Citrus Sinensis ID: 048747

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------132
LIKSDSQGSNDALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGDEGFGRRRNRRFRRMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYRGRKKKVKAEKRGNYGGEYFRGRKKNVGSNLLQSNSKCEFESPRIEAREEGYGRHEGREAVARGNKHRERTKSSSCSSYYSLSSVGEYEEVQDKEEQIVEESVSGFTKDSSRSKEDSYKAQVVEEFNEVDGHGAAEQRSSAAGSCVKWDCRKKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQQLDNVEEESALAVNLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGKLRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDETLVQSSVQRTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLEENSRLQHSQKDHEHHQRIQPWKGSQDVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVVKPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVSSSHEKYSEESSSIQASLNLVSQARVPQINVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLAVQEVSSESGSSALHTHSGMRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARHEVSTSEMQKENIAETELLYGGEKQFKKNSGHYGSEDLHLKGREPRKSSESSGAKGPSDEMWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSSAATSDAKSPSNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQERTSTHSQGETSDKIKSKSKEQNPEADMPSSSTVIEGWSTSKRISRLSSSSAEKNLDQKAERSSSQSTSSGQEVLPLSSQLPAETLLTPPAVEAVSETSKTYASESGSMVQFAQPFNSRLIEALGSGNDGELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL
cccccccccHHHHHHHHcccccccccccccHHccccccccccccccccccccccccccccccEEEEccccEEEcccccccccccEEEEccEEcccccccccccccccEEEEEEEcccccccccccccHHHHHHHccccccccccccccccccccEEEEEEEcccccccEEEcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEccccccccccccccccccHHHcccccccccHHHHcccEEcccEEEEccccccccHHHHHHcccccccccccccccccccccccccccccEEEEEHHccccccccccccccccccccHHHccccccEEEccHHHccccEEcccccEEccccccccccEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccEEEcccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHccHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccc
cccccccccHHHHHHHHccccccccccccccEHccccccccccccHHcEcHcHHEcccHHHHHEEEccccEEEEccccccccccEEEEEEEEEEcccccccEEccccEEEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEcccEEEccccccccccccccccccccccEEccccccccccccEccccccccccHcccccccccccEEEcccccccccccccccccEccccccHHHcccccccEEEEccccccccEEEccccccccEEEEEEEcccccEEcccccccEcccEEcccEEccccEEEEEEEEEEccccccHHcccccccccEccccccccccEEEcccccccccEEEccccccccccccccEEEEccccccEEEEEEEEEcccccEEcccccEEEccccEEEEEEEEEEccccccccccEEccEEEEEEEEEcccccccHHHHcccccccHHHccccEEEEEcccccEccccEEEccEEEEEEEEEEEcEEEEEEEEEcccccccccEEccHHccccccHHcccccccccccccEEcccccccccEEEEEEEEccccEEEEccccccccEEEEcccccEEEcccccHccccccHHHHHEEEcccccccccccccEcccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccEccccccEEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHEEEEccccHHHHcccccEEccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHcccccccccccccEccccccccccccccccccccccccccccccccccccEcccccccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHEccccEEEEccccccccccccHHHHccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccEEEEcc
liksdsqgSNDALQHLlqlpkptkahfsnqvsaahnnrvpvntsylcglrqstliqrppykrlifgfkdrifsrlpvydldrgsyeVSCSirersgdegfgrrrNRRFRRMALEEtnerswlggvgDAEAVISFLSEevgdeclggterngRLAKRVEIVKNevhggelyrgrkkkvkaekrgnyggeyfrgrkknvgsnllqsnskcefesprieareegygrhegREAVARGnkhrertkssscssyyslssvgeyeevqdKEEQIVEESVsgftkdssrskedsYKAQVVEEfnevdghgaaeqrssaagscvkwdcrkKSEKKLTEVATEetkstkqssdihwridgttktdyekastshqqldnvEEESALAVNLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMhgnnvettsesqkqfsgreenvtrgklrqtdlvagnndlkRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDETLVQSSVQrtkgqhqqsseritgqidlriepeysselsethdtnikkssTIQSETRMKNLeensrlqhsqkdhehhqriqpwkgsqdvsRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVvkpmgatrdrhnqpdEKAMQSKLRKeaqkptgvssshekyseeSSSIQASLNLvsqarvpqinveedeeeerisqeilmppppqlltissghvasssgLAVQEVssesgssalhthsgmrtlslhsdsyvkggqdetydeplnlstCEDALGSAHRFAESSTQLVGEFVEKARHevstsemqkeniaetellyggekqfkknsghygsedlhlkgreprkssessgakgpsdemwhvtdsfvqpqaeameGNQAAGNAIVKRRGRSLWNIMADIVRLrwgshaetpssaatsdakspsndsvssgtwfsghesnkngdenmkregssppqdatpfhqlqqertsthsqgetsdKIKSkskeqnpeadmpssstviegwstskrisrlssssaeknldqkaersssqstssgqevlplssqlpaetlltppaveavSETSktyasesgsmvqFAQPFNSRLIEAlgsgndgelKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKaadtwevpVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLyvtlepcpmcaGAILQARVSTLvwgapnkllgadgswvrlfpdggekrdgsepsdkpagpvhpfhpkmtirrGVLAAECADIMHQFFQLRRRKKekiaddlpppscvpivnqQSKILTKMRHMFHMMFCL
liksdsqgsnDALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLrqstliqrppykRLIFGFKDRifsrlpvydldrgsyevscsirersgdegfgrrrnrrfrrmaleetnerswlggvgDAEAVISFLSEevgdeclggterngrlakrveivknevhggelyrgrkkkvkaekrgnyggeyfrgrkknvgsnllqsnskcefesprieareegygrhegreavargnkhrertkssscssyysLSSVGEYEEVQDKEEQIVEesvsgftkdssrskedsYKAQVVEEFNEvdghgaaeqrssaagscvkwdcrkksEKKLtevateetkstkqssdihwridGTTKTDYEKASTshqqldnveeeSALAVNLDKGTRKLYSqmdvqdtkqsrrQWQEVKTVeemhgnnvettsesqkqfsgreenvtrgklrqtdlvagnndlKRDFQQLTrtseilnanservsnlqrhsesrmkvqqkdetlvqssvqrtkgqhqqsseritgqidlRIEPEYsselsethdtnikksstiqseTRMKNLEENSRLQhsqkdhehhqriqpwkgsqdvSRVSVIQasemerrtdslrtsekgvnqasamtsvvkpmgatrdrhnqPDEKAMqsklrkeaqkptgvssshekySEESSSIQASLNLVSQARVPQINVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLAVQEVSSESGSSALHTHSGMRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARhevstsemqkeniaetelLYGGEKQFKKNSghygsedlhlkgreprkssessgakgpsdemWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSsaatsdakspsndsvSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQErtsthsqgetsdkikskskeqnpeadmpssstviegwstskrisrlssssaeknldqkaersssqstssgqevlPLSSQLPAETLLTPPAVEAVSETSKTYASESGSMVQFAQPFNSRLIEALGsgndgelkqrklqrnkqvskdrfdEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEkrdgsepsdkpagpvhpfhpKMTIRRGVLAAECADIMHQFFQLRRRKKEkiaddlpppscvpivnQQSKILTKMRHMFHMMFCL
LIKSDSQGSNDALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGDEgfgrrrnrrfrrMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYRGRKKKVKAEKRGNYGGEYFRGRKKNVGSNLLQSNSKCEFESPRIeareegygrhegreAVARGNKHRERTKssscssyyslssVGEYEEVQDKEEQIVEESVSGFTKDSSRSKEDSYKAQVVEEFNEVDGHGAAEQRSSAAGSCVKWDCRKKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQQLDNVEEESALAVNLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGKLRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDETLVQSSVQRTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLEENSRLQHSQKDHEHHQRIQPWKGSQDVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVVKPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVssshekyseesssIQASLNLVSQARVPQINVeedeeeeRISQEILMPPPPQLLTISSGHVASSSGLAVQEVSSESGSSALHTHSGMRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARHEVSTSEMQKENIAETELLYGGEKQFKKNSGHYGSEDLHLKGREPRKSSESSGAKGPSDEMWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSSAATSDAKSPSNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQERTSTHSQGETSDKIKSKSKEQNPEADMPSSSTVIEGWstskrisrlssssAEKNLDQKAERsssqstssGQEVLPLSSQLPAETLLTPPAVEAVSETSKTYASESGSMVQFAQPFNSRLIEALGSGNDGELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL
