++.+++.. ++++|++|||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999998888775543   36689999999888743  456778888888755 5689999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 048709          182 FFRLLQEIYALSKK  195 (203)
Q Consensus       182 ~~~i~~~~~~~~~~  195 (203)
                      |..+++.+...++.
T Consensus       158 F~~l~~~i~~~~~~  171 (175)
T d2bmja1         158 FQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.98  E-value=1.6e-31  Score=186.91  Aligned_cols=155  Identities=23%  Similarity=0.456  Sum_probs=128.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|++|||||||+++|.++++...+.+|.+...  ..+..++  +.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999999999999998887777766544  3444544  6789999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~  181 (203)
                      ||+++.++++....++..+..... ++.|+++|+||.|+.+  .....++.+..     ...+++++++||++|.|++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG--ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccch--hhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            999999999999888887766544 7899999999999976  33444444332     234568999999999999999


Q ss_pred             HHHHHHH
Q 048709          182 FFRLLQE  188 (203)
Q Consensus       182 ~~~i~~~  188 (203)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.2e-31  Score=189.49  Aligned_cols=161  Identities=22%  Similarity=0.427  Sum_probs=127.9

Q ss_pred             CCCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcC
Q 048709           21 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRG  100 (203)
Q Consensus        21 ~~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~  100 (203)
                      ...+.+..+||+++|.+|||||||+++|.++++.... ++.+  +....+...+  +.+.+||++|++.+...+..++..
T Consensus         9 ~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~   83 (176)
T d1fzqa_           9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFEN   83 (176)
T ss_dssp             CSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTT
T ss_pred             hhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhc
Confidence            3344556799999999999999999999998875443 3333  3344444544  678999999999999999999999


Q ss_pred             CcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCC
Q 048709          101 ALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALN  174 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~  174 (203)
                      +|++++|||+++..++..+..++..+..... .++|+++++||+|+.+  ......+.+..     ....+++++|||++
T Consensus        84 ~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~t  161 (176)
T d1fzqa_          84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT--AAPASEIAEGLNLHTIRDRVWQIQSCSALT  161 (176)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccc--cccHHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            9999999999999999999888777665544 6799999999999976  33444443332     23356799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 048709          175 GDNVDTAFFRLLQE  188 (203)
Q Consensus       175 ~~~i~~~~~~i~~~  188 (203)
                      |.|++++|+||++.
T Consensus       162 g~gv~e~~~~l~~~  175 (176)
T d1fzqa_         162 GEGVQDGMNWVCKN  175 (176)
T ss_dssp             CTTHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=2.2e-31  Score=186.25  Aligned_cols=157  Identities=24%  Similarity=0.418  Sum_probs=125.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||+++|.+..+. ...+|.+.  ....+..++  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEee--eeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999987764 33355543  334444544  6789999999999999999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----HcCCeEEEEecCCCCCHHHH
Q 048709          108 YDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAE-----DQGLFFSEASALNGDNVDTA  181 (203)
Q Consensus       108 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~  181 (203)
                      +|+++..++.....++..+.... ..++|+++|+||+|+.+  ....++......     ...+++++|||++|.|+.++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  154 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG--ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  154 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccc--ccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHH
Confidence            99999999988877776655433 37899999999999976  344445444322     23467999999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          182 FFRLLQEIYA  191 (203)
Q Consensus       182 ~~~i~~~~~~  191 (203)
                      |++|++.+..
T Consensus       155 ~~~l~~~i~~  164 (165)
T d1ksha_         155 IDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=189.99  Aligned_cols=161  Identities=22%  Similarity=0.393  Sum_probs=125.8

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGA  104 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~  104 (203)
                      ....+||+++|.+|||||||+++|.+..+.... +|.+...  ......+  +.+.+||+||++.+...+..++..+|++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            445799999999999999999999988765443 5554433  3333444  6789999999999999999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Q 048709          105 VVVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNV  178 (203)
Q Consensus       105 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i  178 (203)
                      ++|+|++++.++.....|+........ .+.|+++++||+|+.+  ....+++.+..     ...++++++|||++|.|+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv  166 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGI  166 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCH
Confidence            999999999999998888877655444 6799999999999976  44555555432     334567999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 048709          179 DTAFFRLLQEIYAL  192 (203)
Q Consensus       179 ~~~~~~i~~~~~~~  192 (203)
                      +++|++|++.+.+.
T Consensus       167 ~e~~~~l~~~i~~~  180 (182)
T d1moza_         167 TEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999988654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=182.32  Aligned_cols=156  Identities=24%  Similarity=0.436  Sum_probs=123.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|||||||+++|.++...... +|.+..  .......  .+.+.+||+||...+...+..+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~--~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFN--VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEE--EEEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeee--EEEeecc--ceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            4699999999999999999999987764433 343332  2333333  3678999999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |+|+++.+++..+..|+....... ....|+++++||+|+.+  .....++....     ...++.+++|||++|.||++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccc--cccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            999999999999988887765543 37899999999999976  34444454432     22356799999999999999


Q ss_pred             HHHHHHHHH
Q 048709          181 AFFRLLQEI  189 (203)
Q Consensus       181 ~~~~i~~~~  189 (203)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=173.22  Aligned_cols=154  Identities=20%  Similarity=0.385  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVY  108 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~  108 (203)
                      +||+++|++|||||||+++|.++++.........     .....+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6999999999999999999998887655433322     12223345578999999999999999999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHHHH
Q 048709          109 DITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       109 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~~~  182 (203)
                      |..++.++..+..|+..+..... ...|+++++||.|+.+  .....++..     ++...++++++|||++|.||+++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN--AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccc--cccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999999888877766554 6789999999999876  334444433     233456789999999999999999


Q ss_pred             HHHHHHH
Q 048709          183 FRLLQEI  189 (203)
Q Consensus       183 ~~i~~~~  189 (203)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.95  E-value=1.4e-26  Score=163.20  Aligned_cols=157  Identities=25%  Similarity=0.469  Sum_probs=119.0

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAV  105 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i  105 (203)
                      ...+||+|+|.+|||||||+++|.+.++.... ++.+..  .......+  ..+.+||+++.+.+......++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee--EEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            34599999999999999999999998876443 333322  22233333  67899999999999999999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Q 048709          106 VVYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFA-----EDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       106 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~  179 (203)
                      +++|.++..++.....+......... ...|+++|+||+|+..  ....+++....     ...++++++|||++|.|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccc--cCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            99999999988887666655554444 7899999999999876  33444454443     2345689999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          180 TAFFRLLQEI  189 (203)
Q Consensus       180 ~~~~~i~~~~  189 (203)
                      +++++|.+.+
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.3e-25  Score=154.63  Aligned_cols=151  Identities=21%  Similarity=0.289  Sum_probs=119.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEe
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYD  109 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d  109 (203)
                      ||+++|++|||||||+|+|.++++... .++.+..  ......  ..+.+.+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWHPT--SEELAI--GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCSCE--EEEECC--TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceeeEe--EEEecc--CCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            799999999999999999999887533 3444332  223323  33567899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH------------HcCCeEEEEecCCCC
Q 048709          110 ITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVEFAE------------DQGLFFSEASALNGD  176 (203)
Q Consensus       110 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~sa~~~~  176 (203)
                      .++..++.....++........ .+.|+++++||.|+..  .....++.+...            ...+++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999888888777766655444 7899999999999976  445555554432            123469999999999


Q ss_pred             CHHHHHHHHHH
Q 048709          177 NVDTAFFRLLQ  187 (203)
Q Consensus       177 ~i~~~~~~i~~  187 (203)
                      |++++|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=154.87  Aligned_cols=158  Identities=22%  Similarity=0.381  Sum_probs=121.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ..+||+++|.+|||||||+++++++++.... ++.+  ........++  +.+.+||.+|...+......++...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3589999999999999999999998875433 3332  2333333444  578899999999999999999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCcccCCCHHHHHH-----HHHHcCCeEEEEecCCCCCHHH
Q 048709          107 VYDITKRQSFDHVARGVEELRAHAD-SSIRIILIGNKSDLVDMWAVSAEDVVE-----FAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      ++|+.+..++.....++........ ...|+++++||.|+.+.  ....++..     ++....+++++|||++|.||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  156 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE  156 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccc--ccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH
Confidence            9999988877777665555444333 77899999999999763  33334433     2334567899999999999999


Q ss_pred             HHHHHHHHHHH
Q 048709          181 AFFRLLQEIYA  191 (203)
Q Consensus       181 ~~~~i~~~~~~  191 (203)
                      +|++|++.+.+
T Consensus       157 ~~~~l~~~l~~  167 (169)
T d1upta_         157 AMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999987743

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=7e-26  Score=159.95  Aligned_cols=155  Identities=19%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccC-CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHhhhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFD-SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--------RAVTSAYYR   99 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~   99 (203)
                      -.|+|+|.+|||||||+|+|++.+.... ..+..+...........+  ..+.+|||||....        ......++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            4699999999999999999999875432 223333344444444454  46789999995332        223344578


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCCH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDNV  178 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i  178 (203)
                      .+|++++|+|++++..... ..+...+ +....+.|+++|+||+|+...   ..+....+....+ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l-~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARAL-KPLVGKVPILLVGNKLDAAKY---PEEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHH-GGGTTTSCEEEEEECGGGCSS---HHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhhe-eccccchhhhhhhcccccccC---HHHHHHHHHhhcccCceEEEecCCCCCH
Confidence            9999999999988644332 2333333 334467899999999998652   1223334444444 57899999999999


Q ss_pred             HHHHHHHHHHHH
Q 048709          179 DTAFFRLLQEIY  190 (203)
Q Consensus       179 ~~~~~~i~~~~~  190 (203)
                      ++++++|++.+.
T Consensus       159 ~~L~~~i~~~lp  170 (178)
T d1wf3a1         159 AELKADLLALMP  170 (178)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999988664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=3.5e-25  Score=156.58  Aligned_cols=159  Identities=16%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh-------hhhhHhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY-------RAVTSAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~d  102 (203)
                      +|+++|.+|||||||+|+|++...........+......... .....++.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee-ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            499999999999999999998876655544444444433333 223346789999994321       112234578899