************************************NRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSI***************************RSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYR**************************************************************************************************************************************************W**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NAIVKRRGRSLWNIMADIVRLRWG*******************************************************************************************************************************************************************************************************************************IDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLF*************************KMTIRRGVLAAECADIMHQFFQLRRR************SCVPIVNQQSKILTKMRHMFHMMFC*
*************QHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEV***********************************GGVGDAEAVISFLSEEVG****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FAESSTQLVGEFVEK***************************************************************************************IVKRRGRSLWNIMADIVRLRW*********************************************************************************************************************************************************************************************************************************DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFF***************************KILTKMRHMFHMMFCL
**********DALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGDEGFGRRRNRRFRRMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYRGRKKKVKAEKRGNYGGEYFRGRKKNVGSNLLQSNSKCEFESPRIEARE**********************************************************************AQVVEEFNEVD***************VKWDCRKKS*******************DIHWRIDGTTK***************VEEESALAVNLDKGTRKLYSQ***************VKTVEEMHGN*********************GKLRQTDLVAGNNDLKRDFQQLTRTSEILNANSE****************************************ITGQIDLRIEPEY*********************TRMKNL*******************************SVIQASE******************SAMTSVVKPMGATRD***************************************ASLNLVSQARVPQI***********SQEILMPPPPQLLTISSG***************************MRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKA**********KENIAETELLYGGEKQFKKNSGHYGSEDLH********************EMWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSH************************WFSGHES*******************TPFHQ************************************VIEGWST***********************************PLSSQLPAETLLTPPAVE**************SMVQFAQPFNSRLIEALGSGNDGELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGG*************GPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL
******QGSNDALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGDEGFGRRRNRRFRRMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYRG**********************************************************************************VGEYEEVQDKEEQIVEESVSGFTKDSSRSKEDSYKAQVVEEFNEVDGHGAAEQRSSAAGSCVKWDCRKKSEKKLTEVATEETK***************************Q*LD**EEESALAVNLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGKLRQTDLVAGNNDLKRDFQQLTRTSEIL********************QQKDETLVQSSVQRTKGQHQQSSERITGQIDLRIEPEYSSELSETHDT********************************HQRIQPWKGSQDVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVVKPMG**************QSK*********************************QARVPQINVEEDE*************PP**LTISSGHVASSSGLAVQEVSSESGS*************************************************SSTQLVGEFVEKARHEVSTSEMQKENIAETEL*YGGE************************************************************NAIVKRRGRSLWNIMADIVRLRWG***********************************************************************************************************************************QEVLPLSSQLPAETLLTPPAV****************MVQFAQPFNSRLIEALGSGNDGELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDG**************GPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LIKSDSQGSNDALQHLLQLPKPTKAHFSNQVSAAHNNRVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGDEGFGRRRNRRFRRMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRVEIVKNEVHGGELYRGRKKKVKAEKRGNYGGEYFRGRKKNVGSNLLQSNSKCEFESPRIEAREEGYGRHEGREAVARGNKHRERTKSSSCSSYYSLSSVGEYEEVQDKEEQIVEESVSGFTKDSSRSKEDSYKAQVVEEFNEVDGHGAAEQRSSAAGSCVKWDCRKKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQQLDNVEEESALAVNLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGKLRQTDLVAGxxxxxxxxxxxxxxxxxxxxxSERVSNLQRHSESRMKVQQKDETLVQSSVQRTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLEENSRLQHSQKDHEHHQRIQPWKGSQDVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVVKPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVSSSHEKYSEESSSIQASLNLVSQARVPQINVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLAVQEVSSESGSSALHTHSGMRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARHEVSTSEMQKENIAETELLYGGEKQFKKNSGHYGSEDLHLKGREPRKSSESSGAKGPSDEMWHVTDSFVQPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSSAATSDAKSPSNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQERTSTHSQGETSDKIKSKSKEQNPEADMPSSSTVIEGWSTSKRISRLSSSSAEKNLDQKAERSSSQSTSSGQEVLPLSSQLPAETLLTPPAVEAVSETSKTYASESGSMVQFAQPFNSRLIEALGSGNDGELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1319 2.2.26 [Sep-21-2011]
Q9S7I01307 tRNA-specific adenosine d yes no 0.715 0.722 0.402 1e-165
P21335161 tRNA-specific adenosine d yes no 0.108 0.888 0.447 6e-27
P44931173 tRNA-specific adenosine d yes no 0.117 0.895 0.402 2e-25
P68397167 tRNA-specific adenosine d yes no 0.110 0.874 0.403 4e-25
P68398167 tRNA-specific adenosine d N/A no 0.110 0.874 0.403 4e-25
Q8FF24167 tRNA-specific adenosine d yes no 0.110 0.874 0.397 7e-25
Q8XA44167 tRNA-specific adenosine d N/A no 0.110 0.874 0.397 7e-25
Q7CQ08172 tRNA-specific adenosine d yes no 0.110 0.848 0.403 7e-25
Q8XGY4172 tRNA-specific adenosine d N/A no 0.110 0.848 0.403 7e-25
P0DA21171 tRNA-specific adenosine d yes no 0.115 0.888 0.391 7e-25
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1 Back     alignment and function desciption
 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 427/1062 (40%), Positives = 597/1062 (56%), Gaps = 118/1062 (11%)