Q ss_pred             EEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          103 GAVVVYDITKR--QSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       103 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      ++++++|+...  .+......++..... ...+.|+++|+||+|+....  ..++..+.+...+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~NK~D~~~~~--~~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDP-ALLRRPSLVALNKVDLLEEE--AVKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCH-HHHHSCEEEEEECCTTSCHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccc-ccchhhhhhhhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998763  333333344333221 11357899999999997632  33456666677889999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 048709          181 AFFRLLQEIYAL  192 (203)
Q Consensus       181 ~~~~i~~~~~~~  192 (203)
                      +++.|.+.+...
T Consensus       159 L~~~i~~~l~~~  170 (180)
T d1udxa2         159 LKEALHALVRST  170 (180)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhc
Confidence            999998887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1e-25  Score=156.43  Aligned_cols=151  Identities=22%  Similarity=0.223  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh--------hhhHhhhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR--------AVTSAYYR   99 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~   99 (203)
                      +||+++|.+|||||||+|+|++.+... ...+..+.......+...+  ..+.+||+||.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999877653 2333333334444455555  457899999943221        22345678


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      .+|++++++|..+..+......|...+.. ...+.|+++|+||+|+......       +....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh-cccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            99999999999987766666555444443 3457899999999998653211       112345789999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          180 TAFFRLLQEI  189 (203)
Q Consensus       180 ~~~~~i~~~~  189 (203)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=3.1e-24  Score=151.80  Aligned_cols=156  Identities=21%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ...||+++|.+|||||||+++|.+..+.... ++.+...  ..+..++  ..+.+||+.+...+......++...+++++
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            4589999999999999999999998875443 4433333  3344555  456899999999888888999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHc-----------------CCeEE
Q 048709          107 VYDITKRQSFDHVARGVEELRAHA-DSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQ-----------------GLFFS  168 (203)
Q Consensus       107 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~  168 (203)
                      ++|..+...+.....++....... ..+.|+++++||.|++.  ....+++.+.....                 +++++
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  164 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEE
Confidence            999999888887766555544433 37899999999999876  45666666555321                 24689


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 048709          169 EASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       169 ~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      +|||++|.|++++|+||++.+
T Consensus       165 ~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         165 MCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEeCCCCCCHHHHHHHHHHhh
Confidence            999999999999999998753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.6e-24  Score=151.89  Aligned_cols=156  Identities=21%  Similarity=0.172  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccC-CCCCcceeeEEEEEEECCEEEEEEEEeCCCchh---------hhhhhHhhhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFD-SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER---------YRAVTSAYYR   99 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~   99 (203)
                      +|+|+|.+|||||||+|+|++...... ..+..+.......+....  ..+.+||++|...         +......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            699999999999999999998765422 222222222333333333  5678999999321         2223344578


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHH
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVD  179 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~  179 (203)
                      .+|+++++.+.+....... ..++..+..   .++|+++|+||+|+...  ...+...++.......++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            9999999999887544332 234444443   36799999999998752  22222233333344567899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 048709          180 TAFFRLLQEIYALS  193 (203)
Q Consensus       180 ~~~~~i~~~~~~~~  193 (203)
                      +++++|++.+.+..
T Consensus       154 ~L~~~i~~~l~e~~  167 (171)
T d1mkya1         154 TMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999999876643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.1e-25  Score=157.84  Aligned_cols=159  Identities=17%  Similarity=0.171  Sum_probs=122.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|..|||||||+++|....+  .+.||.|....  .+..  ..+.+.+||++|++.+...+..++..+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY--PFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE--EEEC--SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE--EEec--cceeeeeccccccccccccccccccccceeeEe
Confidence            58999999999999999999988876  35577776543  3333  446789999999999999999999999999999


Q ss_pred             EeCCCHH-----------HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc----------------cCCCHHHHHHHH
Q 048709          108 YDITKRQ-----------SFDHVARGVEELRAHADSSIRIILIGNKSDLVDM----------------WAVSAEDVVEFA  160 (203)
Q Consensus       108 ~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  160 (203)
                      +|.++..           .++....|...+......+.|+++++||.|+...                .+...+....+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998743           3455666766666666689999999999997532                122333333332


Q ss_pred             H----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          161 E----------DQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       161 ~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      .          ...+.+++|||++|.||+++|+.+.+.|.+.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            2          1234578999999999999999998888754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.4e-24  Score=154.86  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=113.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|..|||||||+++|....++     +.+.  ....+...  .+.+.+||++|++.+...+..|++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~--~~~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI--VETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSE--EEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC-----CccE--EEEEEEee--eeeeeeeccccccccccchhhcccCCceeeeE
Confidence            589999999999999999999876653     3332  22333333  46789999999999999999999999999999


Q ss_pred             EeCCCHHHH-----------HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc---------------cCCCHHHHHHHH-
Q 048709          108 YDITKRQSF-----------DHVARGVEELRAHADSSIRIILIGNKSDLVDM---------------WAVSAEDVVEFA-  160 (203)
Q Consensus       108 ~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~-  160 (203)
                      +|.++..++           +....|...+........|+++++||+|+...               ......+...+. 
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999886654           23344444455555578999999999996321               112222222211 


Q ss_pred             ----H------HcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          161 ----E------DQGLFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       161 ----~------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                          .      ...+++++|||++|.||+++|+.+.+.+..
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence                1      123567889999999999999999887754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=1.2e-23  Score=148.46  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=105.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceee-------EEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEF-------QTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYR   99 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   99 (203)
                      ..++|+++|++++|||||+|+|++.........+.....       .......++  ..+.++|+||...+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            468999999999999999999997543322211111111       111112222  45789999999988888888899


Q ss_pred             CCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHH----cCCeEEEEecC
Q 048709          100 GALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS--AEDVVEFAED----QGLFFSEASAL  173 (203)
Q Consensus       100 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~sa~  173 (203)
                      .+|++++|+|+.+....... ..+..+..   .++|+++|+||+|+.......  .+....+...    ...+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~-~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG-EHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhh-hhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            99999999999985432222 22222332   478999999999997632111  1112222222    23689999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      +|.|++++++.|++.+.+.
T Consensus       158 ~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHHS
T ss_pred             CCcCHHHHHHHHHhcCCcc
Confidence            9999999999999988764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.1e-22  Score=144.24  Aligned_cols=160  Identities=20%  Similarity=0.143  Sum_probs=106.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCcc-CCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh------------hh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCF-DSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR------------AV   93 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~   93 (203)
                      ..+||+|+|.+|+|||||+|+|++..... ...+..+.......+..++.  .+.++|+||.....            ..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            46999999999999999999999876542 22233333333344555654  46889999953322            22


Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH-----cCCeEE
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED-----QGLFFS  168 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~  168 (203)
                      ...+++.+|++++|+|++.+..-+. ..++..+..   .+.|+++++||+|+....+...+++.+....     ...+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            3345688999999999987533222 233333333   4789999999999876545455555444433     235799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHh
Q 048709          169 EASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       169 ~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++||++|.|++++++.|.+.+..+
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999998877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=5.2e-24  Score=147.58  Aligned_cols=149  Identities=21%  Similarity=0.266  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccC-CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--------h-hhhHhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFD-SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--------R-AVTSAYY   98 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~-~~~~~~~   98 (203)
                      +||+++|.+|+|||||+|+|++.+.... ..+..+.......+...+  ..+.+|||||....        . ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999998765432 223333334444455555  45789999993211        0 1122346


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCH
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNV  178 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i  178 (203)
                      ..+|++++|+|++++.......-+ ..+     ...++++++||.|+.+  ....+++.. ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~--~~~~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVE--KINEEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCC--CCCHHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccc--hhhhHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            789999999999987654443221 111     3567999999999987  344444443 2345678999999999999


Q ss_pred             HHHHHHHHHH
Q 048709          179 DTAFFRLLQE  188 (203)
Q Consensus       179 ~~~~~~i~~~  188 (203)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.1e-23  Score=149.52  Aligned_cols=158  Identities=20%  Similarity=0.276  Sum_probs=110.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVV  107 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v  107 (203)
                      .+||+++|.+|||||||++++.   +...+.||.|...  ..+...+  ..+.+||++|++.+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   4556667777543  3444444  6789999999999999999999999999999


Q ss_pred             EeCCCH----------HHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcc----------------cCCCHHHHHHHH
Q 048709          108 YDITKR----------QSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDM----------------WAVSAEDVVEFA  160 (203)
Q Consensus       108 ~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~----------------~~~~~~~~~~~~  160 (203)
                      ++.++.          ..+.....++..+... ...++|+++++||+|+.+.                .....+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            999873          2344444555554433 3378999999999997531                112334444433


Q ss_pred             HH-----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          161 ED-----------QGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       161 ~~-----------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ..           ..+.+++|||+++.||+++|+.+.+.+...
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            22           135577899999999999999988877653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=4.1e-23  Score=146.10  Aligned_cols=149  Identities=22%  Similarity=0.215  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCch---------------hhhhhh
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQE---------------RYRAVT   94 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------------~~~~~~   94 (203)
                      .|+++|.+|+|||||+|+|++.+......+..+.+  ...+...    .+.+|||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            58999999999999999999987655444433333  2333333    35789999931               111223


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHH----------HHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHH-HHHHc
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVA----------RGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVE-FAEDQ  163 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~  163 (203)
                      ...++.+|++++|+|+..........          ..++.+..   .+.|+++|+||+|+...    .++... +....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN----VQEVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC----HHHHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhh----HHHHHHHHHHHh
Confidence            34567899999999998643222211          12222222   47899999999998653    222222 22222


Q ss_pred             C-------CeEEEEecCCCCCHHHHHHHHHHHHHH
Q 048709          164 G-------LFFSEASALNGDNVDTAFFRLLQEIYA  191 (203)
Q Consensus       164 ~-------~~~~~~sa~~~~~i~~~~~~i~~~~~~  191 (203)
                      .       ..++++||++|.|+++++++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2       248899999999999999999988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=1.1e-23  Score=149.29  Aligned_cols=157  Identities=17%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh----h---hHhhhcCCc
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA----V---TSAYYRGAL  102 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~d  102 (203)
                      +|+++|.+|||||||+|+|++.+......+..+.........+.+ ...+.+|||||......    +   ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            699999999999999999998876655545555555444444432 13578999999532111    1   112345678


Q ss_pred             EEEEEEeCCCHHH---HHHH--HHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEecCCC
Q 048709          103 GAVVVYDITKRQS---FDHV--ARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASALNG  175 (203)
Q Consensus       103 ~~i~v~d~~~~~s---~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa~~~  175 (203)
                      .++++++......   .+..  .............++|+++|+||+|+.+.    .+....+...  .+.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCC
Confidence            8888887654321   1111  11112222222256899999999999763    2233333333  3678999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 048709          176 DNVDTAFFRLLQEIYA  191 (203)
Q Consensus       176 ~~i~~~~~~i~~~~~~  191 (203)
                      .|++++++.|.+.+.+
T Consensus       158 ~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         158 EGLRELLFEVANQLEN  173 (185)
T ss_dssp             STTHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999988754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.3e-21  Score=140.88  Aligned_cols=124  Identities=21%  Similarity=0.213  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh-hhhHhhhcCCcEEEEEE
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR-AVTSAYYRGALGAVVVY  108 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~  108 (203)
                      +|+++|++|||||||+++|+++++.... ++.+.+.....+ .++..+.+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876654 454444333322 24456788999999998875 46678889999999999


Q ss_pred             eCCCHHHH-HHHHHHHHHH-Hhh--cCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 048709          109 DITKRQSF-DHVARGVEEL-RAH--ADSSIRIILIGNKSDLVDMWAVSAEDVV  157 (203)
Q Consensus       109 d~~~~~s~-~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~  157 (203)
                      |+++..++ .....++..+ ...  ....+|+++++||+|+++  ..+.+++.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~--a~~~~~i~  130 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM--AKSAKLIQ  130 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT--CCCHHHHH
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC--CCCHHHHH
Confidence            99997653 3444444333 222  235689999999999986  33444443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2e-21  Score=138.67  Aligned_cols=158  Identities=18%  Similarity=0.115  Sum_probs=93.4

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh----------hh-
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER----------YR-   91 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~-   91 (203)
                      .+.+.-.+|+|+|.+|||||||+|+|++.+.........+.+..........   .+.+.|+++...          .. 
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhh
Confidence            3344456899999999999999999998653222212222222222222222   234566665211          11 


Q ss_pred             --hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH-HHHHH----HcC
Q 048709           92 --AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV-VEFAE----DQG  164 (203)
Q Consensus        92 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----~~~  164 (203)
                        ......+..+|++++|+|++++..... ..+++.+..   .++|+++|+||+|+.....  .++. ..+..    ...
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~---~~~piivv~NK~D~~~~~~--~~~~~~~~~~~l~~~~~  168 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY---YGIPVIVIATKADKIPKGK--WDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCGGG--HHHHHHHHHHHHTCCTT
T ss_pred             HHhhhhccccchhhhhhhhhccccccccc-ccccccccc---ccCcceechhhccccCHHH--HHHHHHHHHHHhcccCC
Confidence              112234567799999999986533222 234444443   4689999999999865322  2222 22222    244


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          165 LFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       165 ~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      .+++.+||++|.|+++++++|.+.+
T Consensus       169 ~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            6799999999999999999998875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=2e-22  Score=147.19  Aligned_cols=164  Identities=18%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEE----------------ECCEEEEEEEEeCCCchhhhhhh
Q 048709           31 VVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVT----------------INSKIIKAQIWDTAGQERYRAVT   94 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~D~~g~~~~~~~~   94 (203)
                      |+|+|.+++|||||+++|++...........+.........                +.....++.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987532221111111111111111                11223467899999998887777


Q ss_pred             HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC-------------H-------H
Q 048709           95 SAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS-------------A-------E  154 (203)
Q Consensus        95 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~-------~  154 (203)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .++|+++++||+|+.+.....             .       +
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            777899999999999987433222 223333333   478999999999987542211             0       0


Q ss_pred             HHHHHHH---H---------------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhhccccc
Q 048709          155 DVVEFAE---D---------------QGLFFSEASALNGDNVDTAFFRLLQEIYALSKKELE  198 (203)
Q Consensus       155 ~~~~~~~---~---------------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~~~~~~  198 (203)
                      ...+...   .               ..++++++||++|.|++++++.|.....+...+++.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~~l~  225 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLK  225 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGE
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            1111111   1               114689999999999999999999988887776654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=8.3e-21  Score=135.48  Aligned_cols=162  Identities=20%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcCCCccCC---CC--CcceeeEEEEEEE-------------------CCEEEEEEE
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKNEFCFDS---KS--TIGVEFQTRTVTI-------------------NSKIIKAQI   81 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~---~~--~~~~~~~~~~~~~-------------------~~~~~~~~l   81 (203)
                      ...++|+++|..++|||||+++|++.......   ..  +....+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45689999999999999999999874322111   01  1111111111110                   112456899


Q ss_pred             EeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHH
Q 048709           82 WDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA--VSAEDVVEF  159 (203)
Q Consensus        82 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~  159 (203)
                      +||||+..|......-+..+|++++|+|+.+.......++.+..+....  ..++++++||+|+.+...  ...+.+.++
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999998877777889999999999987532223333333333332  345888999999876321  112333444


Q ss_pred             HHHc---CCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          160 AEDQ---GLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       160 ~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ....   .++++++||++|.|++++++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            4333   36899999999999999999988754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.8e-21  Score=141.61  Aligned_cols=159  Identities=15%  Similarity=0.193  Sum_probs=114.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVV  106 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~  106 (203)
                      ...||+++|..|||||||++++....+    .||.|.  ....+.+++  +.+.+||++|+..++..+..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999976543    356554  444455655  678999999999999999999999999999


Q ss_pred             EEeCCCH----------HHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCcccC----C--------------------
Q 048709          107 VYDITKR----------QSFDHVARGVEELRAH-ADSSIRIILIGNKSDLVDMWA----V--------------------  151 (203)
Q Consensus       107 v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~----~--------------------  151 (203)
                      |+|.++.          ..+.+...++..+... ...++|+++++||+|+.+.+.    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9999863          2233333334444333 337899999999999853210    0                    


Q ss_pred             ------CHHHHHHHHH-----H--------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Q 048709          152 ------SAEDVVEFAE-----D--------QGLFFSEASALNGDNVDTAFFRLLQEIYALS  193 (203)
Q Consensus       152 ------~~~~~~~~~~-----~--------~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~~  193 (203)
                            ..+++..+..     .        ..+..++|||.++.+|+.+|..+.+.|....
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                  1223333321     1        1244678999999999999999888887653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=1.1e-19  Score=130.55  Aligned_cols=161  Identities=16%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCC---CCcceee--EEEEEEE------------------------CCEEEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSK---STIGVEF--QTRTVTI------------------------NSKIIK   78 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~---~~~~~~~--~~~~~~~------------------------~~~~~~   78 (203)
                      .++|+++|..++|||||+++|++........   .....+.  .......                        ......
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            4899999999999999999998632211100   0000000  0011000                        112346


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC--CHHHH
Q 048709           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV--SAEDV  156 (203)
Q Consensus        79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  156 (203)
                      +.++||||+..|-.....-+..+|++|+|+|+.+.-...+.++.+..+...  ...|+++++||+|+.+....  ...++
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHHHHH
Confidence            899999999999877777788999999999998752122223333333332  23478999999999763211  11222


Q ss_pred             HHHHHHc---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q 048709          157 VEFAEDQ---GLFFSEASALNGDNVDTAFFRLLQEIY  190 (203)
Q Consensus       157 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~i~~~~~  190 (203)
                      ..+....   .++++++||++|.|++++++.|.+.+.
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            3333322   368999999999999999998887653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.7e-20  Score=130.82  Aligned_cols=155  Identities=22%  Similarity=0.161  Sum_probs=99.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEE-EEECCEEEEEEEEeCCCchhhhh---------hhHhhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRT-VTINSKIIKAQIWDTAGQERYRA---------VTSAYY   98 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~   98 (203)
                      -.|+|+|.+|+|||||+|+|++.+.........+....... ...+..  .+..+|++|......         ....+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccch
Confidence            45999999999999999999998766444333333333333 333443  456788887432211         112234


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcC-CeEEEEecCCCCC
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQG-LFFSEASALNGDN  177 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~  177 (203)
                      ..+++++++.|..+.....  ..+...+.   ....|.++++||+|...................+ .+++++||++|.|
T Consensus        84 ~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            5678888888887643221  12222222   2467889999999987643222334444444455 5899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 048709          178 VDTAFFRLLQEIY  190 (203)
Q Consensus       178 i~~~~~~i~~~~~  190 (203)
                      ++++++.|.+.+.
T Consensus       159 i~~L~~~i~~~lp  171 (179)
T d1egaa1         159 VDTIAAIVRKHLP  171 (179)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988663

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.81  E-value=3.6e-20  Score=131.79  Aligned_cols=157  Identities=17%  Similarity=0.111  Sum_probs=104.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC----------------CCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN----------------EFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYR   91 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   91 (203)
                      .++|+++|..++|||||+++|++.                ....+...  +.+.......+......+.++||||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~r--giTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERAR--GITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEET--TEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCC--CccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            489999999999999999999741                01111112  222333333343344678999999999988


Q ss_pred             hhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCC---CHHHHHHHHHHcC----
Q 048709           92 AVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAV---SAEDVVEFAEDQG----  164 (203)
Q Consensus        92 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~----  164 (203)
                      .....-+..+|++++|+|+.+...- +.++.+..+...  ...|+|+++||+|+....+.   -..++..++...+    
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  157 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence            8777788999999999999985322 223333333333  23578999999998653211   1223444554443    


Q ss_pred             -CeEEEEecCCC----------CCHHHHHHHHHHHH
Q 048709          165 -LFFSEASALNG----------DNVDTAFFRLLQEI  189 (203)
Q Consensus       165 -~~~~~~sa~~~----------~~i~~~~~~i~~~~  189 (203)
                       ++++++|+++|          .++.++++.|.+.+
T Consensus       158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence             67999999988          58888888776643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.77  E-value=4.7e-18  Score=122.89  Aligned_cols=149  Identities=23%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC--CCc-------------------------------cCCCCCcceeeEEEEEE
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN--EFC-------------------------------FDSKSTIGVEFQTRTVT   71 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~--~~~-------------------------------~~~~~~~~~~~~~~~~~   71 (203)
                      ....++|+++|..++|||||+.+|+..  .+.                               .+.....+.........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            446799999999999999999999631  110                               00001111222222222


Q ss_pred             ECCEEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccC
Q 048709           72 INSKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWA  150 (203)
Q Consensus        72 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  150 (203)
                      ..  ...+.++|+||+..|-.....-+..+|++++|+|+.+...-+. .+.+..+..   .+++ +++++||+|+.+..+
T Consensus        86 ~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~~~---~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          86 TA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             CS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTTSCH
T ss_pred             cc--ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHHHH---cCCCEEEEEEEccccccccc
Confidence            23  3568999999999998888888999999999999987432222 222222222   2443 889999999976422


Q ss_pred             CC----HHHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 048709          151 VS----AEDVVEFAEDQG-----LFFSEASALNGDNVD  179 (203)
Q Consensus       151 ~~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~  179 (203)
                      ..    .+++..++...+     ++++++||++|.|+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            21    223445555544     468999999999874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=4.2e-19  Score=127.17  Aligned_cols=140  Identities=17%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC------C--C---------ccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN------E--F---------CFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~------~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      .++|+++|++++|||||+++|+..      .  .         +.+..+..+.+.....+..++  .++.|+||||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            489999999999999999999631      0  0         000001222333333444444  56789999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHHcC--
Q 048709           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIR-IILIGNKSDLVDMWAV---SAEDVVEFAEDQG--  164 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  164 (203)
                      -.....-+..+|++|+|+|+.+....+.. +.+..+..   .++| +++++||+|+.+..+.   ..+++..+....+  
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            88777889999999999999885443333 33333333   3555 7778999998653211   1233444444433  