Query: 322  KKSEKKLTEVATEETKSTKQSSDIHWRI---DGTTKTDYEKASTSHQQLDNVEEESALAV 378
            + SEKK+ + + +  KS K++S +H R    + +T  D    S   +Q+    E S  AV
Sbjct: 300  RSSEKKVVDQSAKRLKSRKEASQMHSRKKRDESSTGVD----SRYQKQIFEEGENSNQAV 355

Query: 379  NLDKGTRKLYSQMDVQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVTRGK 438
             L++  RK +SQ +     +S   ++E   + E+H N+ ET+S++QK F+ RE+     +
Sbjct: 356  TLNQRRRKKFSQTE-NRVSESTGNYEEDMEIHEVHVNDAETSSQNQKLFNEREDY----R 410

Query: 439  LRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDETLVQSSVQ 498
            +      +GN +++    QL    E   ++ +RVS ++R ++     Q++   ++Q+  +
Sbjct: 411  VHSIRNDSGNENIESSQHQLKERLETRYSSEDRVSEMRRRTKYSSS-QEEGINVLQNFPE 469

Query: 499  RTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLEEN----S 554
             T  Q     ERI+ Q   R   E+ SE SE HD +I+ +   Q E +++N E +    S
Sbjct: 470  VTNNQQPLVEERISKQAGTRRTTEHISESSEIHDIDIRNTYVSQREDQIRNQEVHAGLVS 529

Query: 555  RLQHSQKDHEHHQRIQPWKGSQ-DVSRVSVIQASEMERRTDSLRTSEKGVNQASAMTSVV 613
             LQ  +K  ++H    P + +Q D + VSV   S+  R T+  R SEK +    + T+V 
Sbjct: 530  GLQSERKQQDYHIEHNPLQTTQSDRTSVSVSHTSDAVRYTEIQRKSEKRLIGQGSTTAVQ 589

Query: 614  KPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVSSSHEKYSEESSSIQASLNLVSQARVPQ 673
                  ++   + D +   +  +K+ Q   G+ S   K SEE+SS Q+SL + S+ ++  
Sbjct: 590  SDSKVEKNGAQKEDSRLDHANSKKDGQTTLGLQSYQSKLSEEASSSQSSL-MASRTKLQL 648

Query: 674  INVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLAVQEVS---SESGSSALHTHSG 730
            +++    EE + S+  L+PP  QL++  SG    + G+++QE+S   SESG +    H  
Sbjct: 649  VDLVS--EEMQGSETTLIPPSSQLVSRRSGQSYRTGGVSIQEISHGTSESGYTTAFEHPR 706

Query: 731  MRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRFAESSTQLVGEFVEKARHEVST 790
                S++S S           E +  ++ EDA+GSAHR  ++S + VGEFV+KA+H V  
Sbjct: 707  A-GASVNSQSA---------GELMGFTSHEDAMGSAHRLEQASEKYVGEFVKKAKHGVIN 756

Query: 791  SEMQKENIAETELLYGGEKQFKKNSGHYGSEDLHLKGREPRKSSESSGAKGPSDEMWHVT 850
             E +++                       +E   LK R+ R+SS  SGAKGPSDEMW VT
Sbjct: 757  PETEEQR----------------------AESNQLKRRDSRRSSGGSGAKGPSDEMW-VT 793

Query: 851  DSFV-QPQAEAMEGNQAAGNAIVKRRGRSLWNIMADIVRLRWGSHAETPSSAATSDAKSP 909
            DS    P   A EGN A GNAI KR GRSLWN++ADI RLRWGS A +P S+A    +S 
Sbjct: 794  DSAQGTPHPGATEGNAAVGNAIFKRNGRSLWNVIADIARLRWGSRAGSPDSSAKPAGRSS 853

Query: 910  SNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATPFHQLQQERTSTHSQGETSDKIKS 969
             N+SVSS TWFSG E + + D+N K +    PQ+A   HQ++  +TS  SQ E     K 
Sbjct: 854  PNESVSSATWFSGREHDGSSDDNTKGD-KVLPQEAPSLHQVEVGQTSPRSQSEYPGTTKL 912

Query: 970  KSKEQNPEADMPS-SSTVIEGWSTSKRISRLSSSSAEKNLDQKAERSSSQSTSSGQEVLP 1028
            K + +  E  + S SST++EG S S R+S  S +      +++      +   +    +P
Sbjct: 913  KQRSERHEGVVSSPSSTILEGGSVSNRMSSTSGNQIVGVDEEEGGNFEFRLPETALTEVP 972

Query: 1029 LSSQLPAETLLTPPAVEAVSETSKTYASE------------------------------- 1057
            +  +LP+  L+  P ++  SE+S T AS                                
Sbjct: 973  M--KLPSRNLIRSPPIKESSESSLTEASSDQNFTVGEGRRYPRMDAGQNPLLFPGRNLRS 1030

Query: 1058 --------------SGS-----MVQFAQPFNSRLIEALGS-GNDGELKQRKLQRNKQVSK 1097
                          SGS      V+  QP +++  E  GS   D  L QRKLQRNKQV +
Sbjct: 1031 PAVMEPPVPRPRMVSGSSSLREQVEQQQPLSAKSQEETGSVSADSALIQRKLQRNKQVVR 1090

Query: 1098 DRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLV 1157
            D F+EWEEAYK+E+ ++ +D++FMREAL+EAKKAADTWEVPVGAVLV  GKIIARG NLV
Sbjct: 1091 DSFEEWEEAYKVEAERRTVDEIFMREALVEAKKAADTWEVPVGAVLVHDGKIIARGYNLV 1150

Query: 1158 EELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPN 1217
            EELRDSTAHAEMICIR  S  LR+WRLAD TLYVTLEPCPMCAGAILQARV+TLVWGAPN
Sbjct: 1151 EELRDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPN 1210

Query: 1218 KLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQ 1277
            KLLGADGSW+RLFP GGE  +GSE S+KP  PVHPFHPKMTIRRGVL +ECA  M QFFQ
Sbjct: 1211 KLLGADGSWIRLFP-GGEG-NGSEASEKPPPPVHPFHPKMTIRRGVLESECAQTMQQFFQ 1268

Query: 1278 LRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL 1319
            LRR+KK+K  +  PP       +   K+L KM H     FCL
Sbjct: 1269 LRRKKKDK--NSDPPTPTDHHHHHLPKLLNKM-HQVLPFFCL 1307
Deaminates adenosines to inosines in tRNA-Arg(ACG).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) GN=tadA PE=1 SV=1 Back     alignment and function description
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1 Back     alignment and function description
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3 SV=2 Back     alignment and function description
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12) GN=tadA PE=1 SV=2 Back     alignment and function description
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2 Back     alignment and function description
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7 GN=tadA PE=3 SV=2 Back     alignment and function description
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2 Back     alignment and function description
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3 SV=2 Back     alignment and function description
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1319
2241016251364 predicted protein [Populus trichocarpa] 0.940 0.909 0.490 0.0
3594727211342 PREDICTED: tRNA-specific adenosine deami 0.943 0.927 0.477 0.0
255546921 1624 conserved hypothetical protein [Ricinus 0.911 0.740 0.464 0.0
2977379071151 unnamed protein product [Vitis vinifera] 0.738 0.846 0.486 0.0
3565027021329 PREDICTED: tRNA-specific adenosine deami 0.906 0.899 0.389 0.0
4494352621264 PREDICTED: tRNA-specific adenosine deami 0.905 0.944 0.402 0.0
2978386391135 cytidine/deoxycytidylate deaminase famil 0.706 0.821 0.420 1e-167
264508411307 putative deaminase [Arabidopsis thaliana 0.715 0.722 0.403 1e-163
152214901307 tRNA-specific adenosine deaminase [Arabi 0.715 0.722 0.402 1e-163
2241117641071 predicted protein [Populus trichocarpa] 0.626 0.772 0.426 1e-158
>gi|224101625|ref|XP_002312358.1| predicted protein [Populus trichocarpa] gi|222852178|gb|EEE89725.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1334 (49%), Positives = 829/1334 (62%), Gaps = 93/1334 (6%)

Query: 38   RVPVNTSYLCGLRQSTLIQRPPYKRLIFGFKDRIFSRLPVYDLDRGSYEVSCSIRERSGD 97
            R P+N     G RQST+IQ PP +RLI G +DR + R P Y LD G YE SCS +E++G 
Sbjct: 72   RAPINPGLFFGFRQSTIIQCPPSRRLILGGRDRYYYRSPAYGLDHGCYEDSCSFKEKNGS 131

Query: 98   EGFGRRRNRRFRRMALEETNERSWLGGVGDAEAVISFLSEEVGDECLGGTERNGRLAKRV 157
            E   RRR      + L   +ER    GV D EAVIS LSEE+ +ECL   ERN  L+KRV
Sbjct: 132  ERVTRRRVGGSGGVRL---HERRCFSGVDDVEAVISLLSEEMSEECLRDGERNQGLSKRV 188

Query: 158  EIVKNEVHGGELYRGRKKKVKAEKRGNY-GGEYFRGRKKNVGSNLLQSNSKCEFESPRIE 216
                                  EKRGNY GG++   R+KNVG   L+S++KC+F    +E
Sbjct: 189  --------------------GTEKRGNYSGGDHKGRRRKNVGRRSLESDTKCKFGLANVE 228

Query: 217  AREEGYGRHEGRE------AVARGNKHRERTKSSSCSSYYSLSSVGEYE---EVQDKEEQ 267
             R+E + R EG E       V  G   R +  SSS SSYYSLSS  ++E   E QD+   
Sbjct: 229  LRKEEFTRKEGSEDREEKKTVLEGENCRGKRGSSSVSSYYSLSSAEDFESDTEAQDEHVD 288

Query: 268  IVEESVSGFTKDSSRSKEDSYKAQVVEEF------NEVDGHGAAEQRSSAAGSCVKWDCR 321
             ++ES  G+ +   RS E   K QVVEEF       E  G    E R+S+  + V+WD R
Sbjct: 289  CLKESSHGYKE--LRSGEGRLKGQVVEEFKRHRDGTEWKGE-VLEARTSSRRTGVEWDLR 345

Query: 322  KKSEKKLTEVATEETKSTKQSSDIHWRIDGTTKTDYEKASTSHQQLDNVEEESALAVNLD 381
            KKSEKKLTE+  EET+S ++S  +  R+  TT++DY+  S SH+Q+D+ EEE +LAVNL+
Sbjct: 346  KKSEKKLTEI--EETRSGRESLQMQSRMARTTESDYKNVSGSHKQIDD-EEEKSLAVNLE 402

Query: 382  KGTRKLYSQMD--VQDTKQSRRQWQEVKTVEEMHGNNVETTSESQKQFSGREENVT---- 435
            KGTRK Y QM   V++  + RR +QE+   +E  G NVETTS+SQK+FSGREEN+     
Sbjct: 403  KGTRKQYGQMGDPVKEQSEFRRNYQEITNKQESSGTNVETTSQSQKRFSGREENLVDVNL 462

Query: 436  ----RGKLRQTDLVAGNNDLKRDFQQLTRTSEILNANSERVSNLQRHSESRMKVQQKDET 491
                R +  +    A  N++KR+  QL  TS + N  +ERVSNLQ  SE RMK+ ++D  
Sbjct: 463  VWEGRDERYEVGETAAENNIKRNTHQLIDTSTLENVRTERVSNLQWQSEPRMKIMEEDRA 522

Query: 492  LVQSSVQRTKGQHQQSSERITGQIDLRIEPEYSSELSETHDTNIKKSSTIQSETRMKNLE 551
            L   S   T  Q  Q   +   Q+  R   + S ++ E HD++ K +  +QSETRMK  E
Sbjct: 523  L--GSFYETNEQQFQMGGQTRRQVQSRCLQQLS-KIPEVHDSSSKNTLLLQSETRMKKQE 579