Q ss_pred             ---CeEEEEecC
Q 048709          165 ---LFFSEASAL  173 (203)
Q Consensus       165 ---~~~~~~sa~  173 (203)
                         ++++..|+.
T Consensus       157 ~~~i~~i~~sa~  168 (204)
T d2c78a3         157 GDEVPVIRGSAL  168 (204)
T ss_dssp             TTTSCEEECCHH
T ss_pred             cccceeeeeech
Confidence               467888765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.9e-18  Score=124.14  Aligned_cols=116  Identities=19%  Similarity=0.237  Sum_probs=79.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhhhhhhHhh----hcCCc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERYRAVTSAY----YRGAL  102 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~d  102 (203)
                      +..+|+++|++|||||||+|+|++.++.+    +++.......  ++.....+.+||+||...+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            34689999999999999999999987643    2222333333  33334567899999988766554443    45668


Q ss_pred             EEEEEEeCCC-HHHHHHHHHHH----HHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709          103 GAVVVYDITK-RQSFDHVARGV----EELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus       103 ~~i~v~d~~~-~~s~~~~~~~~----~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      .+++++|+.+ ..+++....|+    ..+......++|+++++||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888765 44444444443    3344455578999999999999763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.1e-18  Score=119.14  Aligned_cols=163  Identities=19%  Similarity=0.099  Sum_probs=84.9

Q ss_pred             CCCCCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEE-ECCEEEEEEEEeCCCch-------hhhhh
Q 048709           22 PDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVT-INSKIIKAQIWDTAGQE-------RYRAV   93 (203)
Q Consensus        22 ~~~~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-------~~~~~   93 (203)
                      +.+.+..++|+++|.+|+|||||+|+|++.+.........+......... ..+.. .+..++.++..       .....
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEECCCCC------CCHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccc-eeeeecccccchhhhhhhhhhhh
Confidence            34466789999999999999999999998775443322222222222222 22222 22222222211       11111


Q ss_pred             hHh---hhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHHc--CCe
Q 048709           94 TSA---YYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVS--AEDVVEFAEDQ--GLF  166 (203)
Q Consensus        94 ~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~  166 (203)
                      ...   .....+.++.+.+......... ..++..+..   ...++++++||+|+.+.....  .+++.+.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            111   1234445566666655332222 233333333   467899999999987632111  12222222222  357


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q 048709          167 FSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       167 ~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      ++.+||++|.|++++++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999998886643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=7.9e-16  Score=113.95  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=79.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCCc----------------cCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchh
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK--NEFC----------------FDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQER   89 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   89 (203)
                      -.+|+++|+.++|||||+.+|+.  +...                .+..+..++......+.+++  .+++|+||||...
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhh
Confidence            35799999999999999999853  1111                11112222333334444444  5689999999999


Q ss_pred             hhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           90 YRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        90 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      |.......+..+|++|+|+|+.+.-.-....- ++.+..   .++|.++++||+|..
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHHHT---TTCCEEEEEECTTST
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHH-HHHHHH---cCCCEEEEEeccccc
Confidence            98888888999999999999998644333333 344443   589999999999986

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.68  E-value=1.6e-15  Score=111.99  Aligned_cols=112  Identities=11%  Similarity=0.060  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCc------cC----------CCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN--EFC------FD----------SKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY   90 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   90 (203)
                      .+|+++|+.++|||||+.+|+..  ...      ..          .....+.......+..++  .+++++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            47999999999999999998531  110      00          012223444445555555  46789999999999


Q ss_pred             hhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 048709           91 RAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLV  146 (203)
Q Consensus        91 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  146 (203)
                      .......+..+|++++|+|+.+.-...... .+..+..   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHH-HHHhhhh---ccccccccccccccc
Confidence            888888899999999999999854433333 3333333   478999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.7e-16  Score=121.77  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=94.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcc---eeeEEEEEEECCEEEEEEEEeCCCchhhhhh-----hHhhh
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIG---VEFQTRTVTINSKIIKAQIWDTAGQERYRAV-----TSAYY   98 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~   98 (203)
                      .+++|+|+|.+|+|||||+|+|+|...........+   ++.....+...+ .-.+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            469999999999999999999998654322211111   111112222222 124789999996443222     22235


Q ss_pred             cCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-------cCCCHHH----HHH----HHHHc
Q 048709           99 RGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-------WAVSAED----VVE----FAEDQ  163 (203)
Q Consensus        99 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~----~~~----~~~~~  163 (203)
                      ..+|.++++.|..-.+...   ..+..+..   .++|+++|+||+|....       .....+.    +++    .....
T Consensus       134 ~~~d~~l~~~~~~~~~~d~---~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKNDI---DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHHHH---HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHHHH---HHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            6778888888765433222   23333433   47899999999996310       1122222    222    22233


Q ss_pred             CC---eEEEEecCC--CCCHHHHHHHHHHHHHHhhc
Q 048709          164 GL---FFSEASALN--GDNVDTAFFRLLQEIYALSK  194 (203)
Q Consensus       164 ~~---~~~~~sa~~--~~~i~~~~~~i~~~~~~~~~  194 (203)
                      ++   +++.+|..+  ..++.++.+.+.+.+.+..+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence            33   578888764  45899999888887765443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=6.9e-16  Score=111.86  Aligned_cols=149  Identities=19%  Similarity=0.214  Sum_probs=91.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC--CC-----------------------------ccCCCCCcceeeEEEEEEECCEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN--EF-----------------------------CFDSKSTIGVEFQTRTVTINSKI   76 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   76 (203)
                      .++|+++|..++|||||+.+|+..  -+                             ..+.....+....  ...++...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~--~~~~~~~~   80 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETKK   80 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccce--EEEEecCC
Confidence            589999999999999999998531  00                             0111111112222  22223334


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH------HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccC
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS------FDHVARGVEELRAHADSSIRIILIGNKSDLVDMWA  150 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  150 (203)
                      ..+.++||||+..|......-+.-+|++++|+|+.+...      ..+..+-+......  ...++|+++||+|+.....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTT
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccc
Confidence            678999999999999888888999999999999998421      11222222222222  2345888999999864211


Q ss_pred             --CCH----HHHHHHHHHcC-----CeEEEEecCCCCCHHH
Q 048709          151 --VSA----EDVVEFAEDQG-----LFFSEASALNGDNVDT  180 (203)
Q Consensus       151 --~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~  180 (203)
                        ...    +++..+....+     ++++++||..|.|+.+
T Consensus       159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              111    23334444433     5789999999998753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.2e-16  Score=114.38  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=96.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc--CCCc-----------------------------cCCCCCcceeeEEEEEEECCEE
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK--NEFC-----------------------------FDSKSTIGVEFQTRTVTINSKI   76 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   76 (203)
                      .++|+++|..++|||||+.+|+.  +.+.                             .+..+..+.+.....+..++  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            48999999999999999999852  1100                             01112223333334444444  


Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHH------HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSF------DHVARGVEELRAHADSSIR-IILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  149 (203)
                      .+++|+||||+..|-.....-+..+|++|+|+|+....--      .+.+..+..+..   .++| +|+++||+|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCCCC
Confidence            6789999999999988888889999999999999864210      122222222232   2454 78899999987632


Q ss_pred             CCCH----HHHHHHHHHcC-----CeEEEEecCCCCCHH
Q 048709          150 AVSA----EDVVEFAEDQG-----LFFSEASALNGDNVD  179 (203)
Q Consensus       150 ~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~  179 (203)
                      +...    +++..++...+     ++++.+|+..|.|+-
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            2222    34445555444     568999999998863

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.63  E-value=1e-15  Score=113.17  Aligned_cols=126  Identities=11%  Similarity=0.004  Sum_probs=78.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCC-CCcceeeEEEEEEECCEEEEEEEEeCCCchhhhh-------hhHh
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSK-STIGVEFQTRTVTINSKIIKAQIWDTAGQERYRA-------VTSA   96 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~   96 (203)
                      ....++|+++|.+|+|||||+|+|++.+...... +..+..........++  ..+.++||||......       ....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3467999999999999999999999987654432 2333344445555666  4578999999432111       1111


Q ss_pred             --hhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCcccCCCH
Q 048709           97 --YYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADS--SIRIILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        97 --~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~  153 (203)
                        .....|+++||++++... +.. ....+..+....+.  -.++++|+||+|...+.....
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~-~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNL-DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHH-HHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence              124568889998876521 111 12233333333332  246899999999876444444

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=2.3e-15  Score=110.32  Aligned_cols=151  Identities=17%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC--CCc-----------------------------cCCCCCcceeeEEEEEEECCE
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN--EFC-----------------------------FDSKSTIGVEFQTRTVTINSK   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   75 (203)
                      ..++|+++|..++|||||+.+|+..  .+.                             ....+..+........  ...
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~--~~~  100 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF--ETE  100 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE--ECS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccc--ccc
Confidence            4689999999999999999999421  000                             0000001111111111  122


Q ss_pred             EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHH---H---HHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCcc
Q 048709           76 IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQS---F---DHVARGVEELRAHADSSI-RIILIGNKSDLVDM  148 (203)
Q Consensus        76 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~  148 (203)
                      ...+.+.||||+..|-.....-...+|++++|+|+.+..-   +   .+..+.+..+...   ++ ++++++||+|+...
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTC
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCcc
Confidence            2468999999999998888888899999999999987321   1   1222333333332   34 37899999998642


Q ss_pred             c--CCCHH----HHHHHHHHc-------CCeEEEEecCCCCCHHHHH
Q 048709          149 W--AVSAE----DVVEFAEDQ-------GLFFSEASALNGDNVDTAF  182 (203)
Q Consensus       149 ~--~~~~~----~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~  182 (203)
                      .  +...+    ++..+....       .++++++||++|.|+.+++
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            1  11122    223232222       2579999999999997654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.51  E-value=2.9e-14  Score=108.18  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=90.6

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhcC------CC-----ccCCCC---------------CcceeeEEEEEEECC-----
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTKN------EF-----CFDSKS---------------TIGVEFQTRTVTINS-----   74 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~~------~~-----~~~~~~---------------~~~~~~~~~~~~~~~-----   74 (203)
                      .+.++|+|.|+||+|||||+++|...      +.     ++..+.               ........+.....+     
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            45699999999999999999998642      00     111100               000111111111111     