Query: 552  ENSRLQHSQ----KDHEHH------QRIQPWKGSQDVSRVSV-------IQASEMERRTD 594
                +  S     K+H+        Q  +  KGS D++ +S+       + AS+++  T+
Sbjct: 580  GRESVVSSSGTEAKEHQPRTNQKALQGTETRKGSGDITNISLNVTGASLVHASDVKTVTN 639

Query: 595  SLRTSEKG-VNQASAMTSVVKPMGATRDRHNQPDEKAMQSKLRKEAQKPTGVSSSHEKYS 653
               TS K  V+Q S   S V+P+  TR+R ++ +E   Q K R E  +PT  S  +E+ S
Sbjct: 640  FGGTSGKRIVDQESESASAVEPIRETRERTDKIEENVTQFKSRNEVWRPTYESRHNERTS 699

Query: 654  EESS-SIQASLNLVSQARVPQINVEEDEEEERISQEILMPPPPQLLTISSGHVASSSGLA 712
            +E++   QAS N+VSQ  + +++V E  +  R SQ I+MPPPPQLL   +  V   S  A
Sbjct: 700  QEAALDSQASANMVSQVGIQEVDVGEGNQ--RTSQAIMMPPPPQLLARGTACVNPPSKNA 757

Query: 713  VQEVS---SESGSSALHTHSGMRTLSLHSDSYVKGGQDETYDEPLNLSTCEDALGSAHRF 769
             QE+S   SESG+SAL+  SG  T     ++Y K  +DE Y EP NL    DALGS HR 
Sbjct: 758  NQEISRGTSESGASALYIISGGGTPVFQQETYGKNEKDEIYREPSNLILTGDALGSTHRL 817

Query: 770  AESSTQLVGEFVEKARHEVSTSEMQKE-NIAETELLYGGEKQFKKNSGHYGSEDLHLKGR 828
             ESS Q VGEFVEKARHEV  SE+QKE  +++T+L Y  EKQ +K+SG Y SEDL  K +
Sbjct: 818  EESSMQFVGEFVEKARHEVLASEIQKEKTVSDTKLAYEAEKQRQKSSGQYDSEDLQFKRQ 877

Query: 829  EPRKSSESSGAKGPSDEMWHVTDSFVQ--PQAEAMEGNQAAGNAIVKRRGRSLWNIMADI 886
            + R+SS  S  KGPSDEMWHVTD  +Q   + EA  G+    + +V+R GRSLW+I++++
Sbjct: 878  DSRQSSRGSREKGPSDEMWHVTDPSIQEPTETEAPAGSTETESGVVRRTGRSLWSIISNV 937

Query: 887  VRLRWGSHAETPSSAATSDAKSPSNDSVSSGTWFSGHESNKNGDENMKREGSSPPQDATP 946
            V LRWGSHAETP SA  S  KS SNDSV+S  WFSGHE ++N DENMKRE  S P++A  
Sbjct: 938  VLLRWGSHAETPKSAWRSGGKSSSNDSVTSEAWFSGHEPDENSDENMKRERESMPKEAAS 997

Query: 947  FHQLQQERTSTHSQGETSDKIKSKSKEQNPEADMPSSSTVIEGWSTSKRISRLSSSSAEK 1006
             HQLQ   T +  Q + SD   SK+  +  E    S   +++  STSK IS   + S E+
Sbjct: 998  SHQLQPTNTFSQDQAKASDTFVSKNIIRQLEGYTSSRPIMLKSKSTSKGIS---TPSEEE 1054

Query: 1007 NLDQKAERSSSQSTSSGQEVLPLSSQLPAETLLTPPAVEAVSETSKTYASESGSMVQFAQ 1066
            NL    + +  Q  +S  EV      L   T  + P VE  S T+KT  S SGSM Q   
Sbjct: 1055 NLGWSQDGNDFQVATSSTEVDESLLVLLPSTSTSDPIVEESSGTAKTNVSVSGSMEQLDS 1114

Query: 1067 PFNSRLIEALGSGNDG-ELKQRKLQRNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREAL 1125
                 LI   GS   G E KQR+LQRNKQV +DRFDEWEEAY  ES  +K D+MFMREAL
Sbjct: 1115 EM---LIGVSGSEGKGVESKQRRLQRNKQVERDRFDEWEEAYLRESELRKTDEMFMREAL 1171

Query: 1126 LEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLA 1185
            LEAKKAAD+WEVPVGAVLV HG+IIARG NLVEELRDSTAHAEMICIR ASN LRTWRL+
Sbjct: 1172 LEAKKAADSWEVPVGAVLVHHGRIIARGHNLVEELRDSTAHAEMICIREASNKLRTWRLS 1231

Query: 1186 DATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDK 1245
            + TLY+TLEPCPMCAGAILQAR+ TLVWGAPNKLLGADGSW+RLFPD GE+ +GSE S+K
Sbjct: 1232 ETTLYITLEPCPMCAGAILQARIKTLVWGAPNKLLGADGSWIRLFPDAGEE-NGSELSNK 1290

Query: 1246 PAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKI 1305
            PA PVHPFH KMTIRRG+L +ECAD+M QFFQLRRRKKEK  D  P PSC+PI N Q KI
Sbjct: 1291 PAAPVHPFHRKMTIRRGILESECADVMQQFFQLRRRKKEKKEDSPPQPSCLPITNPQLKI 1350

Query: 1306 LTKMRHMFHMMFCL 1319
            L KM   FH MFCL
Sbjct: 1351 LGKMHGFFHAMFCL 1364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472721|ref|XP_002277950.2| PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546921|ref|XP_002514518.1| conserved hypothetical protein [Ricinus communis] gi|223546122|gb|EEF47624.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297737907|emb|CBI27108.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502702|ref|XP_003520156.1| PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449435262|ref|XP_004135414.1| PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297838639|ref|XP_002887201.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333042|gb|EFH63460.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26450841|dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana] gi|38564244|gb|AAR23701.1| At1g68720 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15221490|ref|NP_177039.1| tRNA-specific adenosine deaminase [Arabidopsis thaliana] gi|75336834|sp|Q9S7I0.1|TADA_ARATH RecName: Full=tRNA-specific adenosine deaminase, chloroplastic; Short=TADA; Flags: Precursor gi|5734706|gb|AAD49971.1|AC008075_4 Contains similarity to gi|3329316 cytosine deaminase from Chlamydia trachomatis genome gb|AE001357 and contains a PF|00383 cytidine deaminase zinc-binding region. EST gb|W43306 comes from this gene [Arabidopsis thaliana] gi|12324145|gb|AAG52046.1|AC011914_16 unknown protein; 92941-88668 [Arabidopsis thaliana] gi|332196710|gb|AEE34831.1| tRNA-specific adenosine deaminase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224111764|ref|XP_002315970.1| predicted protein [Populus trichocarpa] gi|222865010|gb|EEF02141.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1319
TAIR|locus:20124081307 TADA "tRNA arginine adenosine 0.213 0.214 0.636 8.9e-132
TIGR_CMR|CHY_2682153 CHY_2682 "cytidine/deoxycytidy 0.079 0.686 0.6 1.4e-29
UNIPROTKB|Q9KTN7193 VC_0864 "YfhC protein" [Vibrio 0.090 0.616 0.540 7.4e-28
TIGR_CMR|VC_0864193 VC_0864 "zinc-binding domain p 0.090 0.616 0.540 7.4e-28
UNIPROTKB|Q8EC53157 tadA "tRNA-specific adenosine 0.082 0.694 0.513 3.4e-27
TIGR_CMR|SO_3291157 SO_3291 "cytidine/deoxycytidyl 0.082 0.694 0.513 3.4e-27
UNIPROTKB|Q97TC0155 SP_0020 "Cytidine/deoxycytidyl 0.087 0.741 0.478 6.1e-26
UNIPROTKB|P68398167 tadA "tRNA-specific adenosine 0.081 0.646 0.5 1.6e-25
UNIPROTKB|Q81W19166 BAS0020 "Cytidine/deoxycytidyl 0.087 0.698 0.508 2e-25
TIGR_CMR|BA_0018166 BA_0018 "cytidine/deoxycytidyl 0.087 0.698 0.508 2e-25
TAIR|locus:2012408 TADA "tRNA arginine adenosine deaminase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 895 (320.1 bits), Expect = 8.9e-132, Sum P(2) = 8.9e-132
 Identities = 184/289 (63%), Positives = 214/289 (74%)

Query:  1034 PAETLLTPPAVEAVSETSKTYASESG--SMVQFAQPFNSRLIEALGSGN-DGELKQRKLQ 1090
             P   L +P  +E      +  +  S     V+  QP +++  E  GS + D  L QRKLQ
Sbjct:  1024 PGRNLRSPAVMEPPVPRPRMVSGSSSLREQVEQQQPLSAKSQEETGSVSADSALIQRKLQ 1083

Query:  1091 RNKQVSKDRFDEWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKII 1150
             RNKQV +D F+EWEEAYK+E+ ++ +D++FMREAL+EAKKAADTWEVPVGAVLV  GKII
Sbjct:  1084 RNKQVVRDSFEEWEEAYKVEAERRTVDEIFMREALVEAKKAADTWEVPVGAVLVHDGKII 1143

Query:  1151 ARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVST 1210
             ARG NLVEELRDSTAHAEMICIR  S  LR+WRLAD TLYVTLEPCPMCAGAILQARV+T
Sbjct:  1144 ARGYNLVEELRDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPCPMCAGAILQARVNT 1203

Query:  1211 LVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECAD 1270
             LVWGAPNKLLGADGSW+RLFP GGE  +GSE S+KP  PVHPFHPKMTIRRGVL +ECA 
Sbjct:  1204 LVWGAPNKLLGADGSWIRLFP-GGEG-NGSEASEKPPPPVHPFHPKMTIRRGVLESECAQ 1261

Query:  1271 IMHQFFQLRRRKKEKIADDLPPPSCVPIVNQQSKILTKMRHMFHMMFCL 1319
              M QFFQLRR+KK+K +D  PP       +   K+L KM H     FCL
Sbjct:  1262 TMQQFFQLRRKKKDKNSD--PPTPTDHHHHHLPKLLNKM-HQVLPFFCL 1307
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0016787 "hydrolase activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0002100 "tRNA wobble adenosine to inosine editing" evidence=IMP;IDA
GO:0008251 "tRNA-specific adenosine deaminase activity" evidence=IMP;IDA
GO:0009507 "chloroplast" evidence=IDA
TIGR_CMR|CHY_2682 CHY_2682 "cytidine/deoxycytidylate deaminase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KTN7 VC_0864 "YfhC protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0864 VC_0864 "zinc-binding domain protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EC53 tadA "tRNA-specific adenosine deaminase TadA" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3291 SO_3291 "cytidine/deoxycytidylate deaminase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q97TC0 SP_0020 "Cytidine/deoxycytidylate deaminase family protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
UNIPROTKB|P68398 tadA "tRNA-specific adenosine deaminase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q81W19 BAS0020 "Cytidine/deoxycytidylate deaminase zinc-binding domain protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0018 BA_0018 "cytidine/deoxycytidylate deaminase zinc-binding domain protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.1LOW CONFIDENCE prediction!
3rd Layer3.5.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1319
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 9e-51
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 3e-48
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 2e-37
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 8e-34
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 3e-16
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 3e-16
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 5e-15
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 5e-13
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 1e-12
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 5e-11
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 2e-07
PLN02807 380 PLN02807, PLN02807, diaminohydroxyphosphoribosylam 9e-07
PRK10786 367 PRK10786, ribD, bifunctional diaminohydroxyphospho 3e-06
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 1e-04
cd01283112 cd01283, cytidine_deaminase, Cytidine deaminase zi 5e-04
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  175 bits (446), Expect = 9e-51
 Identities = 77/162 (47%), Positives = 98/162 (60%), Gaps = 19/162 (11%)

Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLV-QHGKIIARGCNLVEELRDSTAHAEMICIRAA 1175
            D+ FMREAL EAKKA D  EVPVGAV+V   G+IIARG N  EE  D TAHAE++ IRAA
Sbjct: 8    DEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAA 67

Query: 1176 SNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGE 1235
            +  L  +RL D TLYVTLEPCPMCAGAI+ AR+  +V+GA +   GA GS + +  D   
Sbjct: 68   AETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKD--- 124

Query: 1236 KRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQ 1277
                           H       +  G+L  EC+ ++ +FF+
Sbjct: 125  -----------PRLNHRV----EVYGGILEEECSALLSEFFR 151