Q ss_pred             -------------EEEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEe
Q 048709           75 -------------KIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGN  141 (203)
Q Consensus        75 -------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n  141 (203)
                                   .++.+.|++|.|.-.-.   ......+|.+++|..+...+..+..+.-+..+        +-++|+|
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~--------aDi~vvN  197 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFEL--------ADMIAVN  197 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHHH--------CSEEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHhhh--------hheeeEe
Confidence                         02467788888733211   23455689999999998876655443322222        2389999


Q ss_pred             CCCCCcccCCCHHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          142 KSDLVDMWAVSAEDVVEFAE----------DQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       142 K~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      |+|+.+...........+..          .+..+++.|||++|.|+++++++|.+.....
T Consensus       198 KaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         198 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            99987632221111111211          1456799999999999999999998876543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=6.2e-14  Score=106.74  Aligned_cols=126  Identities=18%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCC--------------ccCCCCCcceeeEEEEEEE--------------CCEEEE
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK--NEF--------------CFDSKSTIGVEFQTRTVTI--------------NSKIIK   78 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~--~~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~   78 (203)
                      .+|+|+|+.++|||||+.+|+.  +..              ..+..+..+.......+..              +++.+.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   97 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   97 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence            4699999999999999999962  111              0111112222222222222              335677


Q ss_pred             EEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcc-cCCCHHHHH
Q 048709           79 AQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDM-WAVSAEDVV  157 (203)
Q Consensus        79 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~  157 (203)
                      ++++||||+..|.......++-+|++++|+|+.+.-......-| .....   .++|+++++||+|.... -....+++.
T Consensus        98 inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-~~a~~---~~~p~i~viNKiDr~~~el~~~~~~~~  173 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG---ERIKPVVVINKVDRALLELQVSKEDLY  173 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-HHHHH---cCCCeEEEEECcccccccHHhhHHHHH
Confidence            99999999999988888889999999999999986444433222 33333   47899999999997431 123444443


Q ss_pred             H
Q 048709          158 E  158 (203)
Q Consensus       158 ~  158 (203)
                      +
T Consensus       174 ~  174 (341)
T d1n0ua2         174 Q  174 (341)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.8e-14  Score=108.31  Aligned_cols=157  Identities=17%  Similarity=0.109  Sum_probs=87.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc------CCCc-----cCCCCCc---------------ceeeEEEEEEECCE---
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK------NEFC-----FDSKSTI---------------GVEFQTRTVTINSK---   75 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~------~~~~-----~~~~~~~---------------~~~~~~~~~~~~~~---   75 (203)
                      ..+.++|+|+|+||||||||+++|..      .++.     +..+.+-               ............+.   
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            34679999999999999999999863      2211     1111000               00011111111010   


Q ss_pred             ---------------EEEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEE
Q 048709           76 ---------------IIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIG  140 (203)
Q Consensus        76 ---------------~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~  140 (203)
                                     ++.+.+++|.|....   -..+...+|.+++|.++...+..+..+..+..+        +-++|+
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~Vv  199 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEE
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEE
Confidence                           134556666653221   123567789999999887665544443333332        238899


Q ss_pred             eCCCCCcccCC--CHHHHHHHHH-------HcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Q 048709          141 NKSDLVDMWAV--SAEDVVEFAE-------DQGLFFSEASALNGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       141 nK~D~~~~~~~--~~~~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~i~~~~~~~  192 (203)
                      ||+|.......  ...+......       .+..+++.|||.+|.|++++++.|.++....
T Consensus       200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence            99998753211  1112222222       2345799999999999999999998766543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=2e-14  Score=104.92  Aligned_cols=110  Identities=13%  Similarity=-0.071  Sum_probs=65.4

Q ss_pred             EEEEEeCCCchhhhhhhHh---h--hcCCcEEEEEEeCCC---HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           78 KAQIWDTAGQERYRAVTSA---Y--YRGALGAVVVYDITK---RQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        78 ~~~l~D~~g~~~~~~~~~~---~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      .+.+.|+||+..+......   .  ....+.+++++|+..   +..+............  ....|.++++||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~--~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH--HhCCCceeeeeccccccHH
Confidence            5789999997665332221   1  224567899999754   4443332211111111  1367899999999987531


Q ss_pred             CCCH--------HHH---------------HH---HHH--HcCCeEEEEecCCCCCHHHHHHHHHHHH
Q 048709          150 AVSA--------EDV---------------VE---FAE--DQGLFFSEASALNGDNVDTAFFRLLQEI  189 (203)
Q Consensus       150 ~~~~--------~~~---------------~~---~~~--~~~~~~~~~sa~~~~~i~~~~~~i~~~~  189 (203)
                      +...        +..               ..   ...  ...++++++||++|.|+++++..|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1100        000               00   001  1347899999999999999998887753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=2.5e-12  Score=95.76  Aligned_cols=84  Identities=23%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCE-------------E--EEEEEEeCCCchh---
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSK-------------I--IKAQIWDTAGQER---   89 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~l~D~~g~~~---   89 (203)
                      .++|++||.|+||||||+++|++.+......|..+.++..-.+.+...             .  ..+.++|.||...   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            489999999999999999999998876666577766666666655432             1  2578999999422   


Q ss_pred             ----hhhhhHhhhcCCcEEEEEEeCC
Q 048709           90 ----YRAVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        90 ----~~~~~~~~~~~~d~~i~v~d~~  111 (203)
                          .....-..++.+|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                2223345689999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=7.1e-11  Score=88.59  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=70.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-CCCcceeeEEEEEEE----------CCE--------------------
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-KSTIGVEFQTRTVTI----------NSK--------------------   75 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~--------------------   75 (203)
                      ...+|+|+|..++|||||+|+|++.++.+.. .+++..-.......-          .+.                    
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            3468999999999999999999998864433 233221111111110          000                    


Q ss_pred             -------------------EEEEEEEeCCCchh-------------hhhhhHhhhcCCcE-EEEEEeCCCHHHHHHHHHH
Q 048709           76 -------------------IIKAQIWDTAGQER-------------YRAVTSAYYRGALG-AVVVYDITKRQSFDHVARG  122 (203)
Q Consensus        76 -------------------~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~  122 (203)
                                         ...+.++|+||...             ...+...|+...+. +++|.++....+-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                               01368999999421             12345567777765 5566666654333333333


Q ss_pred             HHHHHhhcCCCCcEEEEEeCCCCCcc
Q 048709          123 VEELRAHADSSIRIILIGNKSDLVDM  148 (203)
Q Consensus       123 ~~~~~~~~~~~~p~ivv~nK~D~~~~  148 (203)
                      ...+   .....++++|+||+|....
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCT
T ss_pred             HHHh---CcCCCceeeEEeccccccc
Confidence            3332   2345679999999998754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=1.3e-11  Score=93.59  Aligned_cols=83  Identities=22%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEE--E--------------------CCEEEEEEEEeCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVT--I--------------------NSKIIKAQIWDTAG   86 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~l~D~~g   86 (203)
                      ++|+++|.|+||||||+|+|++.+......|.++.++..-...  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999999877666656665554332211  0                    11336789999999


Q ss_pred             chhhh-------hhhHhhhcCCcEEEEEEeCC
Q 048709           87 QERYR-------AVTSAYYRGALGAVVVYDIT  111 (203)
Q Consensus        87 ~~~~~-------~~~~~~~~~~d~~i~v~d~~  111 (203)
                      .....       ...-..++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            53211       11123467899999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=7.2e-11  Score=88.47  Aligned_cols=86  Identities=16%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCC-ccCCCCCcceeeEEEEEEECCE---------------EEEEEEEeCCCchh-
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEF-CFDSKSTIGVEFQTRTVTINSK---------------IIKAQIWDTAGQER-   89 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~-   89 (203)
                      ..++|+++|.|+||||||+|+|++... .....|.++.++....+.+...               ...+.+.|.||... 
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            459999999999999999999998754 3455577777766666655431               24688999998322 


Q ss_pred             ------hhhhhHhhhcCCcEEEEEEeCCC
Q 048709           90 ------YRAVTSAYYRGALGAVVVYDITK  112 (203)
Q Consensus        90 ------~~~~~~~~~~~~d~~i~v~d~~~  112 (203)
                            .....-..++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                  22234456899999999998854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.14  E-value=1.3e-10  Score=87.43  Aligned_cols=29  Identities=28%  Similarity=0.506  Sum_probs=25.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcCCCccC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKNEFCFD   56 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~~~~~~   56 (203)
                      ..+|+|+|..++|||||+|+|++.++.+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            35899999999999999999999886433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=8.5e-10  Score=81.56  Aligned_cols=59  Identities=22%  Similarity=0.398  Sum_probs=38.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQ   87 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   87 (203)
                      ....++|+|+|.||||||||+|+|.+.+..... +..|.+.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            346799999999999999999999998765443 4445554444444433   4789999994

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=2.6e-08  Score=70.38  Aligned_cols=91  Identities=16%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             EEEEEEeCCCchhhhhhh----Hhhh---c-----CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           77 IKAQIWDTAGQERYRAVT----SAYY---R-----GALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~----~~~~---~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      +.+.|+||+|...++...    ..+.   .     ..+-.++|+|+... +.+..+...+..+       -+--+|+||.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  166 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV-------NVTGIILTKL  166 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS-------CCCEEEEECG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc-------CCceEEEecc
Confidence            457999999953332211    1111   1     13568899998764 3333333332222       1235789999


Q ss_pred             CCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |...    ..-.+...+...+.|+..++  +|.++++
T Consensus       167 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         167 DGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9743    34567888889999988877  4655544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.52  E-value=3.8e-07  Score=64.17  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             EEEEEEeCCCchhhhh----h--hHhh--hcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCc
Q 048709           77 IKAQIWDTAGQERYRA----V--TSAY--YRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVD  147 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~----~--~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  147 (203)
                      ..+.|+||+|...+..    +  ...+  .-..+-+++|++++... ....+...+..    .  + +--+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~--~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S--K-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C--T-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c--C-cceEEEecccCCC
Confidence            3678999999543321    0  1111  12346688888887643 33333222221    1  1 2347799999754


Q ss_pred             ccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          148 MWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                          ..-.+...+...++|+..++  +|.++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence                56788888999999988877  4666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.48  E-value=1.4e-07  Score=66.29  Aligned_cols=91  Identities=13%  Similarity=0.079  Sum_probs=54.4

Q ss_pred             EEEEEEeCCCchhhhhh----hHhh---h-----cCCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           77 IKAQIWDTAGQERYRAV----TSAY---Y-----RGALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      ..+.|+||+|...+...    ...+   .     ...+-.++|+|++.. +....+...+..+.-       --+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~-------~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGL-------TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCC-------SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCC-------ceEEEecc
Confidence            46789999995433321    1111   1     134668889988764 444444444333321       25789999


Q ss_pred             CCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |...    ..-.+...+...+.|+..++.  |++.++
T Consensus       162 Det~----~~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTA----KGGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSC----CCTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            9754    334577778889999877773  544443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.48  E-value=4.4e-07  Score=63.70  Aligned_cols=84  Identities=17%  Similarity=0.020  Sum_probs=51.1

Q ss_pred             EEEEEEeCCCchhhhhhh----Hh--hhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCccc
Q 048709           77 IKAQIWDTAGQERYRAVT----SA--YYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMW  149 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  149 (203)
                      ..+.|+||+|....+...    ..  .....+-+++|.++...+ ....+..+...+    +   +--+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~---~~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G---VTGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C---CCEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C---CCeeEEeecCccc--
Confidence            467899999954332211    11  123557889999987654 333332222222    1   1247899999643  


Q ss_pred             CCCHHHHHHHHHHcCCeEEEEe
Q 048709          150 AVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                        ..-.+...+...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              34567888888999987665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=3.2e-08  Score=70.23  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      ..+++|.+|+|||||+|+|.+..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            57999999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=6.1e-07  Score=63.03  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCchhhhhh-h---H---hhhc-----CCcEEEEEEeCCCH-HHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 048709           77 IKAQIWDTAGQERYRAV-T---S---AYYR-----GALGAVVVYDITKR-QSFDHVARGVEELRAHADSSIRIILIGNKS  143 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~-~---~---~~~~-----~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  143 (203)
                      +.+.|+||+|....+.. .   .   ...+     ..+-.++|+|+... +....+...+..+.       +--+++||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVG-------LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSC-------CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccC-------CceEEEeec
Confidence            36789999995433221 1   1   1122     23568889988753 34444433333221       235789999


Q ss_pred             CCCcccCCCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Q 048709          144 DLVDMWAVSAEDVVEFAEDQGLFFSEASALNGDNVDT  180 (203)
Q Consensus       144 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~  180 (203)
                      |...    ..-.+...+...++|+..++  .|+++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9754    34567888889999988887  5665543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.5e-07  Score=67.04  Aligned_cols=61  Identities=11%  Similarity=0.030  Sum_probs=36.3

Q ss_pred             CcEEEEEEeCCCHHHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEe
Q 048709          101 ALGAVVVYDITKRQSFDHV-ARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEAS  171 (203)
Q Consensus       101 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s  171 (203)
                      .++++.|+|+........- ..+..++...      =++++||+|+...    .+.+++..+.  ..+++++++
T Consensus       122 l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         122 LDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGE----AEKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             EEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC
T ss_pred             ccchhhhhhhhhhhhhhhhhHHHHHHHHhC------CcccccccccccH----HHHHHHHHHHHhCCCeEEEee
Confidence            5788999999886433222 2222333332      2788999999762    2345555444  456787655

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=2.5e-07  Score=65.56  Aligned_cols=85  Identities=16%  Similarity=0.073  Sum_probs=60.9

Q ss_pred             hhhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHH--cCCeEEEEec
Q 048709           96 AYYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAED--QGLFFSEASA  172 (203)
Q Consensus        96 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~sa  172 (203)
                      ....+.|.+++|+++.+|+ +...+.+++-....   .++|.++|+||+|+.+..  ..+....+...  .+.+++.+|+
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEecc
Confidence            3467899999999998754 55556666555444   478999999999997632  22333444432  3478999999


Q ss_pred             CCCCCHHHHHHHH
Q 048709          173 LNGDNVDTAFFRL  185 (203)
Q Consensus       173 ~~~~~i~~~~~~i  185 (203)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999887665

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=2.5e-07  Score=67.98  Aligned_cols=91  Identities=15%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             hHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEecC
Q 048709           94 TSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEASAL  173 (203)
Q Consensus        94 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  173 (203)
                      ....++.+|++++|+|+..|.+..+  ..+..+.    .+.|.++|+||+|+.+..  ..++..++....+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecc
Confidence            4557899999999999998765433  2222222    267999999999997632  2344455556667889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 048709          174 NGDNVDTAFFRLLQEIYAL  192 (203)
Q Consensus       174 ~~~~i~~~~~~i~~~~~~~  192 (203)
                      ++.+..++...+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhh
Confidence            9999988887777666553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.3e-07  Score=67.31  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..+++|++|+|||||+|+|.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4579999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=3e-07  Score=65.32  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=59.6

Q ss_pred             hhcCCcEEEEEEeCCCHH-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH---HHHHHHcCCeEEEEec
Q 048709           97 YYRGALGAVVVYDITKRQ-SFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV---VEFAEDQGLFFSEASA  172 (203)
Q Consensus        97 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~sa  172 (203)
                      ...+.|.+++|+++.+|. +...+.+++-....   .+++.++|+||+|+.+... ..+.+   .+.....+++++.+|+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeec
Confidence            457899999999998763 55566665544433   5788999999999976311 12222   2334556899999999


Q ss_pred             CCCCCHHHHHHHH
Q 048709          173 LNGDNVDTAFFRL  185 (203)
Q Consensus       173 ~~~~~i~~~~~~i  185 (203)
                      +++.|++++..++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999888766544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.10  E-value=7.5e-07  Score=60.73  Aligned_cols=22  Identities=23%  Similarity=0.727  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.86  E-value=3.9e-06  Score=56.69  Aligned_cols=25  Identities=12%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +..++|++.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4569999999999999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=3.6e-06  Score=57.33  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.82  E-value=4e-06  Score=56.49  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++|+++|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.1e-06  Score=55.84  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|+|+|.+|||||||+++|..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999975

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.79  E-value=6.4e-06  Score=56.74  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=8.5e-06  Score=55.52  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.69  E-value=8.6e-06  Score=56.05  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++|+|.|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.67  E-value=1.4e-05  Score=55.10  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...++|+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.65  E-value=1.2e-05  Score=52.96  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |++.|+|||||||+.+.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.65  E-value=1.3e-05  Score=54.71  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=1.5e-05  Score=54.41  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.5e-05  Score=54.19  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.3e-05  Score=57.26  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcCCCccCC-----CCCcceeeEEEEEEE-CCEEEEEEEEeCCCch
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKNEFCFDS-----KSTIGVEFQTRTVTI-NSKIIKAQIWDTAGQE   88 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~   88 (203)
                      +..=|.|+|+.++|||+|+|.|++....-..     ..|.|+  ..+.... ++....+.++||.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Gi--w~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCce--EEEEeeccCCCCceEEEEeccccc
Confidence            3567899999999999999999987632211     123332  2222222 3444568899999953

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.1e-05  Score=53.64  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++|+|+|+|||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.53  E-value=2.9e-05  Score=53.42  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+..|+|+|+|||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998854

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.4e-05  Score=52.53  Aligned_cols=20  Identities=20%  Similarity=0.459  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.52  E-value=2.4e-05  Score=52.44  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|++.|++||||||+.+.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3e-05  Score=53.37  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++.|+|+|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=4e-05  Score=51.89  Aligned_cols=26  Identities=23%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.+.-|+++|.|||||||+.+++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998854

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.8e-05  Score=55.55  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =+|+|+|++|||||||++.|.+-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            46999999999999999999874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.1e-05  Score=51.28  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=4.2e-05  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +.=|+++|.|||||||+.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999974

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.5e-05  Score=52.11  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|.++|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.40  E-value=5.6e-05  Score=50.86  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+-|.++|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            458899999999999999988854

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.39  E-value=4.5e-05  Score=54.52  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++++|++|||||||++.|.+-
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999774

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.39  E-value=4.2e-05  Score=55.03  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++++|++|||||||++.|.+-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            47999999999999999999774

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.39  E-value=4.3e-05  Score=53.08  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+.-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999998743

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.36  E-value=4.8e-05  Score=51.52  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998853

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.2e-05  Score=53.72  Aligned_cols=23  Identities=39%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999987743

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.2e-05  Score=54.49  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++++|++|||||||++.+.+-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcc
Confidence            37899999999999999998774

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=1.4e-05  Score=54.56  Aligned_cols=21  Identities=24%  Similarity=0.556  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|+|++||||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.34  E-value=4.4e-05  Score=51.15  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+|+++|.+||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999988743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.34  E-value=5.2e-05  Score=53.68  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999887754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.31  E-value=6.5e-05  Score=50.42  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=6.1e-05  Score=55.03  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =.++|+|+.|||||||++.+.+.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            35899999999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.28  E-value=6.9e-05  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35789999999999999998854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.27  E-value=7.2e-05  Score=53.19  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58999999999999999998854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.27  E-value=6.5e-05  Score=50.16  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998743

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=9.3e-05  Score=50.58  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++=|+|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467799999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=7.4e-05  Score=51.11  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|+|++|||||||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=7.8e-05  Score=50.75  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+++|++||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=7.5e-05  Score=49.93  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      =++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.24  E-value=5.6e-05  Score=53.39  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            48999999999999999998854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.23  E-value=8.3e-05  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.23  E-value=8.5e-05  Score=50.46  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=17.8

Q ss_pred             eEEE-EEcCCCCcHHHHHHHHhc
Q 048709           29 FKVV-VIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~-vvG~~~sGKStli~~l~~   50 (203)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3565 579999999999998853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.8e-05  Score=53.06  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            57999999999999999998854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.21  E-value=0.00011  Score=52.99  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.-|++.|+||+|||||.++|.+
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.20  E-value=8.9e-05  Score=52.88  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999998854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.19  E-value=5.5e-05  Score=54.42  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =+++|+|++|||||||++.|.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4789999999999999988776

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=9.7e-05  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .--|+++|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999855

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.18  E-value=9.8e-05  Score=49.46  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999999865

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.18  E-value=0.0042  Score=44.40  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             EEEEEEeCCCchhhhh-hhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCc-EEEEEeCCCCCcccCCCH
Q 048709           77 IKAQIWDTAGQERYRA-VTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIR-IILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~  153 (203)
                      +.+.++|||+...... ........+|.++++.+. +..++..+...+..+..... .+.+ .-+++|+.+...    ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC----cc
Confidence            4688999986433222 222333567888877776 45666665555555554433 2333 347889987654    34


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 048709          154 EDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~  170 (203)
                      +.+.+++...+.+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             chhhhhHhhcCCeEEEE
Confidence            55666777777766553

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=7.4e-05  Score=53.01  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -++++|+.|||||||++.+.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999884

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00011  Score=52.39  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998854

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00013  Score=50.74  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998843

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00012  Score=50.17  Aligned_cols=20  Identities=40%  Similarity=0.640  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |+|+|++|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.00012  Score=50.36  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --|+|+|+|||||||+...|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999998854

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.12  E-value=0.00012  Score=52.73  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999998753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =|+|+||+|||||||++.|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.09  E-value=0.00014  Score=48.85  Aligned_cols=20  Identities=10%  Similarity=0.370  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 048709           30 KVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~   49 (203)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999884

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.08  E-value=0.00014  Score=52.36  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      -++++|+.|||||||++.+.+..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            47999999999999999998853

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=8.4e-05  Score=50.77  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356788999999999999998854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.07  E-value=7.6e-05  Score=53.13  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKNE   52 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~~   52 (203)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999998854

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.06  E-value=0.00025  Score=52.75  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+|+|.|++|||||||+++|+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999986

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.01  E-value=0.0002  Score=48.90  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      +++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4688999999999999999988643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.00092  Score=44.12  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-|++-|+-|||||||++.+..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHh
Confidence            46789999999999999999875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.0002  Score=50.71  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-.+++.|+||+||||+++.+.+
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999875

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.0063  Score=42.32  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCcccCCCHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRII-LIGNKSDLVDMWAVSAED  155 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~  155 (203)
                      +.+.++|+++....  .....+..+|.++++...+ ..+...+.+.+..+.+   .+.|++ +|+|+.+..+. ....+.
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~~-~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSDR-DIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCTT-CCCHHH
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhcccccccc-hhhhHH
Confidence            57889999875432  2344567799999988875 5566666666655554   355654 88999986543 344444


Q ss_pred             HHHH
Q 048709          156 VVEF  159 (203)
Q Consensus       156 ~~~~  159 (203)
                      ..++
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4444

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00021  Score=50.59  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+++.|+||+||||+.+.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999998865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.88  E-value=0.00038  Score=49.69  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +...|++.|+||+|||++++++.+
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            346799999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.86  E-value=0.0003  Score=49.08  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+.|+|-|++||||||....|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00037  Score=47.76  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -++++||+||+|||+++..|...
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            47899999999999999987654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.78  E-value=0.00036  Score=47.73  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..++-|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.78  E-value=0.00037  Score=49.00  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00041  Score=49.36  Aligned_cols=23  Identities=13%  Similarity=0.267  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-.+++.|+||+||||+++.+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999976

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.72  E-value=0.00056  Score=48.87  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...-.++|.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00047  Score=49.74  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .=++++||+||+|||++++.|...
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            347899999999999999987654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.68  E-value=0.00042  Score=49.87  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-+++.|+||+|||++++.+...
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHH
Confidence            34556799999999999998753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00046  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +-.|+++||||+|||.|.+++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            35689999999999999999865

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.62  E-value=0.014  Score=42.06  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             EEEEEEeCCCchhhhhhhHhh-hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcC-CCCcE-EEEEeCCCCCcccCCCH
Q 048709           77 IKAQIWDTAGQERYRAVTSAY-YRGALGAVVVYDITKRQSFDHVARGVEELRAHAD-SSIRI-ILIGNKSDLVDMWAVSA  153 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~~~~~  153 (203)
                      +.+.++|+|+..........+ ...++.++++... +..++..+...+..+..... .+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            567888988744322222222 2345666655544 45555555555555443322 34443 47889887533    23


Q ss_pred             HHHHHHHHHcCCeEEEE
Q 048709          154 EDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       154 ~~~~~~~~~~~~~~~~~  170 (203)
                      +...+++...+.+++.+
T Consensus       194 ~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         194 ELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            44566777777776653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.00055  Score=49.00  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00078  Score=49.57  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.3

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34679999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00061  Score=47.33  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|+|.|+|||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999998854

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00063  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.|++.|+||+|||++++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4599999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.51  E-value=0.0009  Score=46.43  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....-|.+.|.||||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00068  Score=47.64  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+++.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0011  Score=48.22  Aligned_cols=27  Identities=15%  Similarity=0.071  Sum_probs=22.3

Q ss_pred             CCCCeeeEEEEEcCCCCcHHHHHHHHh
Q 048709           23 DKIDYVFKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        23 ~~~~~~~~i~vvG~~~sGKStli~~l~   49 (203)
                      .....++=|+|-|.+|||||||...|.
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            344467999999999999999998763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00078  Score=46.35  Aligned_cols=22  Identities=14%  Similarity=0.416  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00093  Score=46.26  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .+-|+|+|..||||||+.+.|...
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC
Confidence            356899999999999999988644

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00068  Score=48.10  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -.+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00083  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+-.+++.|+||+|||++++++..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHH
Confidence            345699999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0011  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +-.|++.|+||+|||++++++..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            45699999999999999999876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.36  E-value=0.00091  Score=46.71  Aligned_cols=21  Identities=14%  Similarity=0.419  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00093  Score=46.70  Aligned_cols=21  Identities=14%  Similarity=0.442  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999999875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.32  E-value=0.0016  Score=44.90  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+-|+|+|..||||||+.+.|..
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            36699999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0011  Score=47.75  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-.|++.|++|+|||+|++++.+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHH
Confidence            345699999999999999999966

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0017  Score=44.84  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.0014  Score=50.64  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +=+|+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999998843

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.04  E-value=0.0019  Score=48.66  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=21.3

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +..-.+++.||||+|||+|.+++.+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3445899999999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=44.22  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .--+.|.|+||+|||+|+..+...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999988753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.00042  Score=47.25  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 048709           31 VVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~   49 (203)
                      .+|+|+.|||||||+.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0017  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=18.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .=++++||+||+|||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34569999999999999976543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.76  E-value=0.0012  Score=47.96  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 048709           30 KVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~   49 (203)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            39999999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0025  Score=44.06  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|+|-|..||||||+++.|..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377889999999998887744

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.73  E-value=0.0025  Score=48.61  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 048709           30 KVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~~   51 (203)
                      =|+|.|++||||||.++.++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3999999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0017  Score=45.51  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.71  E-value=0.0033  Score=42.18  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      .=|++.|++|+||||+.-.|..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999876543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.69  E-value=0.0014  Score=48.60  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998853

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0028  Score=44.33  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..--+.|.|+||+|||+|+..+...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3346889999999999999988654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.0021  Score=46.86  Aligned_cols=17  Identities=29%  Similarity=0.647  Sum_probs=16.0

Q ss_pred             EEEcCCCCcHHHHHHHH
Q 048709           32 VVIGDSAVGKSQILSRF   48 (203)
Q Consensus        32 ~vvG~~~sGKStli~~l   48 (203)
                      +++|+.||||||++.+|
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            78999999999999987

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.58  E-value=0.0034  Score=44.21  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..--++|.|+||+|||+|..++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3346889999999999999988653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.53  E-value=0.0041  Score=41.71  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      .=|++.|++|+||||+.-.|...-.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999876543

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.46  E-value=0.0038  Score=45.07  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      .-|+|+|.+|+|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999988753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.44  E-value=0.0034  Score=42.93  Aligned_cols=26  Identities=23%  Similarity=0.158  Sum_probs=22.0

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+..-.+++.|++++|||.|+++|..
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHH
Confidence            34557899999999999999998764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.43  E-value=0.0042  Score=43.54  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=21.9

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      -+..--++|.|+||+|||+|+.++...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            344567889999999999999988654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0041  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.665  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 048709           29 FKVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~   49 (203)
                      ++ +|+|+.|||||+++.+|.
T Consensus        27 l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EE-EEECSTTSSHHHHHHHHH
T ss_pred             EE-EEECCCCCCHHHHHHHHH
Confidence            54 578999999999999973

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0047  Score=43.28  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --|+|=|..||||||+++.|..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3588999999999999999865

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.20  E-value=0.0058  Score=40.68  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 048709           29 FKVVVIGDSAVGKSQILSRFTKNEF   53 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~~~~   53 (203)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            5689999999999999988876543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.18  E-value=0.0077  Score=44.61  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=22.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..++|.|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5799999999999999999988763

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.10  E-value=0.006  Score=42.25  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.05  E-value=0.0062  Score=42.48  Aligned_cols=22  Identities=23%  Similarity=0.160  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      --++|.|++|+|||+|+..+..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.04  E-value=0.0057  Score=45.95  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-+++++||+|||||-|.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45699999999999999998853

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.04  E-value=0.0075  Score=44.56  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..++|+|=|.-||||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            568899999999999999998864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.02  E-value=0.0067  Score=42.52  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998854

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.01  E-value=0.007  Score=44.55  Aligned_cols=20  Identities=25%  Similarity=0.542  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      ++++|+||+|||.|.++|.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.01  Score=43.60  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      -.++++|++|+|||.|.+.|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999998854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.007  Score=42.45  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-+..--++|.|+||+|||+|..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344456789999999999999999875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.0076  Score=41.67  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|+|-|..||||||+++.|..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998854

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0078  Score=42.26  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      -+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999998754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.82  E-value=0.0074  Score=44.68  Aligned_cols=25  Identities=20%  Similarity=0.394  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..++|+|=|.-||||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3588999999999999999999763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0087  Score=41.12  Aligned_cols=20  Identities=5%  Similarity=0.343  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      +++.|++|+||||+++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.67  E-value=0.092  Score=37.37  Aligned_cols=25  Identities=12%  Similarity=0.057  Sum_probs=20.2

Q ss_pred             CeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           26 DYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        26 ~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      +..-=+.+.|++++|||+|+-.+..
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHH
Confidence            3445678999999999999988765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.66  E-value=0.0092  Score=41.27  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=19.2

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..--+.|.|++|+|||+|+..+..
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345678899999999999877643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.52  E-value=0.009  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .-+++|+|.+|||||+++..+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            46799999999999999887654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.51  E-value=0.0071  Score=43.75  Aligned_cols=15  Identities=20%  Similarity=0.620  Sum_probs=13.0

Q ss_pred             EEEEcCCCCcHHHHH
Q 048709           31 VVVIGDSAVGKSQIL   45 (203)
Q Consensus        31 i~vvG~~~sGKStli   45 (203)
                      ++|+|.+||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.42  E-value=0.012  Score=42.12  Aligned_cols=20  Identities=25%  Similarity=0.406  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 048709           31 VVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~   50 (203)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.20  E-value=0.01  Score=43.26  Aligned_cols=15  Identities=20%  Similarity=0.674  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 048709           31 VVVIGDSAVGKSQIL   45 (203)
Q Consensus        31 i~vvG~~~sGKStli   45 (203)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.15  E-value=0.017  Score=41.28  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             CCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           25 IDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        25 ~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      .+..-.+.+.|++++|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34567899999999999999998865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.016  Score=41.23  Aligned_cols=19  Identities=16%  Similarity=0.300  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 048709           31 VVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~   49 (203)
                      .+|.|++|+|||+|+-.|.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.026  Score=35.03  Aligned_cols=24  Identities=17%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+.|.+.|..||||||+.++|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            458999999999999999999854

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.028  Score=40.56  Aligned_cols=22  Identities=14%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|++++|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            4899999999999999988765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.027  Score=42.10  Aligned_cols=19  Identities=21%  Similarity=0.483  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 048709           30 KVVVIGDSAVGKSQILSRF   48 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l   48 (203)
                      -.+|.|+||+||||++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.87  E-value=0.1  Score=33.69  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             eeeEEEEEcC-CCCcHHHHHHHHhcCCC
Q 048709           27 YVFKVVVIGD-SAVGKSQILSRFTKNEF   53 (203)
Q Consensus        27 ~~~~i~vvG~-~~sGKStli~~l~~~~~   53 (203)
                      +++||+|+|. .++|-+ +...|..++.
T Consensus         3 ~p~KV~IiGA~G~VG~~-~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYS-LLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHH-HHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHH-HHHHHHhccc
Confidence            4689999996 789965 5556665554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.67  E-value=0.047  Score=39.93  Aligned_cols=21  Identities=19%  Similarity=0.523  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578999999999999997643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.21  E-value=0.0094  Score=42.19  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHhc
Q 048709           28 VFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        28 ~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..-|+|.|++|+||+.+.+.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            34589999999999999999875

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.048  Score=38.80  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhcC
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~~   51 (203)
                      ..-=+.|.|++|+|||||+-.+...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH
Confidence            3456789999999999999877653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.059  Score=37.61  Aligned_cols=18  Identities=22%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 048709           31 VVVIGDSAVGKSQILSRF   48 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l   48 (203)
                      +++.|+..+||||+++++
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            689999999999999986

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.21  E-value=0.065  Score=37.11  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 048709           31 VVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~   49 (203)
                      +++.|+..+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999863

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.20  E-value=0.062  Score=33.71  Aligned_cols=20  Identities=15%  Similarity=0.071  Sum_probs=15.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 048709           30 KVVVIGDSAVGKSQILSRFT   49 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~   49 (203)
                      ..+|.+++|+|||+++-.+.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            34678999999998876543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.13  E-value=0.057  Score=36.06  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 048709           31 VVVIGDSAVGKSQILSRFTKN   51 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l~~~   51 (203)
                      |+|+|..+||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998753

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.97  E-value=0.44  Score=31.36  Aligned_cols=101  Identities=12%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CeeeEEEEEcC-CCCcHHHHHHHHhcCCCccCCCCCcceeeEEEEEEECCEEEEEEEEeCCCchhh--------------
Q 048709           26 DYVFKVVVIGD-SAVGKSQILSRFTKNEFCFDSKSTIGVEFQTRTVTINSKIIKAQIWDTAGQERY--------------   90 (203)
Q Consensus        26 ~~~~~i~vvG~-~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------------   90 (203)
                      ..++||+|+|. .+.|-| |+..|..++.....                 ..+.+++.|.+.....              
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            35799999996 677865 55566655432211                 1234566676652211              


Q ss_pred             -------hhhhHhhhcCCcEEEEEEeCCCH--HHHHH--------HHHHHHHHHhhcCCCCcEEEEEeCCC
Q 048709           91 -------RAVTSAYYRGALGAVVVYDITKR--QSFDH--------VARGVEELRAHADSSIRIILIGNKSD  144 (203)
Q Consensus        91 -------~~~~~~~~~~~d~~i~v~d~~~~--~s~~~--------~~~~~~~~~~~~~~~~p~ivv~nK~D  144 (203)
                             ..-....+.++|+++++-.....  .+..+        ++.+...+.+...++.-++++.|=.|
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence                   01112346888988888766431  11111        23445555665555555666665444

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.57  E-value=0.088  Score=37.58  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 048709           30 KVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        30 ~i~vvG~~~sGKStli~~l~~   50 (203)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999888764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.83  E-value=0.44  Score=30.50  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=18.6

Q ss_pred             eeeEEEEEcC-CCCcHHHHHHHHhcCCC
Q 048709           27 YVFKVVVIGD-SAVGKSQILSRFTKNEF   53 (203)
Q Consensus        27 ~~~~i~vvG~-~~sGKStli~~l~~~~~   53 (203)
                      .++||+|+|. .++|.+... .|..+..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~~   28 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGSV   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHHh
Confidence            4689999995 789987554 5555443

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.49  E-value=0.095  Score=37.99  Aligned_cols=14  Identities=36%  Similarity=0.520  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 048709           32 VVIGDSAVGKSQIL   45 (203)
Q Consensus        32 ~vvG~~~sGKStli   45 (203)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.86  E-value=0.11  Score=37.85  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 048709           31 VVVIGDSAVGKSQIL   45 (203)
Q Consensus        31 i~vvG~~~sGKStli   45 (203)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999975

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.51  E-value=0.18  Score=35.80  Aligned_cols=27  Identities=11%  Similarity=0.123  Sum_probs=21.1

Q ss_pred             CCCeeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           24 KIDYVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        24 ~~~~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ..+..-=+.+.|++++|||+|+-.+..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHH
Confidence            344556678999999999999877654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.45  E-value=0.12  Score=37.56  Aligned_cols=14  Identities=36%  Similarity=0.520  Sum_probs=13.1

Q ss_pred             EEEcCCCCcHHHHH
Q 048709           32 VVIGDSAVGKSQIL   45 (203)
Q Consensus        32 ~vvG~~~sGKStli   45 (203)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999987

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.38  E-value=0.2  Score=33.71  Aligned_cols=24  Identities=4%  Similarity=0.105  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCcHHHHHHHHhc
Q 048709           27 YVFKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        27 ~~~~i~vvG~~~sGKStli~~l~~   50 (203)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999988765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=0.21  Score=35.39  Aligned_cols=39  Identities=26%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCC
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRI-ILIGNKSD  144 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  144 (203)
                      ..+++|.... +-+.....+.+..+...   ++|+ -+|+|+.-
T Consensus       199 t~~~lVt~pe-~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARLQ-KSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEESC-HHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             ceeeEecCcc-hhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            3566665553 56677777777776654   3443 57789863

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.18  Score=35.60  Aligned_cols=18  Identities=22%  Similarity=0.639  Sum_probs=13.9

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 048709           31 VVVIGDSAVGKSQILSRF   48 (203)
Q Consensus        31 i~vvG~~~sGKStli~~l   48 (203)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455599999999986544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.08  E-value=0.14  Score=36.67  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4789999999999999876654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.83  E-value=0.26  Score=33.10  Aligned_cols=64  Identities=9%  Similarity=-0.009  Sum_probs=33.6

Q ss_pred             cEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEE
Q 048709          102 LGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEA  170 (203)
Q Consensus       102 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (203)
                      ..+++|.+...... .........+...  .....-+|+|+.|...  ....+-+..+.+..+++++-+
T Consensus       139 ~~v~~V~~~~~~~~-~~~~~~~~~~~~~--~~~~~gvv~N~~~~~~--~~~~~~~~~l~~~~gi~vlG~  202 (224)
T d1byia_         139 LPVILVVGVKLGCI-NHAMLTAQVIQHA--GLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLGE  202 (224)
T ss_dssp             CCEEEEEECSTTHH-HHHHHHHHHHHHT--TCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEEE
T ss_pred             ceeeEEEeeccchh-HHHHHHHHHHhcc--CCccEEEEEeCcCCCc--hHHHHHHHHHHHHhCCCEEEE
Confidence            34555555554332 2222233333332  2344678899988654  233444555666778887643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.59  E-value=0.2  Score=35.70  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 048709           29 FKVVVIGDSAVGKSQILSRFTK   50 (203)
Q Consensus        29 ~~i~vvG~~~sGKStli~~l~~   50 (203)
                      =|++++|.+|+|||+|+..+..
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHHh
Confidence            4789999999999999876543

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=83.08  E-value=3.1  Score=26.82  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=30.4

Q ss_pred             CCCcEEEEEeCCCCCcccCCCHHHHHHHHHHcCCeEEEEe
Q 048709          132 SSIRIILIGNKSDLVDMWAVSAEDVVEFAEDQGLFFSEAS  171 (203)
Q Consensus       132 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  171 (203)
                      .+.|+|+++......+    ..+++.+++...++|++.+.
T Consensus        22 AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1          22 RDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            5789999999887644    57899999999999998764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.54  E-value=4.7  Score=26.73  Aligned_cols=84  Identities=7%  Similarity=-0.080  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCchhhhhhhHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 048709           77 IKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARGVEELRAHADSSIRIILIGNKSDLVDMWAVSAEDV  156 (203)
Q Consensus        77 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  156 (203)
                      +.+.++|+|+....  .....+..+|.+++|...+ ..+.....+.+..+.+..  ..++-+|+|+.+....    ....
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~----~~~~  180 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGI----EMAK  180 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTH----HHHH
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc--cccccccccccccccc----cchh
Confidence            45789999875433  2334566789999988875 445555544444444432  1234578999864321    1222


Q ss_pred             HHHHHHcCCeEEE
Q 048709          157 VEFAEDQGLFFSE  169 (203)
Q Consensus       157 ~~~~~~~~~~~~~  169 (203)
                      ..+....+.+++.
T Consensus       181 ~~i~~~~~~~~~~  193 (232)
T d1hyqa_         181 NEIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHHTTSCEEE
T ss_pred             hhHHhhcCCeEEE
Confidence            3444556666553

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=81.96  E-value=0.45  Score=29.97  Aligned_cols=17  Identities=24%  Similarity=0.552  Sum_probs=13.7

Q ss_pred             EEEcCCCCcHHH-HHHHH
Q 048709           32 VVIGDSAVGKSQ-ILSRF   48 (203)
Q Consensus        32 ~vvG~~~sGKSt-li~~l   48 (203)
                      +++|+=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 66655

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.56  E-value=0.23  Score=30.59  Aligned_cols=15  Identities=20%  Similarity=0.271  Sum_probs=12.6

Q ss_pred             eEEEEEcCCCCcHHH
Q 048709           29 FKVVVIGDSAVGKSQ   43 (203)
Q Consensus        29 ~~i~vvG~~~sGKSt   43 (203)
                      -++++.+++|+|||.
T Consensus         8 ~~~il~~~tGsGKT~   22 (140)
T d1yksa1           8 MTTVLDFHPGAGKTR   22 (140)
T ss_dssp             CEEEECCCTTSSTTT
T ss_pred             CcEEEEcCCCCChhH
Confidence            467888999999993

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.58  E-value=0.54  Score=31.05  Aligned_cols=15  Identities=20%  Similarity=0.472  Sum_probs=12.5

Q ss_pred             EEEEEcCCCCcHHHH
Q 048709           30 KVVVIGDSAVGKSQI   44 (203)
Q Consensus        30 ~i~vvG~~~sGKStl   44 (203)
                      ++++++++|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            367889999999964