Length = 152
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|238610 cd01283, cytidine_deaminase, Cytidine deaminase zinc-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1319
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.98
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.97
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.97
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.94
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.93
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.93
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 99.92
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.91
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.91
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.91
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.9
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.88
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.86
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.83
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.65
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.48
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 99.3
PF14439136 Bd3614-deam: Bd3614-like deaminase 98.6
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 98.49
PRK06848139 hypothetical protein; Validated 97.42
PRK12411132 cytidine deaminase; Provisional 96.88
PRK05578131 cytidine deaminase; Validated 96.82
PRK08298136 cytidine deaminase; Validated 96.66
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 96.47
PLN02402303 cytidine deaminase 96.27
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 96.16
PRK09027295 cytidine deaminase; Provisional 95.04
PRK09027295 cytidine deaminase; Provisional 94.96
PLN02182339 cytidine deaminase 94.41
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 93.92
PF14437146 MafB19-deam: MafB19-like deaminase 91.59
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 89.83
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-35  Score=299.88  Aligned_cols=151  Identities=46%  Similarity=0.768  Sum_probs=139.1

Q ss_pred             chHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeC
Q 048747         1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTL 1193 (1319)
Q Consensus      1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTL 1193 (1319)
                      ..+|++||++|+++|+++...++.|||||||++|+||+.|+|.+...+||+.||||+||++|+++++.+.+.|||||+|+
T Consensus        10 ~~~~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~Tl   89 (172)
T PRK10860         10 EFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTL   89 (172)
T ss_pred             cccHHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeC
Confidence            34578999999999999998889999999999999999999998888999999999999999999988999999999999


Q ss_pred             CCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHH
Q 048747         1194 EPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMH 1273 (1319)
Q Consensus      1194 EPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq 1273 (1319)
                      |||+||++||+|+||++|||+.+++..|+.|+++.++...+                  ++|+++|+.|++++||.+||+
T Consensus        90 EPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~------------------~~~~i~v~~gv~~~e~~~ll~  151 (172)
T PRK10860         90 EPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPG------------------MNHRVEITEGVLADECAALLS  151 (172)
T ss_pred             CCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhccc------------------CCCCCEEEeCccHHHHHHHHH
Confidence            99999999999999999999999999999998888877555                  367789999999999999999


Q ss_pred             HHHHHHHcc
Q 048747         1274 QFFQLRRRK 1282 (1319)
Q Consensus      1274 ~FFk~rRkK 1282 (1319)
                      .||..++..
T Consensus       152 ~ff~~~~~~  160 (172)
T PRK10860        152 DFFRMRRQE  160 (172)
T ss_pred             HHHHHHhhc
Confidence            999986643

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1319
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 2e-27
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 2e-26
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 2e-26
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 2e-26
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 2e-22
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 4e-20
1wkq_A164 Crystal Structure Of Bacillus Subtilis Guanine Deam 2e-14
1tiy_A164 X-Ray Structure Of Guanine Deaminase From Bacillus 2e-13
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 3e-13
1ysb_A161 Yeast Cytosine Deaminase Triple Mutant Length = 161 3e-06
2o3k_A161 Yeast Cytosine Deaminase D92e Triple Mutant Bound T 3e-06
1ysd_A161 Yeast Cytosine Deaminase Double Mutant Length = 161 3e-06
1uaq_A158 The Crystal Structure Of Yeast Cytosine Deaminase L 1e-05
1p6o_A161 The Crystal Structure Of Yeast Cytosine Deaminase B 2e-05
2g84_A197 Cytidine And Deoxycytidylate Deaminase Zinc-Binding 3e-04
2hxv_A 360 Crystal Structure Of A Diaminohydroxyphosphoribosyl 4e-04
1ox7_A161 Crystal Structure Of Yeast Cytosine Deaminase Apo-E 5e-04
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure 
Iteration: 1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 19/171 (11%)
Query: 1120 FMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVL 1179
            FM+EAL E++K+    E+P+G V+V+ G+II RG N  EE   +  HAEM+ I  A+   
Sbjct: 19   FMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78
Query: 1180 RTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDG 1239
              WRL D TL+VT+EPC MC+GAI  AR+  +++GA N+  G   S  ++  D       
Sbjct: 79   GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTD------- 131
Query: 1240 SEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRKKEKIADDL 1290
                          + ++ + RG+LAA+CA+IM  FF+ + R+++KIA  L
Sbjct: 132  -----------ERLNHRVQVERGLLAADCANIMQTFFR-QGRERKKIAKHL 170
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase. The First Domain-Swapped Structure In The Cytidine Deaminase Superfamily Length = 164 Back     alignment and structure
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr160 Length = 164 Back     alignment and structure
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure
>pdb|1YSB|A Chain A, Yeast Cytosine Deaminase Triple Mutant Length = 161 Back     alignment and structure
>pdb|2O3K|A Chain A, Yeast Cytosine Deaminase D92e Triple Mutant Bound To Transition State Analogue Hpy Length = 161 Back     alignment and structure
>pdb|1YSD|A Chain A, Yeast Cytosine Deaminase Double Mutant Length = 161 Back     alignment and structure
>pdb|1UAQ|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Length = 158 Back     alignment and structure
>pdb|1P6O|A Chain A, The Crystal Structure Of Yeast Cytosine Deaminase Bound To 4(R)-Hydroxyl-3,4-Dihydropyrimidine At 1.14 Angstroms. Length = 161 Back     alignment and structure
>pdb|2G84|A Chain A, Cytidine And Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. Length = 197 Back     alignment and structure
>pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 Back     alignment and structure
>pdb|1OX7|A Chain A, Crystal Structure Of Yeast Cytosine Deaminase Apo-Enzyme: Inorganic Zinc Bound Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1319
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 1e-75
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 1e-71
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 9e-71
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 4e-70
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 6e-69
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 2e-67
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 6e-62
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 1e-56
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 1e-52
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 1e-18
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 6e-18
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 5e-16
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 2e-14
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 6e-09
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
 Score =  246 bits (631), Expect = 1e-75
 Identities = 65/182 (35%), Positives = 102/182 (56%), Gaps = 19/182 (10%)

Query: 1102 EWEEAYKLESAQQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELR 1161
            E  E++ +  + ++    FM+EAL E++K+    E+P+G V+V+ G+II RG N  EE  
Sbjct: 2    ELGESFLMPYSLEE-QTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESN 60

Query: 1162 DSTAHAEMICIRAASNVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLG 1221
             +  HAEM+ I  A+     WRL D TL+VT+EPC MC+GAI  AR+  +++GA N+  G
Sbjct: 61   QAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFG 120

Query: 1222 ADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRR 1281
               S  ++  D                     + ++ + RG+LAA+CA+IM  FF+  R 
Sbjct: 121  GVDSLYQILTDER------------------LNHRVQVERGLLAADCANIMQTFFRQGRE 162

Query: 1282 KK 1283
            +K
Sbjct: 163  RK 164
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1319
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.98
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.97
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.97
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.97
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.94
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.93
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.92
3g8q_A278 Predicted RNA-binding protein, contains thump doma 99.79
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.65
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.33
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.13
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.11
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 98.67
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 98.42
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 98.28
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 98.2
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 97.8
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 97.71
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 97.68
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 96.89
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 96.24
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 95.08
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 93.39
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 87.98
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 83.3
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
Probab=100.00  E-value=2.4e-36  Score=308.59  Aligned_cols=154  Identities=41%  Similarity=0.737  Sum_probs=142.9

Q ss_pred             CchHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEe
Q 048747         1113 QQKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVT 1192 (1319)
Q Consensus      1113 q~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVT 1192 (1319)
                      ...+|+.||++|+.+|+++...++.|||||||++|+||+.|+|.+....+|+.||||+||++|++.++.+.+.+||||||
T Consensus        12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT   91 (179)
T 2nx8_A           12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT   91 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence            34689999999999999998778999999999999999999999888899999999999999999999999999999999


Q ss_pred             CCCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHH
Q 048747         1193 LEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIM 1272 (1319)
Q Consensus      1193 LEPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLL 1272 (1319)
                      +|||+||++||+|+||+||||+..+|..|+.|+++.++...+                  +||+++|+.|+|++||.+||
T Consensus        92 lEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~------------------~~~~~~V~~gvl~~e~~~l~  153 (179)
T 2nx8_A           92 IEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDER------------------LNHRVQVERGLLAADCANIM  153 (179)
T ss_dssp             ECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTT------------------TTCCCEEEECTTHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccc------------------cCCCcEEEcCCCHHHHHHHH
Confidence            999999999999999999999999999999998888876544                  57889999999999999999


Q ss_pred             HHHHHHHHcccc
Q 048747         1273 HQFFQLRRRKKE 1284 (1319)
Q Consensus      1273 q~FFk~rRkKkp 1284 (1319)
                      +.||.++|.+++
T Consensus       154 ~~f~~~~r~~~~  165 (179)
T 2nx8_A          154 QTFFRQGRERKK  165 (179)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc
Confidence            999999887665
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1319
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 1e-34
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 1e-31
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 4e-30
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 6e-29
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 8e-28
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 8e-26
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 3e-25
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 5e-21
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 6e-16
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 1e-15
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

 Score =  127 bits (320), Expect = 1e-34
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 19/166 (11%)

Query: 1117 DDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAAS 1176
             + F++ AL EAK+A +  EVPVGA++V+ G+II++  N VEEL+D TAHAEM+ I+ A 
Sbjct: 3    KEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEAC 62

Query: 1177 NVLRTWRLADATLYVTLEPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEK 1236
              L T  L    LYVTLEPC MC+ A++ +R+  +++ A +K  G   S   +  +    
Sbjct: 63   RRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPT-- 120

Query: 1237 RDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMHQFFQLRRRK 1282
                             + ++      L  E ++++ +FF+  R  
Sbjct: 121  ----------------LNHRVKWEYYPL-EEASELLSEFFKKLRNN 149
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1319
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.97
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 99.97
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 99.97
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 99.97
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 99.97
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.91
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 97.36
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 97.34
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 97.21
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 96.75
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 96.61
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 96.6
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 96.6
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-37  Score=303.37  Aligned_cols=152  Identities=43%  Similarity=0.746  Sum_probs=141.6

Q ss_pred             chHHHHHHHHHHHHHHHccCCCCCCEEEEEEeCCeEEEEEEccCcccCCCCCcHHHHHHHHHHhHcCCccCCCcEEEEeC
Q 048747         1114 QKIDDMFMREALLEAKKAADTWEVPVGAVLVQHGKIIARGCNLVEELRDSTAHAEMICIRAASNVLRTWRLADATLYVTL 1193 (1319)
Q Consensus      1114 ~~~DE~FMrlAIelA~kS~~sGe~PVGAVIVddGKIIA~GyN~t~~~~dpt~HAEMnAIreAarkl~~ylLtG~TLYVTL 1193 (1319)
                      ...|+.||++|+.+|+++...++.|||||||+||+||+.|+|.+....+|+.|||++||.++...+..+.|.+++||+|+
T Consensus         4 ~~~~e~~M~~Ai~~A~~a~~~~~~pvGaViv~~g~Iia~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~~lytT~   83 (156)
T d1z3aa1           4 EFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTL   83 (156)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHhccCCCCCEEEEEEECCeEEEEeeccccccCcchhhHHHHhHHHHHhhcccccccCceeeecc
Confidence            35689999999999999988889999999999999999999998888999999999999999999999999999999999


Q ss_pred             CCcHhHHHHHHHcCcCeEEecCCCccCCcCcchhhccccCCCCCCCCCCCCCCCCCCCCCCCCceEEccccHHHHHHHHH
Q 048747         1194 EPCPMCAGAILQARVSTLVWGAPNKLLGADGSWVRLFPDGGEKRDGSEPSDKPAGPVHPFHPKMTIRRGVLAAECADIMH 1273 (1319)
Q Consensus      1194 EPCpMCAmAIVhSGIkRVVYGapdp~~Gg~GSgirLL~eaGI~~~~vel~~kp~~~~~~LNhkfeV~~GVLeeECadLLq 1273 (1319)
                      |||+||++||+|+||+|||||..+|..|+.|+++.+|...|+                  +|+++|+.|||++||..||+
T Consensus        84 ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~~~~~l~~~~~------------------~~~ieV~~gvl~ee~~~ll~  145 (156)
T d1z3aa1          84 EPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM------------------NHRVEITEGILADECAALLS  145 (156)
T ss_dssp             CCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTC------------------SSCCEEECCTTHHHHHHHHH
T ss_pred             ccccchhhHHHHhCCceEEEEeecCCCcccCcHHHHHHhCCC------------------CCCcEEEeCcCHHHHHHHHH
Confidence            999999999999999999999999999998888888876663                  67889999999999999999


Q ss_pred             HHHHHHHccc
Q 048747         1274 QFFQLRRRKK 1283 (1319)
Q Consensus      1274 ~FFk~rRkKk 1283 (1319)
                      .||+.+|+++
T Consensus       146 ~Ff~~~r~~~  155 (156)
T d1z3aa1         146 DFFRMRRQEI  155 (156)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCc
Confidence            9999877764
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure