Citrus Sinensis ID: 048754
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9W9 | 619 | Adagio protein 3 OS=Arabi | yes | no | 0.929 | 0.938 | 0.833 | 0.0 | |
| Q2R2W1 | 630 | Adagio-like protein 3 OS= | yes | no | 0.900 | 0.893 | 0.777 | 0.0 | |
| Q5Z8K3 | 630 | Adagio-like protein 1 OS= | no | no | 0.907 | 0.9 | 0.676 | 0.0 | |
| Q94BT6 | 609 | Adagio protein 1 OS=Arabi | no | no | 0.924 | 0.949 | 0.666 | 0.0 | |
| Q67UX0 | 635 | Putative adagio-like prot | no | no | 0.892 | 0.878 | 0.660 | 0.0 | |
| Q8W420 | 611 | Adagio protein 2 OS=Arabi | no | no | 0.921 | 0.942 | 0.620 | 0.0 | |
| Q9C8K7 | 478 | F-box/kelch-repeat protei | no | no | 0.576 | 0.753 | 0.274 | 2e-26 | |
| Q9ST27 | 907 | Phototropin-2 OS=Oryza sa | no | no | 0.161 | 0.111 | 0.472 | 4e-20 | |
| P93025 | 915 | Phototropin-2 OS=Arabidop | no | no | 0.168 | 0.114 | 0.438 | 5e-20 | |
| Q2QYY8 | 921 | Phototropin-1A OS=Oryza s | no | no | 0.198 | 0.134 | 0.397 | 6e-20 |
| >sp|Q9C9W9|ADO3_ARATH Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1027 bits (2656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/590 (83%), Positives = 537/590 (91%), Gaps = 9/590 (1%)
Query: 37 DDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96
+D +L L+ G+ +YP TP SF+V+DA +PDFP+IYVN+VFE+FTGYRADEVLGRNCRFLQ
Sbjct: 36 EDEKLPLEVGMFYYPMTPPSFIVSDALEPDFPLIYVNRVFEVFTGYRADEVLGRNCRFLQ 95
Query: 97 YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGT 156
YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNF+KDGTPLVNRLRLAPIRDDDGT
Sbjct: 96 YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIRDDDGT 155
Query: 157 VTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPL--SQHQDICGILQ 214
+TH+IGIQ+FSE IDL+ VSYPVFK QQ DQ+++ SP H+D CGILQ
Sbjct: 156 ITHVIGIQVFSETTIDLDRVSYPVFKHK--QQLDQTSECLFPSGSPRFKEHHEDFCGILQ 213
Query: 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTK 274
LSDEVLAHNILSRLTPRDVASIGS CRR+RQLTKNE VRKMVCQNAWG+E+TG LE+MTK
Sbjct: 214 LSDEVLAHNILSRLTPRDVASIGSACRRLRQLTKNESVRKMVCQNAWGKEITGTLEIMTK 273
Query: 275 KLGWGRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDT 334
KL WGRLARELTTLEAVCWRKFTV G V+PSRCNFSACA GNRLVLFGGEGVNMQP+DDT
Sbjct: 274 KLRWGRLARELTTLEAVCWRKFTVGGIVQPSRCNFSACAVGNRLVLFGGEGVNMQPLDDT 333
Query: 335 FVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394
FVLNLDA PEW+RV V SSPPGRWGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDAK
Sbjct: 334 FVLNLDAECPEWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 393
Query: 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454
PTW EV+GG PPLPRSWHSSC IEGSKLVVSGGCTDAGVLLSDT+LLDLTTDKP W+EI
Sbjct: 394 HPTWKEVAGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTFLLDLTTDKPTWKEI 453
Query: 455 PTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNA 514
PTSW+PPSRLGHSLSV+GRTK+LMFGGLA SGHL+LRSGE+YTIDL DEEP+W++LEC+A
Sbjct: 454 PTSWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKLRSGEAYTIDLEDEEPRWRELECSA 513
Query: 515 FTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574
F GV VVPPPRLDHVAVSMPCGR+IIFGGSIAGLHSPSQLFL+DP+EEKPSWRILN
Sbjct: 514 FPGV-----VVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLIDPAEEKPSWRILN 568
Query: 575 VPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
VPG+PPK AWGHSTCVVGGTRVLVLGGHTGEEW+LNELHELCLAS+QDSD
Sbjct: 569 VPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSD 618
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Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0547000 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/570 (77%), Positives = 495/570 (86%), Gaps = 7/570 (1%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
VV+DA + DFP+IYVN FE TGYRADEVLGRNCRFLQ+RDPRAQRRHPLVDP+VVSE
Sbjct: 67 IVVSDAVEVDFPVIYVNAAFEAATGYRADEVLGRNCRFLQFRDPRAQRRHPLVDPMVVSE 126
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176
IRRCL EGIEFQGELLNF+KDG PL NRLRL P+ DDG VTH+IGIQ+FSEA IDL++V
Sbjct: 127 IRRCLNEGIEFQGELLNFRKDGAPLYNRLRLIPMHGDDGFVTHVIGIQLFSEANIDLSNV 186
Query: 177 SYPVFKENCNQQYD-QSAQYFSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVAS 235
SYPV+K+ N + + Q S H P Q + C ILQLSDEVLAHNILSRL+PRDVAS
Sbjct: 187 SYPVYKQQSNHRPNIQEINPASHEHIPKIQSSEYCCILQLSDEVLAHNILSRLSPRDVAS 246
Query: 236 IGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCWRK 295
IGSVC R+ +LTKN+H+RKMVCQNAWGR+VT LE+ TK LGWGRLARELTTLEA WRK
Sbjct: 247 IGSVCTRMHELTKNDHLRKMVCQNAWGRDVTVRLEMSTKMLGWGRLARELTTLEAASWRK 306
Query: 296 FTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP 355
FTV G VEPSRCNFSACA GNRLVLFGGEGVNMQPMDDTFVLNL++A PEWRRV V +SP
Sbjct: 307 FTVGGRVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLESAKPEWRRVKVSASP 366
Query: 356 PGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSS 415
PGRWGHTLS LNGSWLVVFGGCG+QGLLNDVFVLDLDAKQPTW EV+ PPLPRSWHSS
Sbjct: 367 PGRWGHTLSWLNGSWLVVFGGCGQQGLLNDVFVLDLDAKQPTWREVASEGPPLPRSWHSS 426
Query: 416 CIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475
C ++GSKLVVSGGCT++GVLLSDT+LLDLT +KP W+EIPTSWSPPSRLGH+LSV+G+TK
Sbjct: 427 CTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTSWSPPSRLGHTLSVFGKTK 486
Query: 476 VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535
+ MFGGLAKSG LRLRS ++YT+D G++ PQW+QL F +G PPPRLDHVAV
Sbjct: 487 LFMFGGLAKSGSLRLRSCDAYTMDAGEDSPQWRQLATTGFPSIG------PPPRLDHVAV 540
Query: 536 SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTR 595
S+PCGRIIIFGGSIAGLHSPSQLFLLDP+EEKP+WRILNVPGQPPKFAWGHSTCVVGGTR
Sbjct: 541 SLPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGQPPKFAWGHSTCVVGGTR 600
Query: 596 VLVLGGHTGEEWVLNELHELCLASKQDSDQ 625
VLVLGGHTGEEW+LNELHELCLAS+ D D+
Sbjct: 601 VLVLGGHTGEEWILNELHELCLASRPDEDE 630
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Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/572 (67%), Positives = 461/572 (80%), Gaps = 5/572 (0%)
Query: 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVV 113
P VV DA +PD PIIYVN FE TGYRA+EVLGRNCRFLQ R P AQRRHPLVD +V
Sbjct: 57 PCGLVVTDALEPDCPIIYVNCGFEEATGYRAEEVLGRNCRFLQCRGPFAQRRHPLVDAMV 116
Query: 114 VSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173
VSEIR+C++ G EF+G+LLNF+KDG+PL+N+L L PI DD T+TH +GIQ F+ A +DL
Sbjct: 117 VSEIRKCIDNGTEFRGDLLNFRKDGSPLMNKLHLTPIYGDDETITHYMGIQFFTNANVDL 176
Query: 174 NHVSYPVFKENCNQQYDQSAQYF---SGGHSPLSQHQDICGILQLSDEVLAHNILSRLTP 230
+ + KE +F S G + ++ + QL+DEVL +ILSRL+P
Sbjct: 177 GPLPGSLTKEPVRSTRFTPDNFFRPISTGPGQSNFCREYSSLFQLTDEVLCQSILSRLSP 236
Query: 231 RDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELM--TKKLGWGRLARELTTL 288
RD+AS+ SVCRR+ LT+NE + +MVCQNAWG E T ALE + K+LGWGRLARELTTL
Sbjct: 237 RDIASVSSVCRRLYLLTRNEDLWRMVCQNAWGSETTRALETVPAAKRLGWGRLARELTTL 296
Query: 289 EAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRR 348
EAV WRK TV GAVEPSRCNFSACA GNR+VLFGGEGVNMQPM+DTFVL+L+A+NPEWR
Sbjct: 297 EAVAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNASNPEWRH 356
Query: 349 VSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL 408
V+V S+PPGRWGHTLS LNGS LVVFGGCGRQGLLNDVF LDLDAKQPTW E+ G APP+
Sbjct: 357 VNVSSAPPGRWGHTLSCLNGSLLVVFGGCGRQGLLNDVFTLDLDAKQPTWREIPGVAPPV 416
Query: 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468
PRSWHSSC ++G+KLVVSGGC D+GVLLSDTYLLD+T DKP+WRE+P SW+PPSRLGHS+
Sbjct: 417 PRSWHSSCTLDGTKLVVSGGCADSGVLLSDTYLLDVTMDKPVWREVPASWTPPSRLGHSM 476
Query: 469 SVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528
SVYG K+LMFGGLAKSG LRLRS + +T+DL +EEP W+ L + G G+ + PPP
Sbjct: 477 SVYGGRKILMFGGLAKSGPLRLRSSDVFTMDLSEEEPCWRCLTGSGMPGAGNPAGAGPPP 536
Query: 529 RLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHST 588
RLDHVAVS+P GR++IFGGS+AGLHS SQL+LLDP+EEKP+WRILNVPG+PP+FAWGHST
Sbjct: 537 RLDHVAVSLPGGRVLIFGGSVAGLHSASQLYLLDPTEEKPTWRILNVPGRPPRFAWGHST 596
Query: 589 CVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620
CVVGGT+ +VLGG TGEEW+L E+HEL LAS
Sbjct: 597 CVVGGTKAIVLGGQTGEEWMLTEIHELSLASS 628
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Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q94BT6|ADO1_ARATH Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/593 (66%), Positives = 471/593 (79%), Gaps = 15/593 (2%)
Query: 37 DDTELSLKPG--LLFYP------TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVL 88
DD E L PG + YP T P FVV DA +PD PIIYVN VFE+ TGYRA+EVL
Sbjct: 19 DDEEGGLFPGGGPIPYPVGNLLHTAPCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVL 78
Query: 89 GRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLA 148
G NCRFLQ R P A+RRHPLVD +VVSEIR+C++EGIEFQGELLNF+KDG+PL+NRLRL
Sbjct: 79 GGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFRKDGSPLMNRLRLT 138
Query: 149 PIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQD 208
PI DD T+THIIGIQ F E IDL V KE + D + G +S+
Sbjct: 139 PIYGDDDTITHIIGIQFFIETDIDLGPVLGSSTKE---KSIDGIYSALAAGERNVSR--G 193
Query: 209 ICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGA 268
+CG+ QLSDEV++ ILSRLTPRDVAS+ SVCRR+ LTKNE + + VCQNAWG E T
Sbjct: 194 MCGLFQLSDEVVSMKILSRLTPRDVASVSSVCRRLYVLTKNEDLWRRVCQNAWGSETTRV 253
Query: 269 LELM--TKKLGWGRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGV 326
LE + K+LGWGRLARELTTLEA WRK +V G+VEPSRCNFSACA GNR+VLFGGEGV
Sbjct: 254 LETVPGAKRLGWGRLARELTTLEAAAWRKLSVGGSVEPSRCNFSACAVGNRVVLFGGEGV 313
Query: 327 NMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386
NMQPM+DTFVL+L++ PEW+ V V S PPGRWGHTL+ +NGS LVVFGGCG+QGLLNDV
Sbjct: 314 NMQPMNDTFVLDLNSDYPEWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQQGLLNDV 373
Query: 387 FVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446
FVL+LDAK PTW E+SG APPLPRSWHSSC ++G+KL+VSGGC D+GVLLSDT+LLDL+
Sbjct: 374 FVLNLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSI 433
Query: 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ 506
+KP+WREIP +W+PPSRLGH+LSVYG K+LMFGGLAKSG L+ RS + +T+DL +EEP
Sbjct: 434 EKPVWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLKFRSSDVFTMDLSEEEPC 493
Query: 507 WKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE 566
W+ + + G G+ V PPPRLDHVAV++P GRI+IFGGS+AGLHS SQL+LLDP+E+
Sbjct: 494 WRCVTGSGMPGAGNPGGVAPPPRLDHVAVNLPGGRILIFGGSVAGLHSASQLYLLDPTED 553
Query: 567 KPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619
KP+WRILN+PG+PP+FAWGH TCVVGGTR +VLGG TGEEW+L+ELHEL LAS
Sbjct: 554 KPTWRILNIPGRPPRFAWGHGTCVVGGTRAIVLGGQTGEEWMLSELHELSLAS 606
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Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO1) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/566 (66%), Positives = 455/566 (80%), Gaps = 8/566 (1%)
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
VV+DA +PDFPIIYVN+ FE TGYRA+EVLGRNCRFLQ R P A+RRHPLVD VV++
Sbjct: 56 LVVSDALEPDFPIIYVNRGFEDATGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDTTVVTD 115
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176
IRRCLEEG FQG+LLNF+KDG+P + +L+L PI DD T+TH +G+Q F+++ +DL +
Sbjct: 116 IRRCLEEGTVFQGDLLNFRKDGSPFMAKLQLTPIYGDDETITHYMGMQFFNDSNVDLGPL 175
Query: 177 SYPVFKENCNQQY---DQSAQYFSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDV 233
S KE D + + G S+H D+ LSDEVL ILSRL+PRD+
Sbjct: 176 SVSTTKEIVRSTLITPDNTIRPSPMGKGFCSEHSDL---FLLSDEVLCQKILSRLSPRDI 232
Query: 234 ASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELM--TKKLGWGRLARELTTLEAV 291
AS+ SVC+R+ LT+N+ + +MVCQNAWG E T LE + T+ L WGRLARELTTLEAV
Sbjct: 233 ASVNSVCKRLYHLTRNDDLWRMVCQNAWGSEATQVLETVAGTRSLAWGRLARELTTLEAV 292
Query: 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV 351
WRK TV GAVEPSRCNFSACAAGNR+VLFGGEGVNMQPM+DTFVL+L+A+ PEWR ++V
Sbjct: 293 TWRKLTVGGAVEPSRCNFSACAAGNRVVLFGGEGVNMQPMNDTFVLDLNASKPEWRHINV 352
Query: 352 KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411
+S+PPGRWGHTLS LNGS LV+FGGCGRQGLLNDVF+LDLDA+QPTW E+ G APP+PRS
Sbjct: 353 RSAPPGRWGHTLSCLNGSRLVLFGGCGRQGLLNDVFMLDLDAQQPTWREIPGLAPPVPRS 412
Query: 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471
WHSSC ++G+KLVVSGGC D+GVLLSDTYLLD+T ++P+WREIP SW+PP RLGHSLSVY
Sbjct: 413 WHSSCTLDGTKLVVSGGCADSGVLLSDTYLLDVTMERPVWREIPASWTPPCRLGHSLSVY 472
Query: 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLD 531
K+LMFGGLAKSG LRLRS + +T+DL + +P W+ + + G + + V PPPRLD
Sbjct: 473 DGRKILMFGGLAKSGPLRLRSNDVFTLDLSENKPCWRCITGSGMPGASNPAGVGPPPRLD 532
Query: 532 HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV 591
HVAVS+P GRI+IFGGS+AGLHS S+L+LLDP+EEKP+WRILNVPG+PP+FAWGHSTCVV
Sbjct: 533 HVAVSLPGGRILIFGGSVAGLHSASKLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVV 592
Query: 592 GGTRVLVLGGHTGEEWVLNELHELCL 617
GGT+ +VLGG TGEEW L ELHEL L
Sbjct: 593 GGTKAIVLGGQTGEEWTLTELHELSL 618
|
Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8W420|ADO2_ARATH Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/591 (62%), Positives = 460/591 (77%), Gaps = 15/591 (2%)
Query: 35 GGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRF 94
GGD+ + G L T P FVV+DA +PD PIIYVN VFEI TGYRA+EV+GRNCRF
Sbjct: 26 GGDNGAIPFPVGSL-PGTAPCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIGRNCRF 84
Query: 95 LQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDD 154
LQ R P +RRHP+VD +V+++R+CLE GIEFQGELLNF+KDG+PL+N+LRL PIR++D
Sbjct: 85 LQCRGPFTKRRHPMVDSTIVAKMRQCLENGIEFQGELLNFRKDGSPLMNKLRLVPIREED 144
Query: 155 GTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQH---QDICG 211
+TH IG+ +F++AKIDL + ++ + ++ F+ P+ + + +CG
Sbjct: 145 -EITHFIGVLLFTDAKIDLGPS-----PDLSAKEIPRISRSFTSAL-PIGERNVSRGLCG 197
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALEL 271
I +LSDEV+A ILS+LTP D+AS+G VCRR+ +LTKN+ V +MVCQN WG E T LE
Sbjct: 198 IFELSDEVIAIKILSQLTPGDIASVGCVCRRLNELTKNDDVWRMVCQNTWGTEATRVLES 257
Query: 272 M--TKKLGWGRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQ 329
+ K++GW RLARE TT EA WRKF+V G VEPSRCNFSACA GNR+V+FGGEGVNMQ
Sbjct: 258 VPGAKRIGWVRLAREFTTHEATAWRKFSVGGTVEPSRCNFSACAVGNRIVIFGGEGVNMQ 317
Query: 330 PMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVL 389
PM+DTFVL+L +++PEW+ V V S PPGRWGHTLS +NGS LVVFGG G GLLNDVF+L
Sbjct: 318 PMNDTFVLDLGSSSPEWKSVLVSSPPPGRWGHTLSCVNGSRLVVFGGYGSHGLLNDVFLL 377
Query: 390 DLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449
DLDA P+W EVSG APP+PRSWHSSC ++G+KL+VSGGC D+G LLSDT+LLDL+ D P
Sbjct: 378 DLDADPPSWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLDLSMDIP 437
Query: 450 MWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509
WREIP W+PPSRLGH+L+VYG K+LMFGGLAK+G LR RS + YT+DL ++EP W+
Sbjct: 438 AWREIPVPWTPPSRLGHTLTVYGDRKILMFGGLAKNGTLRFRSNDVYTMDLSEDEPSWRP 497
Query: 510 LECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569
+ + G +A PPPRLDHVA+S+P GRI+IFGGS+AGL S SQL+LLDP+EEKP+
Sbjct: 498 VIGYGSSLPGGMAA--PPPRLDHVAISLPGGRILIFGGSVAGLDSASQLYLLDPNEEKPA 555
Query: 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620
WRILNV G PP+FAWGH+TCVVGGTR++VLGG TGEEW+LNE HEL LA+
Sbjct: 556 WRILNVQGGPPRFAWGHTTCVVGGTRLVVLGGQTGEEWMLNEAHELLLATS 606
|
Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO2) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K7|FBK21_ARATH F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 190/405 (46%), Gaps = 45/405 (11%)
Query: 233 VASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLG--WGRLARELTTLEA 290
+ S C+R + L ++ + + +C+ WG AL+L + + G W + + + +++
Sbjct: 41 ILSFSMTCKRYKSLACSDSLWEALCEREWGPTSVDALKLSSLRDGFSWMLMFQRVYKMDS 100
Query: 291 VCWRKFTVRGAVEPS-------RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAAN 343
VC K + + R + S + LVLFGG + +DDT+ +D +N
Sbjct: 101 VCCHKISDPDDDDEESSSFPIPRASHSLNFVNDHLVLFGGGCQGGRHLDDTWTSYVDKSN 160
Query: 344 P---EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQP-TW 398
+W++V +P GR+GHT + G +L++FGG +G LND ++ + + +W
Sbjct: 161 QSILKWKKVK-SGTPSGRFGHTCIVI-GEYLLLFGGINDRGERLNDTWIGQVFCHEGLSW 218
Query: 399 IEVSGGA----PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD--KPMWR 452
++ G+ P PR HS+C I K+VV GG GV L DT++L+L+ D W
Sbjct: 219 KLLNVGSLQRPRPPPRGAHSACCIAEKKMVVHGGIGLNGVRLGDTWILELSEDFSSGTWH 278
Query: 453 EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDE-EPQWKQLE 511
+ + PP R GH+L+ +V++FGG + + + +D+ + E +W Q+
Sbjct: 279 MVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGYDVL---DDVWILDIQEPCEEKWIQIF 335
Query: 512 CNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLD-----PSEE 566
+ F V +++ PR+ H A + GRI+I+GG + H ++LD S
Sbjct: 336 YD-FQDVPEYASL---PRVGHSATLVLGGRILIYGGEDSYRHRKDDFWVLDVKTIPSSGL 391
Query: 567 KPS---------WRILNVPGQPPKFAWGHSTCVVGGTRVL-VLGG 601
KP W+ L+ PK H C R L V GG
Sbjct: 392 KPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCSGRFLYVFGG 436
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ST27|PHOT2_ORYSJ Phototropin-2 OS=Oryza sativa subsp. japonica GN=PHOT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 9/110 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA PD PIIY ++ F TGY EV+GRNCRFLQ P D V+
Sbjct: 103 TFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQ---------GPDTDAAEVA 153
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ G F G LLN++KDG P N L + PIRDD+G V IG+Q+
Sbjct: 154 KIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFIGMQV 203
|
Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA P PI+Y + F TGY + E++GRNCRFLQ P D
Sbjct: 130 TLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQ---------GPDTDK 180
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V++IR C++ G + G LLN+KKDGTP N L + PI+DD G IG+Q+
Sbjct: 181 NEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQV 234
|
Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for photo-induced movements. Mediates calcium spiking of extra- and intracellular origins in response to blue light. Involved in hypocotyl phototropism. Contributes to the chloroplast accumulation in low blue light and mediates their translocation (avoidance response) at high fluence. Regulates stomata opening and photomorphogenesis response of leaf tissue. Not involved in hypocotyl elongation inhibition, anthocyanin accumulation or cotyledon opening. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica GN=PHOT1A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 17/141 (12%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA P+ PI+Y + F TGY + EV+GRNCRFLQ DP +
Sbjct: 137 TFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG---------TDPHEID 187
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI----FSEAKI 171
+IR+ L G + G +LN+KKDGTP N L +API+D+DG + IG+Q+ ++E K
Sbjct: 188 KIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKK 247
Query: 172 DL----NHVSYPVFKENCNQQ 188
D N +S + K + Q+
Sbjct: 248 DTVVRPNGLSESLIKYDARQK 268
|
Protein kinase that acts as a blue-light photoreceptor in a signal-transduction pathway for phototropic responses. Regulates a wide range of physiological activities in plants that maximize the efficiency of photosynthesis, such as chloroplast relocations, stomata opening, and leaf expansion. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| 351727583 | 625 | circadian clock-associated FKF1 [Glycine | 0.980 | 0.980 | 0.860 | 0.0 | |
| 449449016 | 629 | PREDICTED: adagio protein 3-like [Cucumi | 0.982 | 0.976 | 0.849 | 0.0 | |
| 255584973 | 630 | Adagio protein, putative [Ricinus commun | 0.985 | 0.977 | 0.849 | 0.0 | |
| 356524615 | 632 | PREDICTED: adagio protein 3-like [Glycin | 0.987 | 0.976 | 0.830 | 0.0 | |
| 224108263 | 587 | predicted protein [Populus trichocarpa] | 0.926 | 0.986 | 0.887 | 0.0 | |
| 357521357 | 635 | Flavin-binding kelch repeat F-box [Medic | 0.995 | 0.979 | 0.827 | 0.0 | |
| 224101897 | 639 | predicted protein [Populus trichocarpa] | 0.926 | 0.906 | 0.884 | 0.0 | |
| 375126879 | 629 | flavin-binding, kelch repeat, f-box 1/ad | 0.969 | 0.963 | 0.830 | 0.0 | |
| 225424384 | 610 | PREDICTED: adagio protein 3-like [Vitis | 0.918 | 0.940 | 0.884 | 0.0 | |
| 297841519 | 623 | flavin-binding kelch domain F box protei | 0.972 | 0.975 | 0.800 | 0.0 |
| >gi|351727583|ref|NP_001235886.1| circadian clock-associated FKF1 [Glycine max] gi|87138101|gb|ABD28287.1| circadian clock-associated FKF1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/622 (86%), Positives = 565/622 (90%), Gaps = 9/622 (1%)
Query: 5 KDKEEEEEGEGVIQGSGKRQKCSFEGGGGGGGDDTE-LSLKPGLLFYPTTPTSFVVADAF 63
KDKE+ ++ +GKR KC ++ L LKPG FYPTTPTSFVV+DA
Sbjct: 10 KDKED-------VRNTGKRLKCMRNEEEEVYEEEESELPLKPGFFFYPTTPTSFVVSDAL 62
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
+PDFPIIYVNKVFEI TGYRADE LGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE
Sbjct: 63 EPDFPIIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 122
Query: 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKE 183
G+EFQGELLNF+KDGTPLVNRLRLAPI DDDGTVTH+IGIQ+FSEA IDLN VSYPVFKE
Sbjct: 123 GVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKE 182
Query: 184 NCNQQYDQSAQYF-SGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASIGSVCRR 242
CNQ +D++ +Y G S SQHQ++CGILQLSDEVLAHNILSRLTPRDVASIGSVCRR
Sbjct: 183 TCNQDFDKTGKYNPKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRR 242
Query: 243 IRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCWRKFTVRGAV 302
IRQLTKNEHVRKMVCQNAWG+EVTG LELMTKKLGWGRL RELTTLEAVCWRK TV GAV
Sbjct: 243 IRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAV 302
Query: 303 EPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362
EPSRCNFSACAAGNRLVLFGGEGV+MQPMDDTFVLNLDA NPEWRRVSVKSSPPGRWGHT
Sbjct: 303 EPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHT 362
Query: 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSK 422
LS LNGSWLVVFGGCGRQGLLNDVFVLDLDA+QPTW EV GG PPLPRSWHSSC IEGSK
Sbjct: 363 LSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSK 422
Query: 423 LVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGL 482
LVVSGGCTDAGVLLSDTYLLDLTTD P WREIPTSW+PPSRLGHSLSVYGRTK+LMFGGL
Sbjct: 423 LVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGL 482
Query: 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542
AKSGHLRLRSGE+YTIDL DE+PQW+QLE +AFTG+ SQSAVVPPPRLDHVAVSMPCGRI
Sbjct: 483 AKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRI 542
Query: 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602
IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH
Sbjct: 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602
Query: 603 TGEEWVLNELHELCLASKQDSD 624
T EEW+LNELHELCLAS+QDSD
Sbjct: 603 TXEEWILNELHELCLASRQDSD 624
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449016|ref|XP_004142261.1| PREDICTED: adagio protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/633 (84%), Positives = 567/633 (89%), Gaps = 19/633 (3%)
Query: 3 SKKDKEEEEEGEGVIQGSGKRQKCS--------FEGGGGGGGDDTELSLKPGLLFYPTTP 54
+K D E E + SGKR KCS TEL LKPGL FYP P
Sbjct: 4 AKNDDEPE------LHSSGKRLKCSKHDDEQYHLGNEEEEEEQVTELPLKPGLFFYPMAP 57
Query: 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVV 114
TSFVV+DA +PDFPIIYVNKVFEIFTGYRADEVLG+NCRFLQYRDPRAQRRHPLVDPVVV
Sbjct: 58 TSFVVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQYRDPRAQRRHPLVDPVVV 117
Query: 115 SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174
SEIRRCLEEG+EFQGELLNF+KDGTP+VNRLRLAPI DDDGTVTHIIGIQ+FSE KIDLN
Sbjct: 118 SEIRRCLEEGVEFQGELLNFRKDGTPMVNRLRLAPIHDDDGTVTHIIGIQVFSETKIDLN 177
Query: 175 HVSYPVFKENCNQQYD---QSAQYFSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPR 231
+SYPVFKENC +YD +SA SP H++ICGILQLSDEVLAHNILSRLTPR
Sbjct: 178 RLSYPVFKENCAIKYDLSGKSAHLID--QSPFGHHKEICGILQLSDEVLAHNILSRLTPR 235
Query: 232 DVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAV 291
DVAS+GSVCRRIRQLTKNEH+RKMVCQNAWGREVTG LE MTKKLGWGRLARELTTLEAV
Sbjct: 236 DVASVGSVCRRIRQLTKNEHLRKMVCQNAWGREVTGTLEQMTKKLGWGRLARELTTLEAV 295
Query: 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV 351
CWRK TV GAVEP RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV
Sbjct: 296 CWRKMTVGGAVEPLRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV 355
Query: 352 KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411
KSSPPGRWGHTLS LNGSWLVVFGGCG QGLLNDVFVLDLDA+QPTW E+SGGAPPLPRS
Sbjct: 356 KSSPPGRWGHTLSCLNGSWLVVFGGCGSQGLLNDVFVLDLDAQQPTWKEISGGAPPLPRS 415
Query: 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471
WHSSC+IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP WREIPTS +PPSRLGHSLSVY
Sbjct: 416 WHSSCMIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPTWREIPTSGTPPSRLGHSLSVY 475
Query: 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLD 531
GRTK+LMFGGLAKSGHLRLRSGE+YTIDL +EEPQW+QLEC+AFTG+G QSAVVPPPRLD
Sbjct: 476 GRTKILMFGGLAKSGHLRLRSGEAYTIDLEEEEPQWRQLECSAFTGIGGQSAVVPPPRLD 535
Query: 532 HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV 591
HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP+EEKPSWRILNVPGQPPKFAWGHSTCVV
Sbjct: 536 HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAWGHSTCVV 595
Query: 592 GGTRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
GGTRVLVLGGHTGEEW+LNELHELCLAS+QDSD
Sbjct: 596 GGTRVLVLGGHTGEEWILNELHELCLASRQDSD 628
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584973|ref|XP_002533198.1| Adagio protein, putative [Ricinus communis] gi|223526996|gb|EEF29190.1| Adagio protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/626 (84%), Positives = 570/626 (91%), Gaps = 10/626 (1%)
Query: 7 KEEEEEGEGVIQGSGKRQKCS---------FEGGGGGGGDDTELSLKPGLLFYPTTPTSF 57
KEEE + + + SGKR KC+ E ++ E L YP TPTS
Sbjct: 5 KEEENDDDEQLHSSGKRLKCATPEQPQEHEEEEEEEEEEEEEEEMEHIPFLMYPETPTSI 64
Query: 58 VVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEI 117
VV+DA +PDFPIIYVNKVFEIFTGYRADEVLG+NCRFLQ+RDPRAQRRHPLVDPVVVSE+
Sbjct: 65 VVSDALEPDFPIIYVNKVFEIFTGYRADEVLGQNCRFLQFRDPRAQRRHPLVDPVVVSEV 124
Query: 118 RRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVS 177
RRCLEEGIEFQGELLNF+KDGTPL+NRLRLA IRDDDG VTH+IGIQ+FSEAKIDLN VS
Sbjct: 125 RRCLEEGIEFQGELLNFRKDGTPLINRLRLAHIRDDDGIVTHVIGIQMFSEAKIDLNRVS 184
Query: 178 YPVFKENCNQQYDQSAQY-FSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASI 236
YPVFKE+CNQ+ QSA+Y G SP +QHQ+ICGIL+LSDEVLAHNILSRLTPRDVASI
Sbjct: 185 YPVFKESCNQKSYQSAKYPHLSGSSPFTQHQEICGILRLSDEVLAHNILSRLTPRDVASI 244
Query: 237 GSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCWRKF 296
GSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAV WRK
Sbjct: 245 GSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVSWRKL 304
Query: 297 TVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP 356
TV GAVEPSRCNFSACAAGNRLVLFGGEGV+MQPMDDTFVLNLDAANPEWRRVSVKSSPP
Sbjct: 305 TVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAANPEWRRVSVKSSPP 364
Query: 357 GRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSC 416
GRWGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE+SGGAPPLPRSWHSSC
Sbjct: 365 GRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEISGGAPPLPRSWHSSC 424
Query: 417 IIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKV 476
IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP+W+EIPTSW+PPSRLGHSLSVYGR+K+
Sbjct: 425 TIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPIWKEIPTSWAPPSRLGHSLSVYGRSKI 484
Query: 477 LMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536
LMFGGLAKSGHLRLRSGE+YTIDL D+EPQW+QL+CNAFTGVGSQS+VVPPPRLDHVA++
Sbjct: 485 LMFGGLAKSGHLRLRSGEAYTIDLEDDEPQWRQLDCNAFTGVGSQSSVVPPPRLDHVALT 544
Query: 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRV 596
MPCGRIIIFGGS+AGLHSPSQLFLLDPSE KPSWR LNVPGQ PKFAWGHSTCVVGGTRV
Sbjct: 545 MPCGRIIIFGGSMAGLHSPSQLFLLDPSEAKPSWRTLNVPGQRPKFAWGHSTCVVGGTRV 604
Query: 597 LVLGGHTGEEWVLNELHELCLASKQD 622
LVLGGHTGEEW+LNELHELCLAS+QD
Sbjct: 605 LVLGGHTGEEWILNELHELCLASRQD 630
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524615|ref|XP_003530924.1| PREDICTED: adagio protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/638 (83%), Positives = 564/638 (88%), Gaps = 21/638 (3%)
Query: 1 MTSKKDKEEEEEGEGVIQGSGKRQKCS-------------FEGGGGGGGDDTELSLKPGL 47
M K+KE+ +Q SGKR KC+ +D+EL LK GL
Sbjct: 1 MAMPKEKED-------VQNSGKRLKCTRNEEEEKEQYEQVEADEEEEEEEDSELPLKLGL 53
Query: 48 LFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHP 107
FYPT PTSFVV+DA +PDFPIIYVNKVFEI TGYRADE LGRNCRFLQYRD RAQRRHP
Sbjct: 54 FFYPTIPTSFVVSDALEPDFPIIYVNKVFEIATGYRADEALGRNCRFLQYRDRRAQRRHP 113
Query: 108 LVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167
LVDPVVVSEIRRCLEEG+EFQGELLNF+KDGTPLVNR+RL I DDDGTVTH+IGIQ+FS
Sbjct: 114 LVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRVRLTLIHDDDGTVTHVIGIQLFS 173
Query: 168 EAKIDLNHVSYPVFKENCNQQYDQSAQYF-SGGHSPLSQHQDICGILQLSDEVLAHNILS 226
EA IDLN VSYPVFKE CNQ +D++ +Y G S SQHQ++C ILQLSDEVLAHNILS
Sbjct: 174 EANIDLNRVSYPVFKETCNQDFDKNGKYTPKSGQSLYSQHQEMCSILQLSDEVLAHNILS 233
Query: 227 RLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELT 286
RLTPRDVASIGSVCRR+RQLTKNEHVRKMVCQNAWG+EVTG LELMTKK+GWGRL RELT
Sbjct: 234 RLTPRDVASIGSVCRRVRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKMGWGRLTRELT 293
Query: 287 TLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW 346
TLEAVCWRK TV GAVEPSRCNFSACAAGNRLVLFGGEGV+MQPMDDTFVLNLDA NPEW
Sbjct: 294 TLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEW 353
Query: 347 RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP 406
RRVSVKSSPPGRWGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDA+QPTW EV GG P
Sbjct: 354 RRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTP 413
Query: 407 PLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466
PLPRSWHSSC IEGSKLVVSGGCTD GVLLSDTYLLDLTTD P+WREIPTSW+PPSRLGH
Sbjct: 414 PLPRSWHSSCTIEGSKLVVSGGCTDTGVLLSDTYLLDLTTDNPIWREIPTSWAPPSRLGH 473
Query: 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526
SLSVYGRTK+LMFGGLAKSGHLRLRSGE+YTIDL DE+PQW+QLE +AFTG+ SQSAVVP
Sbjct: 474 SLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVP 533
Query: 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH 586
PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH
Sbjct: 534 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH 593
Query: 587 STCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
STCVVGGTRVLVLGGHTGEEW+LNELHELCLAS+ DSD
Sbjct: 594 STCVVGGTRVLVLGGHTGEEWILNELHELCLASRHDSD 631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108263|ref|XP_002314780.1| predicted protein [Populus trichocarpa] gi|222863820|gb|EEF00951.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/580 (88%), Positives = 543/580 (93%), Gaps = 1/580 (0%)
Query: 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRR 105
GL F+PTTP SFVV+DA + DFPIIYVNKVFEIFTGY A EVLGRNCRFLQYRDPRAQRR
Sbjct: 7 GLFFHPTTPVSFVVSDALELDFPIIYVNKVFEIFTGYHAHEVLGRNCRFLQYRDPRAQRR 66
Query: 106 HPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
HPLVDP VVSEIRRCLEEG+EFQGELLNF+KDGTPLVNRLRL PI DDDG +T +IGIQ+
Sbjct: 67 HPLVDPAVVSEIRRCLEEGMEFQGELLNFRKDGTPLVNRLRLVPIHDDDGIITQVIGIQV 126
Query: 166 FSEAKIDLNHVSYPVFKENCNQQYDQSAQYF-SGGHSPLSQHQDICGILQLSDEVLAHNI 224
FSEAKIDLNHVSYPV+KE CNQ+ D SA Y G SP +QHQ+ICGILQLSDEVLAHNI
Sbjct: 127 FSEAKIDLNHVSYPVYKETCNQRSDHSANYSPRHGQSPFTQHQEICGILQLSDEVLAHNI 186
Query: 225 LSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARE 284
LSRLTPRDVASIGSVCRRIRQLTKNE VRKMVCQNAWGREVTGALELMTKKLGWGRLARE
Sbjct: 187 LSRLTPRDVASIGSVCRRIRQLTKNEQVRKMVCQNAWGREVTGALELMTKKLGWGRLARE 246
Query: 285 LTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 344
LTTLEAVCWRK TV GAVEPSRCNFSACA GNRLVLFGGEGVNMQPMDDTFVLNLDAANP
Sbjct: 247 LTTLEAVCWRKVTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 306
Query: 345 EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG 404
W+R+SVKSSPPGRWGHTLS LNGSWLV+FGGCGRQGLLNDVFV+DLDAKQPTW EVSGG
Sbjct: 307 VWQRISVKSSPPGRWGHTLSCLNGSWLVLFGGCGRQGLLNDVFVMDLDAKQPTWKEVSGG 366
Query: 405 APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464
PPLPRSWHSSC IEGSKLVVSGGCTDAGVLLSDTYLLDLT DKP+WREIP +W+PPSRL
Sbjct: 367 TPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDKPIWREIPATWAPPSRL 426
Query: 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524
GHSLSVYGRTK+LMFGGLAKSGHLRLRSGE+YTIDL DEEP W+QLEC+A TG+GSQS+V
Sbjct: 427 GHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPHWRQLECSALTGIGSQSSV 486
Query: 525 VPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 584
VPPPRLDHVAVSMPCGR IIFGGSIAGLHSPSQLFLLDP+EEKPSWRILNVPGQPPK AW
Sbjct: 487 VPPPRLDHVAVSMPCGRNIIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKLAW 546
Query: 585 GHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
GHSTCVVGGTRVLVLGGHTGEEW+LNELHELCLASKQDS+
Sbjct: 547 GHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASKQDSE 586
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521357|ref|XP_003630967.1| Flavin-binding kelch repeat F-box [Medicago truncatula] gi|355524989|gb|AET05443.1| Flavin-binding kelch repeat F-box [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/631 (82%), Positives = 559/631 (88%), Gaps = 9/631 (1%)
Query: 3 SKKDKEEEEEGEGVIQGSGKRQKC------SFEGGGGGGGDDTELSLKPGLLFYPTTPTS 56
++ KE+EEE Q GKR KC E +++EL LKP L FYPTTPTS
Sbjct: 4 ARDKKEDEEEVHNQNQKVGKRLKCMNMMKNEQEENQVVDEEESELPLKPELFFYPTTPTS 63
Query: 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
FVV+DA + DFPIIYVNKVFEI TGYRA E LGRNCRFLQYRDPRAQRRHPLVDPVVVSE
Sbjct: 64 FVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSE 123
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176
IRRCLEEGIEFQGELLNF+KDGTPLVNRLRL PI DDDG VTHIIGIQIFSEA IDLN V
Sbjct: 124 IRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRV 183
Query: 177 SYPVFKENCNQQYDQSAQYFSGGHSPL---SQHQDICGILQLSDEVLAHNILSRLTPRDV 233
SYPVF+E C Q +D++A+Y L + +++CGILQLSDEVLAHNILSRLTPRDV
Sbjct: 184 SYPVFRETCIQDFDKNAKYSPKSGKLLYTPQKREEMCGILQLSDEVLAHNILSRLTPRDV 243
Query: 234 ASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCW 293
ASIGSVCRRIRQLTKNEHVRKMVCQNAWG+EVTG LELMTKKLGWGRL RELTTLEAVCW
Sbjct: 244 ASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCW 303
Query: 294 RKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS 353
+K TV G VEPSRCNFSACAAGNRLVLFGGEGV+MQPMDDTFVLNLDA NPEW+RVSV S
Sbjct: 304 KKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVIS 363
Query: 354 SPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413
SPPGRWGHTLS LN SWLVVFGGCGRQGLLNDVFVLDLDA+QPTW EV G APPLPRSWH
Sbjct: 364 SPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWH 423
Query: 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473
SSC IEGSKLVVSGGCTDAGVLLSDTYLLDLT D P WREIPTSW+PPSRLGHSLSVYGR
Sbjct: 424 SSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGR 483
Query: 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHV 533
TK+LMFGGLAKSGHLRLRSGE+YTIDL E+PQW+QLEC+AFTG+ +Q+AVVPPPRLDHV
Sbjct: 484 TKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHV 543
Query: 534 AVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593
AVSMPCGR+IIFGGSIAGLHSPSQLFLLDP+EEKP+WRILNVPG+PPKFAWGHSTCVVGG
Sbjct: 544 AVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGG 603
Query: 594 TRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
TRVLVLGGHTGEEWVLNELHELCLAS+QDSD
Sbjct: 604 TRVLVLGGHTGEEWVLNELHELCLASRQDSD 634
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101897|ref|XP_002312465.1| predicted protein [Populus trichocarpa] gi|222852285|gb|EEE89832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/580 (88%), Positives = 538/580 (92%), Gaps = 1/580 (0%)
Query: 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRR 105
GL FYPT PTSFVV+DA + DFPIIYVNKVF+ FTGY+A EVLG NCRFLQYRDP AQRR
Sbjct: 59 GLFFYPTNPTSFVVSDALELDFPIIYVNKVFQNFTGYQAHEVLGHNCRFLQYRDPHAQRR 118
Query: 106 HPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
HPLVDP VVSEIRRCLEEG+EFQGELLNF+KDGTPLVNRLRL PI DDDG +THII IQ+
Sbjct: 119 HPLVDPDVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLVPIHDDDGAITHIIAIQV 178
Query: 166 FSEAKIDLNHVSYPVFKENCNQQYDQSAQY-FSGGHSPLSQHQDICGILQLSDEVLAHNI 224
FSEAKIDLNHVSYPVFKE CNQ DQSA Y G S + H +ICGILQLSDEVLAHNI
Sbjct: 179 FSEAKIDLNHVSYPVFKETCNQLSDQSANYSLPRGQSTFTGHPEICGILQLSDEVLAHNI 238
Query: 225 LSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARE 284
LSRLTPRDVASI SVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARE
Sbjct: 239 LSRLTPRDVASIASVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARE 298
Query: 285 LTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 344
LTTLEAV WRK TV GAVEPSRCNFSACA GNRLVLFGGEGVNMQPMDDTFVLNLDAANP
Sbjct: 299 LTTLEAVRWRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 358
Query: 345 EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG 404
EW+R+SVKSSPPGRWGHTLS LNGS LVVFGGCGRQGLLNDVFVLDLDAKQPTW EVSGG
Sbjct: 359 EWQRISVKSSPPGRWGHTLSCLNGSCLVVFGGCGRQGLLNDVFVLDLDAKQPTWKEVSGG 418
Query: 405 APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464
PPLPRSWHSSC IEGSKLVVSGGCTDAGVLLSDTY+LDLTTDKPMWREI TSW+PPSRL
Sbjct: 419 TPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYMLDLTTDKPMWREIRTSWAPPSRL 478
Query: 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524
GHSLSVY RTK+LMFGGLA SGHLRLRSGE+YTIDL DEEPQW+QLEC+A TG+GSQS+
Sbjct: 479 GHSLSVYDRTKILMFGGLANSGHLRLRSGEAYTIDLEDEEPQWRQLECSALTGIGSQSSD 538
Query: 525 VPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 584
VPPPRLDHVAVSMPCGRI+IFGGSIAGLHSPSQLFLLDP+EEKPSWRILNVPGQPPKFAW
Sbjct: 539 VPPPRLDHVAVSMPCGRILIFGGSIAGLHSPSQLFLLDPAEEKPSWRILNVPGQPPKFAW 598
Query: 585 GHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDSD 624
GHSTCVVGGTRVLVLGGHTGEEW+LNELHELCLAS+QDS+
Sbjct: 599 GHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSE 638
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|375126879|gb|AFA35966.1| flavin-binding, kelch repeat, f-box 1/adagio3 [Nicotiana attenuata] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/625 (83%), Positives = 551/625 (88%), Gaps = 19/625 (3%)
Query: 19 GSGKRQKCSFEGGGGGGGDDTE-----------------LSLKPGLLFYP-TTPTSFVVA 60
G GKR KCS D+ E S +P FYP TTP+S VV+
Sbjct: 4 GGGKRLKCSRNDNNNMDQDEEEEIFYDGYEVERENEQLPSSQQPVGFFYPSTTPSSIVVS 63
Query: 61 DAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120
DA +PD PIIYVN VFEI TGYRADEVLGRNCRFLQ+RDPRAQRRHPLVDPVVVSEIRRC
Sbjct: 64 DALEPDLPIIYVNTVFEISTGYRADEVLGRNCRFLQFRDPRAQRRHPLVDPVVVSEIRRC 123
Query: 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPV 180
LEEG+EFQGELLNF+KDGTPLVNRLRLAPI DDGTVTH+IGIQ+FSEAKIDLN VSYPV
Sbjct: 124 LEEGVEFQGELLNFRKDGTPLVNRLRLAPIHGDDGTVTHVIGIQVFSEAKIDLNTVSYPV 183
Query: 181 FKENCNQQYDQSAQY-FSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASIGSV 239
FKE C Q D+S++Y G QH++ICGILQLSDEVLAHNILSRLTPRDVASIGSV
Sbjct: 184 FKETCQPQCDKSSKYSIKSGDLLQCQHREICGILQLSDEVLAHNILSRLTPRDVASIGSV 243
Query: 240 CRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCWRKFTVR 299
CRRIRQLTKNEHVRKMVCQNAWG +VTG LE MTK+L WGRLARELTTLEAVCW+K TV
Sbjct: 244 CRRIRQLTKNEHVRKMVCQNAWGADVTGVLEHMTKRLAWGRLARELTTLEAVCWKKLTVG 303
Query: 300 GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359
GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW
Sbjct: 304 GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 363
Query: 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE 419
GHTLS LNGSWLVVFGGCGR+GLLNDVFVLDLDAKQPTW EVSGG PPLPRSWHSSC +E
Sbjct: 364 GHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAKQPTWKEVSGGTPPLPRSWHSSCTME 423
Query: 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMF 479
GSKLVVSGGCTDAGVLLSDTYLLDLT DKP WREIPT+W+PPSRLGHSLS YG+TK+LMF
Sbjct: 424 GSKLVVSGGCTDAGVLLSDTYLLDLTIDKPTWREIPTTWAPPSRLGHSLSAYGKTKILMF 483
Query: 480 GGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539
GGLAKSGHLRLRSGESYTIDL DE PQW+QL+C AFTGVGSQ+AV+PPPRLDHVAV+MPC
Sbjct: 484 GGLAKSGHLRLRSGESYTIDLEDERPQWRQLDCGAFTGVGSQNAVIPPPRLDHVAVTMPC 543
Query: 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVL 599
GRIIIFGGSIAGLHSPSQLFLLDPSEEKP WR LNVPGQPPKFAWGHSTCVVGGTRVLVL
Sbjct: 544 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPLWRTLNVPGQPPKFAWGHSTCVVGGTRVLVL 603
Query: 600 GGHTGEEWVLNELHELCLASKQDSD 624
GGHTGEEW+LNE++ELCLASKQDSD
Sbjct: 604 GGHTGEEWILNEVYELCLASKQDSD 628
|
Source: Nicotiana attenuata Species: Nicotiana attenuata Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424384|ref|XP_002281284.1| PREDICTED: adagio protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/581 (88%), Positives = 535/581 (92%), Gaps = 7/581 (1%)
Query: 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRR 105
G FYPT P++FVV+D + DFPIIYVN VFE TGYRADEVLGRN DPRAQRR
Sbjct: 36 GSFFYPTVPSAFVVSDVLETDFPIIYVNSVFETSTGYRADEVLGRNW------DPRAQRR 89
Query: 106 HPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
HPLVDPVVVSEIRRCLEEGIEFQGELLNF+KDGTPLVN+LRLAPI DDDG VTHIIGIQ+
Sbjct: 90 HPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNQLRLAPIHDDDGVVTHIIGIQV 149
Query: 166 FSEAKIDLNHVSYPVFKENCNQQYDQSAQYFS-GGHSPLSQHQDICGILQLSDEVLAHNI 224
FSEAKIDLNHVSYPVFKE DQS Y GG + +QHQ+ICG LQLSDEVLAHNI
Sbjct: 150 FSEAKIDLNHVSYPVFKETGYPHVDQSGNYSPVGGQAQHAQHQEICGFLQLSDEVLAHNI 209
Query: 225 LSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARE 284
LSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQN+WGREVTG LELMTKKLGWGRLARE
Sbjct: 210 LSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNSWGREVTGTLELMTKKLGWGRLARE 269
Query: 285 LTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 344
LTTLEAVCW+K TV GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP
Sbjct: 270 LTTLEAVCWKKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP 329
Query: 345 EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG 404
EWR+VSVKSSPPGRWGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDAK PTW EV GG
Sbjct: 330 EWRQVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAKHPTWKEVFGG 389
Query: 405 APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464
PPLPRSWHSSC IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW+PPSRL
Sbjct: 390 TPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWAPPSRL 449
Query: 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524
GHSLSVYGRTK+LMFGGLAKSGHLRLRSGE+YTIDL DE P W+QLEC+ FTG+GSQSAV
Sbjct: 450 GHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDERPHWRQLECSGFTGIGSQSAV 509
Query: 525 VPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 584
VPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW
Sbjct: 510 VPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 569
Query: 585 GHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDSDQ 625
GHSTCVVGGTRVLVLGGHTGEEW+LNELHELCLAS+QDSDQ
Sbjct: 570 GHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDQ 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841519|ref|XP_002888641.1| flavin-binding kelch domain F box protein [Arabidopsis lyrata subsp. lyrata] gi|297334482|gb|EFH64900.1| flavin-binding kelch domain F box protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/626 (80%), Positives = 551/626 (88%), Gaps = 18/626 (2%)
Query: 1 MTSKKDKEEEEEGEGVIQGSGKRQKCSFEGGGGGGGDDTELSLKPGLLFYPTTPTSFVVA 60
+T K+ K + E EG I + Q +D +L L+ G+++YP TP SF+V+
Sbjct: 13 VTGKRKKRDRVEEEGDIYDGIENQDVV---------EDGKLPLEVGMVYYPVTPPSFIVS 63
Query: 61 DAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120
DA +PDFP+IYVNKVFE+FTGY ADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC
Sbjct: 64 DALEPDFPLIYVNKVFEVFTGYHADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 123
Query: 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPV 180
LEEGIEFQGELLNF+KDGTPLVNRLRLA IRDDDGTVTH+IGIQ+FSE IDL+ VSYPV
Sbjct: 124 LEEGIEFQGELLNFRKDGTPLVNRLRLALIRDDDGTVTHVIGIQVFSETTIDLDRVSYPV 183
Query: 181 FKENCNQQYDQSAQYFSGGHSPL--SQHQDICGILQLSDEVLAHNILSRLTPRDVASIGS 238
FK QQ DQ+++ G SP H+D CGILQ+SDEVLAHNILSRLTPRDVASIGS
Sbjct: 184 FKHK--QQLDQTSECLLPGGSPRFKEHHEDFCGILQMSDEVLAHNILSRLTPRDVASIGS 241
Query: 239 VCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRLARELTTLEAVCWRKFTV 298
CRR+RQLTKNE VRKMVCQNAWG+E+TG LE+MTKKLGWGRLARELTTLEAVCWRKFTV
Sbjct: 242 ACRRLRQLTKNESVRKMVCQNAWGKEITGTLEIMTKKLGWGRLARELTTLEAVCWRKFTV 301
Query: 299 RGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGR 358
G V+PSRCNFSACA GNRLVLFGGEGVNMQP+DDTFVLNLDA PEW+RV V SSPPGR
Sbjct: 302 GGIVQPSRCNFSACAVGNRLVLFGGEGVNMQPLDDTFVLNLDAEYPEWQRVRVTSSPPGR 361
Query: 359 WGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII 418
WGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDAK PTW EV+GG PPLPRSWHSSC I
Sbjct: 362 WGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAKHPTWKEVAGGTPPLPRSWHSSCTI 421
Query: 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLM 478
EGSKLVVSGGCTDAGVLLSDT+LLDLTTDKP W+EIPTSW+PPSRLGHSLSV+GRTK+LM
Sbjct: 422 EGSKLVVSGGCTDAGVLLSDTFLLDLTTDKPTWKEIPTSWAPPSRLGHSLSVFGRTKILM 481
Query: 479 FGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP 538
FGGLA SGHL+LRSGE+YTIDL DEEP+W++LEC++FTG AVVPPPRLDHVAVSMP
Sbjct: 482 FGGLANSGHLKLRSGEAYTIDLEDEEPRWRELECSSFTG-----AVVPPPRLDHVAVSMP 536
Query: 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLV 598
CGR+IIFGGSIAGLHSPSQLFL+DP+EEKPSWRILNVPG+PPK AWGHSTCVVGGTRVLV
Sbjct: 537 CGRVIIFGGSIAGLHSPSQLFLIDPAEEKPSWRILNVPGKPPKLAWGHSTCVVGGTRVLV 596
Query: 599 LGGHTGEEWVLNELHELCLASKQDSD 624
LGGHTGEEW+LNELHELCLAS+QDSD
Sbjct: 597 LGGHTGEEWILNELHELCLASRQDSD 622
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| TAIR|locus:2200176 | 619 | FKF1 "AT1G68050" [Arabidopsis | 0.929 | 0.938 | 0.788 | 1.1e-261 | |
| TAIR|locus:2172994 | 626 | ZTL "AT5G57360" [Arabidopsis t | 0.908 | 0.907 | 0.627 | 1.1e-197 | |
| TAIR|locus:505006254 | 611 | LKP2 "AT2G18915" [Arabidopsis | 0.894 | 0.914 | 0.595 | 3.4e-187 | |
| TAIR|locus:2033934 | 478 | AT1G51550 "AT1G51550" [Arabido | 0.416 | 0.543 | 0.297 | 2.4e-18 | |
| UNIPROTKB|Q8H935 | 963 | Vfphot1a "Phototropin" [Vicia | 0.161 | 0.104 | 0.454 | 1.3e-16 | |
| TAIR|locus:2155821 | 915 | PHOT2 "phototropin 2" [Arabido | 0.168 | 0.114 | 0.438 | 3.4e-16 | |
| UNIPROTKB|Q9ST27 | 907 | PHOT2 "Phototropin-2" [Oryza s | 0.161 | 0.111 | 0.472 | 4.3e-16 | |
| UNIPROTKB|Q2QYY8 | 921 | PHOT1A "Phototropin-1A" [Oryza | 0.198 | 0.134 | 0.397 | 2.4e-15 | |
| UNIPROTKB|Q2RBR1 | 921 | PHOT1B "Phototropin-1B" [Oryza | 0.198 | 0.134 | 0.397 | 2.4e-15 | |
| TAIR|locus:2102674 | 996 | PHOT1 "phototropin 1" [Arabido | 0.168 | 0.105 | 0.429 | 2.1e-14 |
| TAIR|locus:2200176 FKF1 "AT1G68050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2518 (891.4 bits), Expect = 1.1e-261, P = 1.1e-261
Identities = 465/590 (78%), Positives = 509/590 (86%)
Query: 37 DDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96
+D +L L+ G+ +YP TP SF+V+DA +PDFP+IYVN+VFE+FTGYRADEVLGRNCRFLQ
Sbjct: 36 EDEKLPLEVGMFYYPMTPPSFIVSDALEPDFPLIYVNRVFEVFTGYRADEVLGRNCRFLQ 95
Query: 97 YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGT 156
YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNF+KDGTPLVNRLRLAPIRDDDGT
Sbjct: 96 YRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIRDDDGT 155
Query: 157 VTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPL--SQHQDICGILQ 214
+TH+IGIQ+FSE IDL+ VSYPVFK QQ DQ+++ SP H+D CGILQ
Sbjct: 156 ITHVIGIQVFSETTIDLDRVSYPVFKHK--QQLDQTSECLFPSGSPRFKEHHEDFCGILQ 213
Query: 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTK 274
LSDEVLAHNILSRLTPRDVASIGS CRR+RQLTKNE VRKMVCQNAWG+E+TG LE+MTK
Sbjct: 214 LSDEVLAHNILSRLTPRDVASIGSACRRLRQLTKNESVRKMVCQNAWGKEITGTLEIMTK 273
Query: 275 KLGWGRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDT 334
KL WGRLARELTTLEAVCWRKFTV G V+PSRCNFSACA GNRLVLFGGEGVNMQP+DDT
Sbjct: 274 KLRWGRLARELTTLEAVCWRKFTVGGIVQPSRCNFSACAVGNRLVLFGGEGVNMQPLDDT 333
Query: 335 FVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394
FVLNLDA PEW+RV V SSPPGRWGHTLS LNGSWLVVFGGCGRQGLLNDVFVLDLDAK
Sbjct: 334 FVLNLDAECPEWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 393
Query: 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVXXXXXXXXXXXXXKPMWREI 454
PTW EV+GG PPLPRSWHSSC IEGSKLVVSGGCTDAGV KP W+EI
Sbjct: 394 HPTWKEVAGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTFLLDLTTDKPTWKEI 453
Query: 455 PTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNA 514
PTSW+PPSRLGHSLSV+GRTK+LMFGGLA SGHL+LRSGE+YTIDL DEEP+W++LEC+A
Sbjct: 454 PTSWAPPSRLGHSLSVFGRTKILMFGGLANSGHLKLRSGEAYTIDLEDEEPRWRELECSA 513
Query: 515 FTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574
F GV VVPPPRLDHVAVSMPCGR+IIFGGSIAGLHSPSQLFL+DP+EEKPSWRILN
Sbjct: 514 FPGV-----VVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLIDPAEEKPSWRILN 568
Query: 575 VPGQPPKFAWGHSTCXXXXXXXXXXXXXXXEEWVLNELHELCLASKQDSD 624
VPG+PPK AWGHSTC EEW+LNELHELCLAS+QDSD
Sbjct: 569 VPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSD 618
|
|
| TAIR|locus:2172994 ZTL "AT5G57360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
Identities = 366/583 (62%), Positives = 437/583 (74%)
Query: 37 DDTELSLKPG--LLFYP------TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVL 88
DD E L PG + YP T P FVV DA +PD PIIYVN VFE+ TGYRA+EVL
Sbjct: 19 DDEEGGLFPGGGPIPYPVGNLLHTAPCGFVVTDAVEPDQPIIYVNTVFEMVTGYRAEEVL 78
Query: 89 GRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLA 148
G NCRFLQ R P A+RRHPLVD +VVSEIR+C++EGIEFQGELLNF+KDG+PL+NRLRL
Sbjct: 79 GGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFRKDGSPLMNRLRLT 138
Query: 149 PIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQD 208
PI DD T+THIIGIQ F E IDL V KE + D + G +S+
Sbjct: 139 PIYGDDDTITHIIGIQFFIETDIDLGPVLGSSTKE---KSIDGIYSALAAGERNVSR--G 193
Query: 209 ICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGA 268
+CG+ QLSDEV++ ILSRLTPRDVAS+ SVCRR+ LTKNE + + VCQNAWG E T
Sbjct: 194 MCGLFQLSDEVVSMKILSRLTPRDVASVSSVCRRLYVLTKNEDLWRRVCQNAWGSETTRV 253
Query: 269 LELM--TKKLGWGRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGV 326
LE + K+LGWGRLARELTTLEA WRK +V G+VEPSRCNFSACA GNR+VLFGGEGV
Sbjct: 254 LETVPGAKRLGWGRLARELTTLEAAAWRKLSVGGSVEPSRCNFSACAVGNRVVLFGGEGV 313
Query: 327 NMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386
NMQPM+DTFVL+L++ PEW+ V V S PPGRWGHTL+ +NGS LVVFGGCG+QGLLNDV
Sbjct: 314 NMQPMNDTFVLDLNSDYPEWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQQGLLNDV 373
Query: 387 FVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVXXXXXXXXXXXX 446
FVL+LDAK PTW E+SG APPLPRSWHSSC ++G+KL+VSGGC D+GV
Sbjct: 374 FVLNLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSI 433
Query: 447 XKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ 506
KP+WREIP +W+PPSRLGH+LSVYG K+LMFGGLAKSG L+ RS + +T+DL +EEP
Sbjct: 434 EKPVWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLKFRSSDVFTMDLSEEEPC 493
Query: 507 WKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE 566
W+ + + G G+ V PPPRLDHVAV++P GRI+IFGGS+AGLHS SQL+LLDP+E+
Sbjct: 494 WRCVTGSGMPGAGNPGGVAPPPRLDHVAVNLPGGRILIFGGSVAGLHSASQLYLLDPTED 553
Query: 567 KPSWRILNVPGQPPKFAWGHSTCXXXXXXXXXXXXXXXEEWVL 609
KP+WRILN+PG+PP+FAWGH TC EEW+L
Sbjct: 554 KPTWRILNIPGRPPRFAWGHGTCVVGGTRAIVLGGQTGEEWML 596
|
|
| TAIR|locus:505006254 LKP2 "AT2G18915" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1815 (644.0 bits), Expect = 3.4e-187, P = 3.4e-187
Identities = 341/573 (59%), Positives = 427/573 (74%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T P FVV+DA +PD PIIYVN VFEI TGYRA+EV+GRNCRFLQ R P +RRHP+VD
Sbjct: 42 TAPCGFVVSDALEPDNPIIYVNTVFEIVTGYRAEEVIGRNCRFLQCRGPFTKRRHPMVDS 101
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171
+V+++R+CLE GIEFQGELLNF+KDG+PL+N+LRL PIR++D +TH IG+ +F++AKI
Sbjct: 102 TIVAKMRQCLENGIEFQGELLNFRKDGSPLMNKLRLVPIREED-EITHFIGVLLFTDAKI 160
Query: 172 DLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQH---QDICGILQLSDEVLAHNILSRL 228
DL P ++ + ++ F+ P+ + + +CGI +LSDEV+A ILS+L
Sbjct: 161 DLG--PSPDLSA---KEIPRISRSFTSA-LPIGERNVSRGLCGIFELSDEVIAIKILSQL 214
Query: 229 TPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELM--TKKLGWGRLARELT 286
TP D+AS+G VCRR+ +LTKN+ V +MVCQN WG E T LE + K++GW RLARE T
Sbjct: 215 TPGDIASVGCVCRRLNELTKNDDVWRMVCQNTWGTEATRVLESVPGAKRIGWVRLAREFT 274
Query: 287 TLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW 346
T EA WRKF+V G VEPSRCNFSACA GNR+V+FGGEGVNMQPM+DTFVL+L +++PEW
Sbjct: 275 THEATAWRKFSVGGTVEPSRCNFSACAVGNRIVIFGGEGVNMQPMNDTFVLDLGSSSPEW 334
Query: 347 RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP 406
+ V V S PPGRWGHTLS +NGS LVVFGG G GLLNDVF+LDLDA P+W EVSG AP
Sbjct: 335 KSVLVSSPPPGRWGHTLSCVNGSRLVVFGGYGSHGLLNDVFLLDLDADPPSWREVSGLAP 394
Query: 407 PLPRSWHSSCIIEGSKLVVSGGCTDAGVXXXXXXXXXXXXXKPMWREIPTSWSPPSRLGH 466
P+PRSWHSSC ++G+KL+VSGGC D+G P WREIP W+PPSRLGH
Sbjct: 395 PIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLDLSMDIPAWREIPVPWTPPSRLGH 454
Query: 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526
+L+VYG K+LMFGGLAK+G LR RS + YT+DL ++EP W+ + + G +A P
Sbjct: 455 TLTVYGDRKILMFGGLAKNGTLRFRSNDVYTMDLSEDEPSWRPVIGYGSSLPGGMAA--P 512
Query: 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH 586
PPRLDHVA+S+P GRI+IFGGS+AGL S SQL+LLDP+EEKP+WRILNV G PP+FAWGH
Sbjct: 513 PPRLDHVAISLPGGRILIFGGSVAGLDSASQLYLLDPNEEKPAWRILNVQGGPPRFAWGH 572
Query: 587 STCXXXXXXXXXXXXXXXEEWVLNELHELCLAS 619
+TC EEW+LNE HEL LA+
Sbjct: 573 TTCVVGGTRLVVLGGQTGEEWMLNEAHELLLAT 605
|
|
| TAIR|locus:2033934 AT1G51550 "AT1G51550" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 85/286 (29%), Positives = 138/286 (48%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP---EWRRVSVKSSPPGRWGHT 362
R + S + LVLFGG + +DDT+ +D +N +W++V +P GR+GHT
Sbjct: 123 RASHSLNFVNDHLVLFGGGCQGGRHLDDTWTSYVDKSNQSILKWKKVK-SGTPSGRFGHT 181
Query: 363 LSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQP-TWIEVSGGA---P-PLPRSWHSSC 416
+ G +L++FGG +G LND ++ + + +W ++ G+ P P PR HS+C
Sbjct: 182 CIVI-GEYLLLFGGINDRGERLNDTWIGQVFCHEGLSWKLLNVGSLQRPRPPPRGAHSAC 240
Query: 417 IIEGSKLVVSGGCTDAGVXXXXX--XXXXXXXXKPMWREIPTSWSPPSRLGHSLSVYGRT 474
I K+VV GG GV W + + PP R GH+L+
Sbjct: 241 CIAEKKMVVHGGIGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIREN 300
Query: 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDE-EPQWKQLECNAFTGVGSQSAVVPPPRLDHV 533
+V++FGG G+ L + + +D+ + E +W Q+ + F V +++ PR+ H
Sbjct: 301 QVVLFGGRGL-GYDVL--DDVWILDIQEPCEEKWIQIFYD-FQDVPEYASL---PRVGHS 353
Query: 534 AVSMPCGRIIIFGGSIAGLHSPSQLFLLD----PSEE-KPSWRILN 574
A + GRI+I+GG + H ++LD PS KP LN
Sbjct: 354 ATLVLGGRILIYGGEDSYRHRKDDFWVLDVKTIPSSGLKPQGLSLN 399
|
|
| UNIPROTKB|Q8H935 Vfphot1a "Phototropin" [Vicia faba (taxid:3906)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 50/110 (45%), Positives = 69/110 (62%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA PD+PI+Y + F TGY + EV+GRNCRF+Q D DP V+
Sbjct: 162 TFVVSDATKPDYPIMYASAGFFSMTGYTSKEVIGRNCRFMQGAD---------TDPNDVA 212
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR L G + G LLN+KKDGT N L +API+D+ G + +IG+Q+
Sbjct: 213 KIREALAAGTSYCGRLLNYKKDGTTFWNLLTIAPIKDEHGKILKLIGMQV 262
|
|
| TAIR|locus:2155821 PHOT2 "phototropin 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 50/114 (43%), Positives = 67/114 (58%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA P PI+Y + F TGY + E++GRNCRFLQ D D
Sbjct: 130 TLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPD---------TDK 180
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V++IR C++ G + G LLN+KKDGTP N L + PI+DD G IG+Q+
Sbjct: 181 NEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQV 234
|
|
| UNIPROTKB|Q9ST27 PHOT2 "Phototropin-2" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 52/110 (47%), Positives = 67/110 (60%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA PD PIIY ++ F TGY EV+GRNCRFLQ D D V+
Sbjct: 103 TFVVSDATRPDCPIIYASEGFFTMTGYSPREVVGRNCRFLQGPD---------TDAAEVA 153
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+IR ++ G F G LLN++KDG P N L + PIRDD+G V IG+Q+
Sbjct: 154 KIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFIGMQV 203
|
|
| UNIPROTKB|Q2QYY8 PHOT1A "Phototropin-1A" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 56/141 (39%), Positives = 81/141 (57%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA P+ PI+Y + F TGY + EV+GRNCRFLQ DP +
Sbjct: 137 TFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG---------TDPHEID 187
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI----FSEAKI 171
+IR+ L G + G +LN+KKDGTP N L +API+D+DG + IG+Q+ ++E K
Sbjct: 188 KIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKK 247
Query: 172 DL----NHVSYPVFKENCNQQ 188
D N +S + K + Q+
Sbjct: 248 DTVVRPNGLSESLIKYDARQK 268
|
|
| UNIPROTKB|Q2RBR1 PHOT1B "Phototropin-1B" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 56/141 (39%), Positives = 81/141 (57%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVV+DA P+ PI+Y + F TGY + EV+GRNCRFLQ DP +
Sbjct: 137 TFVVSDATHPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSG---------TDPHEID 187
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI----FSEAKI 171
+IR+ L G + G +LN+KKDGTP N L +API+D+DG + IG+Q+ ++E K
Sbjct: 188 KIRQSLANGSNYCGRILNYKKDGTPFWNLLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKK 247
Query: 172 DL----NHVSYPVFKENCNQQ 188
D N +S + K + Q+
Sbjct: 248 DTVVRPNGLSESLIKYDARQK 268
|
|
| TAIR|locus:2102674 PHOT1 "phototropin 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 49/114 (42%), Positives = 67/114 (58%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA PD+PI+Y + F TGY + EV+GRNCRFLQ A
Sbjct: 194 TFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADE------- 246
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
+++IR L G + G +LN+KKDGT N L +API+D+ G V IG+Q+
Sbjct: 247 --LAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVLKFIGMQV 298
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9W9 | ADO3_ARATH | No assigned EC number | 0.8338 | 0.9296 | 0.9386 | yes | no |
| Q2R2W1 | ADO3_ORYSJ | No assigned EC number | 0.7771 | 0.9008 | 0.8936 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.13 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 625 | |||
| PRK13558 | 665 | PRK13558, PRK13558, bacterio-opsin activator; Prov | 4e-30 | |
| PRK13559 | 361 | PRK13559, PRK13559, hypothetical protein; Provisio | 4e-28 | |
| pfam13426 | 101 | pfam13426, PAS_9, PAS domain | 5e-23 | |
| PRK13557 | 540 | PRK13557, PRK13557, histidine kinase; Provisional | 2e-20 | |
| TIGR00229 | 124 | TIGR00229, sensory_box, PAS domain S-box | 5e-10 | |
| TIGR02938 | 494 | TIGR02938, nifL_nitrog, nitrogen fixation negative | 8e-10 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 5e-08 | |
| pfam00989 | 113 | pfam00989, PAS, PAS fold | 5e-08 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 7e-08 | |
| cd00130 | 103 | cd00130, PAS, PAS domain; PAS motifs appear in arc | 4e-07 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 7e-07 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 2e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-06 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 5e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 6e-06 | |
| pfam08447 | 90 | pfam08447, PAS_3, PAS fold | 8e-06 | |
| pfam08448 | 110 | pfam08448, PAS_4, PAS fold | 2e-05 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 2e-05 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 4e-05 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 9e-05 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 1e-04 | |
| smart00086 | 43 | smart00086, PAC, Motif C-terminal to PAS motifs (l | 2e-04 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 2e-04 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 3e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 5e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 7e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.001 | |
| COG3055 | 381 | COG3055, COG3055, Uncharacterized protein conserve | 0.001 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 0.002 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.003 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.004 |
| >gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-30
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 9/111 (8%)
Query: 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVV 113
P +ADA PD P+IY+N FE TGY DEVLGRNCRFLQ D +
Sbjct: 158 PVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGED---------TNEER 208
Query: 114 VSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
V+E+R ++E EL N++KDG+ N++ +APIRD+DGTVTH +G Q
Sbjct: 209 VAELREAIDEERPTSVELRNYRKDGSTFWNQVDIAPIRDEDGTVTHYVGFQ 259
|
Length = 665 |
| >gnl|CDD|237427 PRK13559, PRK13559, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 37 DDTELSLKPGLLFYPT---TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCR 93
D + G LF T + + D PD PI+ N+ F TGY A+EV+GRNCR
Sbjct: 33 DPRDFRGASGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCR 92
Query: 94 FLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDD 153
FLQ DP+ V++IR + E ELLN++KDG P N L L P+ +
Sbjct: 93 FLQ---------GAATDPIAVAKIRAAIAAEREIVVELLNYRKDGEPFWNALHLGPVYGE 143
Query: 154 DGTVTHIIGIQI 165
DG + + G Q
Sbjct: 144 DGRLLYFFGSQW 155
|
Length = 361 |
| >gnl|CDD|222120 pfam13426, PAS_9, PAS domain | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 5e-23
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
DPD I+Y N GY +E+LG++ R L P D V+ +R L
Sbjct: 5 DPDGRIVYANDAALRLLGYTREELLGKSIRDLFG---------PGDDEEAVARLREALRN 55
Query: 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
G E + EL +KDG P + +P+RD+DG V I+GI
Sbjct: 56 GGEVEVELELRRKDGEPFPVLVSASPVRDEDGEVVGIVGILR 97
|
Length = 101 |
| >gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
TT +V D PD PI++ N+ F TGY A+E++G NCRFLQ P D
Sbjct: 38 TTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQ---------GPETDR 88
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V+E+R + E E E+LN++KDG+ N L ++P+ +D G + + G Q+
Sbjct: 89 ATVAEVRDAIAERREIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQL 142
|
Length = 540 |
| >gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
++P + +V D + I+YVN FE GY A+E++GRN L
Sbjct: 11 SSPDAIIV---IDLEGNILYVNPAFEEIFGYSAEELIGRNVLEL---------IPEEDRE 58
Query: 112 VVVSEIRRCLEEGIEFQGELLNFK-KDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
V I R LE E E + KDG+ + + ++PIR +G ++GI
Sbjct: 59 EVRERIERRLEGEREPVSEERRVRRKDGSEIWVEVSVSPIR-TNGGELGVVGI 110
|
The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator [Regulatory functions, Small molecule interactions]. Length = 124 |
| >gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 8e-10
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128
I+Y N F TGY +E++G+N L + P P V + L E +
Sbjct: 26 ILYANDAFTRITGYTKEEIIGKNESVL------SNHTTP---PEVYQALWGSLAEQKPWA 76
Query: 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
G+LLN +KDG + L +AP+ ++ G TH +G+
Sbjct: 77 GKLLNRRKDGELYLAELTVAPVLNEAGETTHFLGM 111
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, Protein interactions]. Length = 494 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-08
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456
PR++H+S I +L + GG + G +LSD ++ DL+T+ W +P+
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNT--WTRLPS 46
|
Length = 49 |
| >gnl|CDD|216228 pfam00989, PAS, PAS fold | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-08
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128
I+YVN E G +EV+G++ D D V +R+ L +G E +
Sbjct: 23 ILYVNAAAEELLGLSREEVIGKS-----LLD----LIPEDDDAEVAELLRQALLQGEESR 73
Query: 129 GELLNFK-KDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
G ++F+ DG P +R +P+RD G V +G+
Sbjct: 74 GFEVSFRVPDGRPRHVEVRASPVRDAGGEVRGFLGV 109
|
The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Length = 113 |
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 53.3 bits (126), Expect = 7e-08
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D D I+Y N E GY +E LGR L + + +R L +
Sbjct: 128 LDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALA-------EG 180
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
G + E +KDG + L DDG + ++GI
Sbjct: 181 RGGPLEIEYRVRRKDGERVRWILSRISPVRDDGEIVGVVGIA 222
|
Length = 232 |
| >gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
D D I+Y N E GY +E++G++ L + + R + + + L
Sbjct: 9 DLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREE---------LRERLENLLSG 59
Query: 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
G E+ +KDG+ + + L PIRD+ G V ++G+
Sbjct: 60 GEPVTLEVRLRRKDGSVIWVLVSLTPIRDEGGEVIGLLGV 99
|
Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. Length = 103 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-07
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471
G K+ V GG D G L+D ++ DL T+ W ++ P R GH+ +V
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNT--WEKLGD--LPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (114), Expect = 2e-06
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D D IIY N+ E GY A+E+LG R + +RR L
Sbjct: 5 LDRDGRIIYANEAAEELLGYSAEELLGLLLALHPEDRDRLREL-----------LRRLLA 53
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170
EL +KDG L AP+RD +G V ++G++ +E K
Sbjct: 54 GEELLSEELRLVRKDGEERWVELSAAPLRDGEGRVLGLLGLRDITERK 101
|
Length = 232 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 371 LVVFGGCG-RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII 418
+ VFGG G LND++V DLD TW ++ G P PR+ H++ +I
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTN--TWEKL--GDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-06
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQN 259
+ L DE+L I S L PRD+ + VCRR R+L ++ + + +C
Sbjct: 1 LSDLPDEILLQ-IFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCLR 47
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-06
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL 366
G ++ +FGG G ++D +V +LD W ++ P R GH + +
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLD--TNTWEKLG--DLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|219844 pfam08447, PAS_3, PAS fold | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-06
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-LEEGIEF 127
IIY + FE GY +E+ + HP V ++ L++G +
Sbjct: 1 IIYWSPRFEEILGYTPEELKSS-------YEGWLDLVHPEDRERVRRALQEFSLKKGEPY 53
Query: 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
GE +KDG R PIRD++G +IG+
Sbjct: 54 SGEYRIRRKDGEYRWVEARGRPIRDENGKPVRVIGV 89
|
The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Length = 90 |
| >gnl|CDD|219845 pfam08448, PAS_4, PAS fold | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
DPD + Y N G +E+LG+ + P R + +RR LE
Sbjct: 11 LDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAAR-------LERALRRALE 61
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
E L +G LRL P+RD DG V ++ I
Sbjct: 62 GE-EPIDFLEELLLNGEERHYELRLTPLRDPDGEVIGVLVI 101
|
The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. Length = 110 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRK 254
+L L D++L ILSRL P+D+ + V +R R L + + K
Sbjct: 3 LLDLPDDLL-LEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 44
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 306 RCNFSACA-AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP 356
R ++ + RL LFGGE + + D +V +L W R+ S P
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLS--TNTWTRLP--SLPS 49
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-05
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 357 GRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQPTWIEVSGGAPPLP 409
R HT +S+ L +FGG G +L+DV+V DL TW + P LP
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTN--TWTRL----PSLP 48
|
Length = 49 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 529 RLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPG 577
A + G++ + GGS GL S L E W L
Sbjct: 1 PRYPHASVVVGGKLYVVGGS-TGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|197509 smart00086, PAC, Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
E +KDG+ + + +PIRD+DG V I+G+
Sbjct: 1 TVEYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVR 38
|
PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold. Length = 43 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 372 VVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS---GGAPPLPRSWHSSCIIEGSKLVVSGG 428
V+ G G G + LDL+A W +++ GG PR + I+G KL V GG
Sbjct: 40 TVYVGLGSAG--TSWYKLDLNAPSKGWTKIAAFPGG----PREQAVAAFIDG-KLYVFGG 92
Query: 429 ---CTDAGV--LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLA 483
G + D Y D T+ W+++ T SP GH K + GG+
Sbjct: 93 IGKTNSEGSPQVFDDVYKYDPKTNS--WQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVN 149
Query: 484 KS 485
K+
Sbjct: 150 KN 151
|
Length = 376 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRK 254
L DE+L ILS+L P+D+ + V R+ R L +
Sbjct: 1 LPDEIL-EEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39
|
Length = 41 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 29/221 (13%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365
R N NR+ + GG ++ V + +WR P R+ + +
Sbjct: 333 RKNPGVTVFNNRIYVIGGIYNSISLNT---VESWKPGESKWREEPPLIFP--RYNPCVVN 387
Query: 366 LNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE-GSKL 423
+N + V GG + LL V L+ + W + S PLP S + C I K+
Sbjct: 388 VNNL-IYVIGGISKNDELLKTVECFSLNTNK--WSKGS----PLPISHYGGCAIYHDGKI 440
Query: 424 VVSGGCTDAGVLLSDTYLL--DLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGG 481
V GG + + + + T+K W E+ + P R+ SL ++ K+ + GG
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFP--RINASLCIFN-NKIYVVGG 495
Query: 482 LAKSGHLRLRSGESYTIDLGDEEPQWK------QLECNAFT 516
+ E Y K LE N FT
Sbjct: 496 D--KYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLEKNIFT 534
|
Length = 534 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 372 VVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD 431
V+ G G G + LDL W +++ P PR+ + KL V GG
Sbjct: 19 KVYVGLGSAG--TSWYKLDLKKPSKGWQKIAD-FPGGPRN-QAVAAAIDGKLYVFGGIGK 74
Query: 432 AGV-----LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKS 485
A + D Y D + W+++ T SP LG S + GG+ K+
Sbjct: 75 ANSEGSPQVFDDVYRYDPKKNS--WQKLDTR-SPVGLLGASGFSLHNGQAYFTGGVNKN 130
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573
PR H + S+ GR+ +FGG S +++ D S W L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNT--WTRL 44
|
Length = 49 |
| >gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 372 VVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD 431
V+ G G G +VLDL W +++ P + + G KL V GG
Sbjct: 48 TVYVGLGSAG--TAFYVLDLKKPGKGWTKIA--DFPGGARNQAVAAVIGGKLYVFGGYGK 103
Query: 432 AGV----LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKS 485
+ + +D Y D +T+ W ++ T SP +G S TK+ FGG+ ++
Sbjct: 104 SVSSSPQVFNDAYRYDPSTNS--WHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQN 158
|
Length = 381 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 93/335 (27%), Positives = 123/335 (36%), Gaps = 63/335 (18%)
Query: 293 WRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDD-TFVLNLDAANPEWRRVSV 351
W K +G RC+ GN++ FGGE QP+D +V +L E R S+
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDL-----ETRTWSI 207
Query: 352 KSSPPGRWGHTLSSLN------GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTW---IEVS 402
SP LS L GS L VFGG N + D + W V
Sbjct: 208 --SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVE 263
Query: 403 GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462
G P PRS+HS E + V G A + D+Y + DK W S
Sbjct: 264 EG--PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNI---VDK--------KWFHCS 310
Query: 463 RLGHSLSVYGRTKVLMFGG--LAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGS 520
G S S+ G + + G G + + D + +W Q+E
Sbjct: 311 TPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYD--PVQDKWTQVE--------- 359
Query: 521 QSAVVPPPRLDHVAVSMPCGR-IIIFGGSIA----GLHSPSQL----FLLDPSEEKPSWR 571
V P R V S G+ I+IFGG IA P QL F LD E W
Sbjct: 360 TFGVRPSER--SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD--TETLQWE 415
Query: 572 ILNVPGQ----PPKFAWGHSTC-VVGGTRVLVLGG 601
L+ G+ P W ST + G + LV+ G
Sbjct: 416 RLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHG 450
|
Length = 470 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 496 YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGS-IAGLHS 554
Y +DL W+++ F G PR VA ++ G++ +FGG A
Sbjct: 32 YKLDLKKPSKGWQKIA--DFPG---------GPRNQAVAAAID-GKLYVFGGIGKANSEG 79
Query: 555 PSQLFL----LDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601
Q+F DP +K SW+ L+ P G S + + GG
Sbjct: 80 SPQVFDDVYRYDP--KKNSWQKLDTR--SPVGLLGASGFSLHNGQAYFTGG 126
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 42/188 (22%)
Query: 311 ACAAGNRLVLFGGEGVN-----MQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365
A +L +FGG G Q DD + D W+++ +S P G GH S
Sbjct: 80 AAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKY--DPKTNSWQKLDTRS-PVGLAGHVAVS 136
Query: 366 LNGSWLVVFGGCGRQ---GLLNDV-----------------------------FVLDLDA 393
L+ + GG + G D+ VL D
Sbjct: 137 LHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP 196
Query: 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE 453
W + G P + S+ +I+G+KL + G G+ T + W++
Sbjct: 197 STNQW--KNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254
Query: 454 IPTSWSPP 461
+P P
Sbjct: 255 LPDLPPAP 262
|
Length = 376 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.97 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.97 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.95 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.88 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.76 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.69 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 99.54 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.46 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.37 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 99.32 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 99.25 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.22 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.22 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 99.21 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.18 | |
| PLN02772 | 398 | guanylate kinase | 99.09 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.02 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.0 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 98.99 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 98.98 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 98.98 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.98 | |
| PRK13557 | 540 | histidine kinase; Provisional | 98.97 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 98.94 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 98.93 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.89 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 98.87 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 98.86 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.85 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 98.8 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.78 | |
| PLN02772 | 398 | guanylate kinase | 98.77 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.77 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.71 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 98.71 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.67 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.66 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.63 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.63 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.59 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.58 | |
| TIGR00229 | 124 | sensory_box PAS domain S-box. The PAS domain was p | 98.52 | |
| cd00130 | 103 | PAS PAS domain; PAS motifs appear in archaea, euba | 98.47 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.42 | |
| PF12860 | 115 | PAS_7: PAS fold | 98.28 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 98.27 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 98.22 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 98.19 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.18 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.14 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.09 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 98.05 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 97.99 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 97.99 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.94 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.85 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.8 | |
| KOG1229 | 775 | consensus 3'5'-cyclic nucleotide phosphodiesterase | 97.75 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.75 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 97.68 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.59 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.48 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 97.29 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.28 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.19 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.13 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.02 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 97.0 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 96.95 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.81 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.7 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.54 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.45 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.45 | |
| COG2202 | 232 | AtoS FOG: PAS/PAC domain [Signal transduction mech | 96.25 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.11 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.07 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 96.0 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 95.95 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 95.87 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 95.86 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 95.8 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.77 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.73 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 95.73 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 95.61 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 95.6 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 95.54 | |
| PF13188 | 64 | PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. | 95.43 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 95.33 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.29 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 95.14 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.97 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.65 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 94.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 94.5 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.43 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 94.38 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.32 | |
| smart00086 | 43 | PAC Motif C-terminal to PAS motifs (likely to cont | 94.2 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 94.14 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.74 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 93.67 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 93.61 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 93.46 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 93.46 | |
| PF08670 | 148 | MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK | 93.46 | |
| TIGR02373 | 124 | photo_yellow photoactive yellow protein. Members o | 92.7 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 92.5 | |
| KOG3753 | 1114 | consensus Circadian clock protein period [Signal t | 92.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 92.05 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 91.98 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 91.45 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 91.35 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 91.17 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 90.9 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 90.7 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 90.57 | |
| smart00091 | 67 | PAS PAS domain. PAS motifs appear in archaea, euba | 90.37 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 90.09 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 89.85 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 89.52 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 88.92 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 88.25 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 88.12 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 87.75 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 87.29 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.77 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 86.6 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 86.43 | |
| PF07310 | 137 | PAS_5: PAS domain; InterPro: IPR009922 This family | 85.71 | |
| KOG3559 | 598 | consensus Transcriptional regulator SIM1 [Transcri | 85.5 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 84.82 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 84.38 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 84.37 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 83.63 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 82.78 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 82.19 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 81.84 | |
| KOG3559 | 598 | consensus Transcriptional regulator SIM1 [Transcri | 81.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 81.07 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 80.97 |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=346.50 Aligned_cols=300 Identities=25% Similarity=0.372 Sum_probs=241.8
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCC-CCCCeEEEeccCCCCceEEcccCC-CCC-CccceeEEEEc
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQ-PMDDTFVLNLDAANPEWRRVSVKS-SPP-GRWGHTLSSLN 367 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~~-~p~-~r~~~~~~~~~ 367 (625)
.+|.++...+..|.+|.+|+++.++++|||+||...... ..+++|+||+.+ ++|..+.... .|. .|.+|+++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~- 227 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSI- 227 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEE-
Confidence 799999877778899999999999999999999854333 457899999988 7999875432 343 3567887777
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC-CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG-APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+++|||+||......++++|+||+.++ +|+.++.+ ..|.+|.+|+++.. +++|||+||..... .+++++.||+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~-~~~~~~~yd~~t 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATA-RLKTLDSYNIVD 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCC-CcceEEEEECCC
Confidence 668999999987777899999999999 99998754 33789999999887 66999999986543 568999999877
Q ss_pred CCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.+ |+.++.. .+|.+|.+|+++++++ ++|++||..... .+++++||+. +.+|+++..+ +..
T Consensus 304 ~~--W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~~-----~~dv~~yD~~--t~~W~~~~~~---------g~~ 364 (470)
T PLN02193 304 KK--WFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGCE-----VDDVHYYDPV--QDKWTQVETF---------GVR 364 (470)
T ss_pred CE--EEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCCc-----cCceEEEECC--CCEEEEeccC---------CCC
Confidence 66 9998753 3567899999998876 999999975421 5899999999 6799999866 456
Q ss_pred CCCccceEEEEecCCEEEEEecCCCC--------CCCCCcEEEEeCCCCCCCeEEEcCCC---CCCCCCCcceE--EEE-
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAG--------LHSPSQLFLLDPSEEKPSWRILNVPG---QPPKFAWGHST--CVV- 591 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~v~~~~---~~p~~r~~~~~--~~~- 591 (625)
|.+|..|+++++ +++|||+||.... ....+++|+||+ .+++|+.+...+ ..|.+|..|++ ..+
T Consensus 365 P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~--~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~ 441 (470)
T PLN02193 365 PSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT--ETLQWERLDKFGEEEETPSSRGWTASTTGTID 441 (470)
T ss_pred CCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEc--CcCEEEEcccCCCCCCCCCCCccccceeeEEc
Confidence 889999999888 8999999997531 123579999999 799999997544 35777766643 233
Q ss_pred CCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 592 GGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 592 ~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.++.|++|||.+..+.+++|+|+|++++
T Consensus 442 ~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 442 GKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCceEEEEcCCCCccccccceEEEecCC
Confidence 3456999999998878899999998875
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=331.83 Aligned_cols=308 Identities=23% Similarity=0.360 Sum_probs=237.4
Q ss_pred ccCeeEEeeec-CCCCCCCcccceEEECCEEEEEcccCCC-CCCCCCeEEEeccCCCCceEEcccCC-CCCC-ccceeEE
Q 048754 289 EAVCWRKFTVR-GAVEPSRCNFSACAAGNRLVLFGGEGVN-MQPMDDTFVLNLDAANPEWRRVSVKS-SPPG-RWGHTLS 364 (625)
Q Consensus 289 ~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~-r~~~~~~ 364 (625)
....|.++... +..|.||.+|++++++++|||+||.... ....+++|+||+.+ ++|.++.... .|.. +.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNT--HTWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCC--CEEEEcCccCCCCCCccCceEEE
Confidence 45779998764 3478899999999999999999998543 33467999999988 7999875332 2332 3467777
Q ss_pred EEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCC-----cee
Q 048754 365 SLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAG-----VLL 436 (625)
Q Consensus 365 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~ 436 (625)
++ +++||+|||......++++++||+.++ +|..++.+ ..|.+|..|+++.. +++|||+||....+ ..+
T Consensus 83 ~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AV-GTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EE-CCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCccc
Confidence 77 568999999977777889999999999 99988754 23789999999887 56999999986432 235
Q ss_pred ceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCC----CCcccccCceEEEEcCCCCCceeEee
Q 048754 437 SDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKS----GHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+++++||+.+++ |+.++... .|.+|.+|+++++++ +||++||.... +......+++++||+. +.+|+++.
T Consensus 159 ~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~ 233 (341)
T PLN02153 159 RTIEAYNIADGK--WVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVE 233 (341)
T ss_pred ceEEEEECCCCe--EeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcC--CCcEEecc
Confidence 789999987766 99998643 457899999988877 99999997532 1111125789999999 77999997
Q ss_pred eccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCCCCCCCeEEEcCCCCC--CC
Q 048754 512 CNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPSEEKPSWRILNVPGQP--PK 581 (625)
Q Consensus 512 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~v~~~~~~--p~ 581 (625)
.. +..|.+|..|+++++ +++|||+||... .....+++|+||+ .+++|+.+...+.+ |.
T Consensus 234 ~~---------g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 234 TT---------GAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECGEPAMPR 301 (341)
T ss_pred cc---------CCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCCCCCCCCC
Confidence 65 456889999999888 899999999742 1223579999999 79999998754444 44
Q ss_pred CCCcceEEEEC-CcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 582 FAWGHSTCVVG-GTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 582 ~r~~~~~~~~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
.+..++++.+. +++||||||.++.+..++|+|.|+..+
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCCccccceEEEeccc
Confidence 45445555444 469999999988777899999998754
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=278.61 Aligned_cols=302 Identities=28% Similarity=0.484 Sum_probs=241.2
Q ss_pred eeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCC----CCCeEEEeccCCCCceEEcccC-----------CCCC
Q 048754 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQP----MDDTFVLNLDAANPEWRRVSVK-----------SSPP 356 (625)
Q Consensus 292 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----~~~~~~~~~~~~~~~W~~~~~~-----------~~p~ 356 (625)
.|..-- +--|.|..|+++.+++.||-|||+.....+ --|+.++|..+ .+|.++++. ..|-
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~--~RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAEN--YRWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccc--eeEEecCcccccccccCCCCccch
Confidence 465543 334569999999999999999998544221 22578888777 899998641 1245
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCC-C
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDA-G 433 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~ 433 (625)
.|++|+.+.+. +++||.||.+. .+..|-+|.||++++ +|.+.. .+..|.+|.+|++|++ ++.+|||||+.+. .
T Consensus 78 qRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~--~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 78 QRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETN--VWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQ 153 (392)
T ss_pred hhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccc--cccccceeeecCCccCCceeeEE-CcEEEEecChHHHHH
Confidence 69999999985 48999999975 678899999999999 999665 4577999999999999 7799999998654 4
Q ss_pred ceeceEEEEecCCCCCceEEcCCCCC-CCCCCcceEEEECCcEEEEEcCCcCCCC-----cccccCceEEEEcCCCCCce
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSWS-PPSRLGHSLSVYGRTKVLMFGGLAKSGH-----LRLRSGESYTIDLGDEEPQW 507 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~~-----~~~~~~~~~~~d~~~~~~~W 507 (625)
..+++++++|+++-+ |..+...+. |.-|..|+++++++ .+|||||..+... -..+.+.+..+|+. +..|
T Consensus 154 ~FS~d~h~ld~~Tmt--Wr~~~Tkg~PprwRDFH~a~~~~~-~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW 228 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMT--WREMHTKGDPPRWRDFHTASVIDG-MMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAW 228 (392)
T ss_pred hhhccceeEecccee--eeehhccCCCchhhhhhhhhhccc-eEEEeccccccCCCccchhhhhcceeEEEecc--cccc
Confidence 578899999987755 999987554 45688899999986 9999999875321 12345788889999 6699
Q ss_pred eEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC-CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcc
Q 048754 508 KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH-SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGH 586 (625)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~ 586 (625)
...... +..|..|..|++.+. +++||||||++..-. -++|+|+||+ .+..|+.+...|..|.+|..+
T Consensus 229 ~r~p~~---------~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRq 296 (392)
T KOG4693|consen 229 TRTPEN---------TMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQ 296 (392)
T ss_pred ccCCCC---------CcCCCcccccceEEE-cceEEEecccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccce
Confidence 987655 467899999999999 999999999975322 3799999999 799999999999999999999
Q ss_pred eEEEECCcEEEEEcCcCCC-----------C-------CccCceEEEEccCC
Q 048754 587 STCVVGGTRVLVLGGHTGE-----------E-------WVLNELHELCLASK 620 (625)
Q Consensus 587 ~~~~~~~~~i~i~GG~~~~-----------~-------~~~~d~~~~~~~~~ 620 (625)
++++.++ ++|+|||..+. + --++|+.+||..++
T Consensus 297 C~~v~g~-kv~LFGGTsP~~~~~~Spt~~~G~~~~~~LiD~SDLHvLDF~Ps 347 (392)
T KOG4693|consen 297 CSVVSGG-KVYLFGGTSPLPCHPLSPTNYNGMISPSGLIDLSDLHVLDFAPS 347 (392)
T ss_pred eEEEECC-EEEEecCCCCCCCCCCCccccCCCCCcccccccccceeeecChh
Confidence 9999985 99999997651 0 02678888887654
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=294.63 Aligned_cols=286 Identities=17% Similarity=0.261 Sum_probs=213.9
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCCEEEEEccCCC
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGSWLVVFGGCGR 379 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~ 379 (625)
++|.+|..+++++++++|||+||... +++|+||+....++|.++ +++| .+|..|+++++ +++|||+||...
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l--~~~p~~~R~~~~~~~~-~~~iYv~GG~~~ 74 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKI--ADFPGGPRNQAVAAAI-DGKLYVFGGIGK 74 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceEC--CCCCCCCcccceEEEE-CCEEEEEeCCCC
Confidence 57778998888899999999999732 568999986555799987 6677 58998888877 568999999853
Q ss_pred C------CccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC--------------------
Q 048754 380 Q------GLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-------------------- 433 (625)
Q Consensus 380 ~------~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-------------------- 433 (625)
. ..++++|+||+.++ +|++++. ..|.+|.+|+++...+++||++||.....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~--~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKN--SWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCcceecccEEEEECCCC--EEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 2 24789999999999 9999974 33677888877733367999999975320
Q ss_pred -------------ceeceEEEEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 434 -------------VLLSDTYLLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 434 -------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
..++++++||+.+++ |+.++. +|. +|.+|+++++++ +||++||....+. ...+++.|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~--W~~~~~--~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~y~ 223 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQ--WRNLGE--NPFLGTAGSAIVHKGN-KLLLINGEIKPGL---RTAEVKQYL 223 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCc--eeECcc--CCCCcCCCceEEEECC-EEEEEeeeeCCCc---cchheEEEE
Confidence 014789999987766 999975 664 688888888876 9999999864332 235677787
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC----------------CCCcEEEEeC
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH----------------SPSQLFLLDP 563 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~----------------~~~~v~~~d~ 563 (625)
++.++++|+.++.++... ...+..+.+|+++++ +++|||+||.+.... ....+.+||+
T Consensus 224 ~~~~~~~W~~~~~m~~~r-----~~~~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 224 FTGGKLEWNKLPPLPPPK-----SSSQEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred ecCCCceeeecCCCCCCC-----CCccccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Confidence 754467999998772000 000112345556666 999999999753110 1235789999
Q ss_pred CCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 564 SEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 564 ~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
++++|+.+. .+|.+|..+++++++ ++|||+||.+..+..++||+.|.+
T Consensus 298 --~~~~W~~~~---~lp~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 298 --DNGKWSKVG---KLPQGLAYGVSVSWN-NGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred --cCCcccccC---CCCCCceeeEEEEcC-CEEEEEeccCCCCCEeeeEEEEEe
Confidence 688999885 678888777766665 699999999988888999998876
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=308.15 Aligned_cols=289 Identities=21% Similarity=0.298 Sum_probs=243.2
Q ss_pred eeEEeeecCC-CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 292 CWRKFTVRGA-VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 292 ~W~~~~~~~~-~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
.|..++...+ .+.+|..... ...+.||++||........+.+.+||+.+ +.|..+ .++|.+|..++++++ +++
T Consensus 261 ~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~--~~w~~~--a~m~~~r~~~~~~~~-~~~ 334 (571)
T KOG4441|consen 261 KYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKT--NEWSSL--APMPSPRCRVGVAVL-NGK 334 (571)
T ss_pred HHhhCcccCccccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCc--CcEeec--CCCCcccccccEEEE-CCE
Confidence 4555443221 3333433332 45688999999976567788899999998 689977 788899998888888 569
Q ss_pred EEEEccCC-CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC
Q 048754 371 LVVFGGCG-RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449 (625)
Q Consensus 371 iyv~GG~~-~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 449 (625)
||++||.+ +...++++|+||+.++ +|.++++| +.+|.+++.+++ ++.||++||.+ +...++++++||+.++.
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~--~W~~~a~M--~~~R~~~~v~~l-~g~iYavGG~d-g~~~l~svE~YDp~~~~- 407 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTN--QWTPVAPM--NTKRSDFGVAVL-DGKLYAVGGFD-GEKSLNSVECYDPVTNK- 407 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCC--ceeccCCc--cCccccceeEEE-CCEEEEEeccc-cccccccEEEecCCCCc-
Confidence 99999999 6778999999999999 89999988 889999999999 55999999987 44578999999987766
Q ss_pred ceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 450 MWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 450 ~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
|+.+++ ++.+|++|+++++++ +||++||.+.... .++.+..||+. +++|+.++++ +.+|
T Consensus 408 -W~~va~--m~~~r~~~gv~~~~g-~iYi~GG~~~~~~---~l~sve~YDP~--t~~W~~~~~M------------~~~R 466 (571)
T KOG4441|consen 408 -WTPVAP--MLTRRSGHGVAVLGG-KLYIIGGGDGSSN---CLNSVECYDPE--TNTWTLIAPM------------NTRR 466 (571)
T ss_pred -ccccCC--CCcceeeeEEEEECC-EEEEEcCcCCCcc---ccceEEEEcCC--CCceeecCCc------------cccc
Confidence 999987 777999999999987 9999999887663 26999999999 7799999987 8899
Q ss_pred cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCcc
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
.++.++++ +++||++||.+. ......+.+||+ .+++|+.+. .++.+|..+++++.+ +++|++||+++.. ++
T Consensus 467 ~~~g~a~~-~~~iYvvGG~~~-~~~~~~VE~ydp--~~~~W~~v~---~m~~~rs~~g~~~~~-~~ly~vGG~~~~~-~l 537 (571)
T KOG4441|consen 467 SGFGVAVL-NGKIYVVGGFDG-TSALSSVERYDP--ETNQWTMVA---PMTSPRSAVGVVVLG-GKLYAVGGFDGNN-NL 537 (571)
T ss_pred ccceEEEE-CCEEEEECCccC-CCccceEEEEcC--CCCceeEcc---cCccccccccEEEEC-CEEEEEecccCcc-cc
Confidence 99998888 999999999987 445677999999 799999994 677788888888887 5999999988876 59
Q ss_pred CceEEEEccCCCCC
Q 048754 610 NELHELCLASKQDS 623 (625)
Q Consensus 610 ~d~~~~~~~~~~~~ 623 (625)
+.+..||+.+++|.
T Consensus 538 ~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 538 NTVECYDPETDTWT 551 (571)
T ss_pred ceeEEcCCCCCcee
Confidence 99999999999875
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=306.71 Aligned_cols=267 Identities=21% Similarity=0.318 Sum_probs=231.4
Q ss_pred cceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc
Q 048754 281 LARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG 360 (625)
Q Consensus 281 ~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~ 360 (625)
...+.||+.++.|..+. ++|.+|..+++++++++||+.||++.....++++++||+.. ++|..+ ++|+.+|.+
T Consensus 301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~--a~M~~~R~~ 373 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPV--APMNTKRSD 373 (571)
T ss_pred ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCC--Cceecc--CCccCcccc
Confidence 44667999999999998 78899999999999999999999975556789999999998 799986 889999999
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
++++++ ++.||++||+++...++++++||+.++ +|..+++| +.+|++|+++++ +++||++||.......+++++
T Consensus 374 ~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m--~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 374 FGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM--LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred ceeEEE-CCEEEEEeccccccccccEEEecCCCC--cccccCCC--CcceeeeEEEEE-CCEEEEEcCcCCCccccceEE
Confidence 999999 558999999999999999999999999 99999988 669999999999 559999999877766899999
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCC
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGS 520 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~ 520 (625)
+|||.+++ |+.+++ ++.+|.+++++++++ +||++||++.... ...+..||+. +++|+.+..+
T Consensus 448 ~YDP~t~~--W~~~~~--M~~~R~~~g~a~~~~-~iYvvGG~~~~~~----~~~VE~ydp~--~~~W~~v~~m------- 509 (571)
T KOG4441|consen 448 CYDPETNT--WTLIAP--MNTRRSGFGVAVLNG-KIYVVGGFDGTSA----LSSVERYDPE--TNQWTMVAPM------- 509 (571)
T ss_pred EEcCCCCc--eeecCC--cccccccceEEEECC-EEEEECCccCCCc----cceEEEEcCC--CCceeEcccC-------
Confidence 99988877 999987 899999999999988 9999999988433 4679999999 7799999766
Q ss_pred CCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEE
Q 048754 521 QSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCV 590 (625)
Q Consensus 521 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~ 590 (625)
+.+|..+.+++. ++++|++||.+. ....+.+..||+ .+++|+.+. .+...+.+.++++
T Consensus 510 -----~~~rs~~g~~~~-~~~ly~vGG~~~-~~~l~~ve~ydp--~~d~W~~~~---~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 510 -----TSPRSAVGVVVL-GGKLYAVGGFDG-NNNLNTVECYDP--ETDTWTEVT---EPESGRGGAGVAV 567 (571)
T ss_pred -----ccccccccEEEE-CCEEEEEecccC-ccccceeEEcCC--CCCceeeCC---CccccccCcceEE
Confidence 788888888888 999999999754 445899999999 799999985 3444444444443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=285.65 Aligned_cols=275 Identities=16% Similarity=0.307 Sum_probs=211.4
Q ss_pred CCCcccceEEECCEEEEEcccCCCC---------CCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEE
Q 048754 304 PSRCNFSACAAGNRLVLFGGEGVNM---------QPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVF 374 (625)
Q Consensus 304 ~~r~~~~~~~~~~~lyv~GG~~~~~---------~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~ 374 (625)
..+.++.++++++.|||+||++.+. ..++++++|+....+.+|..+ +++|.+|..++++++ +++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~--~~lp~~r~~~~~~~~-~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKD--GQLPYEAAYGASVSV-ENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEc--ccCCccccceEEEEE-CCEEEEE
Confidence 4578889999999999999986543 245689988733323479876 678888988877777 6689999
Q ss_pred ccCCCCCccccEEEEECCCCCCEE----EEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 375 GGCGRQGLLNDVFVLDLDAKQPTW----IEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 375 GG~~~~~~~~~~~~~d~~t~~~~W----~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
||......++++++||+.++ +| ..++++ |.+|..|+++++ +++|||+||... +..++++++||+.+++
T Consensus 79 GG~~~~~~~~~v~~~d~~~~--~w~~~~~~~~~l--p~~~~~~~~~~~-~~~iYv~GG~~~-~~~~~~v~~yd~~~~~-- 150 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDES--KEELICETIGNL--PFTFENGSACYK-DGTLYVGGGNRN-GKPSNKSYLFNLETQE-- 150 (323)
T ss_pred cCCCCCCCceeEEEEEEcCC--ceeeeeeEcCCC--CcCccCceEEEE-CCEEEEEeCcCC-CccCceEEEEcCCCCC--
Confidence 99987777899999999988 65 677766 888999999888 569999999753 3457899999987766
Q ss_pred eEEcCCCCCC-CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc
Q 048754 451 WREIPTSWSP-PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR 529 (625)
Q Consensus 451 W~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r 529 (625)
|+.++. +| .+|..|+++++++ +||++||.+... ..++++||+. +.+|+.++.++ .+..|..+
T Consensus 151 W~~~~~--~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-----~~~~~~yd~~--~~~W~~~~~~~-------~~~~p~~~ 213 (323)
T TIGR03548 151 WFELPD--FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-----YTDGYKYSPK--KNQWQKVADPT-------TDSEPISL 213 (323)
T ss_pred eeECCC--CCCCCCCcceEEEECC-EEEEEcCCCCcc-----ccceEEEecC--CCeeEECCCCC-------CCCCceec
Confidence 999875 55 4788888888876 999999986432 3578999999 67999997651 11234445
Q ss_pred cceEEEEecCCEEEEEecCCCCC-------------------------------CCCCcEEEEeCCCCCCCeEEEcCCCC
Q 048754 530 LDHVAVSMPCGRIIIFGGSIAGL-------------------------------HSPSQLFLLDPSEEKPSWRILNVPGQ 578 (625)
Q Consensus 530 ~~~~~~~~~~~~l~v~GG~~~~~-------------------------------~~~~~v~~~d~~~~~~~W~~v~~~~~ 578 (625)
..++++++.+++|||+||.+... ...+++++||+ .+++|+.+. .
T Consensus 214 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~---~ 288 (323)
T TIGR03548 214 LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV--RTGKWKSIG---N 288 (323)
T ss_pred cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC--CCCeeeEcc---c
Confidence 56666666588999999986321 11368999999 789999985 3
Q ss_pred CC-CCCCcceEEEECCcEEEEEcCcCCCCCccCce
Q 048754 579 PP-KFAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 612 (625)
Q Consensus 579 ~p-~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~ 612 (625)
+| .+|.+++++++++ +||++||....+.+..++
T Consensus 289 ~p~~~r~~~~~~~~~~-~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 289 SPFFARCGAALLLTGN-NIFSINGELKPGVRTPDI 322 (323)
T ss_pred ccccccCchheEEECC-EEEEEeccccCCcCCcCc
Confidence 44 5788898888874 999999987766555554
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=295.57 Aligned_cols=282 Identities=20% Similarity=0.294 Sum_probs=220.7
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEE--eccCC--CCceEEcccC-CCCCCccceeEEEEcCCEEEEEccCCC-C-Ccc
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVL--NLDAA--NPEWRRVSVK-SSPPGRWGHTLSSLNGSWLVVFGGCGR-Q-GLL 383 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~--~~~~~--~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~-~-~~~ 383 (625)
.++.+++|+.|+|.... .++.+-+| ++.+. .++|.++... .+|.+|.+|+++++ +++|||+||... . ...
T Consensus 116 f~~~~~~ivgf~G~~~~--~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~ 192 (470)
T PLN02193 116 FVLQGGKIVGFHGRSTD--VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPID 192 (470)
T ss_pred EEEcCCeEEEEeccCCC--cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCee
Confidence 34458999999997543 34444444 54331 2689998643 36889999999988 568999999753 2 245
Q ss_pred ccEEEEECCCCCCEEEEcCCC-CCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGG-APPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSP 460 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~-~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p 460 (625)
+++|+||+.++ +|..++.+ ..|. .|.+|+++.+ +++||||||.... ..++++|+||+.+++ |+++++. ..|
T Consensus 193 ~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~-~~~ndv~~yD~~t~~--W~~l~~~~~~P 266 (470)
T PLN02193 193 KHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDAS-RQYNGFYSFDTTTNE--WKLLTPVEEGP 266 (470)
T ss_pred CcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCC-CCCccEEEEECCCCE--EEEcCcCCCCC
Confidence 78999999999 99987653 2343 4678888888 6699999997644 367899999987765 9998752 237
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
.+|+.|+++++++ +||++||...... .++++.||+. +.+|+.++.. +..|.+|.+|+++++ ++
T Consensus 267 ~~R~~h~~~~~~~-~iYv~GG~~~~~~----~~~~~~yd~~--t~~W~~~~~~---------~~~~~~R~~~~~~~~-~g 329 (470)
T PLN02193 267 TPRSFHSMAADEE-NVYVFGGVSATAR----LKTLDSYNIV--DKKWFHCSTP---------GDSFSIRGGAGLEVV-QG 329 (470)
T ss_pred CCccceEEEEECC-EEEEECCCCCCCC----cceEEEEECC--CCEEEeCCCC---------CCCCCCCCCcEEEEE-CC
Confidence 8999999988876 9999999875443 4889999999 6799998754 345788999988888 89
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCce
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNEL 612 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~ 612 (625)
+|||+||.+. ...+++++||+ .+++|+.+...+..|.+|..|++++++ ++||||||... ...+.+|+
T Consensus 330 kiyviGG~~g--~~~~dv~~yD~--~t~~W~~~~~~g~~P~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~ndv 404 (470)
T PLN02193 330 KVWVVYGFNG--CEVDDVHYYDP--VQDKWTQVETFGVRPSERSVFASAAVG-KHIVIFGGEIAMDPLAHVGPGQLTDGT 404 (470)
T ss_pred cEEEEECCCC--CccCceEEEEC--CCCEEEEeccCCCCCCCcceeEEEEEC-CEEEEECCccCCccccccCccceeccE
Confidence 9999999753 23689999999 799999998777788999999998887 59999999864 12467899
Q ss_pred EEEEccCCCCC
Q 048754 613 HELCLASKQDS 623 (625)
Q Consensus 613 ~~~~~~~~~~~ 623 (625)
|.||+.+.++.
T Consensus 405 ~~~D~~t~~W~ 415 (470)
T PLN02193 405 FALDTETLQWE 415 (470)
T ss_pred EEEEcCcCEEE
Confidence 99999988765
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=290.70 Aligned_cols=289 Identities=18% Similarity=0.289 Sum_probs=215.9
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCC
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGS 369 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~ 369 (625)
..++.++ ++|.+|..+++++++++|||+||... +.+|+||+....++|..+ +++| .+|.+|+++++ ++
T Consensus 17 ~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l--~~~p~~~r~~~~~v~~-~~ 85 (376)
T PRK14131 17 ANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKI--AAFPGGPREQAVAAFI-DG 85 (376)
T ss_pred eecccCC---CCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEEC--CcCCCCCcccceEEEE-CC
Confidence 3456665 68888888889999999999999733 348999997655789987 4555 47888888877 56
Q ss_pred EEEEEccCCC------CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC----------
Q 048754 370 WLVVFGGCGR------QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG---------- 433 (625)
Q Consensus 370 ~iyv~GG~~~------~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---------- 433 (625)
+|||+||... ...++++|+||+.++ +|..++. ..|.++.+|+++++.+++||++||.....
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~-~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~ 162 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT-RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAA 162 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC-CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhh
Confidence 8999999864 134689999999999 9999985 23677888888774467999999975310
Q ss_pred -----------------------ceeceEEEEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcc
Q 048754 434 -----------------------VLLSDTYLLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLR 489 (625)
Q Consensus 434 -----------------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~ 489 (625)
..++++++||+.+++ |+.++. +|. +|.+|+++++++ +||++||....+.
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~--W~~~~~--~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~-- 235 (376)
T PRK14131 163 AGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQ--WKNAGE--SPFLGTAGSAVVIKGN-KLWLINGEIKPGL-- 235 (376)
T ss_pred cccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCe--eeECCc--CCCCCCCcceEEEECC-EEEEEeeeECCCc--
Confidence 124789999987766 999875 664 678888877776 9999999754432
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc--------ceEEEEecCCEEEEEecCCCCCC--------
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL--------DHVAVSMPCGRIIIFGGSIAGLH-------- 553 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~--------~~~~~~~~~~~l~v~GG~~~~~~-------- 553 (625)
...+++.|+++.++.+|+.+..+ |.+|. .+.++++ +++|||+||.+....
T Consensus 236 -~~~~~~~~~~~~~~~~W~~~~~~------------p~~~~~~~~~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~ 301 (376)
T PRK14131 236 -RTDAVKQGKFTGNNLKWQKLPDL------------PPAPGGSSQEGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGK 301 (376)
T ss_pred -CChhheEEEecCCCcceeecCCC------------CCCCcCCcCCccceEeceeE-CCEEEEeeccCCCCChhhhhcCC
Confidence 24667766554347799999876 33332 2224445 899999999753211
Q ss_pred -----C---CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 -----S---PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 -----~---~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
. ...+.+||+ ++++|+.+. .+|.+|.++++++++ ++|||+||....+..+++|++|++..+
T Consensus 302 ~~~~~~~~~~~~~e~yd~--~~~~W~~~~---~lp~~r~~~~av~~~-~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 302 LYAHEGLKKSWSDEIYAL--VNGKWQKVG---ELPQGLAYGVSVSWN-NGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred cccccCCcceeehheEEe--cCCcccccC---cCCCCccceEEEEeC-CEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 0 124568999 689999874 778899888877776 599999998876667999999998754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=304.54 Aligned_cols=250 Identities=9% Similarity=0.184 Sum_probs=212.4
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcccee
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~ 362 (625)
...||+.+.+|..++ ++|.+|.++++++++++||++||.......++++++||+.+ ++|..+ +++|.+|.+++
T Consensus 274 v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~--~~m~~~R~~~~ 346 (557)
T PHA02713 274 ILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVEL--PPMIKNRCRFS 346 (557)
T ss_pred EEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeC--CCCcchhhcee
Confidence 456899999999987 68888999999999999999999854445678899999988 799977 78899999999
Q ss_pred EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---------
Q 048754 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG--------- 433 (625)
Q Consensus 363 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------- 433 (625)
++++ +++||++||..+...++++++||+.++ +|..++++ |.+|.+|+++++ +++||++||.+...
T Consensus 347 ~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m--p~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 347 LAVI-DDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM--PIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred EEEE-CCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCC--CcccccccEEEE-CCEEEEEeCCCcccccccccccc
Confidence 9888 568999999976667889999999999 99999987 889999999888 56999999976421
Q ss_pred --------ceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCC-
Q 048754 434 --------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEE- 504 (625)
Q Consensus 434 --------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~- 504 (625)
..++++++|||.+++ |+.+++ ++.+|..++++++++ +||++||.+..... .+.+.+||++ +
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~--W~~v~~--m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~---~~~ve~Ydp~--~~ 490 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNI--WETLPN--FWTGTIRPGVVSHKD-DIYVVCDIKDEKNV---KTCIFRYNTN--TY 490 (557)
T ss_pred cccccccccccceEEEECCCCCe--EeecCC--CCcccccCcEEEECC-EEEEEeCCCCCCcc---ceeEEEecCC--CC
Confidence 125789999987766 999986 888999999999987 99999998643321 2467899999 6
Q ss_pred CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 505 PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 505 ~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
++|+.++++ |.+|..+.++++ +++||++||.++ ...+.+||+ .+++|+.+.
T Consensus 491 ~~W~~~~~m------------~~~r~~~~~~~~-~~~iyv~Gg~~~----~~~~e~yd~--~~~~W~~~~ 541 (557)
T PHA02713 491 NGWELITTT------------ESRLSALHTILH-DNTIMMLHCYES----YMLQDTFNV--YTYEWNHIC 541 (557)
T ss_pred CCeeEcccc------------CcccccceeEEE-CCEEEEEeeecc----eeehhhcCc--ccccccchh
Confidence 699999877 889999999988 999999999864 247889999 799999885
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=272.66 Aligned_cols=257 Identities=27% Similarity=0.449 Sum_probs=219.1
Q ss_pred CCCCCCccceeEEEEc-CCEEEEEccCC--C--CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEE
Q 048754 352 KSSPPGRWGHTLSSLN-GSWLVVFGGCG--R--QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVS 426 (625)
Q Consensus 352 ~~~p~~r~~~~~~~~~-~~~iyv~GG~~--~--~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~ 426 (625)
-++|.||.++++++-. .+.+++|||.- + ...+||+|.||+.++ .|.++..+..|.||++|.++++..+.+|+|
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~--eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKN--EWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEecccc--ceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 3578889999888742 34799999972 2 226899999999999 999998888899999999999987899999
Q ss_pred cCcCCCCc-----eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 427 GGCTDAGV-----LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 427 GG~~~~~~-----~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
||.-.+.. ...++|+||+.+++ |+++..++.|.+|.+|.|++..+ +|+||||+......-.+++++|+||++
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~g~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFGGGPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLD 215 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccch--heeeccCCCCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEecc
Confidence 99754321 34799999998877 99999888999999999999987 999999998776655679999999999
Q ss_pred CCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCC---CCCCCe
Q 048754 502 DEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPS---EEKPSW 570 (625)
Q Consensus 502 ~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~---~~~~~W 570 (625)
+.+|+++.+. |..|.||++++..+...+.|||.||++. .+...+|+|.+++. .++..|
T Consensus 216 --tykW~Kleps---------ga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 216 --TYKWSKLEPS---------GAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVW 284 (521)
T ss_pred --ceeeeeccCC---------CCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeE
Confidence 8999999875 5689999999999998999999999963 23347899999994 134889
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCceEEEEccCCCCCC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNELHELCLASKQDSD 624 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~~~~~~~~~~~~~ 624 (625)
+++.+.|..|.+|.+.++++..+++-+.|||... .+.|+||+|.|+++.+.+++
T Consensus 285 ~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 285 TKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred eeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 9999999999999999999999889999999654 13589999999999888765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=296.88 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=214.3
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCC-CCCccccEEEEECCCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCG-RQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~t~~ 395 (625)
.|++.||.. ......+++||+.+ ++|..+ +++|.+|.+|+++++ +++||++||.. .....+++++||+.++
T Consensus 259 ~l~~~~g~~--~~~~~~v~~yd~~~--~~W~~l--~~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n- 330 (557)
T PHA02713 259 CLVCHDTKY--NVCNPCILVYNINT--MEYSVI--STIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENK- 330 (557)
T ss_pred EEEEecCcc--ccCCCCEEEEeCCC--CeEEEC--CCCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCC-
Confidence 355555521 12334689999988 799987 678888998888877 66899999985 3345789999999999
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
+|..++++ |.+|..|+++++ +++||++||.... ..++++++||+.+++ |+.+++ +|.+|.+++++++++ +
T Consensus 331 -~W~~~~~m--~~~R~~~~~~~~-~g~IYviGG~~~~-~~~~sve~Ydp~~~~--W~~~~~--mp~~r~~~~~~~~~g-~ 400 (557)
T PHA02713 331 -IHVELPPM--IKNRCRFSLAVI-DDTIYAIGGQNGT-NVERTIECYTMGDDK--WKMLPD--MPIALSSYGMCVLDQ-Y 400 (557)
T ss_pred -eEeeCCCC--cchhhceeEEEE-CCEEEEECCcCCC-CCCceEEEEECCCCe--EEECCC--CCcccccccEEEECC-E
Confidence 99999988 889999999888 5599999997543 357889999987766 999986 899999999999877 9
Q ss_pred EEEEcCCcCCCCc--------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCE
Q 048754 476 VLMFGGLAKSGHL--------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541 (625)
Q Consensus 476 l~v~GG~~~~~~~--------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 541 (625)
||++||.+..... ...++.+++||+. +.+|+.++++ +.+|..++++++ +++
T Consensus 401 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m------------~~~r~~~~~~~~-~~~ 465 (557)
T PHA02713 401 IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNF------------WTGTIRPGVVSH-KDD 465 (557)
T ss_pred EEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCC------------CcccccCcEEEE-CCE
Confidence 9999998643210 0124789999999 6799999876 788998888888 999
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCC-CCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEK-PSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~-~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
|||+||.+......+.+++||+ ++ ++|+.+. .+|.+|..++++++++ +||++||+++. ..+.+||+.++
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~~---~m~~~r~~~~~~~~~~-~iyv~Gg~~~~----~~~e~yd~~~~ 535 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNT--NTYNGWELIT---TTESRLSALHTILHDN-TIMMLHCYESY----MLQDTFNVYTY 535 (557)
T ss_pred EEEEeCCCCCCccceeEEEecC--CCCCCeeEcc---ccCcccccceeEEECC-EEEEEeeecce----eehhhcCcccc
Confidence 9999998643333456899999 67 7999985 7889999999999974 99999999873 47889999999
Q ss_pred CCC
Q 048754 621 QDS 623 (625)
Q Consensus 621 ~~~ 623 (625)
+|.
T Consensus 536 ~W~ 538 (557)
T PHA02713 536 EWN 538 (557)
T ss_pred ccc
Confidence 886
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=289.34 Aligned_cols=297 Identities=33% Similarity=0.561 Sum_probs=244.3
Q ss_pred ecCCCCCCCcccceEEECCEEEEEcccCCCCCCCC-CeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEc
Q 048754 298 VRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMD-DTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFG 375 (625)
Q Consensus 298 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~G 375 (625)
..+..|.+|.+|+++.+++++|||||........+ |+|++|+.+ ..|....+.+ .|.+|++|+++++ +++||+||
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfG 129 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFG 129 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEE-CCeEEEEc
Confidence 45678889999999999999999999877654444 699999998 6898876554 5779999999999 56899999
Q ss_pred cCCC-CCccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE
Q 048754 376 GCGR-QGLLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE 453 (625)
Q Consensus 376 G~~~-~~~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~ 453 (625)
|... ...+++++.||+.|+ +|..+.. ..+|.+|.+|+++.+ ++++|||||....+...+++|+||+.+.+ |.+
T Consensus 130 G~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~--W~~ 204 (482)
T KOG0379|consen 130 GTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETST--WSE 204 (482)
T ss_pred cccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcccceeeeeeecccccc--cee
Confidence 9974 556889999999999 9997753 345899999999988 57999999998777789999999987766 999
Q ss_pred cCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce
Q 048754 454 IPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH 532 (625)
Q Consensus 454 ~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~ 532 (625)
+... ..|.||++|+++++++ +++|+||...... .++++|.||+. +.+|.++... +..|.+|++|
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~-~~~v~gG~~~~~~---~l~D~~~ldl~--~~~W~~~~~~---------g~~p~~R~~h 269 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGN-KLLVFGGGDDGDV---YLNDVHILDLS--TWEWKLLPTG---------GDLPSPRSGH 269 (482)
T ss_pred cccCCCCCCCCCCceEEEECC-eEEEEeccccCCc---eecceEeeecc--cceeeecccc---------CCCCCCccee
Confidence 9764 3678999999999988 8888888873333 37999999999 6899977665 6889999999
Q ss_pred EEEEecCCEEEEEecCCCCCC-CCCcEEEEeCCCCCCCeEEEcCCC-CCCCCCCcceEEEECC---cEEEEEcCcCCCCC
Q 048754 533 VAVSMPCGRIIIFGGSIAGLH-SPSQLFLLDPSEEKPSWRILNVPG-QPPKFAWGHSTCVVGG---TRVLVLGGHTGEEW 607 (625)
Q Consensus 533 ~~~~~~~~~l~v~GG~~~~~~-~~~~v~~~d~~~~~~~W~~v~~~~-~~p~~r~~~~~~~~~~---~~i~i~GG~~~~~~ 607 (625)
+.+.. +++++|+||...... .+.++|.|++ .+..|.++...+ ..|.++..|+.+.... ..+.++||......
T Consensus 270 ~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (482)
T KOG0379|consen 270 SLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDL--ETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGE 346 (482)
T ss_pred eeEEE-CCEEEEEcCCcccccccccccccccc--cccceeeeeccccccccccccccceeeccCCccceeeecCcccccc
Confidence 99955 999999999876533 5899999999 699999999777 6788888888877753 45667777665555
Q ss_pred ccCceEEEEccCC
Q 048754 608 VLNELHELCLASK 620 (625)
Q Consensus 608 ~~~d~~~~~~~~~ 620 (625)
..++++.+.....
T Consensus 347 ~~~~~~~~~~~~~ 359 (482)
T KOG0379|consen 347 RLADVFSLQIKLL 359 (482)
T ss_pred chhhccccccccc
Confidence 6777776665443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=277.67 Aligned_cols=257 Identities=23% Similarity=0.339 Sum_probs=200.7
Q ss_pred CceEEcccCC--CCCCccceeEEEEcCCEEEEEccCCC--CCccccEEEEECCCCCCEEEEcCCCC-CCC-CCccceEEE
Q 048754 344 PEWRRVSVKS--SPPGRWGHTLSSLNGSWLVVFGGCGR--QGLLNDVFVLDLDAKQPTWIEVSGGA-PPL-PRSWHSSCI 417 (625)
Q Consensus 344 ~~W~~~~~~~--~p~~r~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~-~r~~~~~~~ 417 (625)
.+|.++.... +|.+|.+|+++++ +++|||+||... ....+++|+||+.++ +|..++.+. .|. .+.+|++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEE-CCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEE
Confidence 5799886532 6889999999887 568999999853 234689999999999 999987642 233 244788877
Q ss_pred EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCc--cccc
Q 048754 418 IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL--RLRS 492 (625)
Q Consensus 418 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~ 492 (625)
+ +++||||||..... .++++++||+.+++ |+.++.. ..|.+|..|+++++++ +|||+||....+.. ...+
T Consensus 84 ~-~~~iyv~GG~~~~~-~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 84 V-GTKLYIFGGRDEKR-EFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred E-CCEEEEECCCCCCC-ccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCccc
Confidence 8 56999999986543 56899999987655 9988642 2378999999988877 99999998753311 1124
Q ss_pred CceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-------CCCCCcEEEEeCCC
Q 048754 493 GESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-------LHSPSQLFLLDPSE 565 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-------~~~~~~v~~~d~~~ 565 (625)
+++++||++ +.+|+.++.+ +..|.+|.+|+++++ +++|||+||.... ....+++++||+
T Consensus 159 ~~v~~yd~~--~~~W~~l~~~---------~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~-- 224 (341)
T PLN02153 159 RTIEAYNIA--DGKWVQLPDP---------GENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDP-- 224 (341)
T ss_pred ceEEEEECC--CCeEeeCCCC---------CCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEc--
Confidence 789999999 6799998765 345678999988887 8999999997421 122579999999
Q ss_pred CCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC--------CCCccCceEEEEccCCCCC
Q 048754 566 EKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG--------EEWVLNELHELCLASKQDS 623 (625)
Q Consensus 566 ~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~--------~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++|+++...+..|.+|..|++++++ ++||||||... .....+|+|+||+.++++.
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 799999998777789999999999887 59999999742 2345789999999988764
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=260.31 Aligned_cols=257 Identities=26% Similarity=0.474 Sum_probs=211.2
Q ss_pred CCCCCCcccceEEE--CCEEEEEcccCCCCC---CCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEc
Q 048754 301 AVEPSRCNFSACAA--GNRLVLFGGEGVNMQ---PMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFG 375 (625)
Q Consensus 301 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~---~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~G 375 (625)
++|.||.++++++. .+.|++|||.-.+.+ .+||+|+||..+ ++|+++..++.|+||++|.++++..+.+++||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~--~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK--NEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccc--cceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 57888999888874 568999999654432 479999999988 89999998889999999999999877999999
Q ss_pred cCC--CCC----ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---ceeceEEEEecCC
Q 048754 376 GCG--RQG----LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG---VLLSDTYLLDLTT 446 (625)
Q Consensus 376 G~~--~~~----~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~ 446 (625)
|.- .++ -+.|+|+||..++ +|+++.....|++|.+|-++++ .++++||||+.+.. .+.|++|+||+++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~tr--kweql~~~g~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTR--KWEQLEFGGGPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccc--hheeeccCCCCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 972 111 3689999999999 9999986667999999999999 55999999986543 5889999999877
Q ss_pred CCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCCC-----CcccccCceEEEEcCC---CCCceeEeeeccccC
Q 048754 447 DKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKSG-----HLRLRSGESYTIDLGD---EEPQWKQLECNAFTG 517 (625)
Q Consensus 447 ~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~ 517 (625)
-+ |+++.+.+ .|.||.+|++.+...+.|||+||+.... ......+++|.+++++ +...|.++.+.
T Consensus 217 yk--W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~---- 290 (521)
T KOG1230|consen 217 YK--WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS---- 290 (521)
T ss_pred ee--eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC----
Confidence 55 99998643 5889999999999667999999986422 1123468999999884 23689999876
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCC--------CCCCCCcEEEEeCCCCCCCeEEEcC
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA--------GLHSPSQLFLLDPSEEKPSWRILNV 575 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~v~~~d~~~~~~~W~~v~~ 575 (625)
|..|.||++.++++..+++-+.|||... .+..++|+|.||+ ..++|+..+.
T Consensus 291 -----g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdl--t~nrW~~~ql 349 (521)
T KOG1230|consen 291 -----GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDL--TRNRWSEGQL 349 (521)
T ss_pred -----CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheec--ccchhhHhhh
Confidence 7889999999999998889999999753 2334799999999 6889987653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=285.70 Aligned_cols=251 Identities=17% Similarity=0.241 Sum_probs=207.1
Q ss_pred eecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE
Q 048754 286 TTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365 (625)
Q Consensus 286 ~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~ 365 (625)
|+....+|..++ ..| .+..|+++++++.||++||........+++++||+.+ ++|..+ +++|.+|.+|++++
T Consensus 269 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~--~~~~~~R~~~~~~~ 340 (534)
T PHA03098 269 NYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV--PELIYPRKNPGVTV 340 (534)
T ss_pred cchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC--CCCCcccccceEEE
Confidence 555566777764 233 2455788999999999999876666778999999988 799977 67888999999888
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+ +++||++||.......+++++||+.++ +|..++++ |.+|.+|+++.+ ++++|++||....+..++++++||+.
T Consensus 341 ~-~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l--p~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 341 F-NNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPL--IFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred E-CCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc--CcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCC
Confidence 7 568999999986667889999999999 99999877 889999999888 56999999986666567899999987
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+++ |+.+++ +|.+|.+|+++++++ +||++||....... ...+.+++||+. +.+|+.++.+
T Consensus 415 t~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~-~~~~~v~~yd~~--~~~W~~~~~~------------ 474 (534)
T PHA03098 415 TNK--WSKGSP--LPISHYGGCAIYHDG-KIYVIGGISYIDNI-KVYNIVESYNPV--TNKWTELSSL------------ 474 (534)
T ss_pred CCe--eeecCC--CCccccCceEEEECC-EEEEECCccCCCCC-cccceEEEecCC--CCceeeCCCC------------
Confidence 766 999876 788999999988877 99999998654321 124669999999 6799999765
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
|.+|..++++.. +++|||+||.+... ..+++++||+ ++++|+.+.
T Consensus 475 ~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~--~~~~W~~~~ 519 (534)
T PHA03098 475 NFPRINASLCIF-NNKIYVVGGDKYEY-YINEIEVYDD--KTNTWTLFC 519 (534)
T ss_pred CcccccceEEEE-CCEEEEEcCCcCCc-ccceeEEEeC--CCCEEEecC
Confidence 678888888888 99999999987543 3689999999 799999885
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=237.63 Aligned_cols=253 Identities=26% Similarity=0.390 Sum_probs=206.3
Q ss_pred ceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-----ccccEEEEECCCCCCEEEEcCCC-----------CCCC
Q 048754 345 EWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-----LLNDVFVLDLDAKQPTWIEVSGG-----------APPL 408 (625)
Q Consensus 345 ~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~d~~t~~~~W~~~~~~-----------~~p~ 408 (625)
.|+.- ..+ -+.|.+|+++.+ +.+||-|||+.... -.-|+.++|..+- +|.+++.. ..|-
T Consensus 3 ~WTVH-LeG-GPrRVNHAavaV-G~riYSFGGYCsGedy~~~~piDVH~lNa~~~--RWtk~pp~~~ka~i~~~yp~VPy 77 (392)
T KOG4693|consen 3 TWTVH-LEG-GPRRVNHAAVAV-GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENY--RWTKMPPGITKATIESPYPAVPY 77 (392)
T ss_pred eEEEE-ecC-Ccccccceeeee-cceEEecCCcccccccccCCcceeEEeeccce--eEEecCcccccccccCCCCccch
Confidence 46643 123 344899999988 77999999995322 2347899998888 99988752 2467
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGH 487 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 487 (625)
.|++|+.+.+++ ++||.||.++.....|-++.||+++.. |.+.... ..|..|.+|+++++++ .+|||||+..+..
T Consensus 78 qRYGHtvV~y~d-~~yvWGGRND~egaCN~Ly~fDp~t~~--W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 78 QRYGHTVVEYQD-KAYVWGGRNDDEGACNLLYEFDPETNV--WKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDAQ 153 (392)
T ss_pred hhcCceEEEEcc-eEEEEcCccCcccccceeeeecccccc--ccccceeeecCCccCCceeeEECc-EEEEecChHHHHH
Confidence 799999999955 999999998877788999999987755 9887643 3688999999999988 9999999975432
Q ss_pred cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC--------CCCcEE
Q 048754 488 LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH--------SPSQLF 559 (625)
Q Consensus 488 ~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~--------~~~~v~ 559 (625)
..+++++++|+. +.+|+.+... +.+|.-|.+|++.++ ++.+|||||...... +-+.+.
T Consensus 154 --~FS~d~h~ld~~--TmtWr~~~Tk---------g~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~ 219 (392)
T KOG4693|consen 154 --RFSQDTHVLDFA--TMTWREMHTK---------GDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIM 219 (392)
T ss_pred --hhhccceeEecc--ceeeeehhcc---------CCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeE
Confidence 236899999999 8899999887 678888899999999 899999999764321 135777
Q ss_pred EEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC-CCccCceEEEEccCCCCC
Q 048754 560 LLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE-EWVLNELHELCLASKQDS 623 (625)
Q Consensus 560 ~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~-~~~~~d~~~~~~~~~~~~ 623 (625)
.||+ .+..|......+..|.+|..|++.++++ ++|+|||+++. +.-++|+|.||..++.++
T Consensus 220 ~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGYng~ln~HfndLy~FdP~t~~W~ 281 (392)
T KOG4693|consen 220 ALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGYNGTLNVHFNDLYCFDPKTSMWS 281 (392)
T ss_pred EEec--cccccccCCCCCcCCCcccccceEEEcc-eEEEecccchhhhhhhcceeecccccchhe
Confidence 8999 7999999988888999999999999985 99999999986 445899999999988765
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=258.40 Aligned_cols=305 Identities=28% Similarity=0.519 Sum_probs=236.7
Q ss_pred cccCeeEEee-ecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccceeEEE
Q 048754 288 LEAVCWRKFT-VRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWGHTLSS 365 (625)
Q Consensus 288 ~~~~~W~~~~-~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~ 365 (625)
+...+|+... ..|+.|.||.||.++++..-|.||||-+. ...+++++||..+ ++|...... ..|++...|..++
T Consensus 14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE--GiiDELHvYNTat--nqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE--GIIDELHVYNTAT--NQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred hcccceEEEecccCCCCCccccchheeeeeeEEEecCCcc--cchhhhhhhcccc--ceeecchhcCCCCCchhhcceEe
Confidence 3456898776 46788999999999999999999999533 5577799999887 899976544 3666666666665
Q ss_pred EcCCEEEEEccCCCCC-ccccEEEEECCCCCCEEEEcC-----CCCCCCCCccceEEEEcCCEEEEEcCcCCCC------
Q 048754 366 LNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQPTWIEVS-----GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG------ 433 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~~W~~~~-----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~------ 433 (625)
. +.+||+|||....+ +.||+|.+. ...+.|.++. ++.+|.||.+|+...+ +++-|+|||..+..
T Consensus 90 d-GtrilvFGGMvEYGkYsNdLYELQ--asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 90 D-GTRILVFGGMVEYGKYSNDLYELQ--ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred c-CceEEEEccEeeeccccchHHHhh--hhhhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEeEEeccccccccCcccc
Confidence 4 78999999996544 778877554 4444677654 4577999999999777 78999999985432
Q ss_pred --ceeceEEEEecC--CCCCceEEcCC-CCCCCCCCcceEEEEC-----CcEEEEEcCCcCCCCcccccCceEEEEcCCC
Q 048754 434 --VLLSDTYLLDLT--TDKPMWREIPT-SWSPPSRLGHSLSVYG-----RTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503 (625)
Q Consensus 434 --~~~~~~~~~d~~--~~~~~W~~~~~-~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~ 503 (625)
.++||+|++++. +.-.-|...-. +..|++|-.|+++++. ..++||+||..+-. +.|+|.+|++
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-----LgDLW~Ldl~-- 238 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-----LGDLWTLDLD-- 238 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-----ccceeEEecc--
Confidence 378999999875 33456876543 4578999999999982 23899999987543 6999999999
Q ss_pred CCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC-------------CCCCCCcEEEEeCCCCCCCe
Q 048754 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA-------------GLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 504 ~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-------------~~~~~~~v~~~d~~~~~~~W 570 (625)
+.+|.+.... |..|.||+-|++..+ +++||||||+-. .....+.+-++|+ ++..|
T Consensus 239 Tl~W~kp~~~---------G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl--dt~~W 306 (830)
T KOG4152|consen 239 TLTWNKPSLS---------GVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL--DTMAW 306 (830)
T ss_pred eeeccccccc---------CCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccceeeeee--cchhe
Confidence 8899998776 678999999999999 999999999731 1223567778999 78999
Q ss_pred EEEcCC----CCCCCCCCcceEEEECCcEEEEEcCcCCCCC------ccCceEEEEccCC
Q 048754 571 RILNVP----GQPPKFAWGHSTCVVGGTRVLVLGGHTGEEW------VLNELHELCLASK 620 (625)
Q Consensus 571 ~~v~~~----~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~------~~~d~~~~~~~~~ 620 (625)
..+... ...|.+|.+|+++.+++ ++||..|.++-.+ --.|+|.||....
T Consensus 307 ~tl~~d~~ed~tiPR~RAGHCAvAigt-RlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 307 ETLLMDTLEDNTIPRARAGHCAVAIGT-RLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred eeeeeccccccccccccccceeEEecc-EEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 988642 23788999999999986 9999999886321 2468888886544
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=271.66 Aligned_cols=246 Identities=33% Similarity=0.566 Sum_probs=211.3
Q ss_pred CCCCCccceeEEEEcCCEEEEEccCCCCCcccc--EEEEECCCCCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCc
Q 048754 353 SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLND--VFVLDLDAKQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGC 429 (625)
Q Consensus 353 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~ 429 (625)
..|.+|++|+++.+ ++++|||||........+ +|++|..+. .|.... .+..|.+|++|+++.+ +++||+|||.
T Consensus 56 ~~p~~R~~hs~~~~-~~~~~vfGG~~~~~~~~~~dl~~~d~~~~--~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~ 131 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLI-GNKLYVFGGYGSGDRLTDLDLYVLDLESQ--LWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGT 131 (482)
T ss_pred CCcchhhccceeEE-CCEEEEECCCCCCCccccceeEEeecCCc--ccccccccCCCCCcccceeEEEE-CCeEEEEccc
Confidence 37889999999998 778999999976665554 999999988 898654 4566899999999999 5699999998
Q ss_pred CCCCceeceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCcee
Q 048754 430 TDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWK 508 (625)
Q Consensus 430 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~ 508 (625)
.......++++.||+.+.+ |..+...+ .|++|.+|+++++++ ++|||||...... .++++|+||+. +.+|.
T Consensus 132 ~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~---~~ndl~i~d~~--~~~W~ 203 (482)
T KOG0379|consen 132 DKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGD---SLNDLHIYDLE--TSTWS 203 (482)
T ss_pred cCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EEEEECCccCccc---ceeeeeeeccc--cccce
Confidence 8655568999999988877 99887654 589999999999996 9999999987664 36999999999 67899
Q ss_pred EeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceE
Q 048754 509 QLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHST 588 (625)
Q Consensus 509 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~ 588 (625)
++... +..|.||.+|+++++ +++++|+||.+.+...++|+|.||+ .+..|..+...+..|.+|++|++
T Consensus 204 ~~~~~---------g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl--~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 204 ELDTQ---------GEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDL--STWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred ecccC---------CCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeec--ccceeeeccccCCCCCCcceeee
Confidence 99987 678999999999999 8999999998867777999999999 68999988888999999999999
Q ss_pred EEECCcEEEEEcCcCCCCC-ccCceEEEEccCCCCC
Q 048754 589 CVVGGTRVLVLGGHTGEEW-VLNELHELCLASKQDS 623 (625)
Q Consensus 589 ~~~~~~~i~i~GG~~~~~~-~~~d~~~~~~~~~~~~ 623 (625)
++.. ..++|+||...... .+.|+|.|++.+..++
T Consensus 272 ~~~~-~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~ 306 (482)
T KOG0379|consen 272 TVSG-DHLLLFGGGTDPKQEPLGDLYGLDLETLVWS 306 (482)
T ss_pred EEEC-CEEEEEcCCccccccccccccccccccccee
Confidence 9665 59999999887533 5899999998865543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=272.46 Aligned_cols=263 Identities=17% Similarity=0.212 Sum_probs=205.3
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-ccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~ 394 (625)
..+++.||.. .....+..|+... .+|..+ ...| .+..|+++++ +++||++||..... ..++++.||+.++
T Consensus 251 ~~~~~~~g~~---~~~~~~~~~~~~~--~~~~~~--~~~~-~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~ 321 (534)
T PHA03098 251 SIIYIHITMS---IFTYNYITNYSPL--SEINTI--IDIH-YVYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTK 321 (534)
T ss_pred cceEeecccc---hhhceeeecchhh--hhcccc--cCcc-ccccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCC
Confidence 3455656643 1223344566554 578766 3333 2445566666 66899999987544 5679999999999
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+|..++.+ |.+|.+|+++.+ ++++|++||... ...++++++||+.+++ |+.+++ +|.+|++|+++++++
T Consensus 322 --~W~~~~~~--~~~R~~~~~~~~-~~~lyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~~--lp~~r~~~~~~~~~~- 390 (534)
T PHA03098 322 --SWNKVPEL--IYPRKNPGVTVF-NNRIYVIGGIYN-SISLNTVESWKPGESK--WREEPP--LIFPRYNPCVVNVNN- 390 (534)
T ss_pred --eeeECCCC--CcccccceEEEE-CCEEEEEeCCCC-CEecceEEEEcCCCCc--eeeCCC--cCcCCccceEEEECC-
Confidence 99999877 789999999888 569999999763 4467899999987766 999876 788999999988877
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC-
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH- 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~- 553 (625)
+||++||....+.. ++++++||+. +.+|+.+.++ |.+|.+|+++.. +++|||+||.+....
T Consensus 391 ~iYv~GG~~~~~~~---~~~v~~yd~~--t~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 391 LIYVIGGISKNDEL---LKTVECFSLN--TNKWSKGSPL------------PISHYGGCAIYH-DGKIYVIGGISYIDNI 452 (534)
T ss_pred EEEEECCcCCCCcc---cceEEEEeCC--CCeeeecCCC------------CccccCceEEEE-CCEEEEECCccCCCCC
Confidence 99999997654432 5889999998 6799998765 788999998888 899999999864322
Q ss_pred -CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 554 -SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 554 -~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
..+.+++||+ .+++|+.+. .+|.+|..+++++++ ++|||+||.+... ..+++++||+.+++|.
T Consensus 453 ~~~~~v~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~-~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 453 KVYNIVESYNP--VTNKWTELS---SLNFPRINASLCIFN-NKIYVVGGDKYEY-YINEIEVYDDKTNTWT 516 (534)
T ss_pred cccceEEEecC--CCCceeeCC---CCCcccccceEEEEC-CEEEEEcCCcCCc-ccceeEEEeCCCCEEE
Confidence 2567999999 799999985 567788889888885 5999999998754 4789999999988774
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=257.06 Aligned_cols=251 Identities=22% Similarity=0.359 Sum_probs=188.4
Q ss_pred eeeec--ccCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCCCC-----CCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 284 ELTTL--EAVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGVNM-----QPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 284 ~~~~~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
..|++ ...+|..++ ++| .+|.++++++++++|||+||+.... ..++++|+||+.+ ++|+++. ..+|
T Consensus 32 ~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~--~~W~~~~-~~~p 105 (346)
T TIGR03547 32 YKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK--NSWQKLD-TRSP 105 (346)
T ss_pred EEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC--CEEecCC-CCCC
Confidence 34554 467899987 566 5799999999999999999985432 2478899999988 8999885 2456
Q ss_pred CCccceeEEEEcCCEEEEEccCCCCC----------------------------------ccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQG----------------------------------LLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~~----------------------------------~~~~~~~~d~~t~~~~W~~~ 401 (625)
.+|.+|+++++.+++||++||..... .++++++||+.++ +|+.+
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~ 183 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNL 183 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeEC
Confidence 77778877744477999999985321 2478999999999 99999
Q ss_pred CCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-------CcceEEEECC
Q 048754 402 SGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR-------LGHSLSVYGR 473 (625)
Q Consensus 402 ~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~~ 473 (625)
+.+ |. +|.+|+++.+ +++|||+||....+....+++.|+++..+.+|+.++. +|.+| .+|+++++++
T Consensus 184 ~~~--p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~--m~~~r~~~~~~~~~~~a~~~~~ 258 (346)
T TIGR03547 184 GEN--PFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP--LPPPKSSSQEGLAGAFAGISNG 258 (346)
T ss_pred ccC--CCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC--CCCCCCCccccccEEeeeEECC
Confidence 876 54 6888888777 6699999997654434456788887666667999886 55544 3555667766
Q ss_pred cEEEEEcCCcCCCCc-------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 474 TKVLMFGGLAKSGHL-------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~-------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
+||++||....... ......+.+||++ +.+|+.+..+ |.+|..++++++ ++
T Consensus 259 -~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~~~~~~~~~~-~~ 322 (346)
T TIGR03547 259 -VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKL------------PQGLAYGVSVSW-NN 322 (346)
T ss_pred -EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--CCcccccCCC------------CCCceeeEEEEc-CC
Confidence 99999998632210 0011356789988 6699999866 778888877767 99
Q ss_pred EEEEEecCCCCCCCCCcEEEEeC
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+|||+||.+......++|+.|..
T Consensus 323 ~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 323 GVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EEEEEeccCCCCCEeeeEEEEEe
Confidence 99999999876667888887754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=251.56 Aligned_cols=236 Identities=16% Similarity=0.223 Sum_probs=181.1
Q ss_pred eeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce----EEcccCCCCCCccceeEEEEc
Q 048754 292 CWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW----RRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 292 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~~~p~~r~~~~~~~~~ 367 (625)
+|..+. .+|.+|..+++++++++||++||... ...++++++||+.+ .+| ..+ +++|.+|.+|+++++
T Consensus 52 ~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~-~~~~~~v~~~d~~~--~~w~~~~~~~--~~lp~~~~~~~~~~~- 122 (323)
T TIGR03548 52 KWVKDG---QLPYEAAYGASVSVENGIYYIGGSNS-SERFSSVYRITLDE--SKEELICETI--GNLPFTFENGSACYK- 122 (323)
T ss_pred eEEEcc---cCCccccceEEEEECCEEEEEcCCCC-CCCceeEEEEEEcC--CceeeeeeEc--CCCCcCccCceEEEE-
Confidence 688876 78888988888999999999999854 34578899999987 566 544 678889999998877
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+++|||+||.......+++++||+.++ +|+.+++++ ..+|..|+++++ +++|||+||.... ...++++||+.++
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p-~~~r~~~~~~~~-~~~iYv~GG~~~~--~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFP-GEPRVQPVCVKL-QNELYVFGGGSNI--AYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCC-CCCCCcceEEEE-CCEEEEEcCCCCc--cccceEEEecCCC
Confidence 568999999865556899999999999 999998762 247888888777 5699999997532 3467899998776
Q ss_pred CCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCc----------------------------ccccCceE
Q 048754 448 KPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL----------------------------RLRSGESY 496 (625)
Q Consensus 448 ~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~----------------------------~~~~~~~~ 496 (625)
+ |+.++.. ..|..+.+++++++.+++||++||.+..... ....++++
T Consensus 197 ~--W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 274 (323)
T TIGR03548 197 Q--WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKIL 274 (323)
T ss_pred e--eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEE
Confidence 6 9998752 1344455666666665699999998642100 00136799
Q ss_pred EEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcE
Q 048754 497 TIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQL 558 (625)
Q Consensus 497 ~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v 558 (625)
+||+. +.+|+.+..+ +..+|.+++++.+ +++||++||........+++
T Consensus 275 ~yd~~--~~~W~~~~~~-----------p~~~r~~~~~~~~-~~~iyv~GG~~~pg~rt~~~ 322 (323)
T TIGR03548 275 IYNVR--TGKWKSIGNS-----------PFFARCGAALLLT-GNNIFSINGELKPGVRTPDI 322 (323)
T ss_pred EEECC--CCeeeEcccc-----------cccccCchheEEE-CCEEEEEeccccCCcCCcCc
Confidence 99999 6799999865 2358889988888 99999999987655545544
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=255.24 Aligned_cols=258 Identities=23% Similarity=0.341 Sum_probs=189.2
Q ss_pred eeeecc--cCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCC-C----CCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 284 ELTTLE--AVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGV-N----MQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 284 ~~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~-~----~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
..|++. ++.|..++ ++| ++|.+++++.++++|||+||... . ...++++|+||+.+ ++|+++. +..|
T Consensus 53 ~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~-~~~p 126 (376)
T PRK14131 53 YKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLD-TRSP 126 (376)
T ss_pred EEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCC-CCCC
Confidence 345654 46899886 444 47999999999999999999864 1 13468899999988 7999985 2346
Q ss_pred CCccceeEEEEcCCEEEEEccCCCC----------------------------------CccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~~~W~~~ 401 (625)
.++.+|+++++.+++||++||.... ...+++++||+.++ +|..+
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~ 204 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNA 204 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeEC
Confidence 7778888777457799999997531 12478999999999 99999
Q ss_pred CCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCc--------ceEEEEC
Q 048754 402 SGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLG--------HSLSVYG 472 (625)
Q Consensus 402 ~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~--------~~~~~~~ 472 (625)
..+ |. +|.+|+++.+ +++|||+||....+....+++.|+++..+.+|+.++. +|.+|.+ +.+++++
T Consensus 205 ~~~--p~~~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~~a~~~~ 279 (376)
T PRK14131 205 GES--PFLGTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD--LPPAPGGSSQEGVAGAFAGYSN 279 (376)
T ss_pred CcC--CCCCCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC--CCCCCcCCcCCccceEeceeEC
Confidence 876 53 6777877777 6699999997655444566776655445566999886 5655532 2245566
Q ss_pred CcEEEEEcCCcCCCCc-------------ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 473 RTKVLMFGGLAKSGHL-------------RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~-------------~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
+ +||++||....... ......+.+||++ +.+|+.+..+ |.+|..++++.+ +
T Consensus 280 ~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~l------------p~~r~~~~av~~-~ 343 (376)
T PRK14131 280 G-VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGEL------------PQGLAYGVSVSW-N 343 (376)
T ss_pred C-EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcC------------CCCccceEEEEe-C
Confidence 5 99999998642210 0001235679998 6699998765 788988888877 9
Q ss_pred CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEE
Q 048754 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI 572 (625)
Q Consensus 540 ~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~ 572 (625)
++|||+||...+....++|++|++ ..+.|..
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~--~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSW--DGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEE--cCCEEEE
Confidence 999999998765566889999999 4556643
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=248.54 Aligned_cols=212 Identities=17% Similarity=0.253 Sum_probs=176.9
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++.||++||... ....+.+++||+.+ ++|..+ +++|.+|..++++++ +++||++||.... +.++.||
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~--~~W~~~--~~m~~~r~~~~~v~~-~~~iYviGG~~~~---~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYIS--NNWIPI--PPMNSPRLYASGVPA-NNKLYVVGGLPNP---TSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCC--CEEEEC--CCCCchhhcceEEEE-CCEEEEECCcCCC---CceEEEE
Confidence 3458999999999754 34567899999988 799987 678889998888877 6689999997532 5689999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
+.++ +|..++++ |.+|.+|+++++ +++||++||.... .+.+++||+.+++ |+.+++ ++.+|..|++++
T Consensus 338 p~~n--~W~~~~~l--~~~r~~~~~~~~-~g~IYviGG~~~~---~~~ve~ydp~~~~--W~~~~~--m~~~r~~~~~~~ 405 (480)
T PHA02790 338 HGDA--AWVNMPSL--LKPRCNPAVASI-NNVIYVIGGHSET---DTTTEYLLPNHDQ--WQFGPS--TYYPHYKSCALV 405 (480)
T ss_pred CCCC--eEEECCCC--CCCCcccEEEEE-CCEEEEecCcCCC---CccEEEEeCCCCE--EEeCCC--CCCccccceEEE
Confidence 9999 99999987 889999999888 5599999997532 3678999987766 999886 888999999988
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
+++ +||++||. +.+||++ +.+|+.++++ |.+|..++++++ +++|||+||.+.
T Consensus 406 ~~~-~IYv~GG~------------~e~ydp~--~~~W~~~~~m------------~~~r~~~~~~v~-~~~IYviGG~~~ 457 (480)
T PHA02790 406 FGR-RLFLVGRN------------AEFYCES--SNTWTLIDDP------------IYPRDNPELIIV-DNKLLLIGGFYR 457 (480)
T ss_pred ECC-EEEEECCc------------eEEecCC--CCcEeEcCCC------------CCCccccEEEEE-CCEEEEECCcCC
Confidence 877 99999983 3478988 6799999876 788999998888 999999999864
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.. ..+.+++||+ .+++|+...
T Consensus 458 ~~-~~~~ve~Yd~--~~~~W~~~~ 478 (480)
T PHA02790 458 GS-YIDTIEVYNN--RTYSWNIWD 478 (480)
T ss_pred Cc-ccceEEEEEC--CCCeEEecC
Confidence 33 3578999999 799998753
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=244.92 Aligned_cols=206 Identities=15% Similarity=0.270 Sum_probs=174.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.||++||.......+.++.||+.++ +|..++++ |.+|..++++.+ ++++|++||.... ++++.||+.+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~--~W~~~~~m--~~~r~~~~~v~~-~~~iYviGG~~~~----~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISN--NWIPIPPM--NSPRLYASGVPA-NNKLYVVGGLPNP----TSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCC--EEEECCCC--CchhhcceEEEE-CCEEEEECCcCCC----CceEEEECCC
Confidence 3679999999876667788999999999 99999988 789998998888 6699999997432 5789999866
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
++ |+.+++ +|.+|..|+++++++ +||++||.... .+.+.+||+. +.+|+.++++ |
T Consensus 341 n~--W~~~~~--l~~~r~~~~~~~~~g-~IYviGG~~~~------~~~ve~ydp~--~~~W~~~~~m------------~ 395 (480)
T PHA02790 341 AA--WVNMPS--LLKPRCNPAVASINN-VIYVIGGHSET------DTTTEYLLPN--HDQWQFGPST------------Y 395 (480)
T ss_pred Ce--EEECCC--CCCCCcccEEEEECC-EEEEecCcCCC------CccEEEEeCC--CCEEEeCCCC------------C
Confidence 55 999986 888999999999977 99999997532 2568889998 6799999876 7
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
.+|..++++++ +++|||+||. +.+||+ ++++|+.++ .+|.+|..++++++++ +||++||.++..
T Consensus 396 ~~r~~~~~~~~-~~~IYv~GG~---------~e~ydp--~~~~W~~~~---~m~~~r~~~~~~v~~~-~IYviGG~~~~~ 459 (480)
T PHA02790 396 YPHYKSCALVF-GRRLFLVGRN---------AEFYCE--SSNTWTLID---DPIYPRDNPELIIVDN-KLLLIGGFYRGS 459 (480)
T ss_pred CccccceEEEE-CCEEEEECCc---------eEEecC--CCCcEeEcC---CCCCCccccEEEEECC-EEEEECCcCCCc
Confidence 89999988888 9999999983 568999 799999885 6788899999998875 999999988544
Q ss_pred CccCceEEEEccCCCCC
Q 048754 607 WVLNELHELCLASKQDS 623 (625)
Q Consensus 607 ~~~~d~~~~~~~~~~~~ 623 (625)
.++.+++||+.+++|+
T Consensus 460 -~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 460 -YIDTIEVYNNRTYSWN 475 (480)
T ss_pred -ccceEEEEECCCCeEE
Confidence 3688999999999875
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-27 Score=223.34 Aligned_cols=264 Identities=29% Similarity=0.477 Sum_probs=206.1
Q ss_pred eeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-----CCCCCc
Q 048754 284 ELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-----SSPPGR 358 (625)
Q Consensus 284 ~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----~~p~~r 358 (625)
.+|+-.+++|......|+.|++...|..+..|.+||+|||+-....++||+|.+.... ..|+++++. .+|.||
T Consensus 60 HvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPR 137 (830)
T KOG4152|consen 60 HVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPR 137 (830)
T ss_pred hhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCc
Confidence 3577788999999999999999999999999999999999988889999998776554 789998643 367789
Q ss_pred cceeEEEEcCCEEEEEccCCC---------CCccccEEEEECCCC--CCEEEE-cCCCCCCCCCccceEEEE-----cCC
Q 048754 359 WGHTLSSLNGSWLVVFGGCGR---------QGLLNDVFVLDLDAK--QPTWIE-VSGGAPPLPRSWHSSCII-----EGS 421 (625)
Q Consensus 359 ~~~~~~~~~~~~iyv~GG~~~---------~~~~~~~~~~d~~t~--~~~W~~-~~~~~~p~~r~~~~~~~~-----~~~ 421 (625)
.+|+...+ +++.|+|||... ..++||+|++++..+ -.-|.. +..+..|.+|-.|+++.+ ...
T Consensus 138 lGHSFsl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~s 216 (830)
T KOG4152|consen 138 LGHSFSLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKS 216 (830)
T ss_pred cCceeEEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcc
Confidence 99999988 679999999842 227999999998744 446874 455677999999999988 124
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC-CCCCCCcceEEEECCcEEEEEcCCcCC---CCc-------cc
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSVYGRTKVLMFGGLAKS---GHL-------RL 490 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~~~~---~~~-------~~ 490 (625)
++||+||+. +..+.|+|.+|+++-+ |.+....+ .|.||.-|+++.+++ ++|||||+-.. ... =.
T Consensus 217 kmvvyGGM~--G~RLgDLW~Ldl~Tl~--W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 217 KMVVYGGMS--GCRLGDLWTLDLDTLT--WNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPLVMDDVKVATHEKEWK 291 (830)
T ss_pred eEEEEcccc--cccccceeEEecceee--cccccccCCCCCCcccccceeecc-eeEEecceeeeeccccccccccceee
Confidence 799999974 5578999999987765 99987654 578999999999998 99999998531 100 02
Q ss_pred ccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC------CCCcEEEEeC
Q 048754 491 RSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH------SPSQLFLLDP 563 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~------~~~~v~~~d~ 563 (625)
+.+.+-.++++ +..|..+-... ......|.+|++|+++++ +.+||+..|.+.-.. .-.|+|.+|.
T Consensus 292 CTssl~clNld--t~~W~tl~~d~-----~ed~tiPR~RAGHCAvAi-gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 292 CTSSLACLNLD--TMAWETLLMDT-----LEDNTIPRARAGHCAVAI-GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eccceeeeeec--chheeeeeecc-----ccccccccccccceeEEe-ccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 34566677887 67898775432 122237999999999999 999999999864221 1357777776
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=174.70 Aligned_cols=289 Identities=20% Similarity=0.325 Sum_probs=210.7
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
..|.+....+.+.+++.+||-=|.... ..|.+|++.....|+++. .-+-.+|.+..++++ +++||+|||.+..
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a-~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~ 104 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIA-DFPGGARNQAVAAVI-GGKLYVFGGYGKS 104 (381)
T ss_pred CCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcc-cCCCcccccchheee-CCeEEEeeccccC
Confidence 567776667888899999998774222 378999998778999884 224456777777766 6689999999643
Q ss_pred C-----ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC------------------------
Q 048754 381 G-----LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD------------------------ 431 (625)
Q Consensus 381 ~-----~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~------------------------ 431 (625)
. ..+++|+||+.++ +|.++... .|....+|+++.+.+.++|++||.+.
T Consensus 105 ~~~~~~~~nd~Y~y~p~~n--sW~kl~t~-sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTN--SWHKLDTR-SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCceEeeeeEEecCCCC--hhheeccc-cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 2 5799999999999 99999863 36678899999998879999999841
Q ss_pred ---------CCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 432 ---------AGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 432 ---------~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+......++.|++.++. |+.+... +-.++++ +++++.++++.++-|.-..+. .+..++.++...
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~--W~~~G~~-pf~~~aG-sa~~~~~n~~~lInGEiKpGL---Rt~~~k~~~~~~ 254 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQ--WRNLGEN-PFYGNAG-SAVVIKGNKLTLINGEIKPGL---RTAEVKQADFGG 254 (381)
T ss_pred HHHhCCCHHHhcccccccccccccch--hhhcCcC-cccCccC-cceeecCCeEEEEcceecCCc---cccceeEEEecc
Confidence 11244578889987766 9987631 2346666 455666668888888766554 367888888886
Q ss_pred CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC------------------CCCCCcEEEEeCC
Q 048754 503 EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG------------------LHSPSQLFLLDPS 564 (625)
Q Consensus 503 ~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~v~~~d~~ 564 (625)
+..+|..+..++-+ .+..+....++.+-.. ++.++|.||.+.. ....++||.||
T Consensus 255 ~~~~w~~l~~lp~~-----~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-- 326 (381)
T COG3055 255 DNLKWLKLSDLPAP-----IGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-- 326 (381)
T ss_pred CceeeeeccCCCCC-----CCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--
Confidence 67899999877411 1122233344444444 7889999997521 12367899998
Q ss_pred CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 565 EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 565 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
++.|+.+ |.+|.++.+..++..+ +.++++||.+..+..+..++.+.++..
T Consensus 327 --~g~Wk~~---GeLp~~l~YG~s~~~n-n~vl~IGGE~~~Gka~~~v~~l~~~gk 376 (381)
T COG3055 327 --NGSWKIV---GELPQGLAYGVSLSYN-NKVLLIGGETSGGKATTRVYSLSWDGK 376 (381)
T ss_pred --CCceeee---cccCCCccceEEEecC-CcEEEEccccCCCeeeeeEEEEEEcCc
Confidence 6799998 6888877666666665 699999999999888999998877543
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-17 Score=149.41 Aligned_cols=255 Identities=23% Similarity=0.386 Sum_probs=187.2
Q ss_pred ccceeeeecc--cCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCC----CCCCCCeEEEeccCCCCceEEcccCC
Q 048754 280 RLARELTTLE--AVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVN----MQPMDDTFVLNLDAANPEWRRVSVKS 353 (625)
Q Consensus 280 ~~~~~~~~~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~~~~~~~~~~~W~~~~~~~ 353 (625)
...+...|+. ...|+++.. -+-.+|.+..+++++++||||||.... .+.++|+|+||+.+ ++|.++. ..
T Consensus 57 G~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~--nsW~kl~-t~ 131 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPST--NSWHKLD-TR 131 (381)
T ss_pred CccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCC--Chhheec-cc
Confidence 3334444554 357999873 234469999999999999999997643 34578999999988 8999985 44
Q ss_pred CCCCccceeEEEEcCCEEEEEccCCC----------------------------------CCccccEEEEECCCCCCEEE
Q 048754 354 SPPGRWGHTLSSLNGSWLVVFGGCGR----------------------------------QGLLNDVFVLDLDAKQPTWI 399 (625)
Q Consensus 354 ~p~~r~~~~~~~~~~~~iyv~GG~~~----------------------------------~~~~~~~~~~d~~t~~~~W~ 399 (625)
.|..-.+++++...+.+||++||... ..+..+++.|++.++ .|+
T Consensus 132 sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~ 209 (381)
T COG3055 132 SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWR 209 (381)
T ss_pred cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhh
Confidence 56678889999887779999999832 014567999999999 999
Q ss_pred EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-------CcceEEEEC
Q 048754 400 EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR-------LGHSLSVYG 472 (625)
Q Consensus 400 ~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r-------~~~~~~~~~ 472 (625)
.+... +-.++++ ++++..++++.++-|.-..+..+..++.+++..+..+|..++. .|.+. .++-.-..
T Consensus 210 ~~G~~-pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~--lp~~~~~~~eGvAGaf~G~s- 284 (381)
T COG3055 210 NLGEN-PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD--LPAPIGSNKEGVAGAFSGKS- 284 (381)
T ss_pred hcCcC-cccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC--CCCCCCCCccccceecccee-
Confidence 88743 2455665 5556678889999998888878888999998877788999875 33222 22222222
Q ss_pred CcEEEEEcCCcCCC---------------CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe
Q 048754 473 RTKVLMFGGLAKSG---------------HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM 537 (625)
Q Consensus 473 ~~~l~v~GG~~~~~---------------~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 537 (625)
++.+.+.||....+ ....-.+++|.+| ..+|+.+..+ |.++.+..++..
T Consensus 285 ~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeL------------p~~l~YG~s~~~ 348 (381)
T COG3055 285 NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NGSWKIVGEL------------PQGLAYGVSLSY 348 (381)
T ss_pred CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc----CCceeeeccc------------CCCccceEEEec
Confidence 34888888865322 1112357888998 4599998665 778888888877
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
+++||++||...+......++.+..
T Consensus 349 -nn~vl~IGGE~~~Gka~~~v~~l~~ 373 (381)
T COG3055 349 -NNKVLLIGGETSGGKATTRVYSLSW 373 (381)
T ss_pred -CCcEEEEccccCCCeeeeeEEEEEE
Confidence 8999999999988877778877665
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-18 Score=163.83 Aligned_cols=311 Identities=17% Similarity=0.302 Sum_probs=200.2
Q ss_pred ccCeeEEeeecC-------CCCCCCcccceEEECC--EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCc
Q 048754 289 EAVCWRKFTVRG-------AVEPSRCNFSACAAGN--RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGR 358 (625)
Q Consensus 289 ~~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r 358 (625)
...+|.+++... .-|..|.||.|+...+ +||++||.+.- +.+.|+|.|+... +.|..+.... .|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e--~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKE--NQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCc--ceeEEeecCCCCCcch
Confidence 356787776544 5688899999998755 99999999654 6788999999988 7999987665 89999
Q ss_pred cceeEEEE-cCCEEEEEccCCCC------CccccEEEEECCCCCCEEEEcCC----CCCCCCCccceEEEEcC-CEEEEE
Q 048754 359 WGHTLSSL-NGSWLVVFGGCGRQ------GLLNDVFVLDLDAKQPTWIEVSG----GAPPLPRSWHSSCIIEG-SKLVVS 426 (625)
Q Consensus 359 ~~~~~~~~-~~~~iyv~GG~~~~------~~~~~~~~~d~~t~~~~W~~~~~----~~~p~~r~~~~~~~~~~-~~iyv~ 426 (625)
.+|-++.- ...++|+.|-+-+. ..-+|+|+||++++ .|..+.- ...|...+.|.+++..+ +.+|||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~--~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVf 391 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN--TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVF 391 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc--eeEEecccccccCCcceeecceeeEecCcceEEEe
Confidence 99998864 23489999977322 24579999999999 9997652 13488999999988833 239999
Q ss_pred cCcCCCC--ceeceEEEEecCCCCCceEEcCCC-----C---CCCCCCcceEEEECC-cEEEEEcCCcCCCCcccccCce
Q 048754 427 GGCTDAG--VLLSDTYLLDLTTDKPMWREIPTS-----W---SPPSRLGHSLSVYGR-TKVLMFGGLAKSGHLRLRSGES 495 (625)
Q Consensus 427 GG~~~~~--~~~~~~~~~d~~~~~~~W~~~~~~-----~---~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~ 495 (625)
||+.... ....-+|.||..... |..+... + ....|.+|++-...+ +.+|++||...... ++-.
T Consensus 392 GGr~~~~~e~~f~GLYaf~~~~~~--w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E----l~L~ 465 (723)
T KOG2437|consen 392 GGRILTCNEPQFSGLYAFNCQCQT--WKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE----LNLF 465 (723)
T ss_pred cCeeccCCCccccceEEEecCCcc--HHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE----Eeeh
Confidence 9975332 345679999976655 8765321 1 133688888877654 48999999865433 2344
Q ss_pred EEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-EEEEecCCEEEEEecCCC-----CCCCCCcEEEEeCCCCCCC
Q 048754 496 YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-VAVSMPCGRIIIFGGSIA-----GLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 496 ~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~~l~v~GG~~~-----~~~~~~~v~~~d~~~~~~~ 569 (625)
+.||+..++.. .+... ..+.....|++-... +...-....|.+.-|... .....+.+|+|++ .++.
T Consensus 466 f~y~I~~E~~~--~~s~~----~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i--~~~~ 537 (723)
T KOG2437|consen 466 FSYDIDSEHVD--IISDG----TKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDI--VRNS 537 (723)
T ss_pred hcceeccccch--hhhcc----CcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEe--cccc
Confidence 45555432111 11100 000111122222111 122222345666656532 1223578888888 5777
Q ss_pred eEEEcC----------------C-----CCCCCCCCcceEEEE-CCcEEEEEcCcCCCCC----ccCceEEEEcc
Q 048754 570 WRILNV----------------P-----GQPPKFAWGHSTCVV-GGTRVLVLGGHTGEEW----VLNELHELCLA 618 (625)
Q Consensus 570 W~~v~~----------------~-----~~~p~~r~~~~~~~~-~~~~i~i~GG~~~~~~----~~~d~~~~~~~ 618 (625)
|..+.- + -..|.+|++|+.++. .-+-+|++||..+... .+.|.|.++|-
T Consensus 538 w~cI~~I~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~ 612 (723)
T KOG2437|consen 538 WSCIYKIDQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKIC 612 (723)
T ss_pred hhhHhhhHHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhc
Confidence 776531 0 123557777775433 3468899999876532 57888877763
|
|
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=112.94 Aligned_cols=104 Identities=35% Similarity=0.518 Sum_probs=92.5
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
|++++++|. +|+|+++|++|++++|+++++++|++...++. +.........+.+.+..+..+..+..+
T Consensus 1 p~~i~i~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~ 68 (104)
T PF13426_consen 1 PDGIFILDP---DGRILYVNPAFERLFGYSREELIGKSISDFFP---------EEDRPEFEEQIERALEEGGSWSGEVRL 68 (104)
T ss_dssp -SEEEEEET---TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCS---------TTSCHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred CEEEEEECC---cCcEEehhHHHHHHHCcCHHHHcCCCcccccC---------cccchhhHHHHHHHHhcCCceeEEEEE
Confidence 579999999 99999999999999999999999999888864 234567778888888888889999999
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
.+++|+.+|+.+++.|+.+++|.+.+++++++|||+
T Consensus 69 ~~~~g~~~~~~~~~~~i~~~~g~~~~~i~~~~DiTe 104 (104)
T PF13426_consen 69 RRKDGETFWVEVSASPIRDEDGEITGIIGIFRDITE 104 (104)
T ss_dssp EETTSEEEEEEEEEEEEEETTSSEEEEEEEEEEEHH
T ss_pred EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence 999999999999999999999999999999999996
|
... |
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-14 Score=136.76 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=147.0
Q ss_pred CceEEcccCC--------CCCCccceeEEEEcC-CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccc
Q 048754 344 PEWRRVSVKS--------SPPGRWGHTLSSLNG-SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWH 413 (625)
Q Consensus 344 ~~W~~~~~~~--------~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~ 413 (625)
..|.++.... .|..|.||.++...+ +.||++||+++-.-+.|+|.|+...+ .|..+.... .|..|..|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 4677765332 467799999998643 58999999999888999999999988 999887443 69999999
Q ss_pred eEEEE-cCCEEEEEcCcCCCC-----ceeceEEEEecCCCCCceEEcCC----CCCCCCCCcceEEEECCc-EEEEEcCC
Q 048754 414 SSCII-EGSKLVVSGGCTDAG-----VLLSDTYLLDLTTDKPMWREIPT----SWSPPSRLGHSLSVYGRT-KVLMFGGL 482 (625)
Q Consensus 414 ~~~~~-~~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~-~l~v~GG~ 482 (625)
-++.. ...++|+.|-+-... ..-.++|+||+++++ |..+.- .+.|...+.|.|++.++. .+||+||+
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 98665 234899999764332 134689999998877 987742 257888999999998872 49999998
Q ss_pred cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEE
Q 048754 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLL 561 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~ 561 (625)
.-...- ..+..+|.||+. ...|..+...- .. ..+-......|.+|++-... +..+|++||..+. ..++-.+.|
T Consensus 395 ~~~~~e-~~f~GLYaf~~~--~~~w~~l~e~~-~~-~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-~El~L~f~y 468 (723)
T KOG2437|consen 395 ILTCNE-PQFSGLYAFNCQ--CQTWKLLREDS-CN-AGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-TELNLFFSY 468 (723)
T ss_pred eccCCC-ccccceEEEecC--CccHHHHHHHH-hh-cCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-eEEeehhcc
Confidence 643321 236889999998 56888765431 00 01111223567788776665 4568888886432 223444456
Q ss_pred eC
Q 048754 562 DP 563 (625)
Q Consensus 562 d~ 563 (625)
++
T Consensus 469 ~I 470 (723)
T KOG2437|consen 469 DI 470 (723)
T ss_pred ee
Confidence 55
|
|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-13 Score=150.26 Aligned_cols=192 Identities=10% Similarity=-0.004 Sum_probs=139.0
Q ss_pred eeeEEecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcc
Q 048754 24 QKCSFEGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPR 101 (625)
Q Consensus 24 ~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~ 101 (625)
......+.+++|+.|++++..+..+. ++++++++++.|. +|+++++|+++++++||++++++|++..++.++
T Consensus 182 ~~g~~~DIT~rk~ae~~l~~~~~~l~~l~e~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~--- 255 (807)
T PRK13560 182 VDGFAEDITERKRAEERIDEALHFLQQLLDNIADPAFWKDE---DAKVFGCNDAACLACGFRREEIIGMSIHDFAPA--- 255 (807)
T ss_pred EEEEEEccchHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC---CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCc---
Confidence 34456788888887776654333222 4449999999999 999999999999999999999999998877532
Q ss_pred cccCCCCCChHHH-HHHHHHHHhCcceEEEEEEEeecCcceeEEEE--EEEeeCCCCCEEEEEEEEEeeecccccCCcch
Q 048754 102 AQRRHPLVDPVVV-SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLR--LAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSY 178 (625)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~--~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~ 178 (625)
...... ......+..++....+.+..++||+.+|+.+. ..++.+.+|.+.+++++++|||++|++|+ .+
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~DITerk~~e~-~L 327 (807)
T PRK13560 256 -------QPADDYQEADAAKFDADGSQIIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAER-EL 327 (807)
T ss_pred -------chhHHHHHHHHHHhccCCceEEEEEEEcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEechHHHHHHH-HH
Confidence 222222 33344455566667788889999999866654 45667889999999999999999998866 33
Q ss_pred hhhhhhhccccccccc---cccCCCCCCcc-cccccccccCc-hhHHHHhhhcccC
Q 048754 179 PVFKENCNQQYDQSAQ---YFSGGHSPLSQ-HQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 179 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
+..+++++..++.+.. ++|.+..++++ |+++++++|++ ++++|..+..+.+
T Consensus 328 ~~se~~l~~l~~~~~~~i~~~d~~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~ 383 (807)
T PRK13560 328 LEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDP 383 (807)
T ss_pred HHHHHHHHHHHHhCcccEEEEcCCCCEEEecCHHHHHHhCCCHHHHcCCCccccCh
Confidence 4445556666554433 33666666665 67888899999 7788766655433
|
|
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=102.55 Aligned_cols=109 Identities=25% Similarity=0.310 Sum_probs=90.8
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
++++++++++|. +|+|+++|+++.+++|++.++++|++..++.+ +...+.....+.+++..+.....+
T Consensus 2 ~~~p~~i~v~D~---~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (110)
T PF08448_consen 2 DSSPDGIFVIDP---DGRIVYANQAAAELFGVSPEELIGRSLFDLLP---------PEDREEFQAALRRALAGGEPVFFE 69 (110)
T ss_dssp HHCSSEEEEEET---TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSC---------CGCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCceeEEECC---CCEEEEEHHHHHHHhCCCHHHHhhccchhccc---------cchhhhhHHHHHHhhccCceEEEE
Confidence 348999999999 99999999999999999999999999888754 223455666777777777766655
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
..... +|...|+.+.+.|+.+.+|.+.+++.+.+|||++|+
T Consensus 70 ~~~~~-~~~~~~~~~~~~Pi~~~~g~~~g~~~~~~DiT~~rr 110 (110)
T PF08448_consen 70 EILLR-DGEERWFEVSISPIFDEDGEVVGVLVIIRDITERRR 110 (110)
T ss_dssp EEECT-TSCEEEEEEEEEEEECTTTCEEEEEEEEEEECCHHH
T ss_pred EEEee-cCCcEEEEEEEEEeEcCCCCEEEEEEEEEECchhhC
Confidence 55444 899999999999999999999999999999999873
|
The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A. |
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-12 Score=131.45 Aligned_cols=172 Identities=12% Similarity=0.041 Sum_probs=118.0
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc-ceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI-EFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 129 (625)
++++++++++|. +|+|+++|+++++++||+.+|++|++..++.+ |+..+.....+...+..+. .+..
T Consensus 3 ~~~~d~~~~~d~---~g~i~~~n~~~~~~~g~~~~el~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 70 (442)
T TIGR02040 3 ATAADVTLLLDA---EGVVREVAANPHHPSFEQLSEWEGRRWEEIVT---------AESVEKFELRLSEALRTGRGAVRV 70 (442)
T ss_pred cccCcEEEEECC---CCcEEEEEECCCcccccccccCCCCcHhHhhC---------cchHHHHHHHHHHHhccCCCcceE
Confidence 348899999999 99999999999999999999999999887754 3333333333444444433 3444
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc-------------chhhhhhhhccccccccc--
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV-------------SYPVFKENCNQQYDQSAQ-- 194 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~-------------~~~~~~~~~~~~~~~~~~-- 194 (625)
+.....++|..+|+.++..++.+. .+++++.+|||+.++.+++ .+...+++++..++.+..
T Consensus 71 e~~~~~~~g~~~~~~~~~~~~~~~----~~~~~i~rDi~~~~~~~~~l~~~~~~~e~~~~~l~~~e~r~~~l~e~~~~~i 146 (442)
T TIGR02040 71 ELNHIDPSSFELPMRFILVRLGAD----RGVLALGRDLRAVAELQQQLVAAQQAMERDYWTLREMETRYRVVLEVSSDAV 146 (442)
T ss_pred eeccCCCCCCccCeEEEEEEeCCC----CeEEEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceE
Confidence 555555666677777777766432 2567889999876554221 111223345555544432
Q ss_pred -cccC-CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHh
Q 048754 195 -YFSG-GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGS 238 (625)
Q Consensus 195 -~~~~-~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~ 238 (625)
++|. +..++++|+++++++||+ ++++|.++..++++++...+..
T Consensus 147 ~~~d~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~ 193 (442)
T TIGR02040 147 LLVDMSTGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELML 193 (442)
T ss_pred EEEECCCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHH
Confidence 3365 456779999999999999 8889888888888887665543
|
This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954). |
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-11 Score=132.77 Aligned_cols=171 Identities=23% Similarity=0.316 Sum_probs=127.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. +++++++.|. +|+++++|+++++++||++++++|+....+.. +.........+.+.+..+
T Consensus 7 ~~i~~~--~~~~i~~~d~---~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 72 (494)
T TIGR02938 7 RQTVDQ--APLAISITDL---KANILYANDAFTRITGYTKEEIIGKNESVLSN---------HTTPPEVYQALWGSLAEQ 72 (494)
T ss_pred HHHHHh--CCceEEEECC---CCcEEEEchhheeecCCCHHHHhCCCchhhcC---------CCCCHHHHHHHHHHHHhC
Confidence 344445 8899999999 99999999999999999999999987655532 223444556666667777
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccc---cccccCCCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQS---AQYFSGGHS 201 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 201 (625)
..+..+....+++|+.+|+...+.|+.+.+|.+.+++++.+|||+++++++. ++..++.++..++.. ..+++.+..
T Consensus 73 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt~~k~~e~~-l~~~~~~~~~~~~~~~~~i~~~d~~~~ 151 (494)
T TIGR02938 73 KPWAGKLLNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDITELHRLEQV-VANQKLLIESVVDAAPVAFVLLDPTGR 151 (494)
T ss_pred CcccceeeccCCCccchhhheeeEEEECCCCCEEEEEEehhhhhHHHHHHHH-HHHHHHHHHHHHhcccceEEEEcCCCC
Confidence 7777788888899999999999999999999999999999999999877652 222333344444333 334477777
Q ss_pred CCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 202 PLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++++|+++++++|+. .+..+..+...+++
T Consensus 152 i~~~N~~~~~~~g~~~~~~~~~~~~~~~~~ 181 (494)
T TIGR02938 152 VILDNQEYKKLATDLRVKEPAHTVLDLLRE 181 (494)
T ss_pred EEEechhHHHhhchhhhhHHHHHHHHHhhH
Confidence 779999999999987 55554444444443
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. |
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-12 Score=149.46 Aligned_cols=189 Identities=17% Similarity=0.033 Sum_probs=140.6
Q ss_pred ecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCC
Q 048754 29 EGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRH 106 (625)
Q Consensus 29 ~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~ 106 (625)
.+.+++++.|++++..+..++ .+..+++++.+|. ++.++++|+++.+++|+++++..+... +. +..|
T Consensus 393 ~DITerk~~e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~l~G~~~~~~~~~~~--~~------~~~~ 461 (1092)
T PRK09776 393 EDINELKRTEQVNERLMERITLANEAGGIGIWEWDL---KPNIISWDKRMFELYEIPPHIKPTWQV--WY------ACLH 461 (1092)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEec---CCCeEeeCHHHHHHhCCCcccCCCHHH--HH------HhcC
Confidence 455666766666554433222 3448889999999 999999999999999999888433211 10 1134
Q ss_pred CCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhc
Q 048754 107 PLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCN 186 (625)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~ 186 (625)
|++.......+.+.+..+..+..|.+.+++|| ..|+.....++.+.+|.+.+++++.+|||++|++++. ++..+++++
T Consensus 462 p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG-~~w~~~~~~~~~d~~G~~~~~ig~~~DITerk~~e~~-L~~~~~~l~ 539 (1092)
T PRK09776 462 PEDRQRVEKEIRDALQGRSPFKLEFRIVVKDG-VRHIRALANRVLNKDGEVERLLGINMDMTEVRQLNEA-LFQEKERLH 539 (1092)
T ss_pred HhHHHHHHHHHHHHHhcCCCeeEEEEEEcCCc-eEEEEEeeEEEECCCCCEEEEEeeeeehhHHHHHHHH-HHHHHHHHH
Confidence 55555555667777778888889999999999 9999999999999999999999999999999987652 233444455
Q ss_pred cccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
..++.... ..|.+..++++|+++++++|++ ++++|.++..+++.
T Consensus 540 ~~l~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~ 587 (1092)
T PRK09776 540 ITLDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHI 587 (1092)
T ss_pred HHHhccccEEEEECCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHHccc
Confidence 44444333 3477777789999999999999 88888777666543
|
|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-11 Score=97.67 Aligned_cols=108 Identities=29% Similarity=0.401 Sum_probs=85.2
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|. +|+|+++|+++++++|+++++++|++..++.. +.+.......+.+.+..+.
T Consensus 5 ~i~~~--~~~~i~~~d~---~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 70 (113)
T PF00989_consen 5 AILEN--SPDGIFVIDE---DGRILYVNQAAEELLGYSREELIGKSLFDLIH---------PEDRRELRERLRQALSQGE 70 (113)
T ss_dssp HHHHC--SSSEEEEEET---TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCS---------GGGHHHHHHHHHHHHHHCC
T ss_pred HHHhc--CCceEEEEeC---cCeEEEECHHHHHHHccCHHHHcCCcHHHhcC---------chhhHHHHHHHHHHHHcCC
Confidence 34444 8999999999 99999999999999999999999999888753 2222345566666666655
Q ss_pred ceEE-EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 126 EFQG-ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 126 ~~~~-e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
.... +.....++|+.+|+.+...|+.+.++.+.+++++.+||
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 71 SGESFEVRFRLRDGRPRWVEVRASPVRDEDGQIIGILVIFRDI 113 (113)
T ss_dssp HECEEEEEEEETTSCEEEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred CceeEEEEEEecCCcEEEEEEEEEEEEeCCCCEEEEEEEEEeC
Confidence 4443 44444469999999999999999999999999999997
|
PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A .... |
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=144.83 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=133.5
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|++.|. +|+++++|+++++++||+++|++|++..++. ||++.......+.+.+..
T Consensus 285 ~~~l~e~--~~~~i~~~d~---dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~---------~~~d~~~~~~~~~~~~~~ 350 (1092)
T PRK09776 285 FRNAMEY--SAIGMALVGT---EGQWLQVNKALCQFLGYSQEELRGLTFQQLT---------WPEDLNKDLQQVEKLLSG 350 (1092)
T ss_pred HHHHHHh--CCceEEEEcC---CCcEEehhHHHHHHhCCCHHHHccCCceecc---------CcchhHhHHHHHHHHHcC
Confidence 3444444 8999999999 9999999999999999999999999877664 344444444444444332
Q ss_pred C-cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccc---cccCC
Q 048754 124 G-IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQ---YFSGG 199 (625)
Q Consensus 124 ~-~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~ 199 (625)
. ..+..+.+..++||+..|+.....++.+.+|.+.+++++.+|||++|++|+. .+..+++++..++.... .+|.+
T Consensus 351 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~g~~~~~i~~~~DITerk~~e~~-l~~~~~~~~~~~~~~~~~i~~~d~~ 429 (1092)
T PRK09776 351 EINSYSMEKRYYRRDGEVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQV-NERLMERITLANEAGGIGIWEWDLK 429 (1092)
T ss_pred CccceeeeeEEEcCCCCEEEEEEEEEEEECCCCCEeeehhhHHhhHHHHHHHHH-HHHHHHHHHHHHHhcCceEEEEecC
Confidence 2 3456788889999999999999999999999999999999999999987662 33344445544433322 33777
Q ss_pred CCCCcccccccccccCc-hhHHH-HhhhcccCchhhhhHHh
Q 048754 200 HSPLSQHQDICGILQLS-DEVLA-HNILSRLTPRDVASIGS 238 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~-~~~~~~~~~~~~~~~~~ 238 (625)
...+++|+++++++|++ ++..+ ..+...++|++...+..
T Consensus 430 ~~~~~~n~~~~~l~G~~~~~~~~~~~~~~~~~p~d~~~~~~ 470 (1092)
T PRK09776 430 PNIISWDKRMFELYEIPPHIKPTWQVWYACLHPEDRQRVEK 470 (1092)
T ss_pred CCeEeeCHHHHHHhCCCcccCCCHHHHHHhcCHhHHHHHHH
Confidence 77789999999999999 44322 23556788887766543
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-10 Score=109.64 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=83.3
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
|..+.++.+++++.+ ++++||+||.+......+++++||. .+++|+.....|..|.+|.+|+++++++++|+|+++-
T Consensus 19 ~~~~~~~~~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~--~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 19 GFGVKPKNRETSVTI-GDKTYVIGGNHEGNTLSIGVQILDK--ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CccCCCCCcceeEEE-CCEEEEEcccCCCccccceEEEEEC--CCCcEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 445678899999999 9999999998876556899999999 7999999999999999999999999998899999988
Q ss_pred CCCCCccCceEEEEccCCCC
Q 048754 603 TGEEWVLNELHELCLASKQD 622 (625)
Q Consensus 603 ~~~~~~~~d~~~~~~~~~~~ 622 (625)
.+.+ +++|.|.++|.--
T Consensus 96 ~~~~---~~~w~l~~~t~~~ 112 (398)
T PLN02772 96 SAPD---DSIWFLEVDTPFV 112 (398)
T ss_pred CCCc---cceEEEEcCCHHH
Confidence 7765 8999999987543
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.4e-10 Score=76.21 Aligned_cols=50 Identities=22% Similarity=0.421 Sum_probs=44.9
Q ss_pred CCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCc
Q 048754 305 SRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGR 358 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r 358 (625)
||.+|++++++++|||+||.......++++++||+.+ ++|+++ +++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~--~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQL--PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCC--CcEEEC--CCCCCCC
Confidence 5899999999999999999977677899999999999 799988 6788776
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=75.12 Aligned_cols=49 Identities=35% Similarity=0.601 Sum_probs=43.2
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCCCCCCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPR 410 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r 410 (625)
||.+|+++++ +++|||+||... ...++++++||+.|+ +|+.+++| |.+|
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~m--p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETN--TWEQLPPM--PTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCCC--cEEECCCC--CCCC
Confidence 6889999888 568999999987 678999999999999 99999987 6665
|
|
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-10 Score=117.67 Aligned_cols=161 Identities=12% Similarity=0.111 Sum_probs=106.3
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++++++|. .+|+|+++|+++++++||++++++|++...+.+ |.+.......+......+.....
T Consensus 139 ~e~~~~~i~~~d~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~---------~~~~~~~~~~l~~~~~~g~~~~~ 207 (442)
T TIGR02040 139 LEVSSDAVLLVDM--STGRIVEANSAAAALLGGVGQSLVGRAFPQEFE---------GRRREELMLTLRNVRATGSAAPV 207 (442)
T ss_pred HhhCCceEEEEEC--CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCC---------HHHHHHHHHHHHHHHhcCCCcce
Confidence 3448999999985 159999999999999999999999998776643 33333344455555555554444
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccccc---ccccccCCCCCCccc
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQ---SAQYFSGGHSPLSQH 206 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~n 206 (625)
+.. .++|...| .+.+.++.. ++. ..+++..+||++++++++. .+++++..++. ...++|.++.++++|
T Consensus 208 ~~~--~~~~~~~~-~~~~~~~~~-~~~-~~~l~~~~dit~~~~~e~~----~~~~~~~l~e~~~d~I~v~D~~G~I~~~N 278 (442)
T TIGR02040 208 RIL--LRRSQKRL-LVVVSVFRQ-DGE-SLFLCQLSPAGATQPVGDE----LSENLARLYHEAPDAIVFSDADGTIRGAN 278 (442)
T ss_pred EEE--EcCCCeEE-EEEEEEEEe-CCc-eEEEEEEcccchhhhhhHH----HHHHHHHHHHhCCceEEEEcCCCcEEehh
Confidence 443 33343333 345555553 333 3567778899998766541 22234444433 333457777788999
Q ss_pred ccccccccCc--hhHHHHhhhcccCc
Q 048754 207 QDICGILQLS--DEVLAHNILSRLTP 230 (625)
Q Consensus 207 ~~~~~~~g~~--~e~~~~~~~~~~~~ 230 (625)
+++++++|++ ++++|.++..++++
T Consensus 279 ~a~~~l~G~~~~~~l~G~~~~~~~~~ 304 (442)
T TIGR02040 279 EAFLELTDSSSLEAVRGRTLDRWLGR 304 (442)
T ss_pred HHHHHHhCCCChHHHcCCCHHHHhCC
Confidence 9999999996 56888877666653
|
This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954). |
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-09 Score=108.67 Aligned_cols=117 Identities=38% Similarity=0.642 Sum_probs=95.9
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++++++|....+|.++++|+++++++||+.++++|++...+.. +.........+...+..+..+..
T Consensus 49 ~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~ 119 (361)
T PRK13559 49 MEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQG---------AATDPIAVAKIRAAIAAEREIVV 119 (361)
T ss_pred HHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcC---------CCCCHHHHHHHHHHhccCCceEE
Confidence 344889999999622356899999999999999999999998766642 22344445566667777777778
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+....++||..+|+.+...|+.+.+|.+.+++++.+|||++|++++
T Consensus 120 e~~~~~~dG~~~~~~~~~~~i~d~~G~~~~~v~~~~DITerk~~e~ 165 (361)
T PRK13559 120 ELLNYRKDGEPFWNALHLGPVYGEDGRLLYFFGSQWDVTDIRAVRA 165 (361)
T ss_pred EEEEEcCCCCEEEEEEEEEEEEcCCCCEEEeeeeeeehhcchhhHH
Confidence 8888899999999999999999999999999999999999987654
|
|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=125.16 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=133.4
Q ss_pred EEecCCCCccccceeeecccccc--cCCCCeeEEEecCCCCCCCEEEE-ehHHHHHhCCCchhhcCCCCcccccCCcc--
Q 048754 27 SFEGGGGGGGDDTELSLKPGLLF--YPTTPTSFVVADAFDPDFPIIYV-NKVFEIFTGYRADEVLGRNCRFLQYRDPR-- 101 (625)
Q Consensus 27 ~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~i~~~d~~~~~g~i~~~-N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-- 101 (625)
.+.+.+++++.|.+++..+..+. ++.++++++++|. +|.++++ |+++++++||++++++|++...+.+....
T Consensus 313 ~~~DITerk~~e~~L~~se~~l~~l~~~~~~~i~~~d~---~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~ 389 (807)
T PRK13560 313 AITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDA---DGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEF 389 (807)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHHhCcccEEEEcC---CCCEEEecCHHHHHHhCCCHHHHcCCCccccChhhhhhh
Confidence 56788888888877765443332 4458999999999 9999987 67888899999999999876554321100
Q ss_pred ----cccCCCCCChHHH--HHHHHHHHhCcceE-EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccC
Q 048754 102 ----AQRRHPLVDPVVV--SEIRRCLEEGIEFQ-GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 102 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
....+|+..+... ..+.+.+..+..+. .+....+++|...|+.+...|+.+.+|.+.+++++.+|||++|++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~p~~d~~g~~~~~~~~~~DITerk~~E 469 (807)
T PRK13560 390 WCGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPLHDADGNIIGAIALLVDITERKQVE 469 (807)
T ss_pred hhchhhhcCCcCCcchhhhhhHHHHHhcCCcccCceEEEEcCCCCeEEEEEEEeeeECCCCCEEEEEEEeehhhhHHHHH
Confidence 0011122111111 11233345555443 4677788999999999999999999999999999999999999876
Q ss_pred Ccchhhhhhhhccccccccc---cccCC-CCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHHh
Q 048754 175 HVSYPVFKENCNQQYDQSAQ---YFSGG-HSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIGS 238 (625)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~~ 238 (625)
+.. ++ ....++.+.. .++.. ...+.+|.+...++||+ +++++ ..+...++|++...+..
T Consensus 470 ~~L----~~-~~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~~~~p~d~~~~~~ 535 (807)
T PRK13560 470 EQL----LL-ANLIVENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAA 535 (807)
T ss_pred HHH----HH-HHHHHhcCCceEEEEecCCCceEEEecchhhhcCCCHHHhhcccchHhhhcChhhHHHHHH
Confidence 522 11 1122222222 12222 23345666677889999 66654 23556788888766543
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-08 Score=90.87 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCC-Cc-----eEEcC-CCCCCCCCCcceEEEEC---CcEEEEEcCCcCCC-----
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDK-PM-----WREIP-TSWSPPSRLGHSLSVYG---RTKVLMFGGLAKSG----- 486 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~-~~-----W~~~~-~~~~p~~r~~~~~~~~~---~~~l~v~GG~~~~~----- 486 (625)
..+|.||.+.+++.++++|+..+++.. ++ .++-. .+..|.+||+|++.++. +...++|||...-.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 467779999999999999999876543 11 11111 14579999999998874 33578999986421
Q ss_pred -----CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC-CCCCCCcEEE
Q 048754 487 -----HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA-GLHSPSQLFL 560 (625)
Q Consensus 487 -----~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~~v~~ 560 (625)
........++.+|++.+..+-..++.+ ...-++|.+++- +|.+|++||..- +....+.+++
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl------------~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~r 186 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL------------QDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYR 186 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhh------------cCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEE
Confidence 122345788889988543222233322 456678888888 999999999853 3344788888
Q ss_pred EeCC--CCCCCeEEEcCCCCCCCCCCcceEEEEC--CcEEEEEcCcCCCCC
Q 048754 561 LDPS--EEKPSWRILNVPGQPPKFAWGHSTCVVG--GTRVLVLGGHTGEEW 607 (625)
Q Consensus 561 ~d~~--~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~~~i~i~GG~~~~~~ 607 (625)
+.++ ..+..-+ + ..++.+..-.++++.. .+..+|+|||..+.+
T Consensus 187 lkVdLllGSP~vs-C---~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 187 LKVDLLLGSPAVS-C---TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred EEEeecCCCceeE-E---EECCCCceEeeeeEeecCCCceEEEecccccce
Confidence 7762 1111111 1 1234444455555553 479999999987753
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=117.20 Aligned_cols=122 Identities=34% Similarity=0.599 Sum_probs=101.0
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
.+..+++. ++++|+++|....+|+|+++|++|++++||+.+|++|++...+.. |.........+...+.
T Consensus 31 ~~~~~~~~--~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~---------~~~~~~~~~~~~~~~~ 99 (540)
T PRK13557 31 IFFAAVET--TRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQG---------PETDRATVAEVRDAIA 99 (540)
T ss_pred HHHHHHHh--CcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcC---------CCCCHHHHHHHHHHHH
Confidence 34444444 889999998533478999999999999999999999999877753 3445556667777777
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+..+..+.+..+++|+.+|+.+.+.|+.+.+|.+++++++.+|||+++++++
T Consensus 100 ~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~~~g~~~~~~~~~~dit~~~~~e~ 152 (540)
T PRK13557 100 ERREIATEILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAED 152 (540)
T ss_pred cCCCceEEEEEEeCCCCEEEEEEEEEEeECCCCCEEEEEEEecChHHHHHHHH
Confidence 77777788888899999999999999999999999999999999999887654
|
|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6e-10 Score=125.76 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=96.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+++++++|++.|. +|+|+++|+++++++|++.++++|++..+++. |.............+..+.....
T Consensus 161 l~~~~~~i~~~D~---~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~ 228 (779)
T PRK11091 161 LDASPDLVYYRNE---DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYS---------PEAAEKVIETDEKVFRHNVSLTY 228 (779)
T ss_pred HhcCcceEEEECC---CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCC---------HHHHHHHHHHHHHHHhcCCCeEE
Confidence 3449999999999 99999999999999999999999998887753 22233344445556667777888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.....++|+..|+.+...|+.+.+|.+.+++++.+|||++|++++
T Consensus 229 e~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~k~~e~ 274 (779)
T PRK11091 229 EQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQD 274 (779)
T ss_pred EEEEEcCCCCEEEEEEEeeeEEcCCCCEEEEEEEEeehhHHHHHHH
Confidence 8888899999999999999999999999999999999999988765
|
|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-09 Score=122.47 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=113.9
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC----cc
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG----IE 126 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 126 (625)
+.++++++++|. +|+|+++|+++++++||+++|++|++...+.+++ ........+......+ ..
T Consensus 19 e~~~~~i~~~d~---~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 86 (799)
T PRK11359 19 EQNMMGAVLINE---NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRD---------LRPAHPEYIRHNREGGKARVEG 86 (799)
T ss_pred HhhcCcEEEEcC---CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCcc---------ccccchHHHhhhhccCCccccc
Confidence 348889999999 9999999999999999999999999887775422 2222222223333222 23
Q ss_pred eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccc---ccccccccCCCCCC
Q 048754 127 FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQY---DQSAQYFSGGHSPL 203 (625)
Q Consensus 127 ~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 203 (625)
+..+.+.+++||..+|+.+...++. .+|. ..++++.+|||++++.++. ++.+...+ .....+++.+..++
T Consensus 87 ~~~e~~~~~~dG~~~~v~~~~~~~~-~~g~-~~~~~~~~DiT~~~~~~~~-----~~~~~~~~~~~~~~i~~~d~~g~i~ 159 (799)
T PRK11359 87 MSRELQLEKKDGSKIWTRFALSKVS-AEGK-VYYLALVRDASVEMAQKEQ-----TRQLIIAVDHLDRPVIVLDPERRIV 159 (799)
T ss_pred cceeeEEecCCcCEEEEEEEeeeec-cCCc-eEEEEEEeeccchhhhHHH-----HHHHHHHHhcCCCcEEEEcCCCcEE
Confidence 3447788899999999999988874 4455 4578899999988765441 11222222 22333447777788
Q ss_pred cccccccccccCc-hhHHHHhhhcccCc
Q 048754 204 SQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 204 ~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++|+++++++|++ ++++|..+..++++
T Consensus 160 ~~N~~~~~l~G~~~~e~~g~~~~~~~~~ 187 (799)
T PRK11359 160 QCNRAFTEMFGYCISEASGMQPDTLLNI 187 (799)
T ss_pred EEChhhHhhhCCCHHHHCCCChHHhcCC
Confidence 9999999999999 88887777666553
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=71.58 Aligned_cols=47 Identities=47% Similarity=0.789 Sum_probs=40.9
Q ss_pred CCEEEEEccCC--CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE
Q 048754 368 GSWLVVFGGCG--RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII 418 (625)
Q Consensus 368 ~~~iyv~GG~~--~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~ 418 (625)
++++|||||.. ....++++|+||+.++ +|+++.+. |.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~--~W~~~~~~--P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN--TWTRIGDL--PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC--EEEECCCC--CCCccceEEEEC
Confidence 46899999998 5668999999999999 99999654 889999999763
|
|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-09 Score=113.85 Aligned_cols=116 Identities=44% Similarity=0.712 Sum_probs=97.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++.++++.|....+|.++++|+++++++||++++++|++...+.. +.........+...+..+.....+
T Consensus 155 ~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e 225 (665)
T PRK13558 155 DEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQG---------EDTNEERVAELREAIDEERPTSVE 225 (665)
T ss_pred hcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcC---------CCccHHHHHHHHHHHhcCCCeEEE
Confidence 34889999987433378999999999999999999999998766643 233445556666777777888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.++++|..+|+.+...|+.+.+|.+.+++++.+|||++|+.|+
T Consensus 226 ~~~~~~dG~~~~~~~~~~pi~d~~G~~~~~vgi~~DITerk~~E~ 270 (665)
T PRK13558 226 LRNYRKDGSTFWNQVDIAPIRDEDGTVTHYVGFQTDVTERKEAEL 270 (665)
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCcHHHHHHH
Confidence 999999999999999999999999999999999999999998765
|
|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=80.33 Aligned_cols=90 Identities=31% Similarity=0.378 Sum_probs=69.7
Q ss_pred EEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH-HHHhCcceEEEEEEEeecCcceeEEEEE
Q 048754 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR-CLEEGIEFQGELLNFKKDGTPLVNRLRL 147 (625)
Q Consensus 69 i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~dG~~~~~~~~~ 147 (625)
|+++|+.+.+++||+++++ +....... .+..||++.+.....+.+ ....+..+..+++++++||+..|+....
T Consensus 1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~-----~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~ 74 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEI-GKPDFEEW-----LERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRG 74 (91)
T ss_dssp -EEE-THHHHHHTS-HHHH-TCBEHHHH-----HHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEE
T ss_pred CEEEeHHHHHHhCCCHHHh-ccCCHHHH-----HhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEE
Confidence 6899999999999999999 65421111 122578888888888888 6777889999999999999999999999
Q ss_pred EEeeCCCCCEEEEEEEE
Q 048754 148 APIRDDDGTVTHIIGIQ 164 (625)
Q Consensus 148 ~~~~d~~g~~~~~i~~~ 164 (625)
.++.|.+|.+..++|++
T Consensus 75 ~~~~d~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 75 RPIFDENGKPIRIIGVI 91 (91)
T ss_dssp EEEETTTS-EEEEEEEE
T ss_pred EEEECCCCCEEEEEEEC
Confidence 99999999999999874
|
The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B. |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-09 Score=70.45 Aligned_cols=48 Identities=44% Similarity=0.816 Sum_probs=41.0
Q ss_pred CCEEEEEcCcC-CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 420 GSKLVVSGGCT-DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 420 ~~~iyv~GG~~-~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
++++|||||.. .....++++|+||+.+.+ |+++.. .|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~--W~~~~~--~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNT--WTRIGD--LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCE--EEECCC--CCCCccceEEEEC
Confidence 46899999998 467789999999997765 999954 8999999999874
|
|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.7e-09 Score=117.19 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=104.8
Q ss_pred EecCCCCccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCC
Q 048754 28 FEGGGGGGGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHP 107 (625)
Q Consensus 28 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~ 107 (625)
..+.+.+++.+++++..+.++ +.++++++++|. +|+++++|+++++++||+.++++|+....+.. +|
T Consensus 122 ~~DiT~~~~~~~~~~~~~~~~--~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~--------~~ 188 (799)
T PRK11359 122 VRDASVEMAQKEQTRQLIIAV--DHLDRPVIVLDP---ERRIVQCNRAFTEMFGYCISEASGMQPDTLLN--------IP 188 (799)
T ss_pred EeeccchhhhHHHHHHHHHHH--hcCCCcEEEEcC---CCcEEEEChhhHhhhCCCHHHHCCCChHHhcC--------CC
Confidence 455565555554444443334 448999999999 99999999999999999999999998776642 12
Q ss_pred CCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 108 LVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.........+...+..+..+..+.+..+++|...|+.+...|+.+.+|.+.+++++.+|||+++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~v~d~~g~~~~~~~~~~DITerk~~e~ 256 (799)
T PRK11359 189 EFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQ 256 (799)
T ss_pred CCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEEEEEeeeeeeecCCCceeEEEEEeehhhhHHHHHH
Confidence 33444455555666666677778888899999999999999999999999999999999999987655
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-09 Score=70.85 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=30.7
Q ss_pred CccceeEEEEcCCEEEEEccCCCC-CccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGRQ-GLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++.+.+++||||||.+.. ..++++|+||+.++ +|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCCC
Confidence 699999999876799999999876 58999999999999 99999654
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.9e-08 Score=95.86 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCC
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
-+.|+..++++.+++++||+||.+.....++.+|+||..+ .+|......+ .|.||.+|+++++++.+|+|+++.+..
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 3447899999999999999999876555788999999988 7999876544 788999999999988999999986654
Q ss_pred CccccEEEEECCCC
Q 048754 381 GLLNDVFVLDLDAK 394 (625)
Q Consensus 381 ~~~~~~~~~d~~t~ 394 (625)
-.++|.+.++|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 378999998875
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.8e-09 Score=70.31 Aligned_cols=46 Identities=33% Similarity=0.668 Sum_probs=30.3
Q ss_pred CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC
Q 048754 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 409 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
||.+|+++.+.++++|||||....+..++++|+||+++.+ |+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~--W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNT--WTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTE--EEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCE--EEECCC
Confidence 6899999999667999999998877899999999987766 999954
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-08 Score=65.34 Aligned_cols=40 Identities=33% Similarity=0.538 Sum_probs=36.0
Q ss_pred CCCCCcccceEEECCEEEEEcccCC-CCCCCCCeEEEeccC
Q 048754 302 VEPSRCNFSACAAGNRLVLFGGEGV-NMQPMDDTFVLNLDA 341 (625)
Q Consensus 302 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~~~ 341 (625)
+|++|.+|++++++++|||+||... ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4788999999999999999999983 677899999999875
|
|
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-08 Score=110.31 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=87.2
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++++|+++|. +|+|+++|+++++++||+.++++|++..+++. +|.+.......+...+..+..+..
T Consensus 117 ~~~~~~gI~i~D~---~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (663)
T PRK10060 117 VSEANSVIVILDS---RGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFM--------SRREAAASRRNIRGFFRSGNAYEV 185 (663)
T ss_pred HhhCCceEEEEeC---CCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhC--------ChhhHHHHHHHHHHHHhcCCceEE
Confidence 3448999999999 99999999999999999999999998766642 122333344556666777888888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCC-CEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDG-TVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g-~~~~~i~~~~Dit~~~~~e~ 175 (625)
|.+..+++|+.+|+.....+ .+..| ....++++.+|||++++.++
T Consensus 186 e~~~~~~~G~~~~~~~~~~~-~~~~g~~~~~~i~~~~DITe~k~~e~ 231 (663)
T PRK10060 186 ERWIKTRKGQRLFLFRNKFV-HSGSGKNEIFLICSGTDITEERRAQE 231 (663)
T ss_pred EEEEEeCCCCEEEEEeeeEE-EcCCCCceEEEEEEEEechHHHHHHH
Confidence 99999999988887655443 44444 34567889999999987654
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-08 Score=67.10 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=39.6
Q ss_pred CccceeEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++++ +++|||+||... ...++++++||+.++ +|+.+++|
T Consensus 1 pR~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETN--TWEELPPM 46 (47)
T ss_dssp -BBSEEEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTT--EEEEEEEE
T ss_pred CCccCEEEEE-CCEEEEEeeecccCceeeeEEEEeCCCC--EEEEcCCC
Confidence 5888999988 668999999987 778999999999999 99999865
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=73.77 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=102.3
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCC-CceEEcc------cCCCCCCccceeEEEE---cCCEEEEEccCCC-------
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAAN-PEWRRVS------VKSSPPGRWGHTLSSL---NGSWLVVFGGCGR------- 379 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~-~~W~~~~------~~~~p~~r~~~~~~~~---~~~~iyv~GG~~~------- 379 (625)
..+|+||..++++.++.+|++.+.+.. ++=..+. ....|.+|++|++.++ .+.-+++|||.+-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 578899999999999999999987653 2222221 1357999999999997 2335789999841
Q ss_pred -C------CccccEEEEECCCCCCEEE--EcCCCCCCCCCccceEEEEcCCEEEEEcCcCC-CCceeceEEEEecC----
Q 048754 380 -Q------GLLNDVFVLDLDAKQPTWI--EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD-AGVLLSDTYLLDLT---- 445 (625)
Q Consensus 380 -~------~~~~~~~~~d~~t~~~~W~--~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~---- 445 (625)
. .+...++.+|++-+ ..+ .++.. ..+..+|.+.+- ++.+|++||..- ++.....++.+.++
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~tah~lpEl--~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkVdLllG 194 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTAHTLPEL--QDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKVDLLLG 194 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--ccccccchhh--cCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEEeecCC
Confidence 1 13557899999877 444 34432 556778888777 559999999643 23344456665532
Q ss_pred CCCCceEEcCCCCCCCCCCcceE--EEECCcEEEEEcCCcCCCCc
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSL--SVYGRTKVLMFGGLAKSGHL 488 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~--~~~~~~~l~v~GG~~~~~~~ 488 (625)
+...+.+.+. .+..-.++ +..+....+|+||+..+...
T Consensus 195 SP~vsC~vl~-----~glSisSAIvt~~~~~e~iIlGGY~sdsQK 234 (337)
T PF03089_consen 195 SPAVSCTVLQ-----GGLSISSAIVTQTGPHEYIILGGYQSDSQK 234 (337)
T ss_pred CceeEEEECC-----CCceEeeeeEeecCCCceEEEeccccccee
Confidence 1111122222 12222222 22344589999999876654
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=64.82 Aligned_cols=45 Identities=36% Similarity=0.615 Sum_probs=38.9
Q ss_pred CccceeEEEEcCCEEEEEccC---CCCCccccEEEEECCCCCCEEEEcCCC
Q 048754 357 GRWGHTLSSLNGSWLVVFGGC---GRQGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
||.+|+++++ +++|||+||. ......+++++||+.++ +|+.++.+
T Consensus 1 ~r~~hs~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~--~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTETN--QWTELSPM 48 (49)
T ss_pred CccceEEEEE-CCEEEEECCcccCCCCcccceeEEEECCCC--EEeecCCC
Confidence 5889999988 6699999999 45557899999999999 99999764
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.3e-08 Score=65.47 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=39.2
Q ss_pred CCcccceEEECCEEEEEccc--CCCCCCCCCeEEEeccCCCCceEEcc
Q 048754 305 SRCNFSACAAGNRLVLFGGE--GVNMQPMDDTFVLNLDAANPEWRRVS 350 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~~~~~~~~~~~~~W~~~~ 350 (625)
||.+|++++++++|||+||+ .......+++++||+.+ .+|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t--~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTET--NQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCC--CEEeecC
Confidence 58999999999999999999 45567789999999999 7999884
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-08 Score=66.80 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=39.8
Q ss_pred CCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcc
Q 048754 305 SRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVS 350 (625)
Q Consensus 305 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 350 (625)
||.+|++++++++|||+||.......++++++||+.+ ++|+.+.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPET--NTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTT--TEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCC--CEEEEcC
Confidence 5899999999999999999988778899999999998 8999873
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=61.81 Aligned_cols=40 Identities=38% Similarity=0.590 Sum_probs=35.3
Q ss_pred CCCCCCcceEEEECCcEEEEEcCcCC-CCCccCceEEEEccC
Q 048754 579 PPKFAWGHSTCVVGGTRVLVLGGHTG-EEWVLNELHELCLAS 619 (625)
Q Consensus 579 ~p~~r~~~~~~~~~~~~i~i~GG~~~-~~~~~~d~~~~~~~~ 619 (625)
.|.+|.+|++++++ ++|||+||.+. +...++|+|+|++.+
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999997 59999999994 666899999999976
|
|
| >TIGR00229 sensory_box PAS domain S-box | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=74.30 Aligned_cols=111 Identities=29% Similarity=0.384 Sum_probs=82.0
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cceEEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEFQGE 130 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e 130 (625)
.++++++++|. ++.++++|+++.+++|++.++++|.....+.. +.........+...+... .....+
T Consensus 11 ~~~~~~~~~d~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (124)
T TIGR00229 11 SSPDAIIVIDL---EGNILYVNPAFEEIFGYSAEELIGRNVLELIP---------EEDREEVRERIERLLEGEREPVSEE 78 (124)
T ss_pred hCCceEEEEcC---CCcEEEEchHHHHHhCCChHHhcCcchhhhcC---------hhhhHHHHHHHHHHHcCCCCCcceE
Confidence 37889999999 99999999999999999999999987766543 222233333344444422 223334
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....++|...|+.....++. .+|...+++++..|||++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dit~~~~~~~ 122 (124)
T TIGR00229 79 RRVRRKDGSEIWVEVSVSPIR-TNGGELGVVGIVRDITERKQAEE 122 (124)
T ss_pred eeeEcCCCCEEEEEEEEeehh-hCCCeeEEEEEeeehhHHHHHHh
Confidence 444577899999999999988 77888899999999999876543
|
The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. |
| >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-06 Score=65.12 Aligned_cols=102 Identities=27% Similarity=0.386 Sum_probs=79.3
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
+++++++|. ++.++++|+++.+++|++.++++|.....+.. +.........+......+.....+...
T Consensus 2 ~~~i~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (103)
T cd00130 2 PDGVIVLDL---DGRILYANPAAEQLLGYSPEELIGKSLLDLIH---------PEDREELRERLENLLSGGEPVTLEVRL 69 (103)
T ss_pred CceEEEECC---CCcEEEECHHHHHHhCCCHHHHcCccHHHhcC---------CccchHHHHHHHHHHhcCcCeEEEEEE
Confidence 568889999 99999999999999999999999987765543 223334444455555545556667777
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
...+|...|+.+...++.+..+...+++++.+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 70 RRKDGSVIWVLVSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred EccCCCEEEEEEEEEEEecCCCCEEEEEEEEecC
Confidence 7788999999999999988888888888888775
|
Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=61.44 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=40.4
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE 419 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~ 419 (625)
+||++||......++++++||+.++ +|+.++++ |.+|..|+++.++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM--PTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC--CCccccceEEEeC
Confidence 4899999976667899999999999 99999987 8899999988774
|
|
| >PF12860 PAS_7: PAS fold | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=69.91 Aligned_cols=113 Identities=18% Similarity=0.105 Sum_probs=72.2
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhh-cCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEV-LGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.++||++.|. +++++++|++|.++++++.+.+ .|.+..++...........+......................
T Consensus 2 d~l~~Gv~v~D~---~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF12860_consen 2 DSLPQGVAVFDS---DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQPRSF 78 (115)
T ss_pred CCcCceEEEEcC---CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 458999999999 9999999999999999999988 787766553100000000011222333333333333333333
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....||. |+.+...|+.+ | +++.+.+|||++++.|+
T Consensus 79 --~~~~~dgr--~l~~~~~~~~~--G---g~v~~~~DVT~~~~~E~ 115 (115)
T PF12860_consen 79 --ELRLPDGR--WLEVRAQPLPD--G---GFVLTFTDVTERRRAEE 115 (115)
T ss_pred --EEECCCCE--EEEEEeEECCC--C---CEEEEEEeCCHHHHhcC
Confidence 33456776 66788888754 4 46788999999987653
|
|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=68.17 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=66.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+.+++++|. +++|.+.|+++.++++..+.+ +|++...+.. .........+.+.+..++....+..
T Consensus 8 ~~~~i~~vD~---~~~I~~~n~~a~~~f~~~~~~-iGr~l~~~~~----------~~~~~~l~~~i~~~~~~~~~~~~~~ 73 (106)
T PF13596_consen 8 MPIGIIFVDR---NLRIRYFNPAAARLFNLSPSD-IGRPLFDIHP----------PLSYPNLKKIIEQVRSGKEEEFEIV 73 (106)
T ss_dssp SSSEEEEEET---TSBEEEE-SCGC-SS---GGG-TTSBCCCSS-----------HHHHHHHHHHHHHHHTTSBSEEEEE
T ss_pred CCCCEEEEcC---CCeEEEeChhHhhhcCCChHH-CCCCHHHcCC----------ccchHHHHHHHHHHHcCCCceEEEE
Confidence 7889999999 999999999999999987655 7999887742 2223344445555666665333333
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
. ..+|. ++.+.+.|+.+.+|...|++.++.|||
T Consensus 74 ~-~~~~~--~~~~~~~P~~~~~g~~~G~v~~~~DIT 106 (106)
T PF13596_consen 74 I-PNGGR--WYLVRYRPYRDEDGEYAGAVITFQDIT 106 (106)
T ss_dssp E-EETTE--EEEEEEEEEE-TTS-EEEEEEEEEE-G
T ss_pred e-cCCCE--EEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 3 24554 668899999999999999999999997
|
|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=86.85 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=81.5
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. .+++++++|. +|+|+++|+++++++|++.++++|++..++... .......+...+..
T Consensus 9 ~~~il~~--~~~gi~~~d~---~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~ 72 (348)
T PRK11073 9 AGQILNS--LINSILLLDD---DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSY-----------FSLNIELMRESLQA 72 (348)
T ss_pred HHHHHhc--CcCeEEEECC---CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCc-----------chhhHHHHHHHHHc
Confidence 3455555 8999999999 999999999999999999999999998877531 11122334445555
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+..+..+.....++|+.+|+.++..|+. . .+++...+|+|+++++++
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~---~~~~~~~~dit~~~~~~~ 119 (348)
T PRK11073 73 GQGFTDNEVTLVIDGRSHILSLTAQRLP--E---GMILLEMAPMDNQRRLSQ 119 (348)
T ss_pred CCcccccceEEEECCceEEEEEEEEEcc--C---ceeEEEEechhHHHHHHH
Confidence 5554444445567999999999999986 2 235667899998876644
|
|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-05 Score=62.41 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCCEEEEehH-HHHHhCCCchhhcCCCCcccccCCcccccCCCCCChH-HHHHHHHHHHhCcceEEEEEEEeecCcceeE
Q 048754 66 DFPIIYVNKV-FEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV-VVSEIRRCLEEGIEFQGELLNFKKDGTPLVN 143 (625)
Q Consensus 66 ~g~i~~~N~~-~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~ 143 (625)
+|.|+++... ...++||.++|++|++..++. ||++... ........+..|.....-+|++.++|...|+
T Consensus 11 dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~---------H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwv 81 (111)
T PF14598_consen 11 DGKITYVDSRAVSSLLGYLPEELVGRSIYDFV---------HPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWV 81 (111)
T ss_dssp TSBEEEEETTHHHHHHSS-HHHHTTSBGGGGB---------SCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEE
T ss_pred CcEEEEEcCccChhhcCCCcHHHcCCchHHhC---------CHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEE
Confidence 9999999999 699999999999999999885 5666665 5556777778888877789999999999999
Q ss_pred EEEEEEeeC-CCCCEEEEEEEEEeeecc
Q 048754 144 RLRLAPIRD-DDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 144 ~~~~~~~~d-~~g~~~~~i~~~~Dit~~ 170 (625)
......+.+ ..+++..++++-+-+++.
T Consensus 82 qt~~~~~~n~~~~~~~~Iv~~n~vlse~ 109 (111)
T PF14598_consen 82 QTKATLFYNPWTSKPEFIVCTNTVLSEE 109 (111)
T ss_dssp EEEEEEEEETTTTCEEEEEEEEEEESCE
T ss_pred EEEEEEEECCCCCCccEEEEEEEEeccC
Confidence 999888875 345666777766666654
|
... |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.9e-06 Score=56.78 Aligned_cols=46 Identities=35% Similarity=0.655 Sum_probs=38.3
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+|||+||... ...++++++||+.+++ |+.+++ +|.+|..|++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~--W~~~~~--~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNK--WTPLPS--MPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCe--EccCCC--CCCccccceEEEeC
Confidence 4899999864 4568899999987766 999886 88999999988775
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00012 Score=68.05 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=94.2
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC--CCCceEEcCCCCCCCC
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT--DKPMWREIPTSWSPPS 462 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~p~~ 462 (625)
....||+.|+ +++.+... .--+..+.+.+.++++++.||...+. ..+..|++.+ .+..|.+.... +..+
T Consensus 47 ~s~~yD~~tn--~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~~~~-m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTN--TFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTESPND-MQSG 117 (243)
T ss_pred EEEEEecCCC--cEEeccCC---CCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceECccc-ccCC
Confidence 3557999999 88887642 22232333445567899999976533 4567788743 23459887643 7889
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC---CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD---EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
|+..+++.+.+++++|+||.... ....+.... ....|..+.... .....-.+..+....+
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~--------t~E~~P~~~~~~~~~~~~~l~~~~---------~~~~~nlYP~~~llPd 180 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP--------TYEFWPPKGPGPGPVTLPFLSQTS---------DTLPNNLYPFVHLLPD 180 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC--------cccccCCccCCCCceeeecchhhh---------ccCccccCceEEEcCC
Confidence 99999999999999999998621 111222110 011222222110 0011224456667779
Q ss_pred CEEEEEecCCCCCCCCCcEEEEeCCCCCCCe-EEEc
Q 048754 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW-RILN 574 (625)
Q Consensus 540 ~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W-~~v~ 574 (625)
++|++++.. +-++||. .++++ ..++
T Consensus 181 G~lFi~an~--------~s~i~d~--~~n~v~~~lP 206 (243)
T PF07250_consen 181 GNLFIFANR--------GSIIYDY--KTNTVVRTLP 206 (243)
T ss_pred CCEEEEEcC--------CcEEEeC--CCCeEEeeCC
Confidence 999999763 4567888 56665 4443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0029 Score=65.31 Aligned_cols=180 Identities=12% Similarity=0.132 Sum_probs=102.4
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC------CCCccceeEE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS------PPGRWGHTLS 364 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~------p~~r~~~~~~ 364 (625)
..|+... ....+......+.++.++.||+.+.. ..++++|..+-+..|+.-..... +.++...+ .
T Consensus 46 ~~W~~~~-g~g~~~~~~~~sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~ 116 (394)
T PRK11138 46 TVWSTSV-GDGVGDYYSRLHPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-V 116 (394)
T ss_pred eeeEEEc-CCCCccceeeeccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccc-c
Confidence 4677543 22222212223556789999998753 24899998876678985321100 01122222 3
Q ss_pred EEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 365 SLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 365 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
++.++++|+.+. ...++.+|..|++..|+.-... + . .+...+.++.+|+..+ ...++.||+
T Consensus 117 ~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~--~---~-~ssP~v~~~~v~v~~~-------~g~l~ald~ 177 (394)
T PRK11138 117 TVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG--E---A-LSRPVVSDGLVLVHTS-------NGMLQALNE 177 (394)
T ss_pred EEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC--c---e-ecCCEEECCEEEEECC-------CCEEEEEEc
Confidence 344677887543 1369999999998899854322 1 1 1222333667777433 136899999
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
++.+..|+.-........+...+.++.++ .+|+..+ ...++.+|+++....|+.
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~-~v~~~~~----------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATAFG-GAIVGGD----------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEECC-EEEEEcC----------CCEEEEEEccCChhhhee
Confidence 99998998754211111122233344444 6666433 256788898876678874
|
|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-06 Score=84.23 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=76.0
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. .+++++++|. +|+++++|+++++++|+++++++|++...+.. .+. +.+.+..+
T Consensus 9 ~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~------------~~~----~~~~l~~~ 67 (333)
T TIGR02966 9 RAAAQA--LPDAVVVLDE---EGQIEWCNPAAERLLGLRWPDDLGQRITNLIR------------HPE----FVEYLAAG 67 (333)
T ss_pred HHHHHh--CcCcEEEECC---CCcEEEEcHHHHHHhCCChHHHcCCcHHHHcc------------CHH----HHHHHHhc
Confidence 344445 9999999999 99999999999999999999999988776642 122 22223222
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.. ........++|...|+.+...|+.+.+ ++++.+|||+++++++
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~dit~~~~~~~ 112 (333)
T TIGR02966 68 RF-SEPLELPSPINSERVLEIRIAPYGEEQ-----KLLVARDVTRLRRLEQ 112 (333)
T ss_pred cc-CCCeEeecCCCCceEEEEEEEEcCCCc-----eEEEEeCchHHHHHHH
Confidence 22 223444557888889999999987543 6788899998876544
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). |
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=86.03 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce-EE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF-QG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 129 (625)
+..+++++++|. +|+++++|+++++++|+++++++|++...++.+ .......+.+.+..+... ..
T Consensus 269 ~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 334 (607)
T PRK11360 269 ESIADGVIAIDR---QGKITTMNPAAEVITGLQRHELVGKPYSELFPP-----------NTPFASPLLDTLEHGTEHVDL 334 (607)
T ss_pred HhccCeEEEEcC---CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCC-----------chhHHHHHHHHHhcCCCccce
Confidence 348899999999 999999999999999999999999988777531 122233444445444333 33
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+....+++|... +.+...|+.+.+|.+.+++++.+|||+++++++
T Consensus 335 ~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~~i~~~~Dite~~~~e~ 379 (607)
T PRK11360 335 EISFPGRDRTIE-LSVSTSLLHNTHGEMIGALVIFSDLTERKRLQR 379 (607)
T ss_pred EEEEEcCCCcEE-EEEEEeeEEcCCCCEEEEEEEEeechHHHHHHH
Confidence 556667777766 889999999999999999999999999988765
|
|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=79.21 Aligned_cols=100 Identities=29% Similarity=0.418 Sum_probs=84.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
+--|+|+|+.|+++.||.+.|++.++..--++- -+..+....+.+++.++..+.-+.|..++.|+.++.|+.+
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMy-------GEltdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~v 111 (971)
T KOG0501|consen 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMY-------GELTDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLV 111 (971)
T ss_pred ccceEEecCcchhccCccHHHHhcccceeeeee-------ccccchhhHHHHHHHHHhhhhcceeeEeeecCCCceEEEE
Confidence 446899999999999999999999886433321 1234556778888888888888889999999999999999
Q ss_pred EEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 146 RLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
.+.|++++...++.++++++|||..|+
T Consensus 112 qiAPIrNe~d~VVLfLctFkDIT~~KQ 138 (971)
T KOG0501|consen 112 QIAPIRNEKDKVVLFLCTFKDITALKQ 138 (971)
T ss_pred EeecccCCCceEEEEEeecccchhhcC
Confidence 999999999999999999999998876
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0062 Score=62.85 Aligned_cols=202 Identities=14% Similarity=0.199 Sum_probs=117.5
Q ss_pred cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccE
Q 048754 307 CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 307 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 386 (625)
...+.++.++.||+.+.. ..++++|..+-+..|+.-. .. + . .+..++.++.+|+..+. +.+
T Consensus 112 ~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-~~---~-~-~ssP~v~~~~v~v~~~~------g~l 172 (394)
T PRK11138 112 LSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV-AG---E-A-LSRPVVSDGLVLVHTSN------GML 172 (394)
T ss_pred cccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC-CC---c-e-ecCCEEECCEEEEECCC------CEE
Confidence 334456778899875431 2389999987778898531 11 1 1 22223446677775442 359
Q ss_pred EEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC----
Q 048754 387 FVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS---- 462 (625)
Q Consensus 387 ~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~---- 462 (625)
+.+|..+++..|+.-...+....+...+-+.. ++.+|+..+ . ..++.+|+.+....|+.-.. .|..
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~---~----g~v~a~d~~~G~~~W~~~~~--~~~~~~~~ 242 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGD---N----GRVSAVLMEQGQLIWQQRIS--QPTGATEI 242 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcC---C----CEEEEEEccCChhhheeccc--cCCCccch
Confidence 99999999888986543211111222233333 556666432 1 35788899888888975321 1110
Q ss_pred -C---CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec
Q 048754 463 -R---LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP 538 (625)
Q Consensus 463 -r---~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 538 (625)
+ ...+.++.++ .+|+.+. ...++.+|+.+....|+.-.. .+ ...+..
T Consensus 243 ~~~~~~~~sP~v~~~-~vy~~~~----------~g~l~ald~~tG~~~W~~~~~--------------~~---~~~~~~- 293 (394)
T PRK11138 243 DRLVDVDTTPVVVGG-VVYALAY----------NGNLVALDLRSGQIVWKREYG--------------SV---NDFAVD- 293 (394)
T ss_pred hcccccCCCcEEECC-EEEEEEc----------CCeEEEEECCCCCEEEeecCC--------------Cc---cCcEEE-
Confidence 1 1123444444 8887642 257889999876667875311 11 112333
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+++||+... ...++.+|+++.+..|+.-
T Consensus 294 ~~~vy~~~~-------~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 294 GGRIYLVDQ-------NDRVYALDTRGGVELWSQS 321 (394)
T ss_pred CCEEEEEcC-------CCeEEEEECCCCcEEEccc
Confidence 788888743 3579999996556678653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.014 Score=59.88 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
.+.++.++.+|+.+.. ..++++|..+-+..|+.-. .. +.. +..++.++.+|+.+. + ..++.
T Consensus 59 ~~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~-~~----~~~-~~p~v~~~~v~v~~~-~-----g~l~a 119 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVDL-DE----RLS-GGVGADGGLVFVGTE-K-----GEVIA 119 (377)
T ss_pred cceEEECCEEEEECCC-------CeEEEEEccCCcEeeeecC-CC----Ccc-cceEEcCCEEEEEcC-C-----CEEEE
Confidence 4556778888887643 2389999877667897431 11 111 123344667776543 1 36999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
+|..+++..|+.-... . ...+. .+.++.+|+..+ ...++.+|+++....|+.-........+...+.
T Consensus 120 ld~~tG~~~W~~~~~~----~-~~~~p-~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 120 LDAEDGKELWRAKLSS----E-VLSPP-LVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred EECCCCcEeeeeccCc----e-eecCC-EEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 9999998889855332 1 11222 334567777433 136899999888888986442111111222334
Q ss_pred EEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 469 SVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 469 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
++.++ .+| +|.. ...++.+|+.+....|+.
T Consensus 187 ~~~~~-~v~-~~~~---------~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 187 VIADG-GVL-VGFA---------GGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEECC-EEE-EECC---------CCEEEEEEccCCCEeeee
Confidence 44443 554 3332 257888998876667864
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00034 Score=65.11 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=86.3
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCCceeEeeeccc
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEPQWKQLECNAF 515 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~ 515 (625)
.-.+||+.+++ ++.+.. ...-+..+.+...++++++.||... + ...+..|++.. .+..|.+....
T Consensus 47 ~s~~yD~~tn~--~rpl~v---~td~FCSgg~~L~dG~ll~tGG~~~-G-----~~~ir~~~p~~~~~~~~w~e~~~~-- 113 (243)
T PF07250_consen 47 HSVEYDPNTNT--FRPLTV---QTDTFCSGGAFLPDGRLLQTGGDND-G-----NKAIRIFTPCTSDGTCDWTESPND-- 113 (243)
T ss_pred EEEEEecCCCc--EEeccC---CCCCcccCcCCCCCCCEEEeCCCCc-c-----ccceEEEecCCCCCCCCceECccc--
Confidence 34668988876 887764 2333333444566779999999865 2 25666777652 23478877542
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC-C---CCCCeEEEcCCCCCCCCCCcceEEEE
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS-E---EKPSWRILNVPGQPPKFAWGHSTCVV 591 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~-~---~~~~W~~v~~~~~~p~~r~~~~~~~~ 591 (625)
+..+|.+.++..+.+++++|+||... ..+.|-+. . ....|..+.........-.+.-+.++
T Consensus 114 ---------m~~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll 178 (243)
T PF07250_consen 114 ---------MQSGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL 178 (243)
T ss_pred ---------ccCCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCceEEEc
Confidence 47899999999999999999999862 22233331 0 11122222211111123345667788
Q ss_pred CCcEEEEEcCcCC
Q 048754 592 GGTRVLVLGGHTG 604 (625)
Q Consensus 592 ~~~~i~i~GG~~~ 604 (625)
.+++|++++...+
T Consensus 179 PdG~lFi~an~~s 191 (243)
T PF07250_consen 179 PDGNLFIFANRGS 191 (243)
T ss_pred CCCCEEEEEcCCc
Confidence 8899999998543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.3e-06 Score=78.28 Aligned_cols=103 Identities=24% Similarity=0.430 Sum_probs=87.6
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.+...++|-++|. +-.|.|+|++|++|+|+-+.|++|+...++...+ .........+..+++.|..+++
T Consensus 163 LD~c~eAiEI~~d---dhViQYVNpAfE~mmG~hkgEliGke~adlpkkd--------knradlldtintcikkgke~qG 231 (775)
T KOG1229|consen 163 LDECDEAIEICDD---DHVIQYVNPAFENMMGCHKGELIGKEEADLPKKD--------KNRADLLDTINTCIKKGKEAQG 231 (775)
T ss_pred Hhhhhhhheeccc---hhHHHHhcHHHHhhhcchhhhhcCCchhhccccc--------cchhhhhhhhhHhhhcCccccc
Confidence 5557788888988 8899999999999999999999999988886533 2345567788889999999999
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEE
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~ 163 (625)
+...++|.|..+.-.+.++|+....|.+..++.+
T Consensus 232 ~~~aRRksgdS~dqh~~itP~~gqggkirhfvsl 265 (775)
T KOG1229|consen 232 EEEARRKSGDSCDQHFIITPFAGQGGKIRHFVSL 265 (775)
T ss_pred hHHHhhccCCcccceEEEeeecCCCCceeeehhh
Confidence 9888999998888888899999888998888753
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.017 Score=54.49 Aligned_cols=198 Identities=14% Similarity=0.174 Sum_probs=105.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCC-ccce-eEEEE---cCC-EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPG-RWGH-TLSSL---NGS-WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP 406 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~-r~~~-~~~~~---~~~-~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~ 406 (625)
.++++|+.+ .+|..++.+..+.. ...+ .+..+ .+. ||+.+...........+.+|+..++ +|+.+....
T Consensus 15 ~~~V~NP~T--~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~--~Wr~~~~~~- 89 (230)
T TIGR01640 15 RLVVWNPST--GQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSN--SWRTIECSP- 89 (230)
T ss_pred cEEEECCCC--CCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCC--CccccccCC-
Confidence 489999988 79998843222111 1111 11111 122 4555544321223357899999999 999887432
Q ss_pred CCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCC----CcceEEEECCcEEEEEcC
Q 048754 407 PLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSR----LGHSLSVYGRTKVLMFGG 481 (625)
Q Consensus 407 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r----~~~~~~~~~~~~l~v~GG 481 (625)
+.......++.+ ++.+|-+.-..... ....+..||+.+++ |.. ++. |... .....+.+++ +|.++..
T Consensus 90 ~~~~~~~~~v~~-~G~lyw~~~~~~~~-~~~~IvsFDl~~E~--f~~~i~~---P~~~~~~~~~~~L~~~~G-~L~~v~~ 161 (230)
T TIGR01640 90 PHHPLKSRGVCI-NGVLYYLAYTLKTN-PDYFIVSFDVSSER--FKEFIPL---PCGNSDSVDYLSLINYKG-KLAVLKQ 161 (230)
T ss_pred CCccccCCeEEE-CCEEEEEEEECCCC-CcEEEEEEEcccce--Eeeeeec---CccccccccceEEEEECC-EEEEEEe
Confidence 222222225566 44677765322211 11268999998877 884 553 3222 1234555654 8877654
Q ss_pred CcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc---ceEEEEecCCEEEEEecCCCCCCCCC-c
Q 048754 482 LAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL---DHVAVSMPCGRIIIFGGSIAGLHSPS-Q 557 (625)
Q Consensus 482 ~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~---~~~~~~~~~~~l~v~GG~~~~~~~~~-~ 557 (625)
..... .-++|+++-. +...|+++-..+. .+.+.. ........+++|++..+. ... -
T Consensus 162 ~~~~~-----~~~IWvl~d~-~~~~W~k~~~i~~---------~~~~~~~~~~~~~~~~~~g~I~~~~~~-----~~~~~ 221 (230)
T TIGR01640 162 KKDTN-----NFDLWVLNDA-GKQEWSKLFTVPI---------PPLPDLVDDNFLSGFTDKGEIVLCCED-----ENPFY 221 (230)
T ss_pred cCCCC-----cEEEEEECCC-CCCceeEEEEEcC---------cchhhhhhheeEeEEeeCCEEEEEeCC-----CCceE
Confidence 32211 1478888522 2456998766521 111111 123444547888887652 122 3
Q ss_pred EEEEeC
Q 048754 558 LFLLDP 563 (625)
Q Consensus 558 v~~~d~ 563 (625)
+..||+
T Consensus 222 ~~~y~~ 227 (230)
T TIGR01640 222 IFYYNV 227 (230)
T ss_pred EEEEec
Confidence 888988
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.5e-05 Score=72.08 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=85.9
Q ss_pred eeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH
Q 048754 40 ELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR 119 (625)
Q Consensus 40 ~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 119 (625)
|.+....++.. ..+|++.+|. .|.|+-+|..+.+++|.+.++++|++..++..-. .. -.+.+
T Consensus 109 Er~kL~Svlay--MtDGViATdR---rG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~----------d~---y~~~d 170 (459)
T COG5002 109 ERRKLDSVLAY--MTDGVIATDR---RGKIILINKPALKMLGVSKEDALGRSILELLKIE----------DT---YTFED 170 (459)
T ss_pred HHHHHHHHHHH--HcCceEeecC---CCcEEEeccHHHHHhCcCHHHHhcccHHHHhCCc----------cc---eeHHH
Confidence 33444556666 8899999999 9999999999999999999999999877664311 11 12344
Q ss_pred HHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 120 CLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 120 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.++...++..+.. .+++...+.+....++-+.|-+-|++.+..|+|++.+.|+
T Consensus 171 L~e~~~s~lld~~---~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ 223 (459)
T COG5002 171 LVEKNDSLLLDSS---DEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVER 223 (459)
T ss_pred HHhcCCcEEEeec---CCCccEEEEEEEEEEeecccccceeEEEEecccHHHHHHH
Confidence 4555544444332 2677777888888888899999999999999999975543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.05 Score=51.58 Aligned_cols=198 Identities=21% Similarity=0.315 Sum_probs=115.5
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++.+|+..+ ...++++|..+-+..|+.-. +. +..... .+.++.+|+..+. +.++.+|
T Consensus 32 ~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~----~~-~~~~~~-~~~~~~v~v~~~~------~~l~~~d 92 (238)
T PF13360_consen 32 AVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL----PG-PISGAP-VVDGGRVYVGTSD------GSLYALD 92 (238)
T ss_dssp EEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC----SS-CGGSGE-EEETTEEEEEETT------SEEEEEE
T ss_pred EEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec----cc-ccccee-eecccccccccce------eeeEecc
Confidence 3447899999843 23499999877656788542 11 111122 3446788887631 2699999
Q ss_pred CCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC-----
Q 048754 391 LDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL----- 464 (625)
Q Consensus 391 ~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~----- 464 (625)
..+++..|+ ..... ++..........+.++.+|+... ...++.+|+++....|+.-.. .+....
T Consensus 93 ~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~ 162 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSS-PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG--EPRGSSPISSF 162 (238)
T ss_dssp TTTSCEEEEEEE-SS-CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS--TT-SS--EEEE
T ss_pred cCCcceeeeeccccc-cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC--CCCCCcceeee
Confidence 999988999 45432 22222223334444666776543 247899999998888987442 221111
Q ss_pred --cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 465 --GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 465 --~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
..+..++.++.+|+..+. ..+..+|..+....|+.. .. .........++.|
T Consensus 163 ~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w~~~-~~----------------~~~~~~~~~~~~l 215 (238)
T PF13360_consen 163 SDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLWSKP-IS----------------GIYSLPSVDGGTL 215 (238)
T ss_dssp TTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEEEEC-SS-----------------ECECEECCCTEE
T ss_pred cccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEEEec-CC----------------CccCCceeeCCEE
Confidence 113334444488887553 235667888654357332 11 1112234447777
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeE
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWR 571 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~ 571 (625)
|+.. . ...++++|+.+.+..|+
T Consensus 216 ~~~~-~------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 216 YVTS-S------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEE-T------TTEEEEEETTTTEEEEE
T ss_pred EEEe-C------CCEEEEEECCCCCEEeE
Confidence 7765 2 46899999965666675
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.047 Score=56.02 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=110.3
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.++.++.+|+.+.. ..++++|..+-+..|+.-. .. . . .+...+.++++|+..+ ...++.+|
T Consensus 101 p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-~~---~-~-~~~p~v~~~~v~v~~~------~g~l~a~d 161 (377)
T TIGR03300 101 VGADGGLVFVGTEK-------GEVIALDAEDGKELWRAKL-SS---E-V-LSPPLVANGLVVVRTN------DGRLTALD 161 (377)
T ss_pred eEEcCCEEEEEcCC-------CEEEEEECCCCcEeeeecc-Cc---e-e-ecCCEEECCEEEEECC------CCeEEEEE
Confidence 44557777765432 2389999877667897531 11 1 1 1222334667777543 13589999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC-----C--
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS-----R-- 463 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-----r-- 463 (625)
+.+++..|+.-........+...+.+.. ++.+|+ |.. + ..++.+|+.+.+..|+.-.. .+.. +
T Consensus 162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~-~~~--~----g~v~ald~~tG~~~W~~~~~--~~~g~~~~~~~~ 231 (377)
T TIGR03300 162 AATGERLWTYSRVTPALTLRGSASPVIA-DGGVLV-GFA--G----GKLVALDLQTGQPLWEQRVA--LPKGRTELERLV 231 (377)
T ss_pred cCCCceeeEEccCCCceeecCCCCCEEE-CCEEEE-ECC--C----CEEEEEEccCCCEeeeeccc--cCCCCCchhhhh
Confidence 9998888985443211111222233344 445544 431 1 26888999888888975321 1111 1
Q ss_pred -CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 -LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 -~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...+.++. ++.+|+... ...++.||+++....|..-. +. ..+.+ +.+++|
T Consensus 232 ~~~~~p~~~-~~~vy~~~~----------~g~l~a~d~~tG~~~W~~~~--------------~~---~~~p~-~~~~~v 282 (377)
T TIGR03300 232 DVDGDPVVD-GGQVYAVSY----------QGRVAALDLRSGRVLWKRDA--------------SS---YQGPA-VDDNRL 282 (377)
T ss_pred ccCCccEEE-CCEEEEEEc----------CCEEEEEECCCCcEEEeecc--------------CC---ccCce-EeCCEE
Confidence 11223333 447777532 25788999987666786531 00 11122 337888
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
|+... ...++++|.++.+..|+.-
T Consensus 283 yv~~~-------~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 283 YVTDA-------DGVVVALDRRSGSELWKND 306 (377)
T ss_pred EEECC-------CCeEEEEECCCCcEEEccc
Confidence 87632 3579999986556678753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Probab=97.29 E-value=2.4e-05 Score=83.61 Aligned_cols=133 Identities=9% Similarity=-0.049 Sum_probs=79.1
Q ss_pred EEecCCCCccccceeeeccccc--ccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCccccc
Q 048754 27 SFEGGGGGGGDDTELSLKPGLL--FYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQR 104 (625)
Q Consensus 27 ~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~ 104 (625)
...+.+++++.+++++..+..+ .+++++++++++|. +|+++++|+++++++|+...+..+.....+..
T Consensus 111 ~~~DIt~~k~~e~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~~~~~~~~~~------- 180 (494)
T TIGR02938 111 MHRDITELHRLEQVVANQKLLIESVVDAAPVAFVLLDP---TGRVILDNQEYKKLATDLRVKEPAHTVLDLLR------- 180 (494)
T ss_pred ehhhhhHHHHHHHHHHHHHHHHHHHHhcccceEEEEcC---CCCEEEechhHHHhhchhhhhHHHHHHHHHhh-------
Confidence 3456666666665554332222 24448999999999 99999999999999999877765543322211
Q ss_pred CCCCCChHHHHHHHHHHHhCcceE-EEEEEEeecCc-ceeEEEEEEEeeCCCCCE---------EEEEEEEEeeeccccc
Q 048754 105 RHPLVDPVVVSEIRRCLEEGIEFQ-GELLNFKKDGT-PLVNRLRLAPIRDDDGTV---------THIIGIQIFSEAKIDL 173 (625)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~dG~-~~~~~~~~~~~~d~~g~~---------~~~i~~~~Dit~~~~~ 173 (625)
|. ....+.........+. .+......+|. .+|+.....++.+..+.+ .+++++.+|||++|+.
T Consensus 181 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DITe~k~~ 254 (494)
T TIGR02938 181 --EA----WREALAENWPQQLAFSNREARFDRGGGRPARWLSCTGSVIGMESDCADSFFCAAEQPYLLLTIADISNLREE 254 (494)
T ss_pred --HH----hhhhhhhcchhhhccccceeeeccCCCceeeEEEecCceEEeecchhhheeccCCCchheehHHHHHHHHHH
Confidence 11 1111111111111122 23333344444 678888877776655543 3456678899999876
Q ss_pred CC
Q 048754 174 NH 175 (625)
Q Consensus 174 e~ 175 (625)
|+
T Consensus 255 ee 256 (494)
T TIGR02938 255 QE 256 (494)
T ss_pred HH
Confidence 55
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00036 Score=74.11 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=69.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+++++. .+++|+++|. +|+|+++|+++++++|++.++++|++..++.... . +.+.++.+
T Consensus 83 ~aIL~s--m~eGVi~vD~---~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~------------~----l~~~le~~ 141 (520)
T PRK10820 83 SALLEA--LPEPVLSIDM---KGKVELANPASCQLFGQSEEKLRNHTAAQLINGF------------N----FLRWLESE 141 (520)
T ss_pred HHHHHh--CCCcEEEECC---CCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc------------h----HHHHHHcC
Confidence 344445 9999999999 9999999999999999999999999988775311 1 22334444
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEee--CCCCCE--EEEEEEEEeeecc
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIR--DDDGTV--THIIGIQIFSEAK 170 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~--d~~g~~--~~~i~~~~Dit~~ 170 (625)
...... .....+|..+. +.+.|+. +++|.. .|.+.+.+|+++.
T Consensus 142 ~~~~~~-~~v~~~g~~~~--v~~~PI~~~d~~g~~~~~GaVivlrd~~~l 188 (520)
T PRK10820 142 PQDSHN-EHVVINGQDFL--MEITPVYLQDENDQHVLVGAVVMLRSTARM 188 (520)
T ss_pred CCccce-EEEEECCEEEE--EEEEeeeecCCCCceeEEEEEEEeccHHHH
Confidence 331111 22334566554 5556765 666653 7888888888754
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.14 Score=48.33 Aligned_cols=203 Identities=11% Similarity=0.090 Sum_probs=103.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCC-Ccc-ceEEEEc---CC-EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLP-RSW-HSSCIIE---GS-KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~-r~~-~~~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
..++++||.|+ .|..++....+.. ... ..+..++ +. +++.+..... ......+.+|++.+++ |..+...
T Consensus 14 ~~~~V~NP~T~--~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~--Wr~~~~~ 88 (230)
T TIGR01640 14 KRLVVWNPSTG--QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNS--WRTIECS 88 (230)
T ss_pred CcEEEECCCCC--CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCC--ccccccC
Confidence 46899999999 8998875322111 111 1122221 11 3444433211 1123467889987765 9998742
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE-eeeccccCcCCCCCCCCCCc----cce
Q 048754 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ-LECNAFTGVGSQSAVVPPPR----LDH 532 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~~~~~~~~~~p~~r----~~~ 532 (625)
.+........+.+++ .||-+........ ...+..||+.+ .+|.. ++ . |..+ ...
T Consensus 89 -~~~~~~~~~~v~~~G-~lyw~~~~~~~~~----~~~IvsFDl~~--E~f~~~i~-~------------P~~~~~~~~~~ 147 (230)
T TIGR01640 89 -PPHHPLKSRGVCING-VLYYLAYTLKTNP----DYFIVSFDVSS--ERFKEFIP-L------------PCGNSDSVDYL 147 (230)
T ss_pred -CCCccccCCeEEECC-EEEEEEEECCCCC----cEEEEEEEccc--ceEeeeee-c------------Cccccccccce
Confidence 221112222445555 7777653321111 12688899994 47875 43 2 2221 122
Q ss_pred EEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC---cceEEEECCcEEEEEcCcCCCCCcc
Q 048754 533 VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW---GHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 533 ~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~---~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
..+.. +++|.++...... ..-+||+++-. ++..|++.-.-..++.... .....++.+++|++..+. .. .
T Consensus 148 ~L~~~-~G~L~~v~~~~~~--~~~~IWvl~d~-~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~---~ 219 (230)
T TIGR01640 148 SLINY-KGKLAVLKQKKDT--NNFDLWVLNDA-GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN---P 219 (230)
T ss_pred EEEEE-CCEEEEEEecCCC--CcEEEEEECCC-CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC---c
Confidence 33444 7888887654211 12588988732 4567998643222122211 123445566788886653 10 1
Q ss_pred CceEEEEccCC
Q 048754 610 NELHELCLASK 620 (625)
Q Consensus 610 ~d~~~~~~~~~ 620 (625)
.-+..|++.++
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 12667777653
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.21 Score=47.31 Aligned_cols=224 Identities=21% Similarity=0.282 Sum_probs=121.5
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCcccee-EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHT-LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.+.++|+.+-...|+.- ..+...+.. ..+..++++|+..+ ...++.+|..+++..|+.-... + -.
T Consensus 4 ~l~~~d~~tG~~~W~~~----~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~--~--~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD----LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG--P--IS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEE----CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS--C--GG
T ss_pred EEEEEECCCCCEEEEEE----CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc--c--cc
Confidence 37788886655678752 111122222 14435778888843 3479999999997789865422 1 11
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceE-EcCCCCCCCC-CCcceEEEECCcEEEEEcCCcCCCCcc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWR-EIPTSWSPPS-RLGHSLSVYGRTKVLMFGGLAKSGHLR 489 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~ 489 (625)
... ...++.+|+..+ . +.++.+|..+.+..|+ ..... .+.+ .......+. ++.+|+...
T Consensus 70 -~~~-~~~~~~v~v~~~---~----~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-------- 130 (238)
T PF13360_consen 70 -GAP-VVDGGRVYVGTS---D----GSLYALDAKTGKVLWSIYLTSS-PPAGVRSSSSPAVD-GDRLYVGTS-------- 130 (238)
T ss_dssp -SGE-EEETTEEEEEET---T----SEEEEEETTTSCEEEEEEE-SS-CTCSTB--SEEEEE-TTEEEEEET--------
T ss_pred -cee-eecccccccccc---e----eeeEecccCCcceeeeeccccc-cccccccccCceEe-cCEEEEEec--------
Confidence 112 444668888652 1 2789999999999999 44431 1112 222333333 436766643
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc--cceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCC
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR--LDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEK 567 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r--~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~ 567 (625)
...++.+|+.++...|..-...+ .+..+... ...+...+.++.+|+..+.. .+..+|+.+..
T Consensus 131 --~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~ 194 (238)
T PF13360_consen 131 --SGKLVALDPKTGKLLWKYPVGEP-------RGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGE 194 (238)
T ss_dssp --CSEEEEEETTTTEEEEEEESSTT--------SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTE
T ss_pred --cCcEEEEecCCCcEEEEeecCCC-------CCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCC
Confidence 26889999987666787654221 00000000 11234444467888875532 36777985333
Q ss_pred CCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 568 PSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 568 ~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
..|+.. ..+ ..+.....++.+|+.. . -+.++.+|+.+-
T Consensus 195 ~~w~~~-~~~-------~~~~~~~~~~~l~~~~-~------~~~l~~~d~~tG 232 (238)
T PF13360_consen 195 KLWSKP-ISG-------IYSLPSVDGGTLYVTS-S------DGRLYALDLKTG 232 (238)
T ss_dssp EEEEEC-SS--------ECECEECCCTEEEEEE-T------TTEEEEEETTTT
T ss_pred EEEEec-CCC-------ccCCceeeCCEEEEEe-C------CCEEEEEECCCC
Confidence 348443 211 1121334445666655 2 256777777653
|
... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.44 Score=47.68 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=116.5
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccceeEEEEcCC
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWGHTLSSLNGS 369 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~ 369 (625)
..|++.....+ .......+....++..|+.|.. -.+|.......+|+++..+ ..|. ..+....+.++
T Consensus 76 ~tW~~~~~~~~-~~~~~l~~v~~~~~~~~~~G~~---------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~ 143 (334)
T PRK13684 76 ETWEERSLDLP-EENFRLISISFKGDEGWIVGQP---------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPG 143 (334)
T ss_pred CCceECccCCc-ccccceeeeEEcCCcEEEeCCC---------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCC
Confidence 47988753211 1111122222335556665532 1133333334689988532 1222 22234444455
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEE-ecCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLL-DLTTDK 448 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~-d~~~~~ 448 (625)
.+++.|..+ .+++-+-.-. +|+.+.... .-..+......++.+++.|.. + .++.- | ...
T Consensus 144 ~~~~~g~~G------~i~~S~DgG~--tW~~~~~~~---~g~~~~i~~~~~g~~v~~g~~---G----~i~~s~~--~gg 203 (334)
T PRK13684 144 TAEMATNVG------AIYRTTDGGK--NWEALVEDA---AGVVRNLRRSPDGKYVAVSSR---G----NFYSTWE--PGQ 203 (334)
T ss_pred cceeeeccc------eEEEECCCCC--CceeCcCCC---cceEEEEEECCCCeEEEEeCC---c----eEEEEcC--CCC
Confidence 567666422 3444333333 899887532 223334444445444544431 1 22322 2 232
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~ 528 (625)
.+|+.+.. +..+.-++++...++.++++|... ..++...+...+|+.+... ....
T Consensus 204 ~tW~~~~~---~~~~~l~~i~~~~~g~~~~vg~~G-----------~~~~~s~d~G~sW~~~~~~-----------~~~~ 258 (334)
T PRK13684 204 TAWTPHQR---NSSRRLQSMGFQPDGNLWMLARGG-----------QIRFNDPDDLESWSKPIIP-----------EITN 258 (334)
T ss_pred CeEEEeeC---CCcccceeeeEcCCCCEEEEecCC-----------EEEEccCCCCCccccccCC-----------cccc
Confidence 34998863 334444555555666888886531 1223212224689976421 0111
Q ss_pred cc-ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 529 RL-DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 529 r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
.. .+++....++.++++|.. ..++. ... .-.+|+.+......| .....++..++++.++.|..
T Consensus 259 ~~~l~~v~~~~~~~~~~~G~~-------G~v~~-S~d-~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 259 GYGYLDLAYRTPGEIWAGGGN-------GTLLV-SKD-GGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred ccceeeEEEcCCCCEEEEcCC-------CeEEE-eCC-CCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCC
Confidence 11 223333436678888653 22332 221 467999875322233 23455666666788888763
|
|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0003 Score=73.64 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
++++++++++|. +|+|+++|+++++++||+.++++|++...+.. .+.... .+.. ......
T Consensus 105 ~~~~~~i~~~d~---~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~------------~~~~~~----~~~~-~~~~~~ 164 (430)
T PRK11006 105 ESLPDAVVLTTE---EGNIFWCNGLAQQLLGFRWPEDNGQNILNLLR------------YPEFTQ----YLKT-RDFSRP 164 (430)
T ss_pred HhCCCeEEEEcC---CCceeHHHHHHHHHhCCCChHhCCCcHHHHhc------------CHHHHH----HHHh-cccCCC
Confidence 449999999999 99999999999999999999999998766642 112211 1111 111122
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
......++. ++.+.+.|..+ + ..+.+.+|||+++++++
T Consensus 165 ~~~~~~~~~--~~~~~~~~~~~--~---~~~~~~~dit~~~~~e~ 202 (430)
T PRK11006 165 LTLVLNNGR--HLEIRVMPYTE--G---QLLMVARDVTQMHQLEG 202 (430)
T ss_pred eEEEcCCCC--EEEEEEEEcCC--C---cEEEEEehhhHHHHHHH
Confidence 223334454 45666666543 2 24667899998876543
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00063 Score=45.72 Aligned_cols=45 Identities=36% Similarity=0.700 Sum_probs=38.3
Q ss_pred ccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhh
Q 048754 213 LQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQ 258 (625)
Q Consensus 213 ~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (625)
..+|+|++ ..++..+++.|+..+..+||+|+.++.+..+|+..+.
T Consensus 2 ~~LP~Eil-~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 2 SSLPDEIL-LEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCS-HHHH-HHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred hHhHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 46899999 8999999999999999999999999998899987653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.73 Score=46.97 Aligned_cols=248 Identities=13% Similarity=0.155 Sum_probs=116.3
Q ss_pred cCeeEEeeecCCCCCCC--cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEE
Q 048754 290 AVCWRKFTVRGAVEPSR--CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSL 366 (625)
Q Consensus 290 ~~~W~~~~~~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~ 366 (625)
-..|.+..........+ ...++...++..|+.|-. -.+|.......+|+++..+. +|.. ......+
T Consensus 119 G~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~ 187 (398)
T PLN00033 119 GKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---------AILLHTSDGGETWERIPLSPKLPGE--PVLIKAT 187 (398)
T ss_pred CCCceECccCcccccccccceeeeEEECCEEEEEcCc---------eEEEEEcCCCCCceECccccCCCCC--ceEEEEE
Confidence 35788764222111111 234444567788888643 23444444457999875332 1222 2334445
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC--CCCCC--------------ccceEEEEcCCEEEEEcCcC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA--PPLPR--------------SWHSSCIIEGSKLVVSGGCT 430 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~--~p~~r--------------~~~~~~~~~~~~iyv~GG~~ 430 (625)
.++.++++|..+ .+++-+-.-. +|+.+.... .|..+ .........++.++++|-.
T Consensus 188 ~~~~~~ivg~~G------~v~~S~D~G~--tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~- 258 (398)
T PLN00033 188 GPKSAEMVTDEG------AIYVTSNAGR--NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR- 258 (398)
T ss_pred CCCceEEEeccc------eEEEECCCCC--CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC-
Confidence 455688887432 2444433333 798763211 01111 0111122233345554421
Q ss_pred CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCcee--
Q 048754 431 DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWK-- 508 (625)
Q Consensus 431 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~-- 508 (625)
..++.-. +.....|+.+.. +.++.-.++....++.+++.|.. ..++.-+-. ...|+
T Consensus 259 ------G~~~~s~-d~G~~~W~~~~~---~~~~~l~~v~~~~dg~l~l~g~~----------G~l~~S~d~--G~~~~~~ 316 (398)
T PLN00033 259 ------GNFYLTW-EPGQPYWQPHNR---ASARRIQNMGWRADGGLWLLTRG----------GGLYVSKGT--GLTEEDF 316 (398)
T ss_pred ------ccEEEec-CCCCcceEEecC---CCccceeeeeEcCCCCEEEEeCC----------ceEEEecCC--CCccccc
Confidence 1233222 122223888874 44444445555556688887643 223332222 33443
Q ss_pred EeeeccccCcCCCCCCCCCCccc-eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcce
Q 048754 509 QLECNAFTGVGSQSAVVPPPRLD-HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHS 587 (625)
Q Consensus 509 ~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~ 587 (625)
.+... ..+..+.. ..+....++.++++|.. .-+++-.. .-.+|+.+......+...+ .
T Consensus 317 ~f~~~----------~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~D--~G~tW~~~~~~~~~~~~ly--~ 375 (398)
T PLN00033 317 DFEEA----------DIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRSTD--GGKSWKRDKGADNIAANLY--S 375 (398)
T ss_pred ceeec----------ccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeCC--CCcceeEccccCCCCccee--E
Confidence 22222 01222222 23334446788888763 23333333 5779999864333333333 4
Q ss_pred EEEECCcEEEEEc
Q 048754 588 TCVVGGTRVLVLG 600 (625)
Q Consensus 588 ~~~~~~~~i~i~G 600 (625)
+....+++.++.|
T Consensus 376 v~f~~~~~g~~~G 388 (398)
T PLN00033 376 VKFFDDKKGFVLG 388 (398)
T ss_pred EEEcCCCceEEEe
Confidence 4445557888887
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.064 Score=51.51 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=77.1
Q ss_pred EEEEccCCCCC--ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 371 LVVFGGCGRQG--LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 371 iyv~GG~~~~~--~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
|||-|-+...+ ....+-.||+.+. +|..+... -..-. .+....+++++|+.|-.+.++.....+..||.++.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~g~~--i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNS--QWSSPGNG--ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCC--EeecCCCC--ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 35555565444 3567888999998 99998764 11211 233334677899888766555445678889987766
Q ss_pred CceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 449 PMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 449 ~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
|+.+... ..|.+....+....+...+++.|.. ..+ ..-+..|| ..+|..+..
T Consensus 76 --w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g-----~~~l~~~d----Gs~W~~i~~ 130 (281)
T PF12768_consen 76 --WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG-----STFLMKYD----GSSWSSIGS 130 (281)
T ss_pred --eeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC-----CceEEEEc----CCceEeccc
Confidence 9888752 2344432222222234467877766 322 25566775 458998876
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.16 Score=48.90 Aligned_cols=124 Identities=20% Similarity=0.296 Sum_probs=74.6
Q ss_pred EEEcccCCCCC-CCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCC-ccccEEEEECCCCCC
Q 048754 319 VLFGGEGVNMQ-PMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG-LLNDVFVLDLDAKQP 396 (625)
Q Consensus 319 yv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~t~~~ 396 (625)
||-|-+..... .+..+..||... .+|..+. ....... .++..++++++|+.|-+.-.+ ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~--~qW~~~g--~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDN--SQWSSPG--NGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCC--CEeecCC--CCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC--
Confidence 44444433322 466688999888 6999763 2211111 233334577899888765433 4556888999999
Q ss_pred EEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC
Q 048754 397 TWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 397 ~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
+|..+... ..|.+.........+...+++.|... .+ ...+..|| ..+ |..+..
T Consensus 75 ~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~-~g--~~~l~~~d--Gs~--W~~i~~ 130 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA-NG--STFLMKYD--GSS--WSSIGS 130 (281)
T ss_pred eeeecCCcccccCCCcEEEEEeeccCCceEEEeceec-CC--CceEEEEc--CCc--eEeccc
Confidence 99988763 23444432222233566788887762 22 23566676 444 999875
|
|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0074 Score=65.38 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=67.3
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCc---hhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRA---DEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~---~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (625)
..+++|+++|. +|+|+++|+++++++|++. ++.+|+....+.. ...+.+.+..+....
T Consensus 229 ~~~~gIi~~D~---~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 289 (542)
T PRK11086 229 SIKEGVIAVDD---RGEVTLINDEAKRLFNYKKGLEDDPLGTDVESWMP----------------VSRLKEVLRTGTPRR 289 (542)
T ss_pred HhcCcEEEECC---CCeEEEEhHHHHHHhCCCcCCcccccCCcHHHhCC----------------chhHHHHHhcCCCcc
Confidence 38899999999 9999999999999998753 3455554443321 112333444444333
Q ss_pred EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 129 ~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+. ...+|. .+.+...|+.+ +|.+.+++.+.+|+|+.+++++
T Consensus 290 ~~~--~~~~g~--~~~~~~~pi~~-~g~~~g~v~~~rDite~~~l~~ 331 (542)
T PRK11086 290 DEE--ININGR--LLLTNTVPVRV-NGEIIGAIATFRDKTEVRQLAQ 331 (542)
T ss_pred ceE--EEECCE--EEEEEEEEEeE-CCEEEEEEEEEEEchHHHHHHH
Confidence 221 122444 44566788887 7899999999999999876644
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=47.47 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=98.0
Q ss_pred cccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CC-CCc-cceeEEEEcCCEEEEEccCCCCCcc
Q 048754 307 CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SP-PGR-WGHTLSSLNGSWLVVFGGCGRQGLL 383 (625)
Q Consensus 307 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p-~~r-~~~~~~~~~~~~iyv~GG~~~~~~~ 383 (625)
...+.++.++.+|+.... ..++.+|..+-...|+.-.... .+ .+. .....+...+++||+... .
T Consensus 53 ~~~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~ 119 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------D 119 (488)
T ss_pred cccCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------C
Confidence 334556779999987653 2389999987667898532111 00 011 111122222267776543 2
Q ss_pred ccEEEEECCCCCCEEEEcCCCCC-CCCCccceEEEEcCCEEEEEcCcCCCC---ceeceEEEEecCCCCCceEEcCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKLVVSGGCTDAG---VLLSDTYLLDLTTDKPMWREIPTSWS 459 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~~~~~~W~~~~~~~~ 459 (625)
..++.+|..|++..|+.-..... +......+.++. ++.+|+ |...... .....++.||..+.+..|+.-.....
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 36899999999889986543211 111112223333 545554 4321110 12357899999999999975332111
Q ss_pred C--CC--------------CCcceEEEE-CCcEEEEEcCCcCCC--------CcccccCceEEEEcCCCCCceeEe
Q 048754 460 P--PS--------------RLGHSLSVY-GRTKVLMFGGLAKSG--------HLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 460 p--~~--------------r~~~~~~~~-~~~~l~v~GG~~~~~--------~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
+ .+ ....+.++. .++.+|+-.|..... ......+.++.+|.++.+..|+.-
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1 01 011122222 233566543321000 000113579999999888899864
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.044 Score=49.38 Aligned_cols=112 Identities=26% Similarity=0.304 Sum_probs=76.3
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH-HHhCcceE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-LEEGIEFQ 128 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (625)
++..+++++..|. ++.+.++|+++.+++|++..+..+.....+.... ............. ........
T Consensus 118 ~~~~~~~~~~~d~---~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 186 (232)
T COG2202 118 LEASPDGIWVLDE---DGRILYANPAAEELLGYSPEEELGRGLSDLIHPE--------DEERRELELARALAEGRGGPLE 186 (232)
T ss_pred HhhCCceEEEEeC---CCCEEEeCHHHHHHhCCChHHhcCCChhheEecC--------CCchhhHHHHHHhhccCCCCcc
Confidence 3448899999999 9999999999999999998887776655543211 0110011111121 22334466
Q ss_pred EEEEEEeecCcc-eeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 129 GELLNFKKDGTP-LVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 129 ~e~~~~~~dG~~-~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+.....++|.. .+......+... .|.+..+.....|++++++.
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 187 IEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQA 231 (232)
T ss_pred eEEEEEecCCCEEEEEEeeeeEecC-CCceEEEEEEEechHHHhhc
Confidence 677888899985 777777766654 68888888888899887643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.7 Score=43.85 Aligned_cols=256 Identities=14% Similarity=0.106 Sum_probs=118.3
Q ss_pred EEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCCCCE
Q 048754 320 LFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPT 397 (625)
Q Consensus 320 v~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~ 397 (625)
++|++.. .....+++|.++..+.++..+...... ...+..++ .++.||+..... .-...+..|.+...+.+
T Consensus 3 ~vgsy~~--~~~~gI~~~~~d~~~g~l~~~~~~~~~---~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 3 YVGSYTN--GKGGGIYVFRFDEETGTLTLVQTVAEG---ENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEECCS--SSSTEEEEEEEETTTTEEEEEEEEEES---SSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTE
T ss_pred EEEcCCC--CCCCcEEEEEEcCCCCCceEeeeecCC---CCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcce
Confidence 3455543 223458888886655788877531111 11122223 567888886543 11234555554443237
Q ss_pred EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc----------CCCCCCCCCCcce
Q 048754 398 WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI----------PTSWSPPSRLGHS 467 (625)
Q Consensus 398 W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~----------~~~~~p~~r~~~~ 467 (625)
.+.+...........|.++.-+++.+|+.-- . ...+.+|+++... .-... +.......-..|.
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany-~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANY-G-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEET-T-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEc-c-----CCeEEEEEccCCc-ccceeeeecccCCCCCccccccccccee
Confidence 7766532111111122222225556666421 1 1356667765431 11111 0000112233466
Q ss_pred EEEECC-cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc-ceEEEEecCCEEEEE
Q 048754 468 LSVYGR-TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL-DHVAVSMPCGRIIIF 545 (625)
Q Consensus 468 ~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~ 545 (625)
+....+ +.+|+..= + .+.+++|+++....+........ .|..-. .|.++.-.+..+||+
T Consensus 149 v~~~pdg~~v~v~dl----G-----~D~v~~~~~~~~~~~l~~~~~~~----------~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL----G-----ADRVYVYDIDDDTGKLTPVDSIK----------VPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp EEE-TTSSEEEEEET----T-----TTEEEEEEE-TTS-TEEEEEEEE----------CSTTSSEEEEEE-TTSSEEEEE
T ss_pred EEECCCCCEEEEEec----C-----CCEEEEEEEeCCCceEEEeeccc----------cccCCCCcEEEEcCCcCEEEEe
Confidence 655544 36666521 1 48899999885433355433331 122111 234444335689998
Q ss_pred ecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCC---CCCCcceEE-EECCc-EEEEEcCcCCCCCccCceEEEEccCC
Q 048754 546 GGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPP---KFAWGHSTC-VVGGT-RVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 546 GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p---~~r~~~~~~-~~~~~-~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
... .+.|.+|++...+..++.+......| ......+.+ +..++ .||+-- .. .+.|.+|+++..
T Consensus 210 ~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~-----~~sI~vf~~d~~ 277 (345)
T PF10282_consen 210 NEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RG-----SNSISVFDLDPA 277 (345)
T ss_dssp ETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CT-----TTEEEEEEECTT
T ss_pred cCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-cc-----CCEEEEEEEecC
Confidence 664 56777777732356666665322222 222223333 44444 455532 22 356777777443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.6 Score=42.59 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=104.5
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
..|.........+......+....++..|+.|-. -.++.......+|+++..+. +.|-..+....+.++.
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~---------g~ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~ 116 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP---------GLLLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGS 116 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET---------TEEEEESSTTSS-EE----T-T-SS-EEEEEEEETTE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC---------ceEEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCc
Confidence 5798876332222122223333457889988742 12444444457999985332 2233335556666778
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
++++|.. ..+|+=. ..-.+|+.+... .. -.-..+....++.+++++.. + +-....|+... .
T Consensus 117 ~~l~~~~------G~iy~T~--DgG~tW~~~~~~--~~-gs~~~~~r~~dG~~vavs~~---G---~~~~s~~~G~~--~ 177 (302)
T PF14870_consen 117 AELAGDR------GAIYRTT--DGGKTWQAVVSE--TS-GSINDITRSSDGRYVAVSSR---G---NFYSSWDPGQT--T 177 (302)
T ss_dssp EEEEETT--------EEEES--STTSSEEEEE-S-------EEEEEE-TTS-EEEEETT---S---SEEEEE-TT-S--S
T ss_pred EEEEcCC------CcEEEeC--CCCCCeeEcccC--Cc-ceeEeEEECCCCcEEEEECc---c---cEEEEecCCCc--c
Confidence 8888753 2344332 222389987643 21 12222334455566655532 1 12233464333 3
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL 530 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~ 530 (625)
|+... .+..|.-.++....++.|++.. .. ..+..-+......+|.+.... ......
T Consensus 178 w~~~~---r~~~~riq~~gf~~~~~lw~~~-~G---------g~~~~s~~~~~~~~w~~~~~~-----------~~~~~~ 233 (302)
T PF14870_consen 178 WQPHN---RNSSRRIQSMGFSPDGNLWMLA-RG---------GQIQFSDDPDDGETWSEPIIP-----------IKTNGY 233 (302)
T ss_dssp -EEEE-----SSS-EEEEEE-TTS-EEEEE-TT---------TEEEEEE-TTEEEEE---B-T-----------TSS--S
T ss_pred ceEEc---cCccceehhceecCCCCEEEEe-CC---------cEEEEccCCCCccccccccCC-----------cccCce
Confidence 98876 3455666677677777888864 11 233333311113467763221 112223
Q ss_pred ceEE-EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 531 DHVA-VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 531 ~~~~-~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
+... ....++.+++.||.. .++ +..+ .-.+|++.......|.. .......++++-+|+|-
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G-------~l~-~S~D-gGktW~~~~~~~~~~~n--~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSG-------TLL-VSTD-GGKTWQKDRVGENVPSN--LYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT--------EE-EESS-TTSS-EE-GGGTTSSS-----EEEEEETTEEEEE-S
T ss_pred eeEEEEecCCCCEEEEeCCc-------cEE-EeCC-CCccceECccccCCCCc--eEEEEEcCCCceEEECC
Confidence 3333 333367899998852 333 3332 57899999753334433 23444555568888884
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0021 Score=65.50 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=99.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
..+++++++. ...+..+|..+..+.+-....++|.+..++.... ... . ..++........
T Consensus 10 ~~~~~~vi~~---~~~~~~~~~~a~~~~~~~~~~~i~~~~~~i~~~~----------~~~------~-v~~~~~~~~~~~ 69 (560)
T COG3829 10 ILDGPVVIDK---NTGIDVANALALAKRQKNAEAVIGRPLREILETL----------GME------R-VEQSRDKELTER 69 (560)
T ss_pred cccceEEEEc---CCceeeechHHHHhhhcceEEEecccceeecccc----------Ccc------e-eeccCccceeee
Confidence 7788888888 8899999999999999999999998777664311 000 0 112222222222
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccc---cccccccCCCCCCcccccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYD---QSAQYFSGGHSPLSQHQDI 209 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~n~~~ 209 (625)
...+ + ....+...++.++.+++++++.+..|+++..+.-+..+...++.+...++ ....++|..+.+++.|.+.
T Consensus 70 ~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~ 146 (560)
T COG3829 70 LKLK-V--KRIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAY 146 (560)
T ss_pred eecc-c--eeEEEcCCceeecCCceeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEcCCCcEEEEcHHH
Confidence 2222 2 22233334445678899999999999998655433222233344444443 3333457777778999999
Q ss_pred cccccCc-hhHHHHhhhccc
Q 048754 210 CGILQLS-DEVLAHNILSRL 228 (625)
Q Consensus 210 ~~~~g~~-~e~~~~~~~~~~ 228 (625)
..++|++ ++++|.++.+++
T Consensus 147 ~~~~gl~~e~~~gk~~~~v~ 166 (560)
T COG3829 147 AKLLGLSPEEVLGKHLLDVV 166 (560)
T ss_pred HHHhCCCHHHHcCCcHHHHH
Confidence 9999999 888987776665
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.019 Score=63.28 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+...++|+++|. +|+|+++|+++++++|++.++++|++..+++. .. ..+.+.+..+......
T Consensus 210 ~~~~~gVl~vD~---~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~------------~~---~~l~~vl~~~~~~~~~ 271 (638)
T PRK11388 210 ESMDDGVIAWDE---QGNLQFLNAQAARLLRLDATASQGRAITELLT------------LP---AVLQQAIKQAHPLKHV 271 (638)
T ss_pred hccCCcEEEECC---CCeEehhhHHHHHHhCcCHHHHCCCcHHHHhc------------cc---hHHHHHHhcCCceeeE
Confidence 347889999999 99999999999999999999999998877752 11 1233445555544332
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
......+|..+++.+.+.|+.+..|. +++.+.+++++
T Consensus 272 ~~~l~~~g~~~~~~v~~~Pi~~~~g~--~~v~~l~~~~~ 308 (638)
T PRK11388 272 EVTFESQGQFIDAVITLKPIIEGQGT--SFILLLHPVEQ 308 (638)
T ss_pred EEEEecCCceEEEEEEEEeecccCce--EEEEEehhhHH
Confidence 22233456666788888898654443 24444455544
|
|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=52.82 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=69.8
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE-EE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG-EL 131 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~ 131 (625)
....+++.|. ++.|.|+|++++.+|+.+..-+.+.....++.. .......+.+..+.+..+.. ++
T Consensus 16 ~~~pVl~vd~---~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~-----------gs~ll~ll~q~~~~~~~~~~~~v 81 (363)
T COG3852 16 LINPVLLVDD---ELAIHYANPAAEQLLAVSARRLAGTRLSELLPF-----------GSLLLSLLDQVLERGQPVTEYEV 81 (363)
T ss_pred cCCceEEEcC---CCcEEecCHHHHHHHHHHHHHHhcCChHHHcCC-----------CcHHHHHHHHHHHhcCCccccee
Confidence 7788999999 999999999999999999999999988877642 23445566666666666554 33
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCE
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTV 157 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~ 157 (625)
.+. .+|....+...+.|+....|.+
T Consensus 82 ~l~-~~g~~~~v~~~v~~v~~~~G~v 106 (363)
T COG3852 82 TLV-ILGRSHIVDLTVAPVPEEPGSV 106 (363)
T ss_pred eee-ecCccceEEEEEeeccCCCCeE
Confidence 333 6899989999999998766654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=2.2 Score=42.65 Aligned_cols=152 Identities=13% Similarity=-0.029 Sum_probs=70.4
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC-CC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD-AK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~-t~ 394 (625)
++|+..+.+ +.+.+|++.+. .+++.+..- +.....+.++.- +++.+|+.+. . .+.+..|++. ++
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~-g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHE-GALTLLQVV--DVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCC-CceeeeeEE--ecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCC
Confidence 567775542 34888888542 466655321 111111222222 3556777543 2 2457677775 33
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
++..+.....+ ....|.+..-+++.+|+..- . .+.+.+|+++++......+.. .+.....|++++..++
T Consensus 69 --~l~~~~~~~~~-~~p~~i~~~~~g~~l~v~~~-~-----~~~v~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 69 --ALTFAAESPLP-GSPTHISTDHQGRFLFSASY-N-----ANCVSVSPLDKDGIPVAPIQI--IEGLEGCHSANIDPDN 137 (330)
T ss_pred --ceEEeeeecCC-CCceEEEECCCCCEEEEEEc-C-----CCeEEEEEECCCCCCCCceee--ccCCCcccEeEeCCCC
Confidence 55544322111 11122222224556666532 1 246777887543211222211 1111223555454333
Q ss_pred -EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 475 -KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 475 -~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+|+..-. .+.+++||+++
T Consensus 138 ~~l~v~~~~---------~~~v~v~d~~~ 157 (330)
T PRK11028 138 RTLWVPCLK---------EDRIRLFTLSD 157 (330)
T ss_pred CEEEEeeCC---------CCEEEEEEECC
Confidence 56664321 37889999873
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0068 Score=61.94 Aligned_cols=105 Identities=23% Similarity=0.344 Sum_probs=74.6
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
++.+.++++++|. +|+++++|.++..++|++.++++|++..++... .......+.+.++.+...
T Consensus 123 l~~~~~~l~vvD~---~G~~i~~N~~~~~~~gl~~e~~~gk~~~~v~~~-------------~~~s~~l~vl~~~kp~~~ 186 (560)
T COG3829 123 LDSIDDGLLVVDE---DGIIIYYNKAYAKLLGLSPEEVLGKHLLDVVSA-------------GEDSTLLEVLRTGKPIRD 186 (560)
T ss_pred HhhccCceEEEcC---CCcEEEEcHHHHHHhCCCHHHHcCCcHHHHHhc-------------cCCceehhhhhcCCccee
Confidence 3448999999999 999999999999999999999999987777410 011234456667776655
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
....+. |... .....|+. .+|.+.+.+++.+|+++-+.+..
T Consensus 187 ~~~~~~--~~~~--i~~~~pv~-~~g~l~G~v~~~~~~~~l~~l~~ 227 (560)
T COG3829 187 VVQTYN--GNKI--IVNVAPVY-ADGQLIGVVGISKDVSELERLTR 227 (560)
T ss_pred eeeeec--CCce--eEeeccEe-cCCcEEEEEEeecchHHHHHHHH
Confidence 444332 2221 34555655 46699999999999998765543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.3 Score=46.64 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=36.0
Q ss_pred hhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhh
Q 048754 217 DEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQ 258 (625)
Q Consensus 217 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (625)
+++. ..++..+...++..+..+|++|+.++.++-+||++..
T Consensus 84 ~hi~-e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 84 DHIA-ENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHH-HHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 4444 8899999999999999999999999999999998644
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.5 Score=43.86 Aligned_cols=226 Identities=14% Similarity=0.131 Sum_probs=112.4
Q ss_pred EEEC-CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC-CCCccceeEEEEcCCEEEEEccCCCC----Ccccc
Q 048754 312 CAAG-NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS-PPGRWGHTLSSLNGSWLVVFGGCGRQ----GLLND 385 (625)
Q Consensus 312 ~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~ 385 (625)
++.+ +.||+.... ..++.+|..+-+..|+.-..... +......+.+ +.++.+| +|..+.. .....
T Consensus 106 ~~~~~~~V~v~~~~-------g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~-v~~~~v~-vg~~~~~~~~~~~~g~ 176 (488)
T cd00216 106 AYWDPRKVFFGTFD-------GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPT-IVKKLVI-IGSSGAEFFACGVRGA 176 (488)
T ss_pred EEccCCeEEEecCC-------CeEEEEECCCCCEeeeecCCCCcCcceEecCCCE-EECCEEE-EeccccccccCCCCcE
Confidence 4445 778875431 23899999876678985321110 0001122223 3355555 4432211 12457
Q ss_pred EEEEECCCCCCEEEEcCCCCCC-CCCc--------------cceEEEE--cCCEEEEEcCcCC-----------CCceec
Q 048754 386 VFVLDLDAKQPTWIEVSGGAPP-LPRS--------------WHSSCII--EGSKLVVSGGCTD-----------AGVLLS 437 (625)
Q Consensus 386 ~~~~d~~t~~~~W~~~~~~~~p-~~r~--------------~~~~~~~--~~~~iyv~GG~~~-----------~~~~~~ 437 (625)
++.+|..|++..|+.-.....+ ..+. -.+...+ .++.+|+-.|-.. .+...+
T Consensus 177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~ 256 (488)
T cd00216 177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD 256 (488)
T ss_pred EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence 8999999998899843321101 0000 0111233 2456666533210 112345
Q ss_pred eEEEEecCCCCCceEEcCCCC-CCCCCCcceEEE-----ECCc--EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 438 DTYLLDLTTDKPMWREIPTSW-SPPSRLGHSLSV-----YGRT--KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~-~p~~r~~~~~~~-----~~~~--~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
.++.+|+++.+..|+.-.... ....+.....++ +++. .++++|.. ...++.+|..+....|+.
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~---------~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK---------NGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC---------CceEEEEECCCCcEeeEe
Confidence 799999999999998643210 000011111111 1221 23444433 257899999987778985
Q ss_pred eeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC-----------CCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 510 LECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI-----------AGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 510 ~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-----------~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
-.... +. ....+.+|+-.... ........++.+|..+.+..|+.-.
T Consensus 328 ~~~~~-----------~~--------~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~ 384 (488)
T cd00216 328 PEVEQ-----------PM--------AYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE 384 (488)
T ss_pred Eeecc-----------cc--------ccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence 43210 00 01124455532111 0112245799999977788898754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.015 Score=60.33 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEE
Q 048754 65 PDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNR 144 (625)
Q Consensus 65 ~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 144 (625)
.+.+|+++.+.+..++||+++|++|+++.++. |+.+...+.....+.+.+|+..++-+|+..|+|...|+.
T Consensus 282 ~DmkityCedRisdlm~y~PeeLvGrS~Ye~~---------Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQ 352 (768)
T KOG3558|consen 282 LDMKITYCEDRISDLMDYEPEELVGRSCYEFV---------HALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQ 352 (768)
T ss_pred cceeEEEEchhHHHHhcCCHHHhhchhHHHhh---------hHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEE
Confidence 37899999999999999999999999999985 556666666677778889999999999999999999999
Q ss_pred EEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 145 LRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 145 ~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
..++.+... +++...+|++---+...
T Consensus 353 TqATVi~~tkn~q~q~IicVnYVlS~~ 379 (768)
T KOG3558|consen 353 TQATVIYNTKNPQEQNIICVNYVLSNI 379 (768)
T ss_pred eeeEEEecCCCCCcceEEEEEeeeccc
Confidence 988777543 23334455544344443
|
|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.012 Score=60.71 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=66.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
...|++..|. +|+|..+|++.++|+|.+.++++|.+...+.+ ...+.+...-..++.......
T Consensus 379 vtaGVi~~d~---~g~i~t~N~~ae~~l~~~~~~~~G~~lsa~ap--------------~~~~vf~~~~a~~~~~~~~ev 441 (712)
T COG5000 379 LTAGVIGFDN---RGCITTVNPSAEQILGKPFDQLLGQSLSAIAP--------------ELEEVFAEAGAAARTDKRVEV 441 (712)
T ss_pred CceeEEEEcC---CCeeEeecchHHHHhcCChhHhhcchhhhhhh--------------HHHHHHHHhhhhcCCCcccee
Confidence 7889999999 99999999999999999999999998665532 111122221122222222223
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccC
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
..-+.|+...+.+..+-...+ .-.+++.++.|||+...++
T Consensus 442 ~~~r~g~~rtl~Vq~t~~~~d--~~~gyVvt~DDITdLV~AQ 481 (712)
T COG5000 442 KLAREGEERTLNVQATREPED--NGNGYVVTFDDITDLVIAQ 481 (712)
T ss_pred ecccCCCceeeeeeeeecccc--cCCceEEEecchHHHHHHH
Confidence 334456666666655543322 2246788999999887553
|
|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0079 Score=61.41 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=75.9
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCch--hhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRAD--EVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~--e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+++.+.. ..+|++.+|. .|.|..+|.++++|+|+... +.+|++..++..|+ . .+...+
T Consensus 217 r~A~l~s--i~EGviAvd~---~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~---------~------~l~~vl 276 (537)
T COG3290 217 RQAMLQS--IKEGVIAVDK---KGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPD---------S------DLPEVL 276 (537)
T ss_pred HHHHHHH--hhceEEEECC---CCeEeehhHHHHHHhcccCcCcccccccceEeeccc---------c------CcHHHH
Confidence 3444444 8899999999 99999999999999999766 68898888776532 1 122334
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.+.+...+. .+-+|. ++.+...|+.. +++++|.+.++||-|+-+++.+
T Consensus 277 ~~~~~~~~~e--~~~ng~--~~i~nr~pI~~-~~~~~GaI~tFRdktei~~L~e 325 (537)
T COG3290 277 ETGKPQHDEE--IRINGR--LLVANRVPIRS-GGQIVGAIITFRDKTEIKKLTE 325 (537)
T ss_pred hcCCcccchh--hhcCCe--EEEEEeccEEE-CCEEeEEEEEEecHHHHHHHHH
Confidence 4454433322 122344 45677788874 6789999999999999887654
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0099 Score=40.02 Aligned_cols=45 Identities=33% Similarity=0.563 Sum_probs=37.8
Q ss_pred cccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhh
Q 048754 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVC 257 (625)
Q Consensus 212 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (625)
+..+|+|++ ..++..+++.++..+..+|++|+..+.+...|+..+
T Consensus 3 ~~~LP~~il-~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEIL-QEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHH-HHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHH-HHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 567899999 999999999999999999999999999999887653
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.012 Score=42.53 Aligned_cols=41 Identities=34% Similarity=0.535 Sum_probs=29.7
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFL 95 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l 95 (625)
.+++. ++++|+++| +++|+++|+++++++||+ ..|+....+
T Consensus 5 ~l~~~--~~~~i~i~d----~~~i~~~N~~~~~l~g~~---~~~~~~~~~ 45 (64)
T PF13188_consen 5 SLFDN--SPDGILIID----GGRIIYVNPAFEELFGYS---LEGEDIGQL 45 (64)
T ss_dssp HHHCC--SSSEEEEEE----TSBEEEE-HHHHHHHCS----HTCCCHHCT
T ss_pred HHHHc--CccceEEEE----CCChHHhhHHHHHHhCCC---CCCCCHHHh
Confidence 44445 999999998 348999999999999998 555554333
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.022 Score=36.69 Aligned_cols=39 Identities=38% Similarity=0.618 Sum_probs=35.3
Q ss_pred CchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHh
Q 048754 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRK 254 (625)
Q Consensus 215 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (625)
+|+|++ ..++..+++.++..+..+|++|+..+.+...|+
T Consensus 1 lP~~ll-~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEIL-EEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 467787 789999999999999999999999999998875
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.74 Score=46.19 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=73.8
Q ss_pred eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCce------
Q 048754 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVL------ 435 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~------ 435 (625)
.++.+.+++|+..+.. ..+.+||..|. .-...+.+ +.+...-.++.+ +++||+..........
T Consensus 70 ~F~al~gskIv~~d~~------~~t~vyDt~t~--av~~~P~l--~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS------GRTLVYDTDTR--AVATGPRL--HSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EEEEecCCeEEEEcCC------CCeEEEECCCC--eEeccCCC--CCCCcceEEEEe-CCeEEEeeccCccccccCccce
Confidence 3444457889988764 34889999988 55555554 333333455566 5679999775433211
Q ss_pred eceEEEEe------cCCCCCceEEcCCCCCCCCCC-------cceEEEECCcEEEEE-cCCcCCCCcccccCceEEEEcC
Q 048754 436 LSDTYLLD------LTTDKPMWREIPTSWSPPSRL-------GHSLSVYGRTKVLMF-GGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 436 ~~~~~~~d------~~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~l~v~-GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.-++..|+ .....+.|..++.+ |.... -.+-+++++..|+|. -|.. .-.|.||..
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~ 207 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTE 207 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcC
Confidence 22233344 23456778888752 32221 123334445578773 2211 246789988
Q ss_pred CCCCceeEeeec
Q 048754 502 DEEPQWKQLECN 513 (625)
Q Consensus 502 ~~~~~W~~~~~~ 513 (625)
+.+|+++..-
T Consensus 208 --~~~W~~~GdW 217 (342)
T PF07893_consen 208 --SHEWRKHGDW 217 (342)
T ss_pred --Ccceeeccce
Confidence 6699998553
|
|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0092 Score=48.77 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=36.3
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.....++|.++.++++|+++++++|++ ++++|.++.+++++++..
T Consensus 11 ~~~i~~~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~ 56 (113)
T PF00989_consen 11 PDGIFVIDEDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRR 56 (113)
T ss_dssp SSEEEEEETTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHH
T ss_pred CceEEEEeCcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhH
Confidence 333445587888889999999999999 999999999999987644
|
PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.9 Score=39.90 Aligned_cols=247 Identities=16% Similarity=0.250 Sum_probs=104.7
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEE-CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAA-GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 367 (625)
....|+.+.. |....-...... .+.-|++|-. -.+|-......+|..+...........+..+.+.
T Consensus 4 ~~~~W~~v~l----~t~~~l~dV~F~d~~~G~~VG~~---------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~ 70 (302)
T PF14870_consen 4 SGNSWQQVSL----PTDKPLLDVAFVDPNHGWAVGAY---------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD 70 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT---------TEEEEESSTTSS-EE-----S-----EEEEEEEE
T ss_pred cCCCcEEeec----CCCCceEEEEEecCCEEEEEecC---------CEEEEECCCCccccccccCCCccceeeEEEEEec
Confidence 3568999873 322222333333 4678888753 1234444444689987533222213334444455
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..|++|..+ + ++-...+-.+|++++... +.+-..+....+.++.++++|.. ..+|. -...
T Consensus 71 ~~~g~ivG~~g-------~-ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~--T~Dg 132 (302)
T PF14870_consen 71 GNEGWIVGEPG-------L-LLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGSAELAGDR-------GAIYR--TTDG 132 (302)
T ss_dssp TTEEEEEEETT-------E-EEEESSTTSS-EE----T-T-SS-EEEEEEEETTEEEEEETT---------EEE--ESST
T ss_pred CCceEEEcCCc-------e-EEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCcEEEEcCC-------CcEEE--eCCC
Confidence 67899887421 2 233322333899986321 22333345556667778877642 13333 2245
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceE-EEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESY-TIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~-~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
...|+.+... ....-.......++++++++.. ..++ ..|+- ...|......
T Consensus 133 G~tW~~~~~~---~~gs~~~~~r~~dG~~vavs~~----------G~~~~s~~~G--~~~w~~~~r~------------- 184 (302)
T PF14870_consen 133 GKTWQAVVSE---TSGSINDITRSSDGRYVAVSSR----------GNFYSSWDPG--QTTWQPHNRN------------- 184 (302)
T ss_dssp TSSEEEEE-S-------EEEEEE-TTS-EEEEETT----------SSEEEEE-TT---SS-EEEE---------------
T ss_pred CCCeeEcccC---CcceeEeEEECCCCcEEEEECc----------ccEEEEecCC--CccceEEccC-------------
Confidence 5569987642 1111222334456576666543 3443 34554 4579888753
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceE-EEECCcEEEEEcCcC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHST-CVVGGTRVLVLGGHT 603 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~-~~~~~~~i~i~GG~~ 603 (625)
..|.-.++....++.|+++. . -..+..=+......+|.+... +.+...++.-- +..+++.+++.||..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-R------GGQIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-T------TTEEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccceehhceecCCCCEEEEe-C------CcEEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 34444455555578888874 1 113444441114567877432 22233343333 333468999999864
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.65 E-value=7.5 Score=41.65 Aligned_cols=187 Identities=10% Similarity=0.053 Sum_probs=99.5
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCC-----ccceeEEEEcCCEEEEEccCCCCCc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPG-----RWGHTLSSLNGSWLVVFGGCGRQGL 382 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~-----r~~~~~~~~~~~~iyv~GG~~~~~~ 382 (625)
.+.++.++.||+.... +.++++|..+-...|+.-.... ...+ ....+. ++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~-av~~~~v~v~t~------ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGV-ALYDGKVFFGTL------ 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccc-eEECCEEEEEcC------
Confidence 4556779999986542 2389999887667898532111 0000 011122 334567776432
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC-
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP- 461 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~- 461 (625)
...++.+|..|++..|+.-............+-++. ++.+|+-..... ......++.||..+....|+.-..+..+.
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~ 206 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGDMGY 206 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCCccc
Confidence 135899999999889985432110111111223334 556666422111 11235788999999988897544311100
Q ss_pred -------------------CCCcc------eEEEEC--CcEEEEEcCCc----CCCC--cccccCceEEEEcCCCCCcee
Q 048754 462 -------------------SRLGH------SLSVYG--RTKVLMFGGLA----KSGH--LRLRSGESYTIDLGDEEPQWK 508 (625)
Q Consensus 462 -------------------~r~~~------~~~~~~--~~~l~v~GG~~----~~~~--~~~~~~~~~~~d~~~~~~~W~ 508 (625)
..+.+ ....++ .+.+|+--|.. .... -...++.+..+|+++....|.
T Consensus 207 ~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 207 LDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00111 111333 23566654541 1110 113367899999998888898
Q ss_pred Eee
Q 048754 509 QLE 511 (625)
Q Consensus 509 ~~~ 511 (625)
.-.
T Consensus 287 ~Q~ 289 (527)
T TIGR03075 287 YQT 289 (527)
T ss_pred eeC
Confidence 654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.15 Score=53.30 Aligned_cols=169 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceE------
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ------ 128 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 128 (625)
--|++++. +|.++|+++.....+|.+.=|+.|..+.++ .||.+..++.+++--...+.....
T Consensus 130 GFVm~l~~---dG~~lYiSEtVS~yLGLSQvELTG~SvFDf---------iHP~DheE~~eqL~l~~~~p~~~es~~~~t 197 (768)
T KOG3558|consen 130 GFVMALTQ---DGDFLYISETVSIYLGLSQVELTGSSVFDF---------IHPCDHEEIAEQLGLRLTTPEVKESTDTST 197 (768)
T ss_pred ceEEEEcc---CCCEEEEechhHhhhCccceeeecchhhhc---------cCccCHHHHHHHhccccCCCcccccccCcc
Confidence 34677888 999999999999999999999999998877 467676666555432222111000
Q ss_pred ---EEEEE---EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec---ccccCCcchhhhhhhhccc------cccc-
Q 048754 129 ---GELLN---FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA---KIDLNHVSYPVFKENCNQQ------YDQS- 192 (625)
Q Consensus 129 ---~e~~~---~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~---~~~~e~~~~~~~~~~~~~~------~~~~- 192 (625)
.-+|. +.+-|+...+..... +++.+.|-.+--+. -.-+--..+-+...-+... +.+.
T Consensus 198 eRsFflRMKsTLT~RGRtlnlKSa~y-------Kvlh~tgh~rv~~~~sh~s~~~g~~~Pl~~lV~~a~alp~ps~~Eip 270 (768)
T KOG3558|consen 198 ERSFFLRMKSTLTKRGRTLNLKSAGY-------KVLHCTGHLRVYNNPSHNSPLCGYKEPLLGLVALAEALPPPSYTEIP 270 (768)
T ss_pred ceeEEEEeeeeeccCCceeeeeccce-------eEEEEeeeeeeccCCCCCCcccCccccchheeeeeccCCCCcccccc
Confidence 00111 223333222222111 22222222210000 0000000000000000000 0111
Q ss_pred ----cccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 193 ----AQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 193 ----~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..+. ..|.++.|.-+++..+.||. +|++|..+..++|+.|-..+....+.
T Consensus 271 L~~~~FvtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~d 327 (768)
T KOG3558|consen 271 LDCHMFVTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHD 327 (768)
T ss_pred cCCceeEEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHH
Confidence 1111 45667779999999999999 99999999999999998887554443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=94.50 E-value=6 Score=39.87 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=137.8
Q ss_pred ccceeeeecccCeeEEeeecCCCCCCCcccceEE--ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC
Q 048754 280 RLARELTTLEAVCWRKFTVRGAVEPSRCNFSACA--AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG 357 (625)
Q Consensus 280 ~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~ 357 (625)
.++...+|...+.+..+........| .+ ++. -++.||+..... .....+..|.+...+.+.+.+........
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~P--s~-l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENP--SW-LAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSE--CC-EEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCC--ce-EEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 34444456678888776632211111 11 222 366788886543 12334777777664356766632211111
Q ss_pred ccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcC-------CC---CCCCCCccceEEEE-cCCEEEEE
Q 048754 358 RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS-------GG---APPLPRSWHSSCII-EGSKLVVS 426 (625)
Q Consensus 358 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~-------~~---~~p~~r~~~~~~~~-~~~~iyv~ 426 (625)
.-+|-+..-+++.+|+.- +. .+.+.+|++... ..-.... .. .....-.-|.+... +++.+|+.
T Consensus 88 ~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp CEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred CcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 222322222456677653 11 135777777653 1222110 01 01122334555555 44567774
Q ss_pred cCcCCCCceeceEEEEecCCCCCceEEcCCCCCC---CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCC
Q 048754 427 GGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP---PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503 (625)
Q Consensus 427 GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p---~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~ 503 (625)
.= -.+.+++|+++..+.+......-..| .|| |.+..-++..+|+.... .+.+.+|++...
T Consensus 162 dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~---------s~~v~v~~~~~~ 224 (345)
T PF10282_consen 162 DL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL---------SNTVSVFDYDPS 224 (345)
T ss_dssp ET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT---------TTEEEEEEEETT
T ss_pred ec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC---------CCcEEEEeeccc
Confidence 21 13678999987665334332110011 132 33333344589998654 367777776633
Q ss_pred CCceeEeeeccccCcCCCCCCCCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcC---CCC
Q 048754 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNV---PGQ 578 (625)
Q Consensus 504 ~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~---~~~ 578 (625)
...++.+....... .........+.+.+. +..||+.-.. .+.|.+|++...+...+.+.. .|.
T Consensus 225 ~g~~~~~~~~~~~~------~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~ 292 (345)
T PF10282_consen 225 DGSLTEIQTISTLP------EGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGK 292 (345)
T ss_dssp TTEEEEEEEEESCE------TTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSS
T ss_pred CCceeEEEEeeecc------ccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCC
Confidence 44666655442100 001111133444443 4467876432 667888888424455555431 232
Q ss_pred CCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCC
Q 048754 579 PPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQ 621 (625)
Q Consensus 579 ~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~ 621 (625)
.| ..+.+..+++.+++++..+ +.|.+|+++..+
T Consensus 293 ~P-----r~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~t 325 (345)
T PF10282_consen 293 FP-----RHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDT 325 (345)
T ss_dssp SE-----EEEEE-TTSSEEEEEETTT-----TEEEEEEEETTT
T ss_pred Cc-----cEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCC
Confidence 22 2444455556555554333 557777776544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=6.6 Score=40.04 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=112.8
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.+..++++|+...- ..++.+|..+-...|+..... ....-.+-....+++||+-...+ .++.||
T Consensus 64 ~~~~dg~v~~~~~~-------G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g------~~y~ld 127 (370)
T COG1520 64 PADGDGTVYVGTRD-------GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG------KLYALD 127 (370)
T ss_pred cEeeCCeEEEecCC-------CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc------eEEEEE
Confidence 46778899997211 148999998854468754221 00111111112245666554422 689999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
..+++..|..-... . ++.. +.++..+..+|+.- ....++.+|.++.+..|..-.... ...+...+..
T Consensus 128 ~~~G~~~W~~~~~~--~-~~~~-~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~- 194 (370)
T COG1520 128 ASTGTLVWSRNVGG--S-PYYA-SPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA- 194 (370)
T ss_pred CCCCcEEEEEecCC--C-eEEe-cCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-
Confidence 98888899966543 2 3332 23344354566532 124788999988888998543211 1222222222
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
+.++.+|+-... . ...++.+|+++.+..|..-..... +..... ....+.+..|++-||.-
T Consensus 195 ~~~~~vy~~~~~--~------~~~~~a~~~~~G~~~w~~~~~~~~-------~~~~~~----~~~~~~~~~v~v~~~~~- 254 (370)
T COG1520 195 IASGTVYVGSDG--Y------DGILYALNAEDGTLKWSQKVSQTI-------GRTAIS----TTPAVDGGPVYVDGGVY- 254 (370)
T ss_pred eecceEEEecCC--C------cceEEEEEccCCcEeeeeeeeccc-------Cccccc----ccccccCceEEECCcEE-
Confidence 444356554221 0 137899999877888985332210 000000 01112133444443311
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.......++++|..+.+..|+.-.
T Consensus 255 ~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 255 AGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EEecCCeEEEEEcCCCceEEEEec
Confidence 011134588888866677887664
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.9 Score=37.22 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC--CCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK--SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
++...+.+|+|-|. .+|+++.......-..|... +.| .....+...-.++++|+|-| +..|+
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC-------CEEEE
Confidence 34456889999773 16777653211122223211 112 12222222222368999977 36888
Q ss_pred EECCCCCCE-EEEcCC-CCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCc--e-EEcCCCCCCCC
Q 048754 389 LDLDAKQPT-WIEVSG-GAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM--W-REIPTSWSPPS 462 (625)
Q Consensus 389 ~d~~t~~~~-W~~~~~-~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~--W-~~~~~~~~p~~ 462 (625)
|+..+.... -..+.. +.++.+..-.++.... ++++|+|.| +..|.||....+.. . ..+.......+
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 886542001 112222 1111112223343443 568999988 46788886443310 0 01111111122
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..-.++....++++|++-| +.+|+||..+
T Consensus 148 ~~idaa~~~~~~~~yfF~g-----------~~y~~~d~~~ 176 (194)
T cd00094 148 DKVDAAFRWLDGYYYFFKG-----------DQYWRFDPRS 176 (194)
T ss_pred CCcceeEEeCCCcEEEEEC-----------CEEEEEeCcc
Confidence 2223344455458999866 6889999873
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=6.7 Score=39.68 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+++|+..|+... .+.+||..+ +.--+.+.....|..+. -....++.+++.|+-+. -+-.+|..+.
T Consensus 79 DG~LlaaGD~sG------~V~vfD~k~-r~iLR~~~ah~apv~~~---~f~~~d~t~l~s~sDd~-----v~k~~d~s~a 143 (487)
T KOG0310|consen 79 DGRLLAAGDESG------HVKVFDMKS-RVILRQLYAHQAPVHVT---KFSPQDNTMLVSGSDDK-----VVKYWDLSTA 143 (487)
T ss_pred CCeEEEccCCcC------cEEEecccc-HHHHHHHhhccCceeEE---EecccCCeEEEecCCCc-----eEEEEEcCCc
Confidence 688999998643 388999544 11222222222333332 22234678888887543 2344555555
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.-+ .+.+ ....-|.+ ++.-.++.|++.||++. .+-.||..+.+ .|..--+.+.|.. .++.+.+
T Consensus 144 --~v~~~l~~-htDYVR~g--~~~~~~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe----~vl~lps 207 (487)
T KOG0310|consen 144 --YVQAELSG-HTDYVRCG--DISPANDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVE----SVLALPS 207 (487)
T ss_pred --EEEEEecC-CcceeEee--ccccCCCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCcee----eEEEcCC
Confidence 211 2222 11223332 12223457999999753 56777865543 3543222334433 2444554
Q ss_pred cE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-----EEEEecCCEEEEEec
Q 048754 474 TK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-----VAVSMPCGRIIIFGG 547 (625)
Q Consensus 474 ~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-----~~~~~~~~~l~v~GG 547 (625)
+. |...|| +.+.++|+.++.. . +..+.+| +.....++.=++.||
T Consensus 208 gs~iasAgG-----------n~vkVWDl~~G~q---l----------------l~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 208 GSLIASAGG-----------NSVKVWDLTTGGQ---L----------------LTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred CCEEEEcCC-----------CeEEEEEecCCce---e----------------hhhhhcccceEEEEEeecCCceEeecc
Confidence 34 444444 6777888764211 1 1112212 233333456677777
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
.+ ..+-+||++ .|+.+..- ..|.+- -++.+.++++.+++|+.++-
T Consensus 258 LD------~~VKVfd~t----~~Kvv~s~-~~~~pv--Lsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 258 LD------RHVKVFDTT----NYKVVHSW-KYPGPV--LSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred cc------cceEEEEcc----ceEEEEee-ecccce--eeEEecCCCceEEEecccce
Confidence 64 366788863 56666421 122221 35666677899999987764
|
|
| >smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.31 Score=29.43 Aligned_cols=40 Identities=33% Similarity=0.427 Sum_probs=32.9
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
+......+|...|+.....++.+..+.+.+++++.+|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ 42 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITE 42 (43)
T ss_pred EEEEEecCCCEEEEEEEeEEEECCCCCEEEEEEEEEeccC
Confidence 3455677888888888888888888888899999999985
|
PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold. |
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.096 Score=56.80 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCc--hhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRA--DEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
...++++++|. +|+|+.+|+++++++|++. ++++|++..++..+. ... ....... . .
T Consensus 230 ~~~egii~~D~---~g~I~~~N~~a~~ll~~~~~~~~~~g~~~~~~~~~~------------~~~---~~~~~~~-~-~- 288 (545)
T PRK15053 230 SVYEGLIAVDP---HGYITAINRNARKMLGLSSPGRQWLGKPIAEVVRPA------------DFF---TEQIDEK-R-Q- 288 (545)
T ss_pred HhCceEEEECC---CCeEEeecHHHHHHhCCCCcchhhcCCcHHHhCCCc------------hhh---hhhcCCc-c-c-
Confidence 37899999999 9999999999999999965 468998877664311 111 0111111 0 1
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+ .....+|. .+.+...|+.. ++.+.+.+.+.+|+|+.+++++
T Consensus 289 ~-~~~~~~~~--~~~~~~~~i~~-~~~~~G~v~~~~d~te~~~l~~ 330 (545)
T PRK15053 289 D-VVANFNGL--SVIANREAIRS-GDDLLGAIISFRSKDEISTLNA 330 (545)
T ss_pred c-eEEEECCE--EEEEEeeeEEE-CCeEEEEEEEEEchHHHHHHHH
Confidence 1 11222443 34456677764 5667899999999998876544
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=8.3 Score=38.63 Aligned_cols=244 Identities=11% Similarity=0.158 Sum_probs=112.9
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEEC-CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAAG-NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN 367 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 367 (625)
....|+... .|....-...+..+ +..|+.|-. -.++.......+|+++... .|..........+.
T Consensus 33 ~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~---------G~il~T~DgG~tW~~~~~~-~~~~~~~l~~v~~~ 98 (334)
T PRK13684 33 SSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN---------RTLLETNDGGETWEERSLD-LPEENFRLISISFK 98 (334)
T ss_pred cCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC---------CEEEEEcCCCCCceECccC-CcccccceeeeEEc
Confidence 456798885 23322333333333 466766632 1234333334689987432 22222212222233
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCC-CCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGG-APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++..++.|.. .-++ -....-.+|+++... ..|.. ......+.++.+++.|.. ..++.-+ .
T Consensus 99 ~~~~~~~G~~------g~i~--~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~g~~-------G~i~~S~--D 159 (334)
T PRK13684 99 GDEGWIVGQP------SLLL--HTTDGGKNWTRIPLSEKLPGS--PYLITALGPGTAEMATNV-------GAIYRTT--D 159 (334)
T ss_pred CCcEEEeCCC------ceEE--EECCCCCCCeEccCCcCCCCC--ceEEEEECCCcceeeecc-------ceEEEEC--C
Confidence 4456666532 1233 332222389988642 12221 122334444456665531 1233322 3
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
...+|+.+... ..-..+.+....++.++++|.. ..++.- ......+|+.+.. +
T Consensus 160 gG~tW~~~~~~---~~g~~~~i~~~~~g~~v~~g~~----------G~i~~s-~~~gg~tW~~~~~-------------~ 212 (334)
T PRK13684 160 GGKNWEALVED---AAGVVRNLRRSPDGKYVAVSSR----------GNFYST-WEPGQTAWTPHQR-------------N 212 (334)
T ss_pred CCCCceeCcCC---CcceEEEEEECCCCeEEEEeCC----------ceEEEE-cCCCCCeEEEeeC-------------C
Confidence 44569998742 2223344444555455555432 222222 1112458998853 2
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC-cceEEEECCcEEEEEcCc
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW-GHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~-~~~~~~~~~~~i~i~GG~ 602 (625)
..+.-.++....++.++++|.. -..++...+.-.+|+.+..+. +.... -+++.+.+++.+++.|..
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg~~--------G~~~~~s~d~G~sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLARG--------GQIRFNDPDDLESWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred CcccceeeeEcCCCCEEEEecC--------CEEEEccCCCCCccccccCCc--cccccceeeEEEcCCCCEEEEcCC
Confidence 3334445455557788888653 112342111346898764311 11112 233344445678877664
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.099 Score=62.65 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=29.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchh
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADE 86 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e 86 (625)
+..+++|+++|. +|+|+++|+++++++|++..+
T Consensus 583 ~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~ 615 (1197)
T PRK09959 583 DSLPNPTYVVNW---QGNVISHNSAFEHYFTADYYK 615 (1197)
T ss_pred hhCCCcEEEEcC---CCcEEEehHHHHHHhCccccc
Confidence 449999999999 999999999999999986543
|
|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.079 Score=51.69 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=81.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+.+.|.-|-.+|. ++++.+.|+. +++|-.++.. +|++...- ||-........+.+.+..|..-..
T Consensus 296 f~~lP~Ditfvdk---~diV~ffs~~-~rif~rt~sv-iGr~v~~c----------hpPksv~iv~ki~~~fksG~kd~~ 360 (409)
T COG2461 296 FKHLPVDITFVDK---NDIVRFFSGG-ERIFPRTPSV-IGRRVQLC----------HPPKSVHIVEKILKDFKSGEKDFA 360 (409)
T ss_pred HhhCCCceEEecc---cceEEecCCc-ceecccChHh-hCCcccCC----------CCCchHHHHHHHHHHhhcCCcchH
Confidence 3337766667788 9999999998 7888877765 68776544 233455677788888888887777
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+++.. .|. ..+.++..+++|++|.-.|.+-+.+|||..++++-
T Consensus 361 efw~~--~~~-~~i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~g 403 (409)
T COG2461 361 EFWIN--MGD-KFIHIRYFAVKDEEGEYLGTLEVVQDITRIKELEG 403 (409)
T ss_pred HHhcc--CCC-ceEEEEEEEEEcCCCceeeeehhhhhhHHHHhccc
Confidence 77732 222 25678899999999999999999999999987754
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.61 E-value=12 Score=40.12 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=71.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC-CCCC----ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPR----SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~-p~~r----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+.... +.++.+|..|++..|+.-..... ..+. .....+.+.++++|+... ...++
T Consensus 67 v~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ 133 (527)
T TIGR03075 67 VVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLV 133 (527)
T ss_pred EECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEE
Confidence 446788886542 35899999999889985442110 0000 001122344667776321 13689
Q ss_pred EEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 441 LLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
.+|.++.+..|+.-... ... .....+.++.++ .+|+-......+. ...++.||.++....|+.-.
T Consensus 134 ALDa~TGk~~W~~~~~~-~~~~~~~tssP~v~~g-~Vivg~~~~~~~~----~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGD-YKAGYTITAAPLVVKG-KVITGISGGEFGV----RGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEECCCCCEEeeccccc-ccccccccCCcEEECC-EEEEeecccccCC----CcEEEEEECCCCceeEeccC
Confidence 99999999999864321 111 112223444554 6666422111111 35788899988777887543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.5 Score=41.35 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
.-.+.+.+|++.. +..|.++.+.+.- ..+....-|.. +++.. +|...++++|.. .-+|.||..
T Consensus 224 ~~plllvaG~d~~------lrifqvDGk~N~~lqS~~l~~fPi~----~a~f~p~G~~~i~~s~rr-----ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT------LRIFQVDGKVNPKLQSIHLEKFPIQ----KAEFAPNGHSVIFTSGRR-----KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCc------EEEEEecCccChhheeeeeccCccc----eeeecCCCceEEEecccc-----eEEEEeecc
Confidence 3458888887544 4555555432331 11111112221 22222 344477777753 248999999
Q ss_pred CCCCEEEEcCCCCCCCCCccceE-EEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSS-CIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+. +-.++..+..-..+.-+.. +..++ .++++-|.. .-++++...| ..|. ..-..+......+. .-
T Consensus 289 ~a--k~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~------G~I~lLhakT--~eli--~s~KieG~v~~~~f-sS 354 (514)
T KOG2055|consen 289 TA--KVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNN------GHIHLLHAKT--KELI--TSFKIEGVVSDFTF-SS 354 (514)
T ss_pred cc--ccccccCCCCcccchhheeEecCCC-CeEEEcccC------ceEEeehhhh--hhhh--heeeeccEEeeEEE-ec
Confidence 88 7777654322222222222 23334 466666632 2345555333 3352 11111111111122 22
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++..|++.||. .++|++|+..
T Consensus 355 dsk~l~~~~~~----------GeV~v~nl~~ 375 (514)
T KOG2055|consen 355 DSKELLASGGT----------GEVYVWNLRQ 375 (514)
T ss_pred CCcEEEEEcCC----------ceEEEEecCC
Confidence 33478888885 7999999984
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=9.1 Score=38.24 Aligned_cols=111 Identities=15% Similarity=0.001 Sum_probs=51.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+.. .+.+.+|++.. ..++..+.....+. ...+.+..-+++.+|+..- . .+.+.+|+++++
T Consensus 46 ~~~lyv~~~~------~~~i~~~~~~~-~g~l~~~~~~~~~~-~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~ 112 (330)
T PRK11028 46 KRHLYVGVRP------EFRVLSYRIAD-DGALTFAAESPLPG-SPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKD 112 (330)
T ss_pred CCEEEEEECC------CCcEEEEEECC-CCceEEeeeecCCC-CceEEEECCCCCEEEEEEc-C----CCeEEEEEECCC
Confidence 5567775442 13477788763 24565443211111 1122222224556666642 1 246777877643
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
......+... +....-|.++.. +++.+|+..- ..+.+.+||+++
T Consensus 113 g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~ 157 (330)
T PRK11028 113 GIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSD 157 (330)
T ss_pred CCCCCceeec--cCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECC
Confidence 1111112111 111223444333 4456666432 225788999865
|
|
| >PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.3 Score=37.88 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+.+|+.-+. ..+-.++|.|.++.+|++++-+++.+.+...-.. |...+.....+.++..+|-.....-.
T Consensus 40 ap~ailsh~~-~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~sae---------~~~r~er~~lL~~v~~qG~~~~y~Gi 109 (148)
T PF08670_consen 40 APFAILSHGT-KADPIFIYANQAALDLFETTWDELVGLPSRLSAE---------EPERKERQSLLAQVMQQGYIDNYSGI 109 (148)
T ss_pred CCCEEEEcCC-CCCCEEEehhHHHHHHhcCCHHHHhcCcHhhccC---------hhhHHHHHHHHHHHHHhCCccCCCeE
Confidence 6778877653 1255899999999999999999999987654432 12233444455555555543333445
Q ss_pred EEeecCcceeEEE-EEEEeeCCCCCEEEEEEEEEe
Q 048754 133 NFKKDGTPLVNRL-RLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 133 ~~~~dG~~~~~~~-~~~~~~d~~g~~~~~i~~~~D 166 (625)
.+.+.|+.++++- .+=.+.|++|...+.-.++.+
T Consensus 110 Riss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~ 144 (148)
T PF08670_consen 110 RISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSN 144 (148)
T ss_pred EEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEee
Confidence 5677888877643 444577888988777665544
|
|
| >TIGR02373 photo_yellow photoactive yellow protein | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.87 Score=37.16 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=46.8
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCC-cccccCCcccccCCCCCC-hHHHHHHHHHHHhC
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNC-RFLQYRDPRAQRRHPLVD-PVVVSEIRRCLEEG 124 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 124 (625)
.+..+-|++.+|. +|.|+..|.+-.++.|++++.++|++. .++. |-.+ +.+...+.+..+++
T Consensus 22 lD~lpFGvI~lD~---~G~V~~YN~aE~~~sg~~p~~vlGr~FF~eVA----------PC~~~~~f~gRF~~g~~~g 85 (124)
T TIGR02373 22 FDALPFGAIQLDG---SGVILRYNAAEGRITGRDPERVIGRNFFKEVA----------PCTDIPEFSGRFMEGVASG 85 (124)
T ss_pred hhcCCcceEEECC---CCEEEEEecchhhhcCCChhhhhchhhhhhcc----------cccCCHHHHHHHHhhhhcC
Confidence 4448999999999 999999999999999999999999974 3332 3333 33455565555544
|
Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by TIGR02372 is required for its biosynthesis. The modified Cys is in a PAS (pfam00989) domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=92.50 E-value=7 Score=39.23 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccc-----cEEE
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLN-----DVFV 388 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~-----~~~~ 388 (625)
.+++|+..+.. ..+.+||..+. .-..+ +.++.+...-.+..+ +++||++.......... .++.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~--av~~~--P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTR--AVATG--PRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCC--eEecc--CCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEE
Confidence 58899988765 22789998873 33322 333333333333445 56799998764322111 3334
Q ss_pred E--E------CCCCCCEEEEcCCCCCCCCCcc-------ceEEEEcCCEEEE-EcCcCCCCceeceEEEEecCCCCCceE
Q 048754 389 L--D------LDAKQPTWIEVSGGAPPLPRSW-------HSSCIIEGSKLVV-SGGCTDAGVLLSDTYLLDLTTDKPMWR 452 (625)
Q Consensus 389 ~--d------~~t~~~~W~~~~~~~~p~~r~~-------~~~~~~~~~~iyv-~GG~~~~~~~~~~~~~~d~~~~~~~W~ 452 (625)
+ + .....+.|..++.+ |-.+.. .+-++++|..|+| .-|.. .-.|.||..+ .+|+
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~--~~W~ 212 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTES--HEWR 212 (342)
T ss_pred eccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCC--ccee
Confidence 3 4 22345578888753 333221 1222225778888 33211 2368889554 5599
Q ss_pred EcCC
Q 048754 453 EIPT 456 (625)
Q Consensus 453 ~~~~ 456 (625)
++..
T Consensus 213 ~~Gd 216 (342)
T PF07893_consen 213 KHGD 216 (342)
T ss_pred eccc
Confidence 9864
|
|
| >KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.37 Score=51.77 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=36.4
Q ss_pred cccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHHHHHhh
Q 048754 204 SQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRRIRQLT 247 (625)
Q Consensus 204 ~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (625)
+|-+++-.++||- .|++|..++.++|++|+..+....+.+....
T Consensus 345 hVDeaAVp~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~ 389 (1114)
T KOG3753|consen 345 HVDEAAVPLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSG 389 (1114)
T ss_pred ecchhhhhhhccCchhhhccchhhhhcCCchHHHHHHHHHHHHhC
Confidence 8889999999997 9999999999999999877766665544443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=92.05 E-value=14 Score=36.94 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC----CCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR----QGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~d~ 391 (625)
..+||.-...... .+.++++|..+ ++.+ ...+.....+....-+++.+|+.-.+.. ....+.+.+||+
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~----~~v~--g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEA----GRVL--GMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCC----CEEE--EEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 4466665532211 26799999876 3333 1122222222233345778999977422 223567999999
Q ss_pred CCCCCEEEEcCCCCCCCCCc-----c-ceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 392 DAKQPTWIEVSGGAPPLPRS-----W-HSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~-----~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
.|.+... +++.+ +.||+ - ..+..-+|+.+||.- -.+.+.+-+.|+.+..
T Consensus 85 ~t~~~~~-~i~~p--~~p~~~~~~~~~~~~ls~dgk~l~V~n-----~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 85 QTHLPIA-DIELP--EGPRFLVGTYPWMTSLTPDNKTLLFYQ-----FSPSPAVGVVDLEGKA 139 (352)
T ss_pred ccCcEEe-EEccC--CCchhhccCccceEEECCCCCEEEEec-----CCCCCEEEEEECCCCc
Confidence 9883222 34332 33342 1 223333566778742 1234678888876644
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.98 E-value=12 Score=37.84 Aligned_cols=148 Identities=11% Similarity=0.147 Sum_probs=74.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEE--EcCCCCCCCCCccceEEEEcCCE-EEEEcCcCCCCceeceEEEEe
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI--EVSGGAPPLPRSWHSSCIIEGSK-LVVSGGCTDAGVLLSDTYLLD 443 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~--~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d 443 (625)
...-+.+.+|.++. -.+|..|-.++. .-+ .+... |. .+++...++. .++++|.. .-+|.||
T Consensus 223 p~~plllvaG~d~~---lrifqvDGk~N~-~lqS~~l~~f--Pi----~~a~f~p~G~~~i~~s~rr------ky~ysyD 286 (514)
T KOG2055|consen 223 PTAPLLLVAGLDGT---LRIFQVDGKVNP-KLQSIHLEKF--PI----QKAEFAPNGHSVIFTSGRR------KYLYSYD 286 (514)
T ss_pred CCCceEEEecCCCc---EEEEEecCccCh-hheeeeeccC--cc----ceeeecCCCceEEEecccc------eEEEEee
Confidence 44568888887653 245666665552 111 12221 21 1233333334 77777732 3578999
Q ss_pred cCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 444 LTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 444 ~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
+.+.. -+++... +.+ .+.-+...+-.++.++++-|.. .-++.+... +..|..--.
T Consensus 287 le~ak--~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~---------G~I~lLhak--T~eli~s~K---------- 342 (514)
T KOG2055|consen 287 LETAK--VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNN---------GHIHLLHAK--TKELITSFK---------- 342 (514)
T ss_pred ccccc--cccccCCCCcc-cchhheeEecCCCCeEEEcccC---------ceEEeehhh--hhhhhheee----------
Confidence 86655 6666532 222 2233333333333566666653 455566555 445532211
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
...+....++...+..|++.|| ..+||++|+.
T Consensus 343 ---ieG~v~~~~fsSdsk~l~~~~~-------~GeV~v~nl~ 374 (514)
T KOG2055|consen 343 ---IEGVVSDFTFSSDSKELLASGG-------TGEVYVWNLR 374 (514)
T ss_pred ---eccEEeeEEEecCCcEEEEEcC-------CceEEEEecC
Confidence 1222222333332345667766 4599999993
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=91.45 E-value=11 Score=34.32 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcC-CEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEG-SKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.+++|+|-| +.+|+++.......-..+...-+..+..-.++..... +++|+|-| +..|.|+..+
T Consensus 16 ~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg--------~~yw~~~~~~ 80 (194)
T cd00094 16 RGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG--------DKYWVYTGKN 80 (194)
T ss_pred CCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC--------CEEEEEcCcc
Confidence 368999977 3578887642211223333211111222233434433 68999977 3678887542
Q ss_pred CCCce-EEcCCCCCCC--CCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 447 DKPMW-REIPTSWSPP--SRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 447 ~~~~W-~~~~~~~~p~--~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
..... ..+..-+.|. ... -++.... ++++|++-| +..|+||... .+.. ...+.....
T Consensus 81 ~~~~~Pk~i~~~~~~~~~~~i-DAA~~~~~~~~~yfFkg-----------~~y~ry~~~~--~~v~--~~yP~~i~~--- 141 (194)
T cd00094 81 LEPGYPKPISDLGFPPTVKQI-DAALRWPDNGKTYFFKG-----------DKYWRYDEKT--QKMD--PGYPKLIET--- 141 (194)
T ss_pred cccCCCcchhhcCCCCCCCCc-cEEEEEcCCCEEEEEeC-----------CEEEEEeCCC--cccc--CCCCcchhh---
Confidence 11001 1121101221 112 2333343 569999977 6788898652 2211 000000000
Q ss_pred CCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 523 AVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 523 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...-.+..-.+++...++++|.|-|. ..|+||.
T Consensus 142 ~w~g~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~ 174 (194)
T cd00094 142 DFPGVPDKVDAAFRWLDGYYYFFKGD--------QYWRFDP 174 (194)
T ss_pred cCCCcCCCcceeEEeCCCcEEEEECC--------EEEEEeC
Confidence 00111222345555645889999664 7899998
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.085 Score=42.07 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
+++.+..++++|+++++++|++ ++++|.++..++++++..
T Consensus 6 i~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 46 (104)
T PF13426_consen 6 ILDPDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRP 46 (104)
T ss_dssp EEETTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCH
T ss_pred EECCcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccch
Confidence 4477777889999999999999 899988898888866533
|
... |
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.095 Score=49.62 Aligned_cols=100 Identities=22% Similarity=0.457 Sum_probs=67.7
Q ss_pred ccccccccCchhHHHHhhhcccCc-----hhhhhHHhHHHHHHHhhcchhHHhhhhhhcccccccchhcccccccccccc
Q 048754 207 QDICGILQLSDEVLAHNILSRLTP-----RDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALELMTKKLGWGRL 281 (625)
Q Consensus 207 ~~~~~~~g~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (625)
++...+.-+|+|++ ..++..+-+ .++.++..+||.|+..++++++|+.-|...|+... ..+
T Consensus 102 p~~~~~~~LPdEvL-m~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~-------------~~l 167 (366)
T KOG2997|consen 102 PELISISVLPDEVL-MRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSC-------------IKL 167 (366)
T ss_pred hhhhhhhhCCHHHH-HHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhh-------------hcc
Confidence 55555789999998 777766554 88999999999999999999999999999887764 111
Q ss_pred ceeee-ecccCeeEEeeecCCCCCCCcccceEEECCEEEEEccc
Q 048754 282 ARELT-TLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGE 324 (625)
Q Consensus 282 ~~~~~-~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 324 (625)
..... ......|+.+= .-.||.-+-.|.+...=|+=-|.
T Consensus 168 n~~~~~sky~~SWR~Mf----l~RpRvrFdG~YIS~~tYiR~G~ 207 (366)
T KOG2997|consen 168 NPKILQSKYYTSWREMF----LERPRVRFDGVYISKTTYIRQGE 207 (366)
T ss_pred chhhhhhHHHhHHHHHH----hhCcceeecceEEEEEeEeecCc
Confidence 11111 11245677542 33345555555555555665564
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=90.90 E-value=16 Score=35.28 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=107.4
Q ss_pred ccCeeEEeeecCCCC--CCCcccceEEE--CCEEEEEcccCCCCC--CCCCe-EEEeccCCCCceEEccc-CC---CCCC
Q 048754 289 EAVCWRKFTVRGAVE--PSRCNFSACAA--GNRLVLFGGEGVNMQ--PMDDT-FVLNLDAANPEWRRVSV-KS---SPPG 357 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~--~~~~~-~~~~~~~~~~~W~~~~~-~~---~p~~ 357 (625)
.-.+|.........+ ..+.+..+.+. ++.|++|........ ....+ +....+ ...+|..... .. ....
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D-~G~TWs~~~~l~~~~~~~~~ 106 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTD-GGKTWSEPTDLPPGWFGNFS 106 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESS-TTSS-EEEEEEHHHCCCSCE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECC-CCCCCCCcccccccccccee
Confidence 346798766433333 22333333332 788888863221111 11111 233333 2368987631 10 1111
Q ss_pred cccee-EEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEE-EEcCCEEEEEcCcCCCCc
Q 048754 358 RWGHT-LSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSC-IIEGSKLVVSGGCTDAGV 434 (625)
Q Consensus 358 r~~~~-~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~-~~~~~~iyv~GG~~~~~~ 434 (625)
..... ...+.++.+++.. +.. .........+..+.+ .+|....... +.....+.+. ...++.++++--.. ...
T Consensus 107 ~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~~ 182 (275)
T PF13088_consen 107 GPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGG-KTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GND 182 (275)
T ss_dssp ECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTT-SSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SST
T ss_pred ccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCC-ceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CCC
Confidence 11222 1334456777762 111 111233444555544 3798765421 1223333333 34566788775432 111
Q ss_pred eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeecc
Q 048754 435 LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNA 514 (625)
Q Consensus 435 ~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 514 (625)
.++.+--.....+|+.......|.+.....++...++.++++.... ... ..+.++-...+..+|.......
T Consensus 183 ---~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~r-----~~l~l~~S~D~g~tW~~~~~i~ 253 (275)
T PF13088_consen 183 ---DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNP-DGR-----SNLSLYVSEDGGKTWSRPKTID 253 (275)
T ss_dssp ---EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECS-STS-----EEEEEEEECTTCEEEEEEEEEE
T ss_pred ---cEEEEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECC-CCC-----CceEEEEEeCCCCcCCccEEEe
Confidence 3444433344557998643234555555555555666887776621 111 2333332333367999776652
Q ss_pred ccCcCCCCCCCC-CCccceEEEEecCCEEEE
Q 048754 515 FTGVGSQSAVVP-PPRLDHVAVSMPCGRIII 544 (625)
Q Consensus 515 ~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~v 544 (625)
..+ ..-.+.+++...+++|+|
T Consensus 254 ---------~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 254 ---------DGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ---------EEE-CCEEEEEEEEEETTEEEE
T ss_pred ---------CCCCCcEECCeeEEeCCCcCCC
Confidence 111 113455666666778886
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=90.70 E-value=23 Score=36.71 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=73.3
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..++++|+.++ ....+... +.... .....-+++.+++...... ..++|.+|+.+.. ...+..... ..
T Consensus 214 ~~i~v~d~~~g--~~~~~~~~--~~~~~-~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~--~~~l~~~~~--~~ 280 (417)
T TIGR02800 214 PEIYVQDLATG--QREKVASF--PGMNG-APAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQ--LTRLTNGPG--ID 280 (417)
T ss_pred cEEEEEECCCC--CEEEeecC--CCCcc-ceEECCCCCEEEEEECCCC----CccEEEEECCCCC--EEECCCCCC--CC
Confidence 57999999887 55554432 11111 1122224555665433211 2478999986654 666653211 11
Q ss_pred CcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
...... ++..|++..... + ...+|.+|+. +..+..+... ...........+++.
T Consensus 281 --~~~~~s~dg~~l~~~s~~~--g-----~~~iy~~d~~--~~~~~~l~~~--------------~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 281 --TEPSWSPDGKSIAFTSDRG--G-----SPQIYMMDAD--GGEVRRLTFR--------------GGYNASPSWSPDGDL 335 (417)
T ss_pred --CCEEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEeecC--------------CCCccCeEECCCCCE
Confidence 111222 333454443221 1 2578999987 4466655432 111122223335666
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+++..... ....++.+|+ .+..+..+.
T Consensus 336 i~~~~~~~---~~~~i~~~d~--~~~~~~~l~ 362 (417)
T TIGR02800 336 IAFVHREG---GGFNIAVMDL--DGGGERVLT 362 (417)
T ss_pred EEEEEccC---CceEEEEEeC--CCCCeEEcc
Confidence 66654432 2347999999 455555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=24 Score=36.84 Aligned_cols=232 Identities=20% Similarity=0.192 Sum_probs=104.8
Q ss_pred CCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPR 410 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r 410 (625)
...+|++|.... .=+++.....+ ..+....-++++|+...-..+ ...+|++|+.++ ....+... +..
T Consensus 181 ~~~l~~~d~dg~--~~~~lt~~~~~---v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g--~~~~l~~~--~g~- 247 (435)
T PRK05137 181 IKRLAIMDQDGA--NVRYLTDGSSL---VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETG--QRELVGNF--PGM- 247 (435)
T ss_pred ceEEEEECCCCC--CcEEEecCCCC---eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCC--cEEEeecC--CCc-
Confidence 456888887652 22333211111 111111124555544432211 257999999888 66666543 211
Q ss_pred ccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcc
Q 048754 411 SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLR 489 (625)
Q Consensus 411 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~ 489 (625)
.......-+++++++..... + ..++|.+|+.+.. ...+... +. .........++ .|+..... .+
T Consensus 248 ~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~d~~~~~--~~~Lt~~--~~--~~~~~~~spDG~~i~f~s~~--~g--- 312 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQG--G--NTDIYTMDLRSGT--TTRLTDS--PA--IDTSPSYSPDGSQIVFESDR--SG--- 312 (435)
T ss_pred ccCcEECCCCCEEEEEEecC--C--CceEEEEECCCCc--eEEccCC--CC--ccCceeEcCCCCEEEEEECC--CC---
Confidence 11122223455555443221 1 2578999987655 5666532 11 11112222233 44433211 11
Q ss_pred cccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 490 LRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 490 ~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
..++|++|++ +...+.+... ......... ..+++.+++.....+ ...++.+|+ ....
T Consensus 313 --~~~Iy~~d~~--g~~~~~lt~~-------------~~~~~~~~~-SpdG~~ia~~~~~~~---~~~i~~~d~--~~~~ 369 (435)
T PRK05137 313 --SPQLYVMNAD--GSNPRRISFG-------------GGRYSTPVW-SPRGDLIAFTKQGGG---QFSIGVMKP--DGSG 369 (435)
T ss_pred --CCeEEEEECC--CCCeEEeecC-------------CCcccCeEE-CCCCCEEEEEEcCCC---ceEEEEEEC--CCCc
Confidence 2578999987 3355555421 111112222 224444444332211 247889998 3444
Q ss_pred eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 570 W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...+.. +. . .......++++.+++-...........+|+++++.
T Consensus 370 ~~~lt~-~~----~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 370 ERILTS-GF----L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred eEeccC-CC----C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 444421 11 1 12233444556555544332211124688888754
|
|
| >smart00091 PAS PAS domain | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.61 Score=31.51 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=35.3
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccc
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQ 96 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~ 96 (625)
.++++++++. ++.+..+|+.+.+++|++..++.+.....+.
T Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (67)
T smart00091 10 LPDGIFVLDL---DGRILYANPAAEELLGYSPEELIGKSLLELI 50 (67)
T ss_pred CCceEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHhc
Confidence 6788999998 9999999999999999999898887655553
|
PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press). |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=90.09 E-value=19 Score=34.87 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE-EcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS-LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
.+|+.++.+. .++++|+.+. +-...- .....++ +++. -+++.+|+.++.. +.+.+||..+.
T Consensus 2 ~~~~s~~~d~------~v~~~d~~t~--~~~~~~-~~~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~- 63 (300)
T TIGR03866 2 KAYVSNEKDN------TISVIDTATL--EVTRTF-PVGQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDLATG- 63 (300)
T ss_pred cEEEEecCCC------EEEEEECCCC--ceEEEE-ECCCCCC---ceEECCCCCEEEEEECCC-----CeEEEEECCCC-
Confidence 4666665432 4888888762 322211 1111122 2222 2344677776532 35889998877
Q ss_pred CEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 396 PTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 396 ~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.... ++.. +.+. .....-+++.+|+.++.. ..+.+||+.+... ...++. ....+++....++
T Consensus 64 -~~~~~~~~~--~~~~--~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~-~~~~~~-----~~~~~~~~~~~dg 126 (300)
T TIGR03866 64 -EVIGTLPSG--PDPE--LFALHPNGKILYIANEDD------NLVTVIDIETRKV-LAEIPV-----GVEPEGMAVSPDG 126 (300)
T ss_pred -cEEEeccCC--CCcc--EEEECCCCCEEEEEcCCC------CeEEEEECCCCeE-EeEeeC-----CCCcceEEECCCC
Confidence 4432 3221 1121 122222455566655421 3688899865431 122221 1111334444455
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++++... ...++.+|..
T Consensus 127 ~~l~~~~~~--------~~~~~~~d~~ 145 (300)
T TIGR03866 127 KIVVNTSET--------TNMAHFIDTK 145 (300)
T ss_pred CEEEEEecC--------CCeEEEEeCC
Confidence 666665432 1345567776
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.39 Score=53.03 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.5
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEEeeeccccc------------CC-----cchhhhhhh------hccccccccccccCC
Q 048754 143 NRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL------------NH-----VSYPVFKEN------CNQQYDQSAQYFSGG 199 (625)
Q Consensus 143 ~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~------------e~-----~~~~~~~~~------~~~~~~~~~~~~~~~ 199 (625)
+.....|+.|.+|++++++.+..+....... |. ......+.. +.........++|.+
T Consensus 143 ~~c~aaPI~d~~G~liGvl~l~~~~~~~~~~~l~lv~~~a~~Ie~~l~~~~~~~~~~~~~~~~~~il~~~~~gVl~vD~~ 222 (638)
T PRK11388 143 WAFCATPVFDSKGRLTGTIALACPVEQTSAADLPLTLSIAREVGNLLLTDSLLAESNRHLNQLNALLESMDDGVIAWDEQ 222 (638)
T ss_pred ceEEeeEEEcCCCCEEEEEEEEecccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEECCC
Confidence 3567899999999999998876644321110 00 000000111 112223334455888
Q ss_pred CCCCcccccccccccCc-hhHHHHhhhcccC
Q 048754 200 HSPLSQHQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
+.++++|+++++++|++ ++++|..+.++++
T Consensus 223 G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~ 253 (638)
T PRK11388 223 GNLQFLNAQAARLLRLDATASQGRAITELLT 253 (638)
T ss_pred CeEehhhHHHHHHhCcCHHHHCCCcHHHHhc
Confidence 88889999999999998 7788776666654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=29 Score=36.06 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=94.3
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
.++|++|+.++ .=..+... + .........-+++++++.-... + ..++|++|+++.. ++++... +.
T Consensus 213 ~~Iyv~dl~tg--~~~~lt~~--~-g~~~~~~~SPDG~~la~~~~~~--g--~~~Iy~~dl~~g~--~~~LT~~--~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTG--KKEKIASS--Q-GMLVVSDVSKDGSKLLLTMAPK--G--QPDIYLYDTNTKT--LTQITNY--PG-- 277 (419)
T ss_pred CEEEEEECCCC--cEEEEecC--C-CcEEeeEECCCCCEEEEEEccC--C--CcEEEEEECCCCc--EEEcccC--CC--
Confidence 38999999887 55565432 1 1111122233565665543321 1 2589999987765 8888642 11
Q ss_pred CcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
......... +++|+...... + ..++|++|++ +...+++...+ ... ..+.- +++.
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~--g-----~~~Iy~~dl~--~g~~~rlt~~g--------------~~~-~~~SP-DG~~ 332 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRL--G-----YPNIFMKKLN--SGSVEQVVFHG--------------KNN-SSVST-YKNY 332 (419)
T ss_pred ccCccEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEeCccCC--------------CcC-ceECC-CCCE
Confidence 112222333 33666654331 1 3689999998 44555554321 011 22222 4443
Q ss_pred EEEecCCC-CCC--CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 543 IIFGGSIA-GLH--SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 543 ~v~GG~~~-~~~--~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+++-.... ... ...+++.+|+ ++..+..+...+ . .......+|++.++|-...+. ...++.++++.
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~--~~g~~~~LT~~~-----~-~~~p~~SPDG~~I~f~~~~~~---~~~L~~~~l~g 401 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLIST--NSDYIRRLTANG-----V-NQFPRFSSDGGSIMFIKYLGN---QSALGIIRLNY 401 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEEC--CCCCeEECCCCC-----C-cCCeEECCCCCEEEEEEccCC---cEEEEEEecCC
Confidence 33333221 111 2368999999 677887775421 1 122334445555555433322 24677776644
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=33 Score=36.01 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=74.7
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ .-..+... +.. .......-+++.+++..... + ..++|.+|+.+.. .+.+.... .
T Consensus 242 ~~L~~~dl~tg--~~~~lt~~--~g~-~~~~~wSPDG~~La~~~~~~--g--~~~Iy~~dl~tg~--~~~lt~~~---~- 306 (448)
T PRK04792 242 AEIFVQDIYTQ--VREKVTSF--PGI-NGAPRFSPDGKKLALVLSKD--G--QPEIYVVDIATKA--LTRITRHR---A- 306 (448)
T ss_pred cEEEEEECCCC--CeEEecCC--CCC-cCCeeECCCCCEEEEEEeCC--C--CeEEEEEECCCCC--eEECccCC---C-
Confidence 57999999887 55555532 211 11122223555565543221 1 2479999987655 77766421 1
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
.........++ .|++..... + ..++|.+|+. +.+++.+...+ ......++ ..+++.
T Consensus 307 ~~~~p~wSpDG~~I~f~s~~~--g-----~~~Iy~~dl~--~g~~~~Lt~~g-------------~~~~~~~~-SpDG~~ 363 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTSERG--G-----KPQIYRVNLA--SGKVSRLTFEG-------------EQNLGGSI-TPDGRS 363 (448)
T ss_pred CccceEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCEEEEecCC-------------CCCcCeeE-CCCCCE
Confidence 11122232233 455443211 1 2589999988 45677764220 01111222 335544
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+++.+... ....++.+|+ .+.....+.
T Consensus 364 l~~~~~~~---g~~~I~~~dl--~~g~~~~lt 390 (448)
T PRK04792 364 MIMVNRTN---GKFNIARQDL--ETGAMQVLT 390 (448)
T ss_pred EEEEEecC---CceEEEEEEC--CCCCeEEcc
Confidence 44433322 1347999999 566666554
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=88.25 E-value=24 Score=33.53 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=95.1
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCC---CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAK---QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~---~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.+++|++.|..+. .++.|..... .......-. .|.+-.|...++++| .+|..-. .++.+..||+
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~--Lp~~~~GtG~vVYng-slYY~~~------~s~~IvkydL 96 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYK--LPYPWQGTGHVVYNG-SLYYNKY------NSRNIVKYDL 96 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEE--EeceeccCCeEEECC-cEEEEec------CCceEEEEEC
Confidence 4579999887554 4555543221 001111111 144445555556644 5555322 3468999999
Q ss_pred CCCCCc-eEEcCCCCC----CCCCCcceEE--EECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCCceeEeeeccc
Q 048754 445 TTDKPM-WREIPTSWS----PPSRLGHSLS--VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEPQWKQLECNAF 515 (625)
Q Consensus 445 ~~~~~~-W~~~~~~~~----p~~r~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~ 515 (625)
.+.... +..++.... |....+++-+ +++.+-|+++=....+.. .--+-.+|+++ -..+|..-
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g----~ivvskld~~tL~v~~tw~T~----- 167 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG----NIVVSKLDPETLSVEQTWNTS----- 167 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC----cEEEEeeCcccCceEEEEEec-----
Confidence 998877 777764321 1122222222 234445665544332221 01233455542 01245421
Q ss_pred cCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC--C
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG--G 593 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~ 593 (625)
.+.+..+.+-++ -|.||++-..+... ..-.+.||+. +++=..+.. ..+.+-..++++-.+ +
T Consensus 168 ---------~~k~~~~naFmv--CGvLY~~~s~~~~~--~~I~yafDt~--t~~~~~~~i--~f~~~~~~~~~l~YNP~d 230 (250)
T PF02191_consen 168 ---------YPKRSAGNAFMV--CGVLYATDSYDTRD--TEIFYAFDTY--TGKEEDVSI--PFPNPYGNISMLSYNPRD 230 (250)
T ss_pred ---------cCchhhcceeeE--eeEEEEEEECCCCC--cEEEEEEECC--CCceeceee--eeccccCceEeeeECCCC
Confidence 233334443333 47899886654322 3345789984 444444432 233333355666665 5
Q ss_pred cEEEEEc
Q 048754 594 TRVLVLG 600 (625)
Q Consensus 594 ~~i~i~G 600 (625)
++||++-
T Consensus 231 k~LY~wd 237 (250)
T PF02191_consen 231 KKLYAWD 237 (250)
T ss_pred CeEEEEE
Confidence 7888763
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.17 Score=56.19 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=54.8
Q ss_pred EeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccccccCCCCCCcccccccccc
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQDICGIL 213 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 213 (625)
.+.+|+..|+.....++.. ....+..+...|+++.++..... ..+.+.+.........++|.+..++++|+++++++
T Consensus 68 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~gI~i~D~~g~I~~~N~a~~~l~ 144 (663)
T PRK10060 68 LTLDGEPLSVHLVGRKINK--REWAGTASAWHDTPSVARDLSHG-LSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYT 144 (663)
T ss_pred EEeCCcEEEEEEeeeccCc--ccccchhhHHHHHHHHHHHHHHH-HHHHHHHHhhCCceEEEEeCCCCEEEEcHHHHHHH
Confidence 4458998888876665532 23344444445555532211100 01111122222333334577788889999999999
Q ss_pred cCc-hhHHHHhhhcccCc
Q 048754 214 QLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 214 g~~-~e~~~~~~~~~~~~ 230 (625)
||+ ++++|.++..++.+
T Consensus 145 Gy~~~eliG~~~~~l~~~ 162 (663)
T PRK10060 145 GLKEHDVIGQSVFKLFMS 162 (663)
T ss_pred CcCHHHHcCCCHHHHhCC
Confidence 999 88998887776543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=87.75 E-value=25 Score=33.25 Aligned_cols=203 Identities=12% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+.--. ...++++++.+ ..-..+..+. . .+++.. .++.+|+.... ...++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~--~~~~~~~~~~----~--~G~~~~~~~g~l~v~~~~-------~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDT--GEVEVIDLPG----P--NGMAFDRPDGRLYVADSG-------GIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTT--TEEEEEESSS----E--EEEEEECTTSEEEEEETT-------CEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCC--CeEEEEecCC----C--ceEEEEccCCEEEEEEcC-------ceEEEecCC
Confidence 4566666322 23488999887 3333332121 2 233333 46788888652 356679988
Q ss_pred CCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCCcee--ceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 394 KQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAGVLL--SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 394 ~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
+ +++.+... ..+..+.+..+ +-.++.+|+---........ ..+++++++ .+ .+.+... ...+ .+.
T Consensus 70 g--~~~~~~~~~~~~~~~~~~ND~~-vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-~~~p---NGi 139 (246)
T PF08450_consen 70 G--KVTVLADLPDGGVPFNRPNDVA-VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-LGFP---NGI 139 (246)
T ss_dssp T--EEEEEEEEETTCSCTEEEEEEE-E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-ESSE---EEE
T ss_pred C--cEEEEeeccCCCcccCCCceEE-EcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-cccc---cce
Confidence 8 88766542 11233343333 33455687752111111111 578999975 23 4444321 2112 345
Q ss_pred EEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC-ccceEEEEecCCEEEEEe
Q 048754 469 SVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP-RLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 469 ~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~G 546 (625)
+...++ .||+.--. ...++.|+++.....+....... ..+.. ...-.+++-.+++|||..
T Consensus 140 ~~s~dg~~lyv~ds~---------~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF---------NGRIWRFDLDADGGELSNRRVFI---------DFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEETTSSEEEEEETT---------TTEEEEEEEETTTCCEEEEEEEE---------E-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred EECCcchheeecccc---------cceeEEEeccccccceeeeeeEE---------EcCCCCcCCCcceEcCCCCEEEEE
Confidence 555444 67774221 36799999874333343222110 01111 122344444478999974
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
- ....|++||+ +-..-..+.
T Consensus 202 ~------~~~~I~~~~p--~G~~~~~i~ 221 (246)
T PF08450_consen 202 W------GGGRIVVFDP--DGKLLREIE 221 (246)
T ss_dssp E------TTTEEEEEET--TSCEEEEEE
T ss_pred c------CCCEEEEECC--CccEEEEEc
Confidence 3 2458999999 433444553
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.22 Score=40.16 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=38.3
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHH
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCR 241 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~ 241 (625)
..++|.+..++++|+++++++|.+ ++++|..+.+++++.....+....+
T Consensus 8 i~v~D~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 57 (110)
T PF08448_consen 8 IFVIDPDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALR 57 (110)
T ss_dssp EEEEETTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHH
T ss_pred eEEECCCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHH
Confidence 345588888889999999999999 8999999999888876665544333
|
The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=40 Score=34.56 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=64.8
Q ss_pred ccCeeEEeeecCCCCCCCcccceEE---ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC--CCccceeE
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACA---AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP--PGRWGHTL 363 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p--~~r~~~~~ 363 (625)
....|++...+-.+ ...-..+.. ..+.-++.|-+ -.++.......+|.+...+... .....+..
T Consensus 73 ~G~~W~q~~~p~~~--~~~L~~V~F~~~d~~~GwAVG~~---------G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~ 141 (398)
T PLN00033 73 QSSEWEQVDLPIDP--GVVLLDIAFVPDDPTHGFLLGTR---------QTLLETKDGGKTWVPRSIPSAEDEDFNYRFNS 141 (398)
T ss_pred CCCccEEeecCCCC--CCceEEEEeccCCCCEEEEEcCC---------CEEEEEcCCCCCceECccCcccccccccceee
Confidence 34579988632211 122233333 13477887764 2355554445689986422211 11122223
Q ss_pred EEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEE
Q 048754 364 SSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 364 ~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
..+.++..|++|-.+ .+|-....-.+|+.++... .|.. .+....+.++..++.|.. + .++.-
T Consensus 142 v~f~~~~g~~vG~~G--------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~---G----~v~~S 204 (398)
T PLN00033 142 ISFKGKEGWIIGKPA--------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE---G----AIYVT 204 (398)
T ss_pred eEEECCEEEEEcCce--------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc---c----eEEEE
Confidence 333456788886421 3333322223899886421 1222 233334545567777632 1 23433
Q ss_pred ecCCCCCceEEc
Q 048754 443 DLTTDKPMWREI 454 (625)
Q Consensus 443 d~~~~~~~W~~~ 454 (625)
+ .....|+.+
T Consensus 205 ~--D~G~tW~~~ 214 (398)
T PLN00033 205 S--NAGRNWKAA 214 (398)
T ss_pred C--CCCCCceEc
Confidence 3 334459887
|
|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.24 Score=38.47 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCcccccccccccCc-hhHHHHh----hhcccCchhhhhHHhHHHHH
Q 048754 202 PLSQHQDICGILQLS-DEVLAHN----ILSRLTPRDVASIGSVCRRI 243 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~-~e~~~~~----~~~~~~~~~~~~~~~~~~~~ 243 (625)
++|+|+.+++++|++ +++ +.. +...+||+|...+....+..
T Consensus 1 ~i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~ 46 (91)
T PF08447_consen 1 IIYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQA 46 (91)
T ss_dssp -EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHH
T ss_pred CEEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHH
Confidence 358999999999999 555 444 88899999999886665553
|
The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=86.43 E-value=33 Score=33.18 Aligned_cols=101 Identities=17% Similarity=0.150 Sum_probs=50.4
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 449 (625)
.+|+.++.+ +.+.++|+.+++. -..+... ..++. ....-+++.+|+.++. .+.+.+||+.+..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~-~~~~~~~--~~~~~--l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~- 64 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEV-TRTFPVG--QRPRG--ITLSKDGKLLYVCASD------SDTIQVIDLATGE- 64 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCce-EEEEECC--CCCCc--eEECCCCCEEEEEECC------CCeEEEEECCCCc-
Confidence 466666643 3688899887621 1222221 11221 2222244457776652 1468889976644
Q ss_pred ceEE-cCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 450 MWRE-IPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 450 ~W~~-~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
... ++. ...+ ...+... ++.+|+.++. ...+.+||+.+
T Consensus 65 -~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~---------~~~l~~~d~~~ 104 (300)
T TIGR03866 65 -VIGTLPS--GPDP---ELFALHPNGKILYIANED---------DNLVTVIDIET 104 (300)
T ss_pred -EEEeccC--CCCc---cEEEECCCCCEEEEEcCC---------CCeEEEEECCC
Confidence 332 221 1111 2233333 3356666542 25688899873
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long | Back alignment and domain information |
|---|
Probab=85.71 E-value=7.3 Score=33.11 Aligned_cols=87 Identities=25% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEeecCcceeEEE
Q 048754 66 DFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRL 145 (625)
Q Consensus 66 ~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 145 (625)
+.++..+-...++++|+ |+-|+...+++. |.........+..++....+..........+|....++.
T Consensus 50 ~~r~RLaGt~i~~~~G~---d~tG~~~~el~~---------~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~~~e~ 117 (137)
T PF07310_consen 50 DFRYRLAGTRIVELFGR---DLTGRRLSELFP---------PEDRERVRRAYRAVVERPAPVRARGRAEDADGRYLEYER 117 (137)
T ss_pred ceEEEEecHHHHHHhCC---CCCCCCHHHhcC---------hHhHHHHHHHHHHHHcCCceEEEEEEEecCCCCeeEEEE
Confidence 44566788889999998 456888877754 223444556666777777777777777778888888888
Q ss_pred EEEEeeCCCCCEEEEEEEE
Q 048754 146 RLAPIRDDDGTVTHIIGIQ 164 (625)
Q Consensus 146 ~~~~~~d~~g~~~~~i~~~ 164 (625)
.+-|+.+++|.+..++|+.
T Consensus 118 l~LPL~~~~~~v~rilG~~ 136 (137)
T PF07310_consen 118 LLLPLRSDGGTVDRILGAL 136 (137)
T ss_pred EEcccCCCCCCccEEEEec
Confidence 9999999999999888864
|
|
| >KOG3559 consensus Transcriptional regulator SIM1 [Transcription] | Back alignment and domain information |
|---|
Probab=85.50 E-value=5.4 Score=39.22 Aligned_cols=46 Identities=4% Similarity=0.042 Sum_probs=36.7
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..|...+|+..++.+++||+ .+++++.+...++..|...++....-
T Consensus 232 slDlkliF~D~rv~qltgYepqdliektLY~~ih~~D~~~lr~~H~~ 278 (598)
T KOG3559|consen 232 SLDLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIHGCDSFHLRCAHHL 278 (598)
T ss_pred ecceEEEeehhhHHHhhCCCchhhhhHHHHHHhhhhhHHHHHHHHHH
Confidence 44566778889999999999 89998999999998887766554443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.82 E-value=49 Score=33.80 Aligned_cols=173 Identities=21% Similarity=0.287 Sum_probs=89.5
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
..++.++++|+-+.- +-.+|+.+. -.++...+ .---|.+.... . +..|++-||+++ .+-.||+
T Consensus 120 ~~d~t~l~s~sDd~v------~k~~d~s~a---~v~~~l~~htDYVR~g~~~~-~-~~hivvtGsYDg-----~vrl~Dt 183 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDKV------VKYWDLSTA---YVQAELSGHTDYVRCGDISP-A-NDHIVVTGSYDG-----KVRLWDT 183 (487)
T ss_pred ccCCeEEEecCCCce------EEEEEcCCc---EEEEEecCCcceeEeecccc-C-CCeEEEecCCCc-----eEEEEEe
Confidence 357888998885332 344555552 22322222 22224332222 2 457999999876 4777887
Q ss_pred CCCCCEEE-EcCCCCCCCCCccceEEEEcC-CEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc---
Q 048754 392 DAKQPTWI-EVSGGAPPLPRSWHSSCIIEG-SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH--- 466 (625)
Q Consensus 392 ~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~--- 466 (625)
.+.+ .|. .+.-+. |. -..+.+.+ ..|.-.|| +.+-++|+.++. .++.....|
T Consensus 184 R~~~-~~v~elnhg~-pV----e~vl~lpsgs~iasAgG--------n~vkVWDl~~G~---------qll~~~~~H~Kt 240 (487)
T KOG0310|consen 184 RSLT-SRVVELNHGC-PV----ESVLALPSGSLIASAGG--------NSVKVWDLTTGG---------QLLTSMFNHNKT 240 (487)
T ss_pred ccCC-ceeEEecCCC-ce----eeEEEcCCCCEEEEcCC--------CeEEEEEecCCc---------eehhhhhcccce
Confidence 7663 333 333221 21 13344544 33444455 466777765433 122222212
Q ss_pred --eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEE
Q 048754 467 --SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIII 544 (625)
Q Consensus 467 --~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v 544 (625)
|+....++.-++.||.+ ..+-+||+. .|.-+.... .|.|-. ++.+..++.-++
T Consensus 241 VTcL~l~s~~~rLlS~sLD---------~~VKVfd~t----~~Kvv~s~~----------~~~pvL--siavs~dd~t~v 295 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLD---------RHVKVFDTT----NYKVVHSWK----------YPGPVL--SIAVSPDDQTVV 295 (487)
T ss_pred EEEEEeecCCceEeecccc---------cceEEEEcc----ceEEEEeee----------ccccee--eEEecCCCceEE
Confidence 23333444666777765 577789865 677666652 233322 333344778888
Q ss_pred EecCC
Q 048754 545 FGGSI 549 (625)
Q Consensus 545 ~GG~~ 549 (625)
+|..+
T Consensus 296 iGmsn 300 (487)
T KOG0310|consen 296 IGMSN 300 (487)
T ss_pred Eeccc
Confidence 88764
|
|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
Probab=84.38 E-value=0.51 Score=38.05 Aligned_cols=61 Identities=7% Similarity=0.095 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCcccccccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLT 247 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (625)
..+..+..++|.+..+.++|+++.+++++....+|.++.++.++.....+....+.+....
T Consensus 6 ~s~~~~i~~vD~~~~I~~~n~~a~~~f~~~~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~ 66 (106)
T PF13596_consen 6 DSMPIGIIFVDRNLRIRYFNPAAARLFNLSPSDIGRPLFDIHPPLSYPNLKKIIEQVRSGK 66 (106)
T ss_dssp HHSSSEEEEEETTSBEEEE-SCGC-SS---GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTS
T ss_pred hcCCCCEEEEcCCCeEEEeChhHhhhcCCChHHCCCCHHHcCCccchHHHHHHHHHHHcCC
Confidence 3344555566888888899999999999998888999999988877777766665544433
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=84.37 E-value=40 Score=32.43 Aligned_cols=232 Identities=13% Similarity=0.168 Sum_probs=105.8
Q ss_pred CCceEEcccC-CCC--CCccceeEEEE-cCCEEEEEc--cCCCCCccc-cE-EEEECCCCCCEEEEcCCCC----CCCCC
Q 048754 343 NPEWRRVSVK-SSP--PGRWGHTLSSL-NGSWLVVFG--GCGRQGLLN-DV-FVLDLDAKQPTWIEVSGGA----PPLPR 410 (625)
Q Consensus 343 ~~~W~~~~~~-~~p--~~r~~~~~~~~-~~~~iyv~G--G~~~~~~~~-~~-~~~d~~t~~~~W~~~~~~~----~p~~r 410 (625)
..+|.....- ..+ ..+.+..+.+. .+++|+++- +........ .+ +....+. -.+|+...... .....
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~-G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDG-GKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESST-TSS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCC-CCCCCCccccccccccceec
Confidence 4679875321 222 23333333332 466787775 222211111 11 2333332 23798654210 01111
Q ss_pred ccce-EEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE-EEECCcEEEEEcCCcCCCCc
Q 048754 411 SWHS-SCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL-SVYGRTKVLMFGGLAKSGHL 488 (625)
Q Consensus 411 ~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~ 488 (625)
..+. .+.+.++.+++. .+............+.- ....+|+...... ......+.+ +...++.|+++--.. ..
T Consensus 108 ~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~-D~G~tW~~~~~~~-~~~~~~e~~~~~~~dG~l~~~~R~~-~~-- 181 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSD-DGGKTWSSGSPIP-DGQGECEPSIVELPDGRLLAVFRTE-GN-- 181 (275)
T ss_dssp CSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEES-STTSSEEEEEECE-CSEEEEEEEEEEETTSEEEEEEEEC-SS--
T ss_pred cceeeeeEecCCCEEEE-EeeccccCcceEEEEeC-CCCceeecccccc-ccCCcceeEEEECCCCcEEEEEEcc-CC--
Confidence 1111 234446677776 21111112223333443 3445698875411 111222333 334666888874332 11
Q ss_pred ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC
Q 048754 489 RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP 568 (625)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 568 (625)
..++..-..+...+|+..... ..|.+.....++...++.++++...... ..+-...+... +..
T Consensus 182 ----~~~~~~~S~D~G~TWs~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~--r~~l~l~~S~D-~g~ 244 (275)
T PF13088_consen 182 ----DDIYISRSTDGGRTWSPPQPT----------NLPNPNSSISLVRLSDGRLLLVYNNPDG--RSNLSLYVSED-GGK 244 (275)
T ss_dssp ----TEEEEEEESSTTSS-EEEEEE----------ECSSCCEEEEEEECTTSEEEEEEECSST--SEEEEEEEECT-TCE
T ss_pred ----CcEEEEEECCCCCcCCCceec----------ccCcccCCceEEEcCCCCEEEEEECCCC--CCceEEEEEeC-CCC
Confidence 244444444446799987644 2355556666666667888888772111 12222223332 478
Q ss_pred CeEEEcCCCCCCCCCC-cceEEEECCcEEEE
Q 048754 569 SWRILNVPGQPPKFAW-GHSTCVVGGTRVLV 598 (625)
Q Consensus 569 ~W~~v~~~~~~p~~r~-~~~~~~~~~~~i~i 598 (625)
+|.........+...+ +.+++...++.|+|
T Consensus 245 tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 245 TWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 9987653222222233 44455556678876
|
... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=83.63 E-value=54 Score=33.34 Aligned_cols=218 Identities=15% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+++||+-.... .+++||..+-...|+.-... . ++. .+.+++.+..+|+.. ..+.++.+|..+.
T Consensus 111 ~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~--~-~~~-~~~~v~~~~~v~~~s------~~g~~~al~~~tG 173 (370)
T COG1520 111 DGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG--S-PYY-ASPPVVGDGTVYVGT------DDGHLYALNADTG 173 (370)
T ss_pred CCeEEEecccc-------eEEEEECCCCcEEEEEecCC--C-eEE-ecCcEEcCcEEEEec------CCCeEEEEEccCC
Confidence 66766655432 58999996656789865322 2 232 222334344555543 1246899999988
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc-eEEEECC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH-SLSVYGR 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~-~~~~~~~ 473 (625)
+..|..-.... ...+...+.. ...+.+|+-.. . ....++.+|+.+.+..|..-.. .+..+..- ....+..
T Consensus 174 ~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~-~----~~~~~~a~~~~~G~~~w~~~~~--~~~~~~~~~~~~~~~~ 244 (370)
T COG1520 174 TLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSD-G----YDGILYALNAEDGTLKWSQKVS--QTIGRTAISTTPAVDG 244 (370)
T ss_pred cEEEEEecCCc-cccccccCce-eecceEEEecC-C----CcceEEEEEccCCcEeeeeeee--cccCcccccccccccC
Confidence 88998443221 1222222222 43546666321 1 1226899999999999985221 11111100 1122223
Q ss_pred cEEEEEcCC-cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 474 TKVLMFGGL-AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 474 ~~l~v~GG~-~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
..+|+-|+. .... ...++.+|..+.+..|+.-.... ....+...+.....++++|+........
T Consensus 245 ~~v~v~~~~~~~~~-----~g~~~~l~~~~G~~~W~~~~~~~----------~~~~~~~~~~~~~~dG~v~~~~~~~~~~ 309 (370)
T COG1520 245 GPVYVDGGVYAGSY-----GGKLLCLDADTGELIWSFPAGGS----------VQGSGLYTTPVAGADGKVYIGFTDNDGR 309 (370)
T ss_pred ceEEECCcEEEEec-----CCeEEEEEcCCCceEEEEecccE----------eccCCeeEEeecCCCccEEEEEeccccc
Confidence 355555442 1111 24588888887777898765310 1112222222222367787775432221
Q ss_pred CCCCcEEEEeCCCCCC--CeEEEc
Q 048754 553 HSPSQLFLLDPSEEKP--SWRILN 574 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~--~W~~v~ 574 (625)
....+++++...... .|....
T Consensus 310 -~~~~~~~~~~~~g~~~~~w~~~~ 332 (370)
T COG1520 310 -GSGSLYALADVPGGTLLKWSYPV 332 (370)
T ss_pred -cccceEEEeccCCCeeEEEEEeC
Confidence 345677777522333 676553
|
|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
Probab=82.78 E-value=0.76 Score=37.45 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=38.7
Q ss_pred cCCCCCCccccc-ccccccCc-hhHHHHhhhcccCchhhhh-HHhHHHHHHH
Q 048754 197 SGGHSPLSQHQD-ICGILQLS-DEVLAHNILSRLTPRDVAS-IGSVCRRIRQ 245 (625)
Q Consensus 197 ~~~~~~~~~n~~-~~~~~g~~-~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 245 (625)
+.+..++++-+. +..++||. +|++|..+.+++||+|+.. +....+.+..
T Consensus 9 s~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~ 60 (111)
T PF14598_consen 9 SLDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQ 60 (111)
T ss_dssp ETTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhh
Confidence 456677788888 68999997 9999999999999999996 7655555443
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=70 Score=33.58 Aligned_cols=187 Identities=12% Similarity=0.166 Sum_probs=88.1
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
....+++.|.+.. .-..+... +. ........-++++++... ... + ...+|++|+.+.. -+.+.. .+.
T Consensus 196 ~~~~l~i~d~dG~--~~~~l~~~--~~-~~~~p~wSPDG~~La~~s-~~~-g--~~~L~~~dl~tg~--~~~lt~--~~g 262 (448)
T PRK04792 196 YPYQLMIADYDGY--NEQMLLRS--PE-PLMSPAWSPDGRKLAYVS-FEN-R--KAEIFVQDIYTQV--REKVTS--FPG 262 (448)
T ss_pred CceEEEEEeCCCC--CceEeecC--CC-cccCceECCCCCEEEEEE-ecC-C--CcEEEEEECCCCC--eEEecC--CCC
Confidence 3457888887655 33344332 11 111112222444444332 111 1 2479999987655 555543 111
Q ss_pred CCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 462 SRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 462 ~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
........ +++.|++....+ + ..++|++|++ +.+.+.+.... ......+.. .++
T Consensus 263 --~~~~~~wSPDG~~La~~~~~~--g-----~~~Iy~~dl~--tg~~~~lt~~~-------------~~~~~p~wS-pDG 317 (448)
T PRK04792 263 --INGAPRFSPDGKKLALVLSKD--G-----QPEIYVVDIA--TKALTRITRHR-------------AIDTEPSWH-PDG 317 (448)
T ss_pred --CcCCeeECCCCCEEEEEEeCC--C-----CeEEEEEECC--CCCeEECccCC-------------CCccceEEC-CCC
Confidence 11122233 233565543221 1 2589999998 44565554320 001112222 244
Q ss_pred E-EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 541 R-IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 541 ~-l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
+ |+..... . ...++|.+|+ ++.++..+...+. ...+....++++.+++.+.... ..++|++++.+
T Consensus 318 ~~I~f~s~~-~---g~~~Iy~~dl--~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~ 383 (448)
T PRK04792 318 KSLIFTSER-G---GKPQIYRVNL--ASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTNG---KFNIARQDLET 383 (448)
T ss_pred CEEEEEECC-C---CCceEEEEEC--CCCCEEEEecCCC-----CCcCeeECCCCCEEEEEEecCC---ceEEEEEECCC
Confidence 4 4443221 1 2368999999 5778888753221 1122334445455555443322 24688888765
Q ss_pred C
Q 048754 620 K 620 (625)
Q Consensus 620 ~ 620 (625)
.
T Consensus 384 g 384 (448)
T PRK04792 384 G 384 (448)
T ss_pred C
Confidence 4
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.84 E-value=1.2 Score=42.38 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=43.0
Q ss_pred ccccccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhh
Q 048754 205 QHQDICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKM 255 (625)
Q Consensus 205 ~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (625)
.|+... ...+|+|++ ..||..++..+++.+..+|+||+.+.++..+|..
T Consensus 92 ~npgv~-~~slpDEil-l~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 92 NNPGVS-WDSLPDEIL-LGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cCCCCC-cccCCHHHH-HHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 455555 778899998 9999999999999999999999999999999864
|
|
| >KOG3559 consensus Transcriptional regulator SIM1 [Transcription] | Back alignment and domain information |
|---|
Probab=81.46 E-value=3 Score=40.85 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=54.3
Q ss_pred eEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEEEEEEE
Q 048754 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQGELLNF 134 (625)
Q Consensus 56 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~ 134 (625)
-+++... |-.+++......+++||++.+++++.+..+.+ . .+....+.....+. .|..-+-=+++.
T Consensus 227 Fmfrasl---DlkliF~D~rv~qltgYepqdliektLY~~ih---------~-~D~~~lr~~H~~ll~kGqvtTkYYR~l 293 (598)
T KOG3559|consen 227 FMFRASL---DLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIH---------G-CDSFHLRCAHHLLLVKGQVTTKYYRFL 293 (598)
T ss_pred EEEEeec---ceEEEeehhhHHHhhCCCchhhhhHHHHHHhh---------h-hhHHHHHHHHHHHHhccccccHHHHHH
Confidence 3455556 78899999999999999999999998765532 1 12223333333333 333222234566
Q ss_pred eecCcceeEEEEEEEeeCC
Q 048754 135 KKDGTPLVNRLRLAPIRDD 153 (625)
Q Consensus 135 ~~dG~~~~~~~~~~~~~d~ 153 (625)
.+.|...|+......+.+.
T Consensus 294 ~k~ggwvwvqsyat~vHnS 312 (598)
T KOG3559|consen 294 LKQGGWVWVQSYATFVHNS 312 (598)
T ss_pred HcCCceEEEEEeeEEEecc
Confidence 7788888887766655443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=75 Score=33.18 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=86.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+|++|+.++ ....+... +.. .......-+++++++..... + ..+++++|+.+.. ...+... . .
T Consensus 228 ~~l~~~dl~~g--~~~~l~~~--~g~-~~~~~~SpDG~~l~~~~s~~-g---~~~Iy~~d~~~g~--~~~lt~~--~-~- 292 (433)
T PRK04922 228 SAIYVQDLATG--QRELVASF--RGI-NGAPSFSPDGRRLALTLSRD-G---NPEIYVMDLGSRQ--LTRLTNH--F-G- 292 (433)
T ss_pred cEEEEEECCCC--CEEEeccC--CCC-ccCceECCCCCEEEEEEeCC-C---CceEEEEECCCCC--eEECccC--C-C-
Confidence 56999999887 66666543 211 11122223455565543211 1 1479999987655 5555432 1 1
Q ss_pred CcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-E
Q 048754 464 LGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-R 541 (625)
Q Consensus 464 ~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~ 541 (625)
.........++ .|+...... + ..++|.+|+. +.+.+.+... ...........++ .
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~--g-----~~~iy~~dl~--~g~~~~lt~~--------------g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRG--G-----RPQIYRVAAS--GGSAERLTFQ--------------GNYNARASVSPDGKK 349 (433)
T ss_pred CccceEECCCCCEEEEEECCC--C-----CceEEEEECC--CCCeEEeecC--------------CCCccCEEECCCCCE
Confidence 11122333333 444432221 1 2578999987 4456665422 1111112222244 4
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
|++..+ ..+ ...++++|+ .+.....+.. +.. ........+++.+++...... ...+|.++++
T Consensus 350 Ia~~~~-~~~---~~~I~v~d~--~~g~~~~Lt~-~~~-----~~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~ 411 (433)
T PRK04922 350 IAMVHG-SGG---QYRIAVMDL--STGSVRTLTP-GSL-----DESPSFAPNGSMVLYATREGG---RGVLAAVSTD 411 (433)
T ss_pred EEEEEC-CCC---ceeEEEEEC--CCCCeEECCC-CCC-----CCCceECCCCCEEEEEEecCC---ceEEEEEECC
Confidence 444433 211 237999998 5666665542 111 112233445566666544322 2456666653
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=80.97 E-value=49 Score=30.98 Aligned_cols=266 Identities=14% Similarity=0.178 Sum_probs=100.9
Q ss_pred EEECCEEEE--EcccCCCCCCCCCeEEEeccCCCCceEEccc-CC----CCCC-ccceeEEEEcCCEEEEEccC--CCCC
Q 048754 312 CAAGNRLVL--FGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KS----SPPG-RWGHTLSSLNGSWLVVFGGC--GRQG 381 (625)
Q Consensus 312 ~~~~~~lyv--~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~----~p~~-r~~~~~~~~~~~~iyv~GG~--~~~~ 381 (625)
.+.++-||. ++|....-..+.-.|+-..+.. .+|+..+- .+ -|.- --++++.++ ++++|..=-. -...
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG-~TWttPEwLtd~H~~yptvnyHCmSMGv~-~NRLfa~iEtR~~a~~ 99 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDG-QTWTTPEWLTDLHPDYPTVNYHCMSMGVV-GNRLFAVIETRTVASN 99 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTT-SS----EESS---TTTTTEEEE-B-EEEE-TTEEEEEEEEEETTT-
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCC-CcccCchhhhhcCCCCCccceeeeeeeee-cceeeEEEeehhhhhh
Confidence 345565552 3443333233333455555443 67875431 11 1221 123455545 6788776322 1222
Q ss_pred ccccEEEEE---CCCCCCEEEEcCCCCCCC-------CCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec----CCC
Q 048754 382 LLNDVFVLD---LDAKQPTWIEVSGGAPPL-------PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL----TTD 447 (625)
Q Consensus 382 ~~~~~~~~d---~~t~~~~W~~~~~~~~p~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~----~~~ 447 (625)
.+.....|+ ...+ .|+...-+..|. .-.-|+.|.++++ -|.+|=. .+......+-.+-. .+.
T Consensus 100 km~~~~Lw~RpMF~~s--pW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~-~fA~GyH-nGD~sPRe~G~~yfs~~~~sp 175 (367)
T PF12217_consen 100 KMVRAELWSRPMFHDS--PWRITELGTIASFTSAGVAVTELHSFATIDDN-QFAVGYH-NGDVSPRELGFLYFSDAFASP 175 (367)
T ss_dssp -EEEEEEEEEE-STTS----EEEEEES-TT--------SEEEEEEE-SSS--EEEEEE-E-SSSS-EEEEEEETTTTT-T
T ss_pred hhhhhhhhcccccccC--CceeeecccccccccccceeeeeeeeeEecCC-ceeEEec-cCCCCcceeeEEEecccccCC
Confidence 344455555 2344 787433222232 4456888888664 4566532 22211222222211 111
Q ss_pred CCce-EEcCCCCCCCCCCcceEEEECCcEEEEEc-CCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 448 KPMW-REIPTSWSPPSRLGHSLSVYGRTKVLMFG-GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 448 ~~~W-~~~~~~~~p~~r~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
...- ..++.. ....-...+.-.+++ .||+.- |...... -..+.+-+.. ...|..+...
T Consensus 176 ~~~vrr~i~se-y~~~AsEPCvkyY~g-~LyLtTRgt~~~~~----GS~L~rs~d~--G~~w~slrfp------------ 235 (367)
T PF12217_consen 176 GVFVRRIIPSE-YERNASEPCVKYYDG-VLYLTTRGTLPTNP----GSSLHRSDDN--GQNWSSLRFP------------ 235 (367)
T ss_dssp T--EEEE--GG-G-TTEEEEEEEEETT-EEEEEEEES-TTS-------EEEEESST--TSS-EEEE-T------------
T ss_pred cceeeeechhh-hccccccchhhhhCC-EEEEEEcCcCCCCC----cceeeeeccc--CCchhhcccc------------
Confidence 1111 122211 111111122333444 998875 3332222 1445555555 5689988643
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCC---------C---CCCcEEEE--eCC---CCCCCeEEEcC---CCCCCCCCCc
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGL---------H---SPSQLFLL--DPS---EEKPSWRILNV---PGQPPKFAWG 585 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~---------~---~~~~v~~~--d~~---~~~~~W~~v~~---~~~~p~~r~~ 585 (625)
..-....--+...++.|||||-....+ . ..+..+.. ++. -++-+|..+.. .|..-..-.+
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavG 315 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVG 315 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SE
T ss_pred ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccccccccc
Confidence 111111122334499999998643110 1 12333322 221 13556666652 1223333445
Q ss_pred ceEEEECCcEEE-EEcCcC
Q 048754 586 HSTCVVGGTRVL-VLGGHT 603 (625)
Q Consensus 586 ~~~~~~~~~~i~-i~GG~~ 603 (625)
-+.+++.|+.|| +|||.+
T Consensus 316 VGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 316 VGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEEEEEETTEEEEEEEEB-
T ss_pred ceeEEEECCEEEEEecCcc
Confidence 666777777776 799976
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 625 | ||||
| 2z6d_A | 130 | Crystal Structure Of Lov1 Domain Of Phototropin2 Fr | 1e-21 | ||
| 2z6c_A | 129 | Crystal Structure Of Lov1 Domain Of Phototropin1 Fr | 7e-20 | ||
| 1n9l_A | 109 | Crystal Structure Of The Phot-lov1 Domain From Chla | 2e-18 | ||
| 3hjk_A | 154 | 2.0 Angstrom Structure Of The Ile74val Variant Of V | 2e-18 | ||
| 3rh8_B | 148 | Crystal Structure Of The Light-State Dimer Of Funga | 3e-18 | ||
| 3is2_A | 154 | 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic | 3e-18 | ||
| 2pd8_A | 149 | 1.8 Angstrom Crystal Structure Of The Cys71ser Muta | 3e-18 | ||
| 3is2_B | 154 | 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic | 3e-18 | ||
| 3hji_A | 154 | 1.8 Angstrom Crystal Structure Of The I74v:i85v Var | 4e-18 | ||
| 3d72_A | 149 | 1.65 Angstrom Crystal Structure Of The Cys71val Var | 5e-18 | ||
| 2pd7_A | 149 | 2.0 Angstrom Crystal Structure Of The Fungal Blue-L | 6e-18 | ||
| 3ulf_A | 170 | The Light State Structure Of The Blue-light Photore | 9e-18 | ||
| 3ue6_A | 166 | The Dark Structure Of The Blue-light Photoreceptor | 1e-17 | ||
| 3p7n_A | 258 | Crystal Structure Of Light Activated Transcription | 1e-15 | ||
| 2v1a_A | 144 | N- And C-Terminal Helices Of Oat Lov2 (404-546) Are | 5e-15 | ||
| 2v0u_A | 146 | N- And C-terminal Helices Of Oat Lov2 (404-546) Are | 5e-15 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 4e-14 | ||
| 4eep_A | 115 | Crystal Structure Of Lov2 Domain Of Arabidopsis Tha | 1e-13 | ||
| 3t50_A | 128 | X-Ray Structure Of The Lov Domain From The Lov-Hk S | 2e-13 | ||
| 4eeu_A | 118 | Crystal Structure Of Philov2.1 Length = 118 | 2e-13 | ||
| 2pr5_A | 132 | Structural Basis For Light-dependent Signaling In T | 2e-13 | ||
| 4eer_A | 115 | Crystal Structure Of Lov2 Domain Of Arabidopsis Tha | 3e-13 | ||
| 4ees_A | 115 | Crystal Structure Of Ilov Length = 115 | 3e-13 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 4e-13 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 5e-13 | ||
| 3sw1_A | 162 | Structure Of A Full-Length Bacterial Lov Protein Le | 7e-13 | ||
| 1g28_A | 104 | Structure Of A Flavin-Binding Domain, Lov2, From Th | 2e-12 | ||
| 4hia_A | 176 | Crystal Structure Of Rhodobacter Sphaeroides Lov Pr | 5e-08 | ||
| 4hj3_A | 176 | Crystal Structure Of Rhodobacter Sphaeroides Lov Pr | 6e-08 | ||
| 4hj6_A | 178 | Crystal Structure Of Rhodobacter Sphaeroides Lov Pr | 6e-08 | ||
| 4hj4_A | 177 | Crystal Structure Of Rhodobacter Sphaeroides Lov Pr | 6e-08 | ||
| 2gj3_A | 120 | Crystal Structure Of The Fad-Containing Pas Domain | 5e-04 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 8e-04 |
| >pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From Arabidopsis Thaliana Length = 130 | Back alignment and structure |
|
| >pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From Arabidopsis Thaliana Length = 129 | Back alignment and structure |
|
| >pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From Chlamydomonas Reinhardtii In The Dark State. Length = 109 | Back alignment and structure |
|
| >pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid (Vvd). Length = 154 | Back alignment and structure |
|
| >pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal Blue-Light Photoreceptor Vivid Length = 148 | Back alignment and structure |
|
| >pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid Form Of Vivid Length = 154 | Back alignment and structure |
|
| >pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of Vivid Length = 149 | Back alignment and structure |
|
| >pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid Form Of Vivid Length = 154 | Back alignment and structure |
|
| >pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of Vivid (Vvd). Length = 154 | Back alignment and structure |
|
| >pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In The Fungal Photoreceptor Vvd Length = 149 | Back alignment and structure |
|
| >pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light Photoreceptor Vivid Length = 149 | Back alignment and structure |
|
| >pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor Aureochrome1 Lov Length = 170 | Back alignment and structure |
|
| >pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor Aureochrome1 Lov Length = 166 | Back alignment and structure |
|
| >pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor El222 From Erythrobacter Litoralis Length = 258 | Back alignment and structure |
|
| >pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-Induced Signal Transduction (Room Temperature (293k) Dark Structure Of Lov2 (404-546)) Length = 144 | Back alignment and structure |
|
| >pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are Involved In Light-induced Signal Transduction (cryo Dark Structure Of Lov2 (404-546)) Length = 146 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana Phototropin 2 Length = 115 | Back alignment and structure |
|
| >pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory Protein From Brucella Abortus (Dark State). Length = 128 | Back alignment and structure |
|
| >pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1 Length = 118 | Back alignment and structure |
|
| >pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The Dimeric Lov Photosensor Ytva (dark Structure) Length = 132 | Back alignment and structure |
|
| >pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana Phototropin 2 C426a Mutant Length = 115 | Back alignment and structure |
|
| >pdb|4EES|A Chain A, Crystal Structure Of Ilov Length = 115 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein Length = 162 | Back alignment and structure |
|
| >pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3 Length = 104 | Back alignment and structure |
|
| >pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 176 | Back alignment and structure |
|
| >pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 176 | Back alignment and structure |
|
| >pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 178 | Back alignment and structure |
|
| >pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein Length = 177 | Back alignment and structure |
|
| >pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of The Protein Nifl From Azotobacter Vinelandii. Length = 120 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 5e-57
Identities = 52/325 (16%), Positives = 112/325 (34%), Gaps = 39/325 (12%)
Query: 292 CWRKFTVRGAVEPSRCNFSACA-AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVS 350
+ + P F AGN + GG N +++ L++ + + +
Sbjct: 373 VDEDYQLLECECPINRKFGDVDVAGNDVFYMGGS--NPYRVNEILQLSIHYDKIDMKNIE 430
Query: 351 VKSS--PPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP 406
V SS P R HT +++ N L++ G L+D ++ D+ + W + +
Sbjct: 431 VSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMI--KSL 486
Query: 407 PLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS-PPSRLG 465
R HS+C + +++ GG T+ +L L ++T + ++++ + L
Sbjct: 487 SHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEI--FKDVTPKDEFFQNSLV 540
Query: 466 HSLSVY---GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522
+ + + +++ GG + + D +
Sbjct: 541 SAGLEFDPVSKQGIILGGGFMDQTTV-SDKAIIFKYDAENATEPITV------IKKLQHP 593
Query: 523 AVVPPPRLDHVAVSMPCGRIIIFGG-SIAGLHSPSQ-LFLLDPSEEKPSWRILNVPGQ-- 578
R + +++I GG S +GL + + LDP E + + +
Sbjct: 594 ---LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET--LTSIPISRRIW 648
Query: 579 --PPKFAWGHSTCVVGGTRVLVLGG 601
G S + ++GG
Sbjct: 649 EDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 5e-40
Identities = 51/305 (16%), Positives = 103/305 (33%), Gaps = 34/305 (11%)
Query: 327 NMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV 386
+ D + ++ E ++ P R + G+ + GG +N++
Sbjct: 357 TQGFLFDRSISEINLTVDEDYQLLECECPINRKFGD-VDVAGNDVFYMGG-SNPYRVNEI 414
Query: 387 FVLDLDAKQPTW--IEVSGGAPPLPRSWHS-SCIIEGSKLVVSGGCTDAGVLLSDTYLLD 443
L + + IEVS P+ R H+ + I ++L++ GG LSD ++ D
Sbjct: 415 LQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474
Query: 444 LTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDE 503
+ T + W I + +R HS VL+ GG+ + + ++ +E
Sbjct: 475 MKTRE--WSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGPAM-------LLYNVTEE 523
Query: 504 EPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC---GRIIIFGGSIAGLH--SPSQL 558
+K + L + II+ GG + + +
Sbjct: 524 I--FKDVTP---------KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572
Query: 559 FLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWV--LNELHELC 616
F D ++ P +G + ++L++GG + N + L
Sbjct: 573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632
Query: 617 LASKQ 621
S+
Sbjct: 633 PLSET 637
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 2e-28
Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 23/208 (11%)
Query: 288 LEAVCWRKFTVRGAVEPSRCNFSACAAGN-RLVLFGGEGVNMQPMDDTFVLNLDAANPEW 346
++ W ++ +R SAC+ + +++ GG + +L + +
Sbjct: 475 MKTREWSMI---KSLSHTRFRHSACSLPDGNVLILGGVT------EGPAMLLYNVTEEIF 525
Query: 347 RRVSVKSS-PPGRWGHTLSSLNGSW---LVVFGGCGRQGLLND---VFVLDLDAKQPTWI 399
+ V+ K + +++ GG Q ++D +F D +
Sbjct: 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPIT 585
Query: 400 EV-SGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW 458
+ P R I KL++ GG + +G+ ++ L IP S
Sbjct: 586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISR 645
Query: 459 S-----PPSRLGHSLSVYGRTKVLMFGG 481
G SL + + GG
Sbjct: 646 RIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 4e-24
Identities = 43/309 (13%), Positives = 96/309 (31%), Gaps = 34/309 (11%)
Query: 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFG 375
R G VN+ M + D A + + +
Sbjct: 294 QRFNKLGFAYVNVGDMF-QLWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYK 352
Query: 376 GCGRQGLLNDVFVLD-LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV 434
+ ++ ++ P+ R + + G+ + GG
Sbjct: 353 EFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVA-GNDVFYMGGSNPYR- 410
Query: 435 LLSDTYLLDLTTDKPMWREIPTSWS--PPSRLGHSLSVYGR-TKVLMFGGLAKSGHLRLR 491
+++ L + DK + I S S P +R+ H+ + R ++L+ GG + H L
Sbjct: 411 -VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK-APHQGLS 468
Query: 492 SGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551
+ + +W ++ + R H A S+P G ++I GG
Sbjct: 469 DNWIFDMKTR----EWSMIK------------SLSHTRFRHSACSLPDGNVLILGGV--- 509
Query: 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG---TRVLVLGGHTGEEWV 608
+ L + +EE ++ + + + + + +++ GG + V
Sbjct: 510 -TEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTV 566
Query: 609 LNELHELCL 617
++
Sbjct: 567 SDKAIIFKY 575
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-09
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 6/92 (6%)
Query: 293 WRKFTVRGAVEPSRCNFSACA-AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV 351
R +L++ GG + +++LD + + +
Sbjct: 584 ITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI 643
Query: 352 KSS-----PPGRWGHTLSSLNGSWLVVFGGCG 378
G +L S + + + GG
Sbjct: 644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675
|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* Length = 149 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 5e-52
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQR--RHPLVD 110
T + ++ D D PI+Y ++ F TGY EVLGRNCRFLQ D + VD
Sbjct: 34 TSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVD 93
Query: 111 PVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
++ +R+ ++ E Q E++NFKK+G VN L + P+RD+ G + +G Q
Sbjct: 94 SNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQC 148
|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} Length = 258 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 7e-51
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
+P + VV+D D P+I +N+ F TGY +E +GRNCRFL +P
Sbjct: 71 ASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAG---------SGTEP 121
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171
+ +IR+ + E E+LN+KKDGTP N + +API DDD + + +G Q+ +
Sbjct: 122 WLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQ 181
Query: 172 DLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQDICGILQLSD-EVLAH--NILSRL 228
++ + + + +++++ L LS+ V H ++ +L
Sbjct: 182 PNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKL 241
Query: 229 TPRDVASIGSVCRR 242
+ A + +
Sbjct: 242 NLKTSADLVRIAVE 255
|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* Length = 109 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-49
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112
+FVVADA PD P++Y ++ F TGY DEVLG NCRFLQ DP
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQ---------GEGTDPK 52
Query: 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V +IR +++G LLN++KDGTP N L + PI+ DG V+ +G+Q+
Sbjct: 53 EVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQV 105
|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* Length = 115 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 6e-49
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112
+FV+ D PD PII+ + F T Y +E+LGRN RFLQ P D
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQ---------GPETDQA 56
Query: 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V +IR + + E +L+N+ K G N L L P+RD G + + IG+Q+
Sbjct: 57 TVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQL 109
|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* Length = 130 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 9e-49
Identities = 50/114 (43%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T +FVV+DA P PI+Y + F TGY + E++GRNCRFLQ P D
Sbjct: 14 TLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQ---------GPDTDK 64
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V++IR C++ G + G LLN+KKDGTP N L + PI+DD G IG+Q+
Sbjct: 65 NEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQV 118
|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* Length = 166 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-48
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
+FV+ DA PD PI+Y ++ F TGY D++LGRNCRFLQ P DP
Sbjct: 43 MAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQ---------GPETDP 93
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V +IR + +G++ LLN+++DGT N +A +RD G + + +G+Q
Sbjct: 94 RAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQS 147
|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* Length = 146 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 4e-48
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112
+FV+ D PD PII+ + F T Y +E+LGRNCRFLQ P D
Sbjct: 11 IEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQ---------GPETDRA 61
Query: 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQI 165
V +IR ++ E +L+N+ K G N L P+RD G V + IG+Q+
Sbjct: 62 TVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQL 114
|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} Length = 128 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-47
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
T ++ + PD PI++ N F TGY ADEV+GRNCRFLQ DP
Sbjct: 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQG---------HGTDP 55
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
V I+ + +++N+KK G NRL ++P+ + +G + H + Q
Sbjct: 56 AHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQ 108
|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 Length = 110 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-45
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGR--NCRFLQYRDPRAQRRHPLVDPVV 113
F++A+A + +IY N F GY EV+ R C FL P
Sbjct: 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH---------GPCTQRRA 53
Query: 114 VSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
++I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 54 AAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNF 104
|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* Length = 132 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-44
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112
V+ D D PI+YVN+ F TGY +E+LG+NCRFLQ DP
Sbjct: 8 VRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQG---------KHTDPA 58
Query: 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
V IR L+ ++ N+KKDGT N L + P+ +D T+ +GIQ
Sbjct: 59 EVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDK--TYFVGIQ 108
|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A Length = 138 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-44
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGR--NCRFLQYRDPRAQRRHPLV 109
F++A+A + +IY N F GY EV+ R C FL P
Sbjct: 27 GQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH---------GPRT 77
Query: 110 DPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
++I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 78 QRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNF 132
|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} Length = 162 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-44
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112
+ VVA+ D +IYVN FE TGY DE+L ++CRFLQ D +
Sbjct: 34 SNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQ---------GDDRDQL 84
Query: 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+ IR+ + EG + L N++KDG+ N L + P++ D T+ IGIQ
Sbjct: 85 GRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQ 136
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-27
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
+FV+ D PD PII+ + F T Y +E+LGRN RFLQ + D
Sbjct: 19 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPE---------TDR 69
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171
V +IR ++ E +L+N+ K G N L P+RD G V + IG+Q+ +
Sbjct: 70 ATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHV 129
Query: 172 DLNHVSYPVF 181
V
Sbjct: 130 RDAAEREGVM 139
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 51/308 (16%), Positives = 96/308 (31%), Gaps = 47/308 (15%)
Query: 304 PSRCNFSACAAGNRLVLFGGEGVN----MQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359
R ++ L +FGG G N Q +D + W ++ +P G
Sbjct: 54 GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY--NPKTNSWVKLMS-HAPMGMA 110
Query: 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQP----------------------- 396
GH NG V GG + L+ K
Sbjct: 111 GHVTFVHNGK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF 169
Query: 397 ---------TWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447
W G P + ++ + +G K + G G+ + LD T +
Sbjct: 170 LLSFDPSTQQWSYA--GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGN 227
Query: 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQW 507
W ++ SP G + + + G K ++G++Y + +
Sbjct: 228 NLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKK---S 284
Query: 508 KQLECNAF-TGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE 566
+ + + G +S + R V++ ++I GG AG + + L+ +
Sbjct: 285 YSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN-NSLLIIGGETAGGKAVTDSVLITVKDN 343
Query: 567 KPSWRILN 574
K + + L
Sbjct: 344 KVTVQNLE 351
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 1e-22
Identities = 47/274 (17%), Positives = 85/274 (31%), Gaps = 39/274 (14%)
Query: 353 SSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSW 412
+P T + N + + + G + LD AK W ++ P PR
Sbjct: 5 ETPVPFKSGTGAIDNDT-VYIGLGSAG----TAWYKLDTQAKDKKWTALAA-FPGGPRDQ 58
Query: 413 HSSCIIEGSKLVVSGGCTDAG----VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468
+S I+G L V GG + +D + + T+ W ++ + +P GH
Sbjct: 59 ATSAFIDG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS--WVKLMSH-APMGMAGHVT 114
Query: 469 SVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG--------- 519
V+ K + GG+ + ++ E + G + ++ + F
Sbjct: 115 FVHNG-KAYVTGGV--NQNIFNGYFEDLN-EAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170
Query: 520 ----------SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569
S + P AV + + G +F LD +
Sbjct: 171 LSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK 230
Query: 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHT 603
W L P P G + ++ GG
Sbjct: 231 WNKLA-PVSSPDGVAGGFAGISND-SLIFAGGAG 262
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 54/368 (14%), Positives = 116/368 (31%), Gaps = 81/368 (22%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-RWGHTLS 364
+ + + + + G + L+ A + +W ++ + P G R T +
Sbjct: 10 FKSGTGAIDNDTVYIGLGSAGT-----AWYKLDTQAKDKKWTALA--AFPGGPRDQATSA 62
Query: 365 SLNGSWLVVFGGCGRQG-----LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE 419
++G+ L VFGG G+ + NDV + +W+++ P+ + H + +
Sbjct: 63 FIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTN--SWVKL-MSHAPMGMAGHVTFVHN 118
Query: 420 GSKLVVSGGC---------------------------------TDAGVLLSDTYLLDLTT 446
G K V+GG + D +T
Sbjct: 119 G-KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177
Query: 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ 506
+ W S G ++ G K + G AK G LR+ + +D +
Sbjct: 178 QQ--WSYAGES-PWYGTAGAAVVNKGD-KTWLINGEAKPG---LRTDAVFELDFTGNNLK 230
Query: 507 WKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA----GLHSPSQLFLLD 562
W +L + V P + + +I GG+ + + + +
Sbjct: 231 WNKL-----------APVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279
Query: 563 PSEEKPSWRILN-------VPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHEL 615
++ S I G+ + + +L++GG T + + +
Sbjct: 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNN-SLLIIGGETAGGKAVTDSVLI 338
Query: 616 CLASKQDS 623
+ + +
Sbjct: 339 TVKDNKVT 346
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 17/170 (10%)
Query: 303 EPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362
+ G++ L GE D F L+ N +W +++ SSP G G
Sbjct: 188 WYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247
Query: 363 LSSLNGSWLVV----FGGCGRQGLLNDVFVLD----------LDAKQPTWIEVSGGAPPL 408
N S + F G + + W + G
Sbjct: 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS--GELSQ 305
Query: 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW 458
R++ S L++ GG T G ++D+ L+ + +K + +
Sbjct: 306 GRAYGVSLPWNN-SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH 354
|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 4e-22
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D I+Y N F + Y +E++G++ R + + ++ R +
Sbjct: 5 TDLQGRILYANDNFCAVSRYGREELVGQDHRIV---------NSGYHGKAYIRDMWRTIS 55
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
G +QGE N +KDGT + P+ D+ G I I+
Sbjct: 56 RGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIR 97
|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 5e-19
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D IIY N F+G E+LG++ L PL D ++ ++ L+
Sbjct: 127 TDRAGRIIYANPALCRFSGMAEGELLGQSPSIL---------DSPLADQETLAAMQEALQ 177
Query: 123 EGIEFQGELLNFKKDGTPLVN------RLRLAPIRDDDGTVTHIIGIQ 164
G + G LLN ++ G + + PI D + + IQ
Sbjct: 178 AGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQ 225
|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Length = 124 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 5e-22
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
D II NK E GY ++ +G+ L P + SE+ +E
Sbjct: 24 DLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLH---------VPGDTEHITSEVISAVEN 74
Query: 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
++ GE+ KDG PI ++ + +GI
Sbjct: 75 QGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGI 114
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 4e-19
Identities = 55/314 (17%), Positives = 97/314 (30%), Gaps = 52/314 (16%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDT---FVLNLDAANPEWRRVSVKSSPPGRWGHT 362
+ + S N++ + GG N +D + L D + EW + P R
Sbjct: 36 KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP--PLPSPRCLFG 93
Query: 363 LSSLNGSWLVVFGGCGRQG---LLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCII 418
L S + V GG + L+ V D + W E P P H+
Sbjct: 94 LGEALNS-IYVVGGREIKDGERCLDSVMCYDRLSF--KWGES---DPLPYVVYGHTVLSH 147
Query: 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLM 478
+ V GG L+ + D + W+E+ + R +V+ ++++
Sbjct: 148 MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTA--RSLFGATVHDG-RIIV 201
Query: 479 FGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP 538
G+ + S E Y+I +W P R VS+
Sbjct: 202 AAGV--TDTGLTSSAEVYSITDN----KWAPF------------EAFPQERSSLSLVSL- 242
Query: 539 CGRIIIFGG--SIAGLHSPSQLFLLDPSE----EKPSWRILNVPGQPPKFAWGHSTCVVG 592
G + GG ++ L+ E+ W + + A+ +
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFLP 297
Query: 593 GTRVLVLGGHTGEE 606
R+ VL E
Sbjct: 298 V-RLNVLRLTKMAE 310
|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} Length = 120 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-18
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
D I+Y N+ F TGY ++EVLG+N L +V + L +
Sbjct: 22 DLKANILYANRAFRTITGYGSEEVLGKNESILSN------GTT---PRLVYQALWGRLAQ 72
Query: 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+ G L+N +KD T + L +AP+ ++ G + +G+
Sbjct: 73 KKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMH 113
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 54/311 (17%), Positives = 103/311 (33%), Gaps = 55/311 (17%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDT---FVLNLDAANPEWRRVSVKSSPPGRWGHT 362
R + S N++ + GG V+ + D + LD + EW + P R
Sbjct: 47 RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP--PLPSARCLFG 104
Query: 363 LSSLNGSWLVVFGGCGRQGL--LNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIE 419
L ++ + V G Q L+ V D A W EV P+ H+
Sbjct: 105 LGEVDDK-IYVVAGKDLQTEASLDSVLCYDPVAA--KWSEV---KNLPIKVYGHNVISHN 158
Query: 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMF 479
G + GG TD + ++ + W+++ +P R ++++ K+++
Sbjct: 159 G-MIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTP--RSMFGVAIHKG-KIVIA 212
Query: 480 GGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539
GG+ + S E++ + +W+ + P R VS+
Sbjct: 213 GGV--TEDGLSASVEAFDLKTN----KWEVM------------TEFPQERSSISLVSL-A 253
Query: 540 GRIIIFGGSIAGLHSPSQLFLLDPS-------EEKPSW-RILNVPGQPPKFAWGHSTCVV 591
G + GG A + S+ F ++K W +L + +
Sbjct: 254 GSLYAIGG-FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI------RYASGASCL 306
Query: 592 GGT-RVLVLGG 601
+ L
Sbjct: 307 ATRLNLFKLSK 317
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 61/308 (19%), Positives = 91/308 (29%), Gaps = 49/308 (15%)
Query: 304 PSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTL 363
+ A L++ GG G P+D D EW + S R
Sbjct: 3 QGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKY--DPKTQEWS--FLPSITRKRRYVAS 58
Query: 364 SSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ-PTWIEVSGGAP-PLPRSWHSSCIIEGS 421
SL+ + V GG + L+ V LD A + W V AP + R + +
Sbjct: 59 VSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSV---APMNVRRGLAGATTLGD- 113
Query: 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGG 481
+ VSGG D + D D+ W + R G L V + GG
Sbjct: 114 MIYVSGGF-DGSRRHTSMERYDPNIDQ--WSMLG-DMQTA-REGAGLVVASG-VIYCLGG 167
Query: 482 LAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541
G L S E Y G W + + R +
Sbjct: 168 Y--DGLNILNSVEKYDPHTG----HWTNV------------TPMATKRSGAGVALLN-DH 208
Query: 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI---LNVPGQPPKFAWGHSTCVVGGTRVLV 598
I + GG G S + + + W + P V+ G R+
Sbjct: 209 IYVVGGF-DGTAHLSSVEAYNIRTDS--WTTVTSMTTP------RCYVGATVLRG-RLYA 258
Query: 599 LGGHTGEE 606
+ G+ G
Sbjct: 259 IAGYDGNS 266
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLN----LDAANPEWRRVSVKSSPPGRWGH 361
R + + + GG D T L+ + W V+ S R
Sbjct: 197 RSGAGVALLNDHIYVVGGF-------DGTAHLSSVEAYNIRTDSWTTVT--SMTTPRCYV 247
Query: 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII 418
+ L G L G LL+ + D +W V + R C++
Sbjct: 248 GATVLRG-RLYAIAGYDGNSLLSSIECYDPIID--SWEVV--TSMGTQRCDAGVCVL 299
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 51/307 (16%), Positives = 89/307 (28%), Gaps = 53/307 (17%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365
R +L++ G G + + D W +V+ P R +
Sbjct: 5 RTRLRTPMNLPKLMVVVG-GQAPKAIRSVECY--DFKEERWHQVA--ELPSRRCRAGMVY 59
Query: 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL--PRSWHSSCIIEGSKL 423
+ G + GG + V D W V + RS + ++ G L
Sbjct: 60 MAGL-VFAVGGFNGSLRVRTVDSYDPVKD--QWTSV----ANMRDRRSTLGAAVLNG-LL 111
Query: 424 VVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS-PPSRLGHSLSVYGRTKVLMFGGL 482
GG + L S ++ +++ W + R + V G + GG
Sbjct: 112 YAVGGFDGSTGL-SSVEAYNIKSNE--WFHVA---PMNTRRSSVGVGVVGG-LLYAVGGY 164
Query: 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542
+ L + E Y +W + A + R + +
Sbjct: 165 DVASRQCLSTVECYNATTN----EWTYI------------AEMSTRRSGAGVGVL-NNLL 207
Query: 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRI---LNVPGQPPKFAWGHSTCVVGGTRVLVL 599
GG G + + DP+ WR +N+ C V G + V+
Sbjct: 208 YAVGGH-DGPLVRKSVEVYDPTTNA--WRQVADMNMCR------RNAGVCAVNG-LLYVV 257
Query: 600 GGHTGEE 606
GG G
Sbjct: 258 GGDDGSC 264
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 56/292 (19%), Positives = 90/292 (30%), Gaps = 47/292 (16%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365
RC + GG + D +W V+ + R +
Sbjct: 52 RCRAGMVYMAGLVFAVGGFN-GSLRVRTVDS--YDPVKDQWTSVA--NMRDRRSTLGAAV 106
Query: 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKLV 424
LNG L GG L+ V ++ + W V AP RS ++ G L
Sbjct: 107 LNGL-LYAVGGFDGSTGLSSVEAYNIKSN--EWFHV---APMNTRRSSVGVGVVGG-LLY 159
Query: 425 VSGGCTDAGVLLSDT---YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGG 481
GG A T Y + TT++ W I R G + V + GG
Sbjct: 160 AVGGYDVASRQCLSTVECY--NATTNE--WTYIAE--MSTRRSGAGVGVLNN-LLYAVGG 212
Query: 482 LAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541
G L +S E Y W+Q+ A + R + ++ G
Sbjct: 213 --HDGPLVRKSVEVYDPTTN----AWRQV------------ADMNMCRRNAGVCAV-NGL 253
Query: 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593
+ + GG G + + + +P+ +K W + V V+
Sbjct: 254 LYVVGGD-DGSCNLASVEYYNPTTDK--WTV--VSSCMSTGRSYAGVTVIDK 300
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 7e-16
Identities = 45/247 (18%), Positives = 69/247 (27%), Gaps = 42/247 (17%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLN----LDAANPEWRRVSVKSSPPGRWGH 361
R + C G L GG D + + +W + R
Sbjct: 61 RSGLAGCVVGGLLYAVGGRN---NSPDGNTDSSALDCYNPMTNQWSPCA--PMSVPRNRI 115
Query: 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEG 420
+ ++G + GG N V + + W V AP R ++
Sbjct: 116 GVGVIDGH-IYAVGGSHGCIHHNSVERYEPERD--EWHLV---APMLTRRIGVGVAVLNR 169
Query: 421 SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFG 480
L GG D L+ ++ WR I R G + V + G
Sbjct: 170 -LLYAVGGF-DGTNRLNSAECYYPERNE--WRMITA--MNTIRSGAGVCVLHN-CIYAAG 222
Query: 481 GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540
G G +L S E Y ++ W + A + R G
Sbjct: 223 GY--DGQDQLNSVERYDVETE----TWTFV------------APMKHRRSALGITVH-QG 263
Query: 541 RIIIFGG 547
RI + GG
Sbjct: 264 RIYVLGG 270
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 54/305 (17%), Positives = 88/305 (28%), Gaps = 56/305 (18%)
Query: 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGS 369
A G + GG Q + + +N W R++ R G + G
Sbjct: 19 HAPKVGRLIYTAGG--YFRQSLSYLEAY--NPSNGTWLRLA--DLQVPRSGLAGCVVGGL 72
Query: 370 WLVVFGGCGRQG----LLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKLV 424
L GG + + + W AP +PR+ +I+G +
Sbjct: 73 -LYAVGGRNNSPDGNTDSSALDCYNPMTN--QWSPC---APMSVPRNRIGVGVIDG-HIY 125
Query: 425 VSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAK 484
GG + + + D+ W + R+G ++V R + GG
Sbjct: 126 AVGGS-HGCIHHNSVERYEPERDE--WHLVAPM--LTRRIGVGVAVLNR-LLYAVGGF-- 177
Query: 485 SGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIII 544
G RL S E Y + +W+ + + R + I
Sbjct: 178 DGTNRLNSAECYYPERN----EWRMI------------TAMNTIRSGAGVCVL-HNCIYA 220
Query: 545 FGGSIAGLHSPSQLFLLDPSEEKPSWRI---LNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601
GG S + D E W + V G R+ VLGG
Sbjct: 221 AGGYDGQDQLNS-VERYDVETET--WTFVAPMKHRRS------ALGITVHQG-RIYVLGG 270
Query: 602 HTGEE 606
+ G
Sbjct: 271 YDGHT 275
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 46/272 (16%)
Query: 341 AANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE 400
++ S P G + L + GG RQ L + + + W+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHAPKVGRL----IYTAGGYFRQSL-SYLEAYNPSNGT--WLR 53
Query: 401 VSGGAPPLPRSWHSSCIIEGSKLVVSGGC---TDAGVLLSDTYLLDLTTDKPMWREIPTS 457
++ +PRS + C++ G L GG D S + T++ W
Sbjct: 54 LA--DLQVPRSGLAGCVVGG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPM 108
Query: 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTG 517
P R + V + GG G + S E Y + +W +
Sbjct: 109 SVP--RNRIGVGVIDG-HIYAVGGS--HGCIHHNSVERYEPERD----EWHLV------- 152
Query: 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPS-QLFLLDPSEEKPSWRILNVP 576
A + R+ + + GG S + + P + WR++
Sbjct: 153 -----APMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECY--YPERNE--WRMI--- 199
Query: 577 GQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWV 608
+ V + GG+ G++ +
Sbjct: 200 -TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 230
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 49/301 (16%), Positives = 91/301 (30%), Gaps = 53/301 (17%)
Query: 306 RCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS 365
R + + N + + GG + P+ + W +P R +
Sbjct: 46 RRDAACVFWDNVVYILGGS--QLFPIKRMDC--YNVVKDSWYSKLGPPTP--RDSLAACA 99
Query: 366 LNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAP-PLPRSWHSSCIIEGSKL 423
G + GG L D + +W R H G +
Sbjct: 100 AEGK-IYTSGGSEVGNSALYLFECYDTRTE--SWHTK---PSMLTQRCSHGMVEANG-LI 152
Query: 424 VVSGGCTD---AGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFG 480
V GG +G +L+ + D T+ W E+ R H L K+ G
Sbjct: 153 YVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEA--RKNHGLVFVKD-KIFAVG 207
Query: 481 GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540
G ++G L + E Y I L +WK + + +P + ++
Sbjct: 208 G--QNGLGGLDNVEYYDIKLN----EWKMV------------SPMPWKGVTVKCAAV-GS 248
Query: 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600
+ + G G+ + + +K W A+ ++C++ V+
Sbjct: 249 IVYVLAGF-QGVGRLGHILEYNTETDK--WVAN-----SKVRAFPVTSCLIC---VVDTC 297
Query: 601 G 601
G
Sbjct: 298 G 298
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 53/306 (17%), Positives = 83/306 (27%), Gaps = 65/306 (21%)
Query: 312 CAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWL 371
R+ LFGG + + W + R + +
Sbjct: 9 KKHDYRIALFGGSQPQS-------CRYFNPKDYSWTDIR--CPFEKRRDAACVFWDN-VV 58
Query: 372 VVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL--PRSWHSSCIIEGSKLVVSGGC 429
+ GG + + ++ +W PR ++C EG K+ SGG
Sbjct: 59 YILGGSQLFPI-KRMDCYNVVKD--SWYSK----LGPPTPRDSLAACAAEG-KIYTSGGS 110
Query: 430 TDAGVLLSDTYLLDLTTDKPMWREIPTSWS-PPSRLGHSLSVYGRTKVLMFGGLAKSGHL 488
L D T+ W P S R H + + + GG +
Sbjct: 111 EVGNSALYLFECYDTRTES--WHTKP---SMLTQRCSHGMVEANG-LIYVCGGSLGNNVS 164
Query: 489 --RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP---PRLDHVAVSMPCGRII 543
L S E Y W + + P R +H V + +I
Sbjct: 165 GRVLNSCEVYDPATE----TWTE---------------LCPMIEARKNHGLVFVK-DKIF 204
Query: 544 IFGGSIAGLHSPSQLFLLDPSEEKPSWRI---LNVPGQPPKFAWGHSTCVVGGTRVLVLG 600
GG GL + D + W++ + G VG V VL
Sbjct: 205 AVGGQ-NGLGGLDNVEYYDIKLNE--WKMVSPMPWKGV------TVKCAAVGS-IVYVLA 254
Query: 601 GHTGEE 606
G G
Sbjct: 255 GFQGVG 260
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 38/194 (19%)
Query: 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMF 479
++ + GG + W +I R + + V +
Sbjct: 12 DYRIALFGGSQ-----PQSCRYFNPKDYS--WTDIRCP--FEKRRDAACVFWDN-VVYIL 61
Query: 480 GGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539
GG S ++ + Y ++ + W P PR A +
Sbjct: 62 GG---SQLFPIKRMDCY--NVVKD--SWYSK------------LGPPTPRDSLAACAA-E 101
Query: 540 GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQP-PKFAWGHSTCVVGGTRVLV 598
G+I GGS G + D E W H G + V
Sbjct: 102 GKIYTSGGSEVGNSALYLFECYDTRTES--WH----TKPSMLTQRCSHGMVEANG-LIYV 154
Query: 599 LGGHTGEEWVLNEL 612
GG G L
Sbjct: 155 CGGSLGNNVSGRVL 168
|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Length = 120 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-13
Identities = 11/102 (10%), Positives = 25/102 (24%), Gaps = 9/102 (8%)
Query: 62 AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121
D I N +++GR+ L Y R + I +
Sbjct: 17 VLSRDRVIEDCNDELAAIFRCARADLIGRSFEVL-YPSSDEFER-------IGERISPVM 68
Query: 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+ + + + G + + D + +
Sbjct: 69 IAHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWT 109
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 1e-11
Identities = 45/334 (13%), Positives = 80/334 (23%), Gaps = 25/334 (7%)
Query: 290 AVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRV 349
W T + + G+ V D D+++ W
Sbjct: 221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG 280
Query: 350 SVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL 408
R + +++ +G + G + V +K TW +
Sbjct: 281 P--DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNP 336
Query: 409 PRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP-MWREIPTSWSPPSRLGHS 467
+ + G V + +R
Sbjct: 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396
Query: 468 LSVYGRT--------KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519
++ G K+L FGG + + ++ I LG+
Sbjct: 397 DAMCGNAVMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGE---------PGTSPNTV 446
Query: 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQP 579
S + R H +V +P G I GG G+ + P P
Sbjct: 447 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 506
Query: 580 PKFAWGHST-CVVGGTRVLVLGGHTGEEWVLNEL 612
HS ++ RV GG + N
Sbjct: 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHF 540
|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Length = 114 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-10
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
FD + + V++ + G ++LG + + + + + + RR L
Sbjct: 19 FDREMRYLAVSRRWREDYGLGDGDILGMSHYDI-FPEIGEEWKS---------VHRRGLA 68
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+ E + DG R + P + +G V ++
Sbjct: 69 GEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIF 109
|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} Length = 125 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 19/103 (18%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
+ I+ VN G D ++G+ + + QR + +E
Sbjct: 35 LTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRL---------EAGKSAVE 85
Query: 123 EG--IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
G + + P+ D +
Sbjct: 86 NGTATRSEDAVGGRHYHNQ-------YIPV-DSHRKSDTFQLV 120
|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} Length = 115 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 9e-08
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D I Y N E+ A ++ ++ + + ++ + + L+
Sbjct: 23 LDDGLAIRYANPAAELLFSQSAKRIVEQSLS-----------QLIQHASLDLALLTQPLQ 71
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTV 157
G + F DG PL+ + ++PI +
Sbjct: 72 SGQSITDSDVTFVVDGRPLMLEVTVSPITWQRQLM 106
|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} Length = 152 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-07
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
+ + D+ I+ VN+ FE + + + G+N + + + +D
Sbjct: 30 QLSFALCI---VRNDYVIVKVNEYFESRVIFDGETMQGKNI-LELFPESADYLKR-KIDT 84
Query: 112 VVVSEIRRCLEEGIEFQGELLNFKK------DGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+V E E + LL FK + + L + PI +DGT+ H+
Sbjct: 85 ALVIESSSFSSW--EQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLC 140
|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} Length = 117 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-07
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 60 ADAF---DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSE 116
D D + + VN GY DE L + L
Sbjct: 21 IDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAA----------A 70
Query: 117 IRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+ G + E + ++G L L + D I+GI
Sbjct: 71 SLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDG-----KILGI 112
|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A Length = 158 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111
P V + PD + VN + F+ + +G+ R + Y + Q+ + +
Sbjct: 25 HIPAILVGLE--GPDHRFVAVNAAYRGFSPLL--DTVGQPAREV-YPELEGQQIYEM--- 76
Query: 112 VVVSEIRRCLEEGIEFQGE--LLNFKKDGTPLVNR---LRLAPIRDDDGTVTHIIGI 163
+ R + G G L DG+ + R + P R DG++ + I
Sbjct: 77 -----LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLI 128
|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} Length = 185 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123
PD + VN + F+ + +G+ R + Y + Q+ + + + R +
Sbjct: 55 GPDHRFVAVNAAYRGFSPLL--DTVGQPAREV-YPELEGQQIYEM--------LDRVYQT 103
Query: 124 GIEFQGE--LLNFKKDGTPLVNR---LRLAPIRDDDGTVTHIIGI 163
G G L DG+ + R + P R DG++ + I
Sbjct: 104 GEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLI 148
|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} Length = 126 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 15/108 (13%)
Query: 59 VADAF---DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ D + + ++Y N GY +E++ + +
Sbjct: 8 IEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTI----------TSAGKMAEGE 57
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+I L G + L KK+GT + + R+ + + + I
Sbjct: 58 KILAELFAGKKESLPLSLEKKEGTSIPAKARIWQGKWHNEPC--LFAI 103
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 76/612 (12%), Positives = 157/612 (25%), Gaps = 196/612 (32%)
Query: 47 LLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRH 106
LL V + ++ + + + + R Y D + ++
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 107 PLVDPVVVSEIRRCLEE-----GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
+ ++R+ L E + G +L K T + L V +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSGK--TWVA----LDVCLSYK--VQCKM 180
Query: 162 GIQIF-------SEAKIDLNHVS--YPVFKENCNQQYDQSAQYFSGGHSP-------LSQ 205
+IF + + L + N + D S+ HS L
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 206 HQDICGILQLSD----EVL-AHNILSR--LTPRDVASIGSVCRRIRQLTKNEHVRKMVCQ 258
+L L + + A N+ + LT R V L+ +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK----QV---TDFLSAATTTHISLDH 293
Query: 259 NAWGREVTGALELMTKKLG--WGRLARELTT----LEAVCWRKFTVRGAVEPSRCNFSAC 312
++ L+ K L L RE+ T ++ + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNW-- 347
Query: 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANP-EWRRV---------SVKSSPPGRWGHT 362
+ VN + +L+ P E+R++ S
Sbjct: 348 -----------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-----IL 391
Query: 363 LSSLNGSWL--------VVFGGCGRQGLLN-----------DVFVLDLDAKQPTWIEVSG 403
LS + W VV + L+ ++ L+L K +
Sbjct: 392 LSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYAL-- 445
Query: 404 GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY----------------------- 440
H S I++ + + D D Y
Sbjct: 446 ---------HRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 441 -LLDLTTDKPMW-----REIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGE 494
LD + R T+W+ + ++L +L+ +
Sbjct: 496 VFLDFR-----FLEQKIRHDSTAWNASGSILNTL-------------------QQLKFYK 531
Query: 495 SYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554
Y D +P++++L + P+++ + ++
Sbjct: 532 PYIC---DNDPKYERLVNAILDFL---------PKIEENLICSKYTDLL----------- 568
Query: 555 PSQLFLLDPSEE 566
++ L+ E
Sbjct: 569 --RIALMAEDEA 578
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 78/570 (13%), Positives = 150/570 (26%), Gaps = 202/570 (35%)
Query: 95 LQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDD 154
QY+D + VD +++ + + + E+ + + LRL
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 155 GTVTHIIGIQIFSEAKIDLNHVSYP----VFKENCNQQYDQSAQYFSGGHSPLSQHQDIC 210
+Q F E + +N Y K Q + Y L
Sbjct: 75 QEEM----VQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ-RDRL------- 119
Query: 211 GILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALE 270
+N +V R++ K +R+ + + + V ++
Sbjct: 120 -----------YNDNQVFAKYNV-------SRLQPYLK---LRQALLELRPAKNVL--ID 156
Query: 271 LMTKKLGWGRLARELTTLEA-VCWRKFTVRGAVEPSR---CNFSACAAGNRLVLFGGEGV 326
+ LG G+ T + VC + V+ + + N C + ++
Sbjct: 157 GV---LGSGK-----TWVALDVC-LSYKVQCKM-DFKIFWLNLKNCNSPETVLE------ 200
Query: 327 NMQ----PMDDTFVLNLD-AANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQG 381
+Q +D + D ++N + R S+++ L L S
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLLKSKP------YENC 246
Query: 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE----GSKLVV---SGGCTDA-- 432
LL VL V ++ K+++ TD
Sbjct: 247 LL----VLL---------NV----------QNAK-AWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 433 ----GVLLSDTYLLDLTTDKPM-----WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLA 483
+ D + + LT D+ + + P L + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-----IIAESI 337
Query: 484 KSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII 543
+ G D WK + C+ T II
Sbjct: 338 RDGLAT--------WD------NWKHVNCDKLT------------------------TII 359
Query: 544 IFGGSIAGLHSPSQLFL--LDPSEEKPSWRIL-------NVPGQPPKFAWGHSTCVVGGT 594
+ L L+P+E + + L ++P W
Sbjct: 360 -------------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--- 403
Query: 595 RVLVLGGHTGEEWVLNELHELCLASKQDSD 624
V+N+LH+ L KQ +
Sbjct: 404 ----------VMVVVNKLHKYSLVEKQPKE 423
|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} Length = 126 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 59 VADAF---DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
D D D I VN+ F GY EVLGR+ + D V
Sbjct: 26 SPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF----------DLMFDAEDVQ 75
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+ E L ++DG+ + + L + + I
Sbjct: 76 TQLSGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNLEGEDR--FLAI 121
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 17/103 (16%)
Query: 62 AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121
D I NK E G + + VLGR + L EI
Sbjct: 23 TLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL----------------PDFEEIGSVA 66
Query: 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDG-TVTHIIGI 163
E E + + +R +P R+ + +I
Sbjct: 67 ESVFENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIIT 109
|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* Length = 167 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 59 VADAF---DPDFPIIYVNKVFE-IFTGYRADEVLGRNCRFLQYRDPRAQRRHP-LVDPVV 113
+ + +++ N E ++ GY+ +EV+G N L + HP +
Sbjct: 49 NMMGAVLINENDEVMFFNPAAEKLW-GYKREEVIGNNIDMLI--PRDLRPAHPEYIRHNR 105
Query: 114 VSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
R E Q E KKDG+ + R L+ + + + + +
Sbjct: 106 EGGKARVEGMSRELQLE----KKDGSKIWTRFALSKVSAEGK--VYYLAL 149
|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 7e-06
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 59 VADA---FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+A ++ +YVN T Y +++L N +D +D
Sbjct: 22 AVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMN-----LQD---------IDVDFAL 67
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
+ + + + + G + + L + D + + +
Sbjct: 68 HDWEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQERRFSCVF 113
|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} Length = 129 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 59 VADA---FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+ +A + + I N+ + G++ + + Q R+ + V
Sbjct: 16 LTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQD--WRNFLTEHHQARYDNLLSHDVQ 73
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHII 161
C + E G L ++ I + ++
Sbjct: 74 LGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGHEPMFVMVM 119
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNE 250
L DE+L I S L ++ + VC+R +L +E
Sbjct: 9 WDSLPDELLLG-IFSCLCLPELLKVSGVCKRWYRLASDE 46
|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* Length = 119 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 9e-05
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 24/115 (20%)
Query: 59 VADAF---DPDFPIIYVNKVFE-IFTGYRADEVLGRNCRFL---QYRDPRAQRRHP-LVD 110
+ DA D I + E +F G+ E +G+N L R RH +
Sbjct: 2 IPDAMIVIDGHGIIQLFSTAAERLF-GWSELEAIGQNVNILMPEPDRS-----RHDSYIS 55
Query: 111 PVVVSEIRRCLEEGIEFQGELLNFKKDGT--PLVNRLRLAPIRDDDGTVTHIIGI 163
+ + G G+ ++DGT P+ L + ++ + G
Sbjct: 56 RYRTTSDPHIIGIGRIVTGK----RRDGTTFPM--HLSIGEMQSGGE--PYFTGF 102
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGAL 269
L DE+L I S L ++ + VC+R +L +E + + +
Sbjct: 7 VSWDSLPDELLLG-IFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTG 65
Query: 270 ELMTKKLGWGRLARELTTL 288
L+++ + R R
Sbjct: 66 RLLSQGVIAFRCPRSFMDQ 84
|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} Length = 118 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 14/97 (14%)
Query: 59 VADAF---DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
F D D IIYVN DE+LGR + +
Sbjct: 21 GGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT---------EVLPETQGSYFDA 71
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRD 152
R+ L G E Q + + G + + A
Sbjct: 72 LCRKVLATGREQQTRVDSLYSPGMTI--EVTAAADSG 106
|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* Length = 96 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 62 AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121
D I NK E G + + VLGR + L + S
Sbjct: 7 TLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF------------EEIGSVAESVF 54
Query: 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
E LNF K G N +R +P R+ + + I
Sbjct: 55 ENKEPVF---LNFYKFGERYFN-IRFSPFRNAKTQLLEGVII 92
|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* Length = 130 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 24/115 (20%)
Query: 59 VADAF---DPDFPIIYVNKVFE-IFTGYRADEVLGRNCRFL---QYRDPRAQRRHP-LVD 110
V DA D I+ N F GY +EV+G+N R L YR H +
Sbjct: 25 VPDATVVSATDGTIVSFNAAAVRQF-GYAEEEVIGQNLRILMPEPYRH-----EHDGYLQ 78
Query: 111 PVVVSEIRRCLEEGIEFQGELLNFKKDGT--PLVNRLRLAPIRDDDGTVTHIIGI 163
+ + +R + G+ +KDG+ P+ +L + +R G
Sbjct: 79 RYMATGEKRIIGIDRVVSGQ----RKDGSTFPM--KLAVGEMRSGGE--RFFTGF 125
|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} Length = 118 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 17/104 (16%)
Query: 64 DPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVD--PVVVSEIRRCL 121
I + F N H D ++ + +
Sbjct: 23 SGQATIRFRPPAFLKTLVSEHAGTTRLNT---------LSMIHH--DDRHMLSNAYSKLR 71
Query: 122 EEGIEFQGE--LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
E ++ +G + DDG + I GI
Sbjct: 72 EAKHSLTLVYRIVT--PEGKLHWIEDHMRSSFSDDGLFSGIDGI 113
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.96 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.78 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 99.64 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 99.63 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 99.58 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 99.57 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 99.54 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 99.52 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 99.51 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 99.49 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.49 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 99.48 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 99.46 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 99.46 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 99.45 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 99.41 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 99.41 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 99.37 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.36 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 99.35 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 99.34 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 99.33 | |
| 3sw1_A | 162 | Sensory box protein; light-oxygen-voltage, LOV, PA | 99.33 | |
| 2z6d_A | 130 | Phototropin-2; PAS-fold, LOV-fold, alternative spl | 99.31 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 99.31 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 99.29 | |
| 3kx0_X | 185 | Uncharacterized protein RV1364C/MT1410; PAS domain | 99.28 | |
| 2v0u_A | 146 | NPH1-1, LOV2; kinase, transferase, ATP-binding, se | 99.26 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 99.26 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 99.26 | |
| 1byw_A | 110 | Protein (human ERG potassium channel); PAS domain, | 99.25 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 99.21 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 99.21 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 99.2 | |
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 99.18 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 99.17 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 99.14 | |
| 2l0w_A | 138 | Potassium voltage-gated channel, subfamily H (EAG | 99.06 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 99.05 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 99.03 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 99.03 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 99.03 | |
| 3vol_A | 233 | Aerotaxis transducer AER2; heme, oxygen sensor pro | 99.02 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 98.98 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 98.97 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 98.94 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 98.9 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 98.9 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 98.9 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 98.87 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 98.87 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 98.85 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 98.83 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 98.82 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 98.69 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 98.67 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 98.61 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.59 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 98.58 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 98.55 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 98.51 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 98.42 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 98.42 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 98.33 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 98.31 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 98.27 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 98.23 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.22 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.13 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.97 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.85 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.83 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.6 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 96.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.48 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.22 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.11 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 96.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.68 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.66 | |
| 1oj5_A | 132 | Steroid receptor coactivator 1A; transcriptional c | 96.57 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.57 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.54 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.5 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.5 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.5 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 96.45 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.45 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.44 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 96.44 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.41 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 96.38 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.35 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.34 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.33 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.32 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.24 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.18 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.16 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.12 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.08 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.05 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.02 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.01 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 95.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.94 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.85 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 95.84 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.8 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.78 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.76 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.76 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.75 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.73 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.48 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 95.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.37 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.35 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.33 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.32 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 95.17 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.16 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.16 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.11 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.02 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 94.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 94.87 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 94.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 94.79 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 93.66 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 94.56 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 94.55 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 94.49 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 94.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.45 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.42 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 94.38 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 94.36 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 94.28 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.02 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 94.01 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 93.86 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 93.78 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 93.78 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 93.76 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 93.72 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 93.61 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 93.57 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.56 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 93.3 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 93.24 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 93.16 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.06 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 93.05 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 92.93 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 92.81 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 92.71 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 92.7 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 92.68 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 92.66 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 92.62 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 92.54 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 92.48 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 92.38 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 92.3 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 92.25 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 91.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 91.85 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 91.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 91.62 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 91.6 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 91.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.25 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 91.18 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 91.06 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 90.98 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 90.81 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 90.81 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 90.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 90.6 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 90.53 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 90.52 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 90.47 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 90.43 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.42 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 90.37 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 90.36 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 90.35 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 90.34 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 90.23 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 90.13 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 90.12 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.12 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 89.99 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 89.86 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 89.8 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 89.74 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 89.67 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 89.55 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 89.44 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 89.41 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 89.35 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 89.31 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.28 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 89.25 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 89.25 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 89.23 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 89.19 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 89.02 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 88.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 88.91 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 88.74 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 88.53 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 88.5 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 88.48 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 88.41 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 88.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 88.36 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 88.35 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 88.31 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 88.14 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 88.13 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 88.03 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 87.69 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 87.47 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 87.44 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 87.37 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 87.25 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 86.85 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 86.8 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 86.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 86.65 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 86.6 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 86.54 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 86.53 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 86.52 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 86.27 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 86.27 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 86.23 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 85.91 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 85.81 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 85.18 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 85.15 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 85.13 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 84.98 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 84.91 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 84.8 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 84.43 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 84.3 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 84.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 83.79 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 83.21 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 83.01 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 82.93 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 82.82 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 82.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 82.56 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 82.14 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 81.85 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 81.61 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 81.43 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 81.42 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 80.5 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 80.39 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 80.15 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 80.14 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 80.06 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 80.03 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 80.02 |
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.26 Aligned_cols=279 Identities=16% Similarity=0.188 Sum_probs=231.6
Q ss_pred CCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccC--
Q 048754 300 GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGC-- 377 (625)
Q Consensus 300 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~-- 377 (625)
+..|++|..|+++.++++||++||. ....++++++||+.+ ++|..+ +.+|.+|.+|+++++ +++|||+||.
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~ 81 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSN--GTWLRL--ADLQVPRSGLAGCVV-GGLLYAVGGRNN 81 (308)
T ss_dssp ------------CCCCCCEEEECCB--SSSBCCCEEEEETTT--TEEEEC--CCCSSCCBSCEEEEE-TTEEEEECCEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCC--CeEeEC--CCCCcccccceEEEE-CCEEEEECCCcC
Confidence 3567889999999999999999998 446788999999988 799988 678889999999887 6689999998
Q ss_pred --CCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 378 --GRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 378 --~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
.....++++++||+.++ +|+.++.+ |.+|..|+++.+ +++|||+||.... ..++++++||+.+++ |+.++
T Consensus 82 ~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~~~~--W~~~~ 153 (308)
T 1zgk_A 82 SPDGNTDSSALDCYNPMTN--QWSPCAPM--SVPRNRIGVGVI-DGHIYAVGGSHGC-IHHNSVERYEPERDE--WHLVA 153 (308)
T ss_dssp ETTEEEECCCEEEEETTTT--EEEECCCC--SSCCBTCEEEEE-TTEEEEECCEETT-EECCCEEEEETTTTE--EEECC
T ss_pred CCCCCeecceEEEECCCCC--eEeECCCC--CcCccccEEEEE-CCEEEEEcCCCCC-cccccEEEECCCCCe--EeECC
Confidence 45556889999999999 99999876 889999999988 5699999997653 467899999987765 99998
Q ss_pred CCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 456 TSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 456 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
. +|.+|.+|+++++++ +||++||...... ++++++||+. +.+|+.+..+ |.+|..|+++
T Consensus 154 ~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~ 212 (308)
T 1zgk_A 154 P--MLTRRIGVGVAVLNR-LLYAVGGFDGTNR----LNSAECYYPE--RNEWRMITAM------------NTIRSGAGVC 212 (308)
T ss_dssp C--CSSCCBSCEEEEETT-EEEEECCBCSSCB----CCCEEEEETT--TTEEEECCCC------------SSCCBSCEEE
T ss_pred C--CCccccceEEEEECC-EEEEEeCCCCCCc----CceEEEEeCC--CCeEeeCCCC------------CCccccceEE
Confidence 6 788999999999976 9999999876543 5899999998 6799999765 7899999999
Q ss_pred EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEE
Q 048754 536 SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHEL 615 (625)
Q Consensus 536 ~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~ 615 (625)
.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++|
T Consensus 213 ~~-~~~iyv~GG~~~~~-~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~y 283 (308)
T 1zgk_A 213 VL-HNCIYAAGGYDGQD-QLNSVERYDV--ETETWTFVA---PMKHRRSALGITVHQ-GRIYVLGGYDGHT-FLDSVECY 283 (308)
T ss_dssp EE-TTEEEEECCBCSSS-BCCCEEEEET--TTTEEEECC---CCSSCCBSCEEEEET-TEEEEECCBCSSC-BCCEEEEE
T ss_pred EE-CCEEEEEeCCCCCC-ccceEEEEeC--CCCcEEECC---CCCCCccceEEEEEC-CEEEEEcCcCCCc-ccceEEEE
Confidence 88 99999999987433 3789999999 789999985 678899999999986 5999999988754 58999999
Q ss_pred EccCCCCC
Q 048754 616 CLASKQDS 623 (625)
Q Consensus 616 ~~~~~~~~ 623 (625)
|+.++++.
T Consensus 284 d~~~~~W~ 291 (308)
T 1zgk_A 284 DPDTDTWS 291 (308)
T ss_dssp ETTTTEEE
T ss_pred cCCCCEEe
Confidence 99988764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=334.93 Aligned_cols=286 Identities=17% Similarity=0.222 Sum_probs=227.3
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCC-CCccceeEEEEcCCEEEEEccC-C
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSP-PGRWGHTLSSLNGSWLVVFGGC-G 378 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~-~ 378 (625)
++|.+|.+|++++++++|||+||... +++|+||+.+.+++|+++ +++| .+|.+|+++++ +++|||+||. .
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~--~~~p~~~R~~~~~~~~-~~~lyv~GG~~~ 76 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTAL--AAFPGGPRDQATSAFI-DGNLYVFGGIGK 76 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEEC--CCCTTCCCBSCEEEEE-TTEEEEECCEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeEC--CCCCCCcCccceEEEE-CCEEEEEcCCCC
Confidence 67889999999999999999999754 379999998544799988 6677 79999999988 5689999998 2
Q ss_pred ----CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC---------------------
Q 048754 379 ----RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG--------------------- 433 (625)
Q Consensus 379 ----~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------------------- 433 (625)
....++++|+||+.++ +|+.++.+. |.+|.+|+++.. +++|||+||.....
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTN--SWVKLMSHA-PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTT--EEEECSCCC-SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCC--cEEECCCCC-CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 2336899999999999 999999874 689999999887 66999999975321
Q ss_pred ------------ceeceEEEEecCCCCCceEEcCCCCCCCCCC-cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEc
Q 048754 434 ------------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRL-GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDL 500 (625)
Q Consensus 434 ------------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~ 500 (625)
..++++++||+.+++ |+.+.. +|.+|. +|+++++++ +||++||....+. .+++++.||+
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~--~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~---~~~~v~~~d~ 224 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQ--WSYAGE--SPWYGTAGAAVVNKGD-KTWLINGEAKPGL---RTDAVFELDF 224 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTE--EEEEEE--CSSCCCBSCEEEEETT-EEEEECCEEETTE---ECCCEEEEEC
T ss_pred hhhhccccccccCCcccEEEEeCCCCc--EEECCC--CCCCCcccccEEEECC-EEEEEeeecCCCc---ccCceEEEEe
Confidence 246899999987765 999965 666554 488888876 9999999875442 3689999998
Q ss_pred CCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC----------------CCCCCcEEEEeCC
Q 048754 501 GDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG----------------LHSPSQLFLLDPS 564 (625)
Q Consensus 501 ~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----------------~~~~~~v~~~d~~ 564 (625)
+.++.+|+.+..+ ..|.+|.+|+++.. +++|||+||.+.. .....++++||+
T Consensus 225 d~~~~~W~~~~~~----------~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~- 292 (357)
T 2uvk_A 225 TGNNLKWNKLAPV----------SSPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW- 292 (357)
T ss_dssp C---CEEEECCCS----------STTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEEC-
T ss_pred cCCCCcEEecCCC----------CCCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEec-
Confidence 4447899999876 23555678888888 8999999997432 112368999999
Q ss_pred CCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 565 EEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 565 ~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++|+.+. .+|.+|.+|++++++ ++||||||++..+..++|+++|++++++..
T Consensus 293 -~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 293 -HNGKWDKSG---ELSQGRAYGVSLPWN-NSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp -C---CEEEE---ECSSCCBSSEEEEET-TEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred -CCCceeeCC---CCCCCcccceeEEeC-CEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 799999984 678899999998886 599999999988777899999999988764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=315.74 Aligned_cols=271 Identities=15% Similarity=0.240 Sum_probs=228.6
Q ss_pred ceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEE
Q 048754 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVL 389 (625)
Q Consensus 310 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 389 (625)
..+.+++.||++||... ..++++++||+.+ ++|.++ +.+|.+|.+|+++++ +++||++||..+...++++++|
T Consensus 10 ~~~~~~~~i~v~GG~~~--~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 82 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP--KAIRSVECYDFKE--ERWHQV--AELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSY 82 (302)
T ss_dssp -----CEEEEEECCBSS--SBCCCEEEEETTT--TEEEEE--CCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEE
T ss_pred cccCCCCEEEEECCCCC--CCCCcEEEEcCcC--CcEeEc--ccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEE
Confidence 34457889999999754 4678899999998 799988 678889999999887 6689999999877788999999
Q ss_pred ECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEE
Q 048754 390 DLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLS 469 (625)
Q Consensus 390 d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 469 (625)
|+.++ +|+.++.+ |.+|..|+++.+ ++++||+||.... ..++++++||+.+++ |+.++. +|.+|..|+++
T Consensus 83 d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~ 152 (302)
T 2xn4_A 83 DPVKD--QWTSVANM--RDRRSTLGAAVL-NGLLYAVGGFDGS-TGLSSVEAYNIKSNE--WFHVAP--MNTRRSSVGVG 152 (302)
T ss_dssp ETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEEEEECSS-CEEEEEEEEETTTTE--EEEECC--CSSCCBSCEEE
T ss_pred CCCCC--ceeeCCCC--CccccceEEEEE-CCEEEEEcCCCCC-ccCceEEEEeCCCCe--EeecCC--CCCcccCceEE
Confidence 99999 99999976 889999999988 5699999998654 467899999987766 999976 78899999999
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
++++ +||++||...... ..++++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+
T Consensus 153 ~~~~-~iyv~GG~~~~~~--~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~GG~~ 214 (302)
T 2xn4_A 153 VVGG-LLYAVGGYDVASR--QCLSTVECYNAT--TNEWTYIAEM------------STRRSGAGVGVL-NNLLYAVGGHD 214 (302)
T ss_dssp EETT-EEEEECCEETTTT--EECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBS
T ss_pred EECC-EEEEEeCCCCCCC--ccccEEEEEeCC--CCcEEECCCC------------ccccccccEEEE-CCEEEEECCCC
Confidence 9977 9999999876542 135899999998 6799999765 789999999988 89999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.. ...+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 215 ~~-~~~~~~~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 215 GP-LVRKSVEVYDP--TTNAWRQVA---DMNMCRRNAGVCAVN-GLLYVVGGDDGSC-NLASVEYYNPTTDKWT 280 (302)
T ss_dssp SS-SBCCCEEEEET--TTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBCSSS-BCCCEEEEETTTTEEE
T ss_pred CC-cccceEEEEeC--CCCCEeeCC---CCCCccccCeEEEEC-CEEEEECCcCCCc-ccccEEEEcCCCCeEE
Confidence 43 34789999999 789999995 677889999998886 5999999988764 4899999999887653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=315.48 Aligned_cols=268 Identities=17% Similarity=0.222 Sum_probs=232.0
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcccee
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~ 362 (625)
...|++...+|..++ .+|.+|.+|+++.++++|||+||.... ..++++++||+.+ ++|+++ +++|.+|.+|+
T Consensus 32 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~ 103 (302)
T 2xn4_A 32 VECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVK--DQWTSV--ANMRDRRSTLG 103 (302)
T ss_dssp EEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTT--TEEEEE--CCCSSCCBSCE
T ss_pred EEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCCC--CceeeC--CCCCccccceE
Confidence 456899999999986 788899999999999999999998643 5678999999988 799988 67889999999
Q ss_pred EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC-ceeceEEE
Q 048754 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-VLLSDTYL 441 (625)
Q Consensus 363 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~ 441 (625)
++++ +++||++||......++++++||+.++ +|+.++.+ |.+|..|+++.+ +++||++||..... ..++++++
T Consensus 104 ~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 104 AAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPM--NTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp EEEE-TTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred EEEE-CCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCC--CCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence 9988 568999999987778899999999999 99999876 889999999888 56999999986554 46789999
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
||+.+++ |+.++. +|.+|.+|+++++++ +||++||.+.... .+++++||+. +.+|+.+..+
T Consensus 178 yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~-------- 238 (302)
T 2xn4_A 178 YNATTNE--WTYIAE--MSTRRSGAGVGVLNN-LLYAVGGHDGPLV----RKSVEVYDPT--TNAWRQVADM-------- 238 (302)
T ss_dssp EETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCBSSSSB----CCCEEEEETT--TTEEEEECCC--------
T ss_pred EeCCCCc--EEECCC--CccccccccEEEECC-EEEEECCCCCCcc----cceEEEEeCC--CCCEeeCCCC--------
Confidence 9987766 999975 788999999999976 9999999875432 5899999998 6799999765
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~ 593 (625)
|.+|..|+++.+ +++|||+||.+.. ...+++++||+ .+++|+.+. ..+|.+|.+|+++++++
T Consensus 239 ----~~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~--~~~~~~r~~~~~~~~~~ 300 (302)
T 2xn4_A 239 ----NMCRRNAGVCAV-NGLLYVVGGDDGS-CNLASVEYYNP--TTDKWTVVS--SCMSTGRSYAGVTVIDK 300 (302)
T ss_dssp ----SSCCBSCEEEEE-TTEEEEECCBCSS-SBCCCEEEEET--TTTEEEECS--SCCSSCCBSCEEEEEEC
T ss_pred ----CCccccCeEEEE-CCEEEEECCcCCC-cccccEEEEcC--CCCeEEECC--cccCcccccceEEEecc
Confidence 788999998888 9999999998643 34789999999 789999985 36788999999999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.84 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=229.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+.||++||... .+++++||+.+ ++|..+ +.+|.+|.+|+++++ +++|||+||.. ...++++++||+.++
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNPKD--YSWTDI--RCPFEKRRDAACVFW-DNVVYILGGSQ-LFPIKRMDCYNVVKD 80 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEETTT--TEEEEC--CCCSCCCBSCEEEEE-TTEEEEECCBS-SSBCCEEEEEETTTT
T ss_pred cceEEEEeCCCC----CceEEEecCCC--CCEecC--CCCCcccceeEEEEE-CCEEEEEeCCC-CCCcceEEEEeCCCC
Confidence 478999999754 78899999988 799988 678889999999988 66899999988 667899999999999
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+|..++.+ |.+|.+|+++.+ ++++||+||.......++++++||+.+++ |+.++. +|.+|..|+++++++
T Consensus 81 --~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~~~~~- 150 (306)
T 3ii7_A 81 --SWYSKLGP--PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPS--MLTQRCSHGMVEANG- 150 (306)
T ss_dssp --EEEEEECC--SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-
T ss_pred --eEEECCCC--CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCC--CcCCcceeEEEEECC-
Confidence 99999876 889999999988 66999999987566688999999987766 999976 888999999999877
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
+||++||..........++++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+.. ..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~~~-~~ 214 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPA--TETWTELCPM------------IEARKNHGLVFV-KDKIFAVGGQNGL-GG 214 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCEETT-EE
T ss_pred EEEEECCCCCCCCcccccceEEEeCCC--CCeEEECCCc------------cchhhcceEEEE-CCEEEEEeCCCCC-CC
Confidence 999999987655422236899999999 6799999765 789999999998 9999999998654 33
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 215 ~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 215 LDNVEYYDI--KLNEWKMVS---PMPWKGVTVKCAAVG-SIVYVLAGFQGVG-RLGHILEYNTETDKWV 276 (306)
T ss_dssp BCCEEEEET--TTTEEEECC---CCSCCBSCCEEEEET-TEEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred CceEEEeeC--CCCcEEECC---CCCCCccceeEEEEC-CEEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence 789999999 789999984 678899999999996 5999999998765 5899999999988764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.75 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=229.8
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccC---CCCCCCCCeEEEeccCCCCceEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEG---VNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~ 359 (625)
...||+.+.+|..++ .+|.+|.+|++++++++|||+||.. .....++++++||+.+ ++|+++ +++|.+|.
T Consensus 41 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~ 113 (308)
T 1zgk_A 41 LEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPC--APMSVPRN 113 (308)
T ss_dssp EEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEEC--CCCSSCCB
T ss_pred EEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC--CeEeEC--CCCCcCcc
Confidence 467899999999986 7888999999999999999999984 3345678999999988 799988 67888999
Q ss_pred ceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+|+++++ +++||++||......++++++||+.++ +|+.++.+ |.+|.+|+++.+ +++||++||..... .++++
T Consensus 114 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~ 186 (308)
T 1zgk_A 114 RIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPM--LTRRIGVGVAVL-NRLLYAVGGFDGTN-RLNSA 186 (308)
T ss_dssp TCEEEEE-TTEEEEECCEETTEECCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSSC-BCCCE
T ss_pred ccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCC--CccccceEEEEE-CCEEEEEeCCCCCC-cCceE
Confidence 9999988 568999999987777899999999999 99999876 889999999988 66999999986554 47899
Q ss_pred EEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcC
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~ 519 (625)
++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 187 ~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------ 249 (308)
T 1zgk_A 187 ECYYPERNE--WRMITA--MNTIRSGAGVCVLHN-CIYAAGGYDGQDQ----LNSVERYDVE--TETWTFVAPM------ 249 (308)
T ss_dssp EEEETTTTE--EEECCC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEECCCC------
T ss_pred EEEeCCCCe--EeeCCC--CCCccccceEEEECC-EEEEEeCCCCCCc----cceEEEEeCC--CCcEEECCCC------
Confidence 999987765 999975 888999999999976 9999999875443 5899999999 6799999765
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEE
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV 591 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~ 591 (625)
|.+|..|+++.+ +++|||+||.+.. ...+++++||+ .+++|+.+. .+|.+|.+|+++++
T Consensus 250 ------p~~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 250 ------KHRRSALGITVH-QGRIYVLGGYDGH-TFLDSVECYDP--DTDTWSEVT---RMTSGRSGVGVAVT 308 (308)
T ss_dssp ------SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEET--TTTEEEEEE---ECSSCCBSCEEEEC
T ss_pred ------CCCccceEEEEE-CCEEEEEcCcCCC-cccceEEEEcC--CCCEEeecC---CCCCCcccceeEeC
Confidence 788999999988 8999999998653 34789999999 789999994 68899999998864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=314.89 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=231.5
Q ss_pred ceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccce
Q 048754 282 ARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGH 361 (625)
Q Consensus 282 ~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~ 361 (625)
....||+.+.+|..++ .+|.+|.+|++++++++|||+||.. ...++++++||+.+ ++|..+ +++|.+|.+|
T Consensus 25 ~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~ 95 (306)
T 3ii7_A 25 SCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVK--DSWYSK--LGPPTPRDSL 95 (306)
T ss_dssp SEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTT--TEEEEE--ECCSSCCBSC
T ss_pred eEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCC--CeEEEC--CCCCccccce
Confidence 3557899999999986 6888999999999999999999987 56789999999998 799988 6688999999
Q ss_pred eEEEEcCCEEEEEccCC-CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCc---eec
Q 048754 362 TLSSLNGSWLVVFGGCG-RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV---LLS 437 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~-~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~---~~~ 437 (625)
+++++ +++|||+||.. ....++++++||+.++ +|+.++.+ |.+|..|+++.+ ++++|++||...... .++
T Consensus 96 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 96 AACAA-EGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSM--LTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp EEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCC--SSCCBSCEEEEE-TTEEEEECCEESCTTTCEECC
T ss_pred eEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCC--cCCcceeEEEEE-CCEEEEECCCCCCCCcccccc
Confidence 99988 66899999987 5567899999999999 99999876 889999999888 569999999865543 389
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccC
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTG 517 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 517 (625)
++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 170 ~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~~---- 234 (306)
T 3ii7_A 170 SCEVYDPATET--WTELCP--MIEARKNHGLVFVKD-KIFAVGGQNGLGG----LDNVEYYDIK--LNEWKMVSPM---- 234 (306)
T ss_dssp CEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCEETTEE----BCCEEEEETT--TTEEEECCCC----
T ss_pred eEEEeCCCCCe--EEECCC--ccchhhcceEEEECC-EEEEEeCCCCCCC----CceEEEeeCC--CCcEEECCCC----
Confidence 99999987766 999985 888999999999976 9999999876532 5899999999 6799999765
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG 593 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~ 593 (625)
|.+|..|+++.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++.+
T Consensus 235 --------p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~~~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 235 --------PWKGVTVKCAAV-GSIVYVLAGFQGVG-RLGHILEYNT--ETDKWVANS---KVRAFPVTSCLICVVD 295 (306)
T ss_dssp --------SCCBSCCEEEEE-TTEEEEEECBCSSS-BCCEEEEEET--TTTEEEEEE---EEECCSCTTCEEEEEE
T ss_pred --------CCCccceeEEEE-CCEEEEEeCcCCCe-eeeeEEEEcC--CCCeEEeCC---CcccccceeEEEEECC
Confidence 789999999998 99999999986443 4789999999 789999995 6678999999988754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=312.64 Aligned_cols=268 Identities=19% Similarity=0.244 Sum_probs=229.4
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
.+++.||++||.......++++++||+.+ ++|..+ +.+|.+|.+|+++.+ +++||++||..+...++++++||+.
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKT--QEWSFL--PSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTT--TEEEEC--CCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCC--CeEEeC--CCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECC
Confidence 36889999999545556788999999988 799988 567889999999987 5689999999877788999999999
Q ss_pred CCCCE---EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEE
Q 048754 393 AKQPT---WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLS 469 (625)
Q Consensus 393 t~~~~---W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 469 (625)
++ + |+.++.+ |.+|..|+++.+ ++++|++||.... ..++++++||+.+.+ |+.++. +|.+|..|+++
T Consensus 87 ~~--~~~~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~~~~ 156 (301)
T 2vpj_A 87 AD--EDGVWYSVAPM--NVRRGLAGATTL-GDMIYVSGGFDGS-RRHTSMERYDPNIDQ--WSMLGD--MQTAREGAGLV 156 (301)
T ss_dssp CC--TTCCCEEECCC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEETTTTE--EEEEEE--CSSCCBSCEEE
T ss_pred CC--CCCeeEECCCC--CCCccceeEEEE-CCEEEEEcccCCC-cccceEEEEcCCCCe--EEECCC--CCCCcccceEE
Confidence 98 8 9999876 889999999988 5699999998754 357899999987766 999975 78899999999
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
++++ +||++||..... ..+++++||+. +.+|+.+..+ |.+|..|+++.. +++|||+||.+
T Consensus 157 ~~~~-~iyv~GG~~~~~----~~~~~~~~d~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG~~ 216 (301)
T 2vpj_A 157 VASG-VIYCLGGYDGLN----ILNSVEKYDPH--TGHWTNVTPM------------ATKRSGAGVALL-NDHIYVVGGFD 216 (301)
T ss_dssp EETT-EEEEECCBCSSC----BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEEE-TTEEEEECCBC
T ss_pred EECC-EEEEECCCCCCc----ccceEEEEeCC--CCcEEeCCCC------------CcccccceEEEE-CCEEEEEeCCC
Confidence 9976 999999987654 26899999999 6799999755 789999999988 89999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
... ..+++++||+ .+++|+.+. .+|.+|.+|++++++ ++|||+||.++.. .++++++||+.++++.
T Consensus 217 ~~~-~~~~v~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~-~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 217 GTA-HLSSVEAYNI--RTDSWTTVT---SMTTPRCYVGATVLR-GRLYAIAGYDGNS-LLSSIECYDPIIDSWE 282 (301)
T ss_dssp SSS-BCCCEEEEET--TTTEEEEEC---CCSSCCBSCEEEEET-TEEEEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred CCc-ccceEEEEeC--CCCcEEECC---CCCCcccceeEEEEC-CEEEEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence 543 3789999999 789999995 678899999999886 5999999988765 5799999999887653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=321.67 Aligned_cols=278 Identities=17% Similarity=0.185 Sum_probs=232.4
Q ss_pred cceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccC-----CCCCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 281 LARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEG-----VNMQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 281 ~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
.....||+.+.+|...+ .+.|.+|.+|++++++++|||+||.. ......+++++||+.+ ++|+++ +++|
T Consensus 13 ~~~~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~~p 86 (315)
T 4asc_A 13 EGAVAYDPAANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGM--PPLP 86 (315)
T ss_dssp TEEEEEETTTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TEEEEC--CCBS
T ss_pred CceEEECCCCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC--CeEEEC--CCCC
Confidence 34567899999998733 23366899999999999999999963 2223356699999988 799987 6788
Q ss_pred CCccceeEEEEcCCEEEEEccCC---CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCC
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCG---RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDA 432 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 432 (625)
.+|.+|+++++ +++|||+||.. +...++++++||+.++ +|+.++++ |.+|.+|+++.+ +++|||+||....
T Consensus 87 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~ 160 (315)
T 4asc_A 87 SPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPL--PYVVYGHTVLSH-MDLVYVIGGKGSD 160 (315)
T ss_dssp SCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCTT
T ss_pred cchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCC--CCcccceeEEEE-CCEEEEEeCCCCC
Confidence 99999999988 66999999974 3557899999999999 99999876 889999999988 5599999998666
Q ss_pred CceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 433 GVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 433 ~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
...++++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... ++++++||+. +.+|+.+..
T Consensus 161 ~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~~ 229 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE--WKELAP--MQTARSLFGATVHDG-RIIVAAGVTDTGL----TSSAEVYSIT--DNKWAPFEA 229 (315)
T ss_dssp SCBCCCEEEEETTTTE--EEECCC--CSSCCBSCEEEEETT-EEEEEEEECSSSE----EEEEEEEETT--TTEEEEECC
T ss_pred CcccceEEEEeCCCCe--EEECCC--CCCchhceEEEEECC-EEEEEeccCCCCc----cceEEEEECC--CCeEEECCC
Confidence 7788999999987765 999986 888999999999977 9999999876543 5899999999 679999976
Q ss_pred ccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC----C----CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCC
Q 048754 513 NAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG----L----HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAW 584 (625)
Q Consensus 513 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~----~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~ 584 (625)
+ |.+|..|+++.+ +++|||+||.+.. . ...+++++||+ .+++|+.+ +|.+|.
T Consensus 230 ~------------p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~-----~~~~r~ 289 (315)
T 4asc_A 230 F------------PQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGV-----LREIAY 289 (315)
T ss_dssp C------------SSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEE-----ESCSSC
T ss_pred C------------CCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhh-----ccCCcC
Confidence 5 889999999988 8999999998531 1 23579999999 78999998 466788
Q ss_pred cceEEEECCcEEEEEcCc
Q 048754 585 GHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 585 ~~~~~~~~~~~i~i~GG~ 602 (625)
+|++++++ ++||++...
T Consensus 290 ~~~~~~~~-~~l~v~~~~ 306 (315)
T 4asc_A 290 AAGATFLP-VRLNVLRLT 306 (315)
T ss_dssp CSSCEEEE-EEECGGGSE
T ss_pred ccceEEeC-CEEEEEEeh
Confidence 89998887 599998753
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=318.90 Aligned_cols=278 Identities=18% Similarity=0.270 Sum_probs=232.1
Q ss_pred cccceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCC-----CCCCCCeEEEeccCCCCceEEcccCC
Q 048754 279 GRLARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVN-----MQPMDDTFVLNLDAANPEWRRVSVKS 353 (625)
Q Consensus 279 ~~~~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~~~~~~~~~~W~~~~~~~ 353 (625)
+......||+.+.+|...+. ..|.+|.+|+++..+++|||+||.... ....+++++||+.+ ++|.++ ++
T Consensus 22 GG~~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~--~~ 95 (318)
T 2woz_A 22 NDTAAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--SEWVGL--PP 95 (318)
T ss_dssp CSSEEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT--TEEEEC--SC
T ss_pred cccceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC--CcEEEC--CC
Confidence 33446789999999998542 345689999999999999999996421 12234599999988 799987 67
Q ss_pred CCCCccceeEEEEcCCEEEEEccCC--CCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC
Q 048754 354 SPPGRWGHTLSSLNGSWLVVFGGCG--RQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD 431 (625)
Q Consensus 354 ~p~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~ 431 (625)
+|.+|.+|+++++ +++|||+||.. ....++++++||+.++ +|+.++.+ |.+|.+|+++.. +++|||+||...
T Consensus 96 ~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~ 169 (318)
T 2woz_A 96 LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNL--PIKVYGHNVISH-NGMIYCLGGKTD 169 (318)
T ss_dssp BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCC--SSCEESCEEEEE-TTEEEEECCEES
T ss_pred CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCC--CCcccccEEEEE-CCEEEEEcCCCC
Confidence 8899999999988 56899999985 4557899999999999 99999876 889999999887 669999999876
Q ss_pred CCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 432 AGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 432 ~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
....++++++||+.+++ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+.
T Consensus 170 ~~~~~~~~~~yd~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~iyv~GG~~~~~~----~~~~~~yd~~--~~~W~~~~ 238 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGD--WKDLAP--MKTPRSMFGVAIHKG-KIVIAGGVTEDGL----SASVEAFDLK--TNKWEVMT 238 (318)
T ss_dssp SSCBCCCEEEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEEEEEETTEE----EEEEEEEETT--TCCEEECC
T ss_pred CCCccceEEEEcCCCCE--EEECCC--CCCCcccceEEEECC-EEEEEcCcCCCCc----cceEEEEECC--CCeEEECC
Confidence 66778999999987766 999985 889999999999877 9999999876432 5899999999 67999997
Q ss_pred eccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC--------CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCC
Q 048754 512 CNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG--------LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFA 583 (625)
Q Consensus 512 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r 583 (625)
.+ |.+|..|+++.+ +++|||+||.+.. ....+++|+||+ .+++|+.+ +|.+|
T Consensus 239 ~~------------p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~-----~~~~r 298 (318)
T 2woz_A 239 EF------------PQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGM-----LKEIR 298 (318)
T ss_dssp CC------------SSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEE-----ESCCG
T ss_pred CC------------CCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhh-----ccccc
Confidence 65 788999999988 8999999998642 133689999999 78999998 47788
Q ss_pred CcceEEEECCcEEEEEc
Q 048754 584 WGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 584 ~~~~~~~~~~~~i~i~G 600 (625)
++|++++++ ++|||+.
T Consensus 299 ~~~~~~~~~-~~iyi~~ 314 (318)
T 2woz_A 299 YASGASCLA-TRLNLFK 314 (318)
T ss_dssp GGTTCEEEE-EEEEGGG
T ss_pred ccccceeeC-CEEEEEE
Confidence 999999887 5999875
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=309.33 Aligned_cols=265 Identities=17% Similarity=0.272 Sum_probs=229.7
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCc---eEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPE---WRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~---W~~~~~~~~p~~r~ 359 (625)
...|++.+.+|..++ .+|.+|.+|+++.++++||++||.. ....++++++||+.+ ++ |+.+ +++|.+|.
T Consensus 33 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~--~~~~~W~~~--~~~p~~r~ 104 (301)
T 2vpj_A 33 VEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLDYTA--DEDGVWYSV--APMNVRRG 104 (301)
T ss_dssp EEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEETTC--CTTCCCEEE--CCCSSCCB
T ss_pred EEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCC-CCccCceEEEEECCC--CCCCeeEEC--CCCCCCcc
Confidence 456899999999987 6788999999999999999999986 346788999999988 67 9988 67889999
Q ss_pred ceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 360 GHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+|+++++ +++||++||......++++++||+.++ +|+.++.+ |.+|.+|+++.+ +++||++||.... ...+++
T Consensus 105 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~ 177 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDM--QTAREGAGLVVA-SGVIYCLGGYDGL-NILNSV 177 (301)
T ss_dssp SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEEC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCCE
T ss_pred ceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCC--CCCcccceEEEE-CCEEEEECCCCCC-cccceE
Confidence 9999988 568999999987777899999999999 99999876 889999999888 5699999997654 378899
Q ss_pred EEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcC
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVG 519 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~ 519 (625)
++||+.+.+ |+.++. +|.+|..|+++++++ +||++||...... .+++++||+. +.+|+.+..+
T Consensus 178 ~~~d~~~~~--W~~~~~--~p~~r~~~~~~~~~~-~i~v~GG~~~~~~----~~~v~~yd~~--~~~W~~~~~~------ 240 (301)
T 2vpj_A 178 EKYDPHTGH--WTNVTP--MATKRSGAGVALLND-HIYVVGGFDGTAH----LSSVEAYNIR--TDSWTTVTSM------ 240 (301)
T ss_dssp EEEETTTTE--EEEECC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEEECCC------
T ss_pred EEEeCCCCc--EEeCCC--CCcccccceEEEECC-EEEEEeCCCCCcc----cceEEEEeCC--CCcEEECCCC------
Confidence 999987766 999975 788999999999977 9999999876543 5899999999 6799999765
Q ss_pred CCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC
Q 048754 520 SQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG 592 (625)
Q Consensus 520 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~ 592 (625)
|.+|..|+++.+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|++++++
T Consensus 241 ------p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~--~~~~W~~~~---~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 241 ------TTPRCYVGATVL-RGRLYAIAGYDGNS-LLSSIECYDP--IIDSWEVVT---SMGTQRCDAGVCVLR 300 (301)
T ss_dssp ------SSCCBSCEEEEE-TTEEEEECCBCSSS-BEEEEEEEET--TTTEEEEEE---EEEEEEESCEEEEEE
T ss_pred ------CCcccceeEEEE-CCEEEEEcCcCCCc-ccccEEEEcC--CCCeEEEcC---CCCcccccceEEEeC
Confidence 788999999988 99999999976433 4689999999 789999995 678899999998874
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=306.88 Aligned_cols=262 Identities=19% Similarity=0.177 Sum_probs=217.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCC------CCCccccEEE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCG------RQGLLNDVFV 388 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~------~~~~~~~~~~ 388 (625)
.+.||++|| +++++||+.+ ++|... ..+.|.+|.+|+++++ +++|||+||.. .....+++++
T Consensus 4 ~~~l~~~GG--------~~~~~yd~~~--~~W~~~-~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~ 71 (315)
T 4asc_A 4 QDLIFMISE--------EGAVAYDPAA--NECYCA-SLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQ 71 (315)
T ss_dssp EEEEEEEET--------TEEEEEETTT--TEEEEE-ECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEE
T ss_pred ceEEEEEcC--------CceEEECCCC--CeEecC-CCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEE
Confidence 467999999 4699999998 799863 2334678999998877 66899999962 1224567999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcC--CCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCT--DAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
||+.++ +|+.++.+ |.+|.+|+++.+ ++++||+||.. .....++++++||+.+.+ |+.++. +|.+|.+|
T Consensus 72 ~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~--~p~~r~~~ 142 (315)
T 4asc_A 72 FDHLDS--EWLGMPPL--PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDP--LPYVVYGH 142 (315)
T ss_dssp EETTTT--EEEECCCB--SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCC--CSSCCBSC
T ss_pred ecCCCC--eEEECCCC--CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCC--CCCcccce
Confidence 999999 99999876 889999999988 66999999975 345678999999987765 999986 88899999
Q ss_pred eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 467 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
+++++++ +||++||...... .++++++||+. +.+|+.++.+ |.+|..|+++.+ +++|||+|
T Consensus 143 ~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~iyv~G 203 (315)
T 4asc_A 143 TVLSHMD-LVYVIGGKGSDRK---CLNKMCVYDPK--KFEWKELAPM------------QTARSLFGATVH-DGRIIVAA 203 (315)
T ss_dssp EEEEETT-EEEEECCBCTTSC---BCCCEEEEETT--TTEEEECCCC------------SSCCBSCEEEEE-TTEEEEEE
T ss_pred eEEEECC-EEEEEeCCCCCCc---ccceEEEEeCC--CCeEEECCCC------------CCchhceEEEEE-CCEEEEEe
Confidence 9999877 9999999854433 26999999999 6799999765 789999999988 89999999
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC----C----CccCceEEEEcc
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE----E----WVLNELHELCLA 618 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~----~----~~~~d~~~~~~~ 618 (625)
|.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++++ +|||+||.+.. + ..++++|+||+.
T Consensus 204 G~~~~~-~~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 204 GVTDTG-LTSSAEVYSI--TDNKWAPFE---AFPQERSSLSLVSLVG-TLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EECSSS-EEEEEEEEET--TTTEEEEEC---CCSSCCBSCEEEEETT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred ccCCCC-ccceEEEEEC--CCCeEEECC---CCCCcccceeEEEECC-EEEEECCccccCcCCccccccccCcEEEecCC
Confidence 986543 3689999999 789999995 6788999999999875 99999998642 1 357999999999
Q ss_pred CCCCC
Q 048754 619 SKQDS 623 (625)
Q Consensus 619 ~~~~~ 623 (625)
++++.
T Consensus 277 ~~~W~ 281 (315)
T 4asc_A 277 EKKWE 281 (315)
T ss_dssp TTEEE
T ss_pred CChhh
Confidence 88764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=332.58 Aligned_cols=287 Identities=16% Similarity=0.229 Sum_probs=228.9
Q ss_pred CCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcc-c---CCCCCCccceeEEEEc-CCEEEEEc
Q 048754 301 AVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVS-V---KSSPPGRWGHTLSSLN-GSWLVVFG 375 (625)
Q Consensus 301 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~---~~~p~~r~~~~~~~~~-~~~iyv~G 375 (625)
..|++|.++++ +++++|||+||... ..++++|+||+.+ ++|..+. . ..+|.+|.+|+++++. +++|||+|
T Consensus 384 ~~p~rr~g~~~-~~~~~iyv~GG~~~--~~~~~v~~yd~~~--~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~G 458 (695)
T 2zwa_A 384 CPINRKFGDVD-VAGNDVFYMGGSNP--YRVNEILQLSIHY--DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIG 458 (695)
T ss_dssp CTTCCBSCEEE-ECSSCEEEECCBSS--SBCCCEEEEEECS--SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEEC
T ss_pred CCCCCceeEEE-EECCEEEEECCCCC--CCcCcEEEEECCC--CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEc
Confidence 56666776654 48999999999866 6789999999988 7999986 3 2478999999999984 66899999
Q ss_pred cCCCCC-ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 376 GCGRQG-LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 376 G~~~~~-~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
|..... .++++|+||+.++ +|+.++.+ |.+|.+|+++.+.+++|||+||..... ++++||+.+++ |+.+
T Consensus 459 G~~~~~~~~~dv~~yd~~t~--~W~~~~~~--p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 459 GRKAPHQGLSDNWIFDMKTR--EWSMIKSL--SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEI--FKDV 528 (695)
T ss_dssp CBSSTTCBCCCCEEEETTTT--EEEECCCC--SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTE--EEEC
T ss_pred CCCCCCCccccEEEEeCCCC--cEEECCCC--CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCc--eEEc
Confidence 997654 7899999999999 99999877 889999999887566999999986554 89999987766 9999
Q ss_pred CCC-CCCCCCCcceEEEEC-C-cEEEEEcCCcCCCCcccccCceEEEEcCCCCCc------eeEeeeccccCcCCCCCCC
Q 048754 455 PTS-WSPPSRLGHSLSVYG-R-TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ------WKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 455 ~~~-~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~------W~~~~~~~~~~~~~~~~~~ 525 (625)
+.. .+|.+|++|++++++ + ++||++||....+. ..++++++||+. +.+ |+.+..+ +
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~--~~~~~v~~yd~~--~~~w~~~~~W~~~~~~-----------p 593 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT--TVSDKAIIFKYD--AENATEPITVIKKLQH-----------P 593 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSS--CBCCEEEEEEEC--TTCSSCCEEEEEEEEC-----------G
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCC--eeeCcEEEEEcc--CCccccceEEEEcCCC-----------C
Confidence 853 378899999987865 2 49999999865541 236899999999 556 8988764 2
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCC--CCCCcEEEEeCCCCCCCeEEEcCCCC----CCCCCCcceEEEECCcEEEEE
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGL--HSPSQLFLLDPSEEKPSWRILNVPGQ----PPKFAWGHSTCVVGGTRVLVL 599 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~--~~~~~v~~~d~~~~~~~W~~v~~~~~----~p~~r~~~~~~~~~~~~i~i~ 599 (625)
+.+|.+|+++.+.+++|||+||.+... ...+++++||+ .+++|+.+..+.. ++..+.+|+++++.+++|||+
T Consensus 594 ~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~ 671 (695)
T 2zwa_A 594 LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP--LSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHII 671 (695)
T ss_dssp GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET--TTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEE
T ss_pred CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC--CCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEE
Confidence 588999999998339999999986543 35789999999 7899997653321 123677899888877799999
Q ss_pred cCcC---CCCCccCceEEEEccC
Q 048754 600 GGHT---GEEWVLNELHELCLAS 619 (625)
Q Consensus 600 GG~~---~~~~~~~d~~~~~~~~ 619 (625)
||.. +.+.+.|++|.|++.+
T Consensus 672 GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 672 GGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp CCEEECTTSCEEECCCEEEEECC
T ss_pred eCCccCcCccccccceEEEEEEc
Confidence 9954 3355688999999865
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=299.55 Aligned_cols=270 Identities=17% Similarity=0.228 Sum_probs=219.4
Q ss_pred CCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC----
Q 048754 304 PSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR---- 379 (625)
Q Consensus 304 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~---- 379 (625)
.+|.++.. .+.||++||. ++++||+.+ ++|.... .+.|.+|.+|+++.+ +++||++||...
T Consensus 7 ~~r~~~~~---~~~i~~~GG~--------~~~~yd~~~--~~W~~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 71 (318)
T 2woz_A 7 IPRHGMFV---KDLILLVNDT--------AAVAYDPME--NECYLTA-LAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEEN 71 (318)
T ss_dssp SCCCCCSE---EEEEEEECSS--------EEEEEETTT--TEEEEEE-ECTTSCSSEEEEECS-SSCEEEEESSCC----
T ss_pred ccccccee---cchhhhcccc--------ceEEECCCC--Cceeccc-CCccCCccceEEEEE-CCEEEEECCcccCccc
Confidence 34555432 4689999994 379999988 7999742 344678998888876 568999999631
Q ss_pred --CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCC-CCceeceEEEEecCCCCCceEEcCC
Q 048754 380 --QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTD-AGVLLSDTYLLDLTTDKPMWREIPT 456 (625)
Q Consensus 380 --~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~W~~~~~ 456 (625)
....+++++||+.++ +|..++.+ |.+|..|+++.+ ++++||+||... ....++++++||+.+.+ |+.++.
T Consensus 72 ~~~~~~~~~~~~d~~~~--~W~~~~~~--p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~ 144 (318)
T 2woz_A 72 KDQPLQSYFFQLDNVSS--EWVGLPPL--PSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKN 144 (318)
T ss_dssp ---CCCBEEEEEETTTT--EEEECSCB--SSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECC
T ss_pred cCCCccccEEEEeCCCC--cEEECCCC--CccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCC
Confidence 123456999999999 99999877 889999999888 569999999863 45678999999987765 999985
Q ss_pred CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 457 SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 457 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
+|.+|.+|+++++++ +||++||...... .++++++||+. +.+|+.+..+ |.+|..|+++.
T Consensus 145 --~p~~r~~~~~~~~~~-~iyv~GG~~~~~~---~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~ 204 (318)
T 2woz_A 145 --LPIKVYGHNVISHNG-MIYCLGGKTDDKK---CTNRVFIYNPK--KGDWKDLAPM------------KTPRSMFGVAI 204 (318)
T ss_dssp --CSSCEESCEEEEETT-EEEEECCEESSSC---BCCCEEEEETT--TTEEEEECCC------------SSCCBSCEEEE
T ss_pred --CCCcccccEEEEECC-EEEEEcCCCCCCC---ccceEEEEcCC--CCEEEECCCC------------CCCcccceEEE
Confidence 888999999999876 9999999865433 26899999999 6799999765 78999999988
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC--------CCc
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE--------EWV 608 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~--------~~~ 608 (625)
+ +++|||+||.+... ..+++++||+ .+++|+.+. .+|.+|.+|+++++++ +|||+||.+.. ...
T Consensus 205 ~-~~~iyv~GG~~~~~-~~~~~~~yd~--~~~~W~~~~---~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 205 H-KGKIVIAGGVTEDG-LSASVEAFDL--KTNKWEVMT---EFPQERSSISLVSLAG-SLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp E-TTEEEEEEEEETTE-EEEEEEEEET--TTCCEEECC---CCSSCCBSCEEEEETT-EEEEECCBCCBC----CCBCCB
T ss_pred E-CCEEEEEcCcCCCC-ccceEEEEEC--CCCeEEECC---CCCCcccceEEEEECC-EEEEECCeeccCCCCceeccce
Confidence 8 89999999986533 3679999999 789999984 6788999999998874 99999998753 134
Q ss_pred cCceEEEEccCCCCC
Q 048754 609 LNELHELCLASKQDS 623 (625)
Q Consensus 609 ~~d~~~~~~~~~~~~ 623 (625)
.+|+|+||+.++++.
T Consensus 277 ~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 277 VNDIWKYEDDKKEWA 291 (318)
T ss_dssp CCCEEEEETTTTEEE
T ss_pred eeeEEEEeCCCCEeh
Confidence 799999999988764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=291.30 Aligned_cols=262 Identities=18% Similarity=0.238 Sum_probs=205.1
Q ss_pred eeeeecc--cCeeEEeeecCCCC-CCCcccceEEECCEEEEEcccCC----CCCCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 283 RELTTLE--AVCWRKFTVRGAVE-PSRCNFSACAAGNRLVLFGGEGV----NMQPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 283 ~~~~~~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~----~~~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
...|++. +.+|..++ .+| .+|.+|++++++++|||+||... ....++++|+||+.+ ++|+++...+ |
T Consensus 33 ~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~~-p 106 (357)
T 2uvk_A 33 WYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT--NSWVKLMSHA-P 106 (357)
T ss_dssp EEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT--TEEEECSCCC-S
T ss_pred EEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC--CcEEECCCCC-C
Confidence 4567776 48999987 577 78999999999999999999822 335688999999998 7999985322 5
Q ss_pred CCccceeEEEEcCCEEEEEccCCCC----------------------------------CccccEEEEECCCCCCEEEEc
Q 048754 356 PGRWGHTLSSLNGSWLVVFGGCGRQ----------------------------------GLLNDVFVLDLDAKQPTWIEV 401 (625)
Q Consensus 356 ~~r~~~~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~~d~~t~~~~W~~~ 401 (625)
.+|.+|+++++ +++|||+||.... ..++++++||+.++ +|+.+
T Consensus 107 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 183 (357)
T 2uvk_A 107 MGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ--QWSYA 183 (357)
T ss_dssp SCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT--EEEEE
T ss_pred cccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCC--cEEEC
Confidence 88999999886 6699999998643 24689999999999 99999
Q ss_pred CCCCCCCCC-ccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 402 SGGAPPLPR-SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFG 480 (625)
Q Consensus 402 ~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 480 (625)
+.+ |.+| .+|+++.+ +++|||+||....+..++++++||++..+.+|+.++....|.+|.+|+++++++ +||++|
T Consensus 184 ~~~--p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~iyv~G 259 (357)
T 2uvk_A 184 GES--PWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND-SLIFAG 259 (357)
T ss_dssp EEC--SSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT-EEEEEC
T ss_pred CCC--CCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC-EEEEEc
Confidence 765 5554 44888777 669999999876666788999999855556699998643445577888888877 999999
Q ss_pred CCcCCCC-------------cccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEec
Q 048754 481 GLAKSGH-------------LRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGG 547 (625)
Q Consensus 481 G~~~~~~-------------~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 547 (625)
|....+. ......++++||+. +.+|+.+..+ |.+|.+|+++.+ +++|||+||
T Consensus 260 G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~------------p~~r~~~~~~~~-~~~i~v~GG 324 (357)
T 2uvk_A 260 GAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGEL------------SQGRAYGVSLPW-NNSLLIIGG 324 (357)
T ss_dssp CEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEEC------------SSCCBSSEEEEE-TTEEEEEEE
T ss_pred CccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCC------------CCCcccceeEEe-CCEEEEEee
Confidence 9754321 01123688999999 6799999876 789999999888 999999999
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
.+......+++++|++ ++++|....
T Consensus 325 ~~~~~~~~~~v~~l~~--~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITV--KDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC---CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEE--cCcEeEeee
Confidence 8766555799999999 789998875
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=282.92 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=195.8
Q ss_pred CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcC-C---CCCCCCCccceEEEEc-CCEEEEE
Q 048754 352 KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVS-G---GAPPLPRSWHSSCIIE-GSKLVVS 426 (625)
Q Consensus 352 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~-~---~~~p~~r~~~~~~~~~-~~~iyv~ 426 (625)
+..|+.|++++++ + +++|||+||.+. ..++++|+||+.++ +|..++ + ...|.+|.+|+++.+. ++++||+
T Consensus 383 ~~~p~rr~g~~~~-~-~~~iyv~GG~~~-~~~~~v~~yd~~~~--~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~ 457 (695)
T 2zwa_A 383 ECPINRKFGDVDV-A-GNDVFYMGGSNP-YRVNEILQLSIHYD--KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLI 457 (695)
T ss_dssp CCTTCCBSCEEEE-C-SSCEEEECCBSS-SBCCCEEEEEECSS--CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEE
T ss_pred CCCCCCceeEEEE-E-CCEEEEECCCCC-CCcCcEEEEECCCC--eEEEeccCCCCCCCCccccceEEEEEccCCEEEEE
Confidence 4456667665544 4 668999999977 77899999999999 999887 4 2358899999999994 5699999
Q ss_pred cCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCc
Q 048754 427 GGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ 506 (625)
Q Consensus 427 GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~ 506 (625)
||.......++++|+||+.+++ |+.++. +|.+|++|+++++.+++||++||..... ++++||+. +.+
T Consensus 458 GG~~~~~~~~~dv~~yd~~t~~--W~~~~~--~p~~R~~h~~~~~~~~~iyv~GG~~~~~-------~v~~yd~~--t~~ 524 (695)
T 2zwa_A 458 GGRKAPHQGLSDNWIFDMKTRE--WSMIKS--LSHTRFRHSACSLPDGNVLILGGVTEGP-------AMLLYNVT--EEI 524 (695)
T ss_dssp CCBSSTTCBCCCCEEEETTTTE--EEECCC--CSBCCBSCEEEECTTSCEEEECCBCSSC-------SEEEEETT--TTE
T ss_pred cCCCCCCCccccEEEEeCCCCc--EEECCC--CCCCcccceEEEEcCCEEEEECCCCCCC-------CEEEEECC--CCc
Confidence 9988766678999999987765 999976 8899999999997455999999986532 89999999 679
Q ss_pred eeEeeeccccCcCCCCCCCCCCccceEEEEec-C-CEEEEEecCCCCC-CCCCcEEEEeCCCCCCC------eEEEcCCC
Q 048754 507 WKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-C-GRIIIFGGSIAGL-HSPSQLFLLDPSEEKPS------WRILNVPG 577 (625)
Q Consensus 507 W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~~-~~~~~v~~~d~~~~~~~------W~~v~~~~ 577 (625)
|+.+... +..|.+|.+|+++++. + ++|||+||..... ...+++|+||+ .+++ |+.+..
T Consensus 525 W~~~~~~---------g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~--~~~~w~~~~~W~~~~~-- 591 (695)
T 2zwa_A 525 FKDVTPK---------DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY--DAENATEPITVIKKLQ-- 591 (695)
T ss_dssp EEECCCS---------SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEE--CTTCSSCCEEEEEEEE--
T ss_pred eEEccCC---------CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEc--cCCccccceEEEEcCC--
Confidence 9999864 3468899999977762 2 8999999986543 45799999999 6777 888863
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCcCCCC--CccCceEEEEccCCCC
Q 048754 578 QPPKFAWGHSTCVVGGTRVLVLGGHTGEE--WVLNELHELCLASKQD 622 (625)
Q Consensus 578 ~~p~~r~~~~~~~~~~~~i~i~GG~~~~~--~~~~d~~~~~~~~~~~ 622 (625)
.++.+|.+|+++++++++|||+||.+... ...+++++||+.++++
T Consensus 592 ~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 592 HPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp CGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 23578999999999856999999987654 3589999999998765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=281.72 Aligned_cols=306 Identities=14% Similarity=0.109 Sum_probs=220.5
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEE--CCEEEEEcccCCCC-----CCCCCeEEEeccCCCCceEEcccCCCC
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAA--GNRLVLFGGEGVNM-----QPMDDTFVLNLDAANPEWRRVSVKSSP 355 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p 355 (625)
...|++..++|..+. ++ |+..++++++ +++||++||..... ...+++++||+.+ ++|+.+ ..+|
T Consensus 168 ~~~~dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~--~~~~ 238 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDR--TVTV 238 (656)
T ss_dssp CCCCCTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCC--EEEE
T ss_pred cccCCCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeC--cccC
Confidence 567899999999876 23 3455666666 99999999975431 1244789999988 799977 3455
Q ss_pred CCccce--eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC
Q 048754 356 PGRWGH--TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG 433 (625)
Q Consensus 356 ~~r~~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~ 433 (625)
.+|..| +++++.+++||++||.... ++++||+.++ +|.+++.+ |.+|.+|+++.+.++++||+||.....
T Consensus 239 ~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~--~W~~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 239 TKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSD--SWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp CSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGT--EEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSS
T ss_pred CCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCC--ceeECCCC--CccccccceEEecCCeEEEEeCcccCC
Confidence 555444 4555567789999997643 7999999999 99999877 889999999888566899999965555
Q ss_pred ceeceEEEEecCCCCCceEEcCCC---CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTS---WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
..++++++||+.+++ |+.++.. +++..+. ++++.. ++++|++||.+.........++++.||+. +..|...
T Consensus 311 ~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~-~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~--~~~w~~~ 384 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADK-QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTS--GSGDVKS 384 (656)
T ss_dssp SCCCCEEEEETTTTE--EEEETTSCSGGGCCCCT-TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECS--TTCEEEE
T ss_pred cccccceEeCCCCCc--ceeCCCccccccccccc-cceeec-CCceEEEECCCCcEEEecCccceeeeecC--Ccceeec
Confidence 578899999987766 9998532 1333333 233334 44999999986532211235789999998 5577654
Q ss_pred eeccccCcCCCCCC---CCCCccceEEEE--ecCCEEEEEecCCC--CCCCCC---cEEEEeCCCCCCCeEEEcCCCCCC
Q 048754 511 ECNAFTGVGSQSAV---VPPPRLDHVAVS--MPCGRIIIFGGSIA--GLHSPS---QLFLLDPSEEKPSWRILNVPGQPP 580 (625)
Q Consensus 511 ~~~~~~~~~~~~~~---~p~~r~~~~~~~--~~~~~l~v~GG~~~--~~~~~~---~v~~~d~~~~~~~W~~v~~~~~~p 580 (625)
.... .. .++++..++++. ..+++|||+||... +....+ .+++||+ .+++|..+. .+.+|
T Consensus 385 ~~~~--------~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~-~~~mp 453 (656)
T 1k3i_A 385 AGKR--------QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFA-SNGLY 453 (656)
T ss_dssp EEEC--------EETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEEC-TTCCS
T ss_pred CCcc--------ccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEc-cCCCC
Confidence 3321 00 022344556654 23899999999743 222244 7889999 789999886 24788
Q ss_pred CCCCcceEEEECCcEEEEEcCcCCC-----CCccCceEEEEccCCCC
Q 048754 581 KFAWGHSTCVVGGTRVLVLGGHTGE-----EWVLNELHELCLASKQD 622 (625)
Q Consensus 581 ~~r~~~~~~~~~~~~i~i~GG~~~~-----~~~~~d~~~~~~~~~~~ 622 (625)
.+|..|+++++.+++|||+||.+.. ...++++++||+.++++
T Consensus 454 ~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W 500 (656)
T 1k3i_A 454 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 500 (656)
T ss_dssp SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce
Confidence 9999999999977899999997632 23579999999988764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=267.06 Aligned_cols=300 Identities=14% Similarity=0.090 Sum_probs=213.6
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccc--eE-EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFS--AC-AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~--~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~ 359 (625)
..+||+.+++|..++ .+|.+|..|+ ++ +.+++||++||+... ++++||+.+ ++|.++ +.+|.+|.
T Consensus 221 ~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t--~~W~~~--~~~~~~R~ 288 (656)
T 1k3i_A 221 TSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSS--DSWIPG--PDMQVARG 288 (656)
T ss_dssp EEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGG--TEEEEC--CCCSSCCS
T ss_pred EEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcC--CceeEC--CCCCcccc
Confidence 467899999999886 4555666654 33 358999999997543 699999998 799987 67899999
Q ss_pred ceeEEEEcCCEEEEEccC-CCCCccccEEEEECCCCCCEEEEcCCC---CCCCCCccceEEEEcCCEEEEEcCcCCCC--
Q 048754 360 GHTLSSLNGSWLVVFGGC-GRQGLLNDVFVLDLDAKQPTWIEVSGG---APPLPRSWHSSCIIEGSKLVVSGGCTDAG-- 433 (625)
Q Consensus 360 ~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~d~~t~~~~W~~~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-- 433 (625)
+|+++++.+++|||+||. .+...++++++||+.++ +|+.++.. +.+..|. +++ ...++++|++||.+...
T Consensus 289 ~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~--~W~~~~~~~~~p~~~~~~-~~~-~~~~~~iyv~Gg~~g~~~~ 364 (656)
T 1k3i_A 289 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLTADK-QGL-YRSDNHAWLFGWKKGSVFQ 364 (656)
T ss_dssp SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--EEEEETTSCSGGGCCCCT-TGG-GTTTCSCCEEECGGGCEEE
T ss_pred ccceEEecCCeEEEEeCcccCCcccccceEeCCCCC--cceeCCCccccccccccc-cce-eecCCceEEEECCCCcEEE
Confidence 999998856689999994 55557889999999999 99998532 1133333 233 33466899999975321
Q ss_pred -ceeceEEEEecCCCCCceEEcCCC-CC----CCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccC---ceEEEEcCC
Q 048754 434 -VLLSDTYLLDLTTDKPMWREIPTS-WS----PPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSG---ESYTIDLGD 502 (625)
Q Consensus 434 -~~~~~~~~~d~~~~~~~W~~~~~~-~~----p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~---~~~~~d~~~ 502 (625)
...++++.||+.++. |...... .. ++++..++++++ .+++||++||....... ..++ .+++||+.
T Consensus 365 ~~~~~~v~~yd~~~~~--w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~-~~~~~~~~v~~yd~~- 440 (656)
T 1k3i_A 365 AGPSTAMNWYYTSGSG--DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS-DATTNAHIITLGEPG- 440 (656)
T ss_dssp CCSSSEEEEEECSTTC--EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS-BCCCCEEEEECCSTT-
T ss_pred ecCccceeeeecCCcc--eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC-CcCCcceEEEcCCCC-
Confidence 135789999987765 7653211 11 223445555542 24599999997532110 1134 67888988
Q ss_pred CCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC-----CCCCCcEEEEeCCCCCCCeEEEcCCC
Q 048754 503 EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG-----LHSPSQLFLLDPSEEKPSWRILNVPG 577 (625)
Q Consensus 503 ~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~~~v~~~d~~~~~~~W~~v~~~~ 577 (625)
+.+|..+.. +.+|.+|..|+++++.+++|||+||.+.+ .....++++||+ .+++|+.+.
T Consensus 441 -~~~W~~~~~----------~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp--~t~~W~~~~--- 504 (656)
T 1k3i_A 441 -TSPNTVFAS----------NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP--EQDTFYKQN--- 504 (656)
T ss_dssp -SCCEEEECT----------TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG--GGTEEEECC---
T ss_pred -CCCeeEEcc----------CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC--CCCceeecC---
Confidence 679998861 12488999999988889999999997632 233689999999 789999874
Q ss_pred CCCCCCCcceEEEE-CCcEEEEEcCcCCCCC--ccCceEEEEcc
Q 048754 578 QPPKFAWGHSTCVV-GGTRVLVLGGHTGEEW--VLNELHELCLA 618 (625)
Q Consensus 578 ~~p~~r~~~~~~~~-~~~~i~i~GG~~~~~~--~~~d~~~~~~~ 618 (625)
.+|.+|.+|+++++ .+++|||+||....+. -.-++.+|...
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred CCCCccccccHhhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 67889999997766 5679999999632211 13455666643
|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-19 Score=166.07 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=132.0
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEee
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFKK 136 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 136 (625)
|+++|. +|+|+++|++|++++||+++|++|++...+.. +.........+.+.+..+..+..|.+.+++
T Consensus 2 i~i~D~---~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 69 (227)
T 3ewk_A 2 VSITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNS---------GYHGKAYIRDMWRTISRGNIWQGEFCNRRK 69 (227)
T ss_dssp EEEEET---TCBEEEECHHHHHHTTCCHHHHTTSBGGGGCC---------SCSCHHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred EEEECC---CCcEEehHHHHHHHHCcCHHHHcCCCHHHcCC---------CCCCHHHHHHHHHHHHcCCeEEEEEEEEcC
Confidence 678899 99999999999999999999999998876643 234556667777888888999999999999
Q ss_pred cCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCcchhhhhhhhccccccccccccCCCCCCcccccccccccCc
Q 048754 137 DGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQYFSGGHSPLSQHQDICGILQLS 216 (625)
Q Consensus 137 dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~ 216 (625)
||+.+|+.+++.|+.+.+|.+.+++++.+|||++|++|+.. +.+++ ..........+.|.+..++++|+++++++||+
T Consensus 70 dG~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l-~~~~~-~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~ 147 (227)
T 3ewk_A 70 DGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQL-ARLKQ-AMDANSEMILLTDRAGRIIYANPALCRFSGMA 147 (227)
T ss_dssp SSCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHH-HHHHH-HHHTCCSEEEEECTTSCEEEECHHHHHHHTCC
T ss_pred CCCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHH-HHHHH-HHhcCcCeEEEEcCCCcEEEEchHHHHHhCCC
Confidence 99999999999999999999999999999999999876521 11111 11222223334477777889999999999999
Q ss_pred -hhHHHHhhhcccCchhhh
Q 048754 217 -DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 217 -~e~~~~~~~~~~~~~~~~ 234 (625)
+|++|..+..+.++.+..
T Consensus 148 ~~e~~g~~~~~l~~~~~~~ 166 (227)
T 3ewk_A 148 EGELLGQSPSILDSPLADQ 166 (227)
T ss_dssp THHHHSSCGGGGBCTTSCH
T ss_pred HHHHcCCChhhccCCCCCH
Confidence 899988887777765543
|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=127.07 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=98.7
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+.+++. ++++|+++|. +|+|+++|++|++++||+++|++|++...+.. +.........+.+.+.
T Consensus 6 ~~~~~~~~--~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~---------~~~~~~~~~~~~~~~~ 71 (120)
T 2gj3_A 6 IFRQTVEH--APIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSN---------GTTPRLVYQALWGRLA 71 (120)
T ss_dssp HHHHHHHH--CSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCC---------TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCC---------CCCCHHHHHHHHHHHH
Confidence 34455555 8999999999 99999999999999999999999998777743 2334445566777778
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccc
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~ 171 (625)
.+..+..+.+.+++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++|
T Consensus 72 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 72 QKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred cCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 8888999999999999999999999999999999999999999999875
|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-15 Score=120.26 Aligned_cols=108 Identities=44% Similarity=0.745 Sum_probs=94.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+++|+++|..+.+|+|+++|++|++++||+++|++|++...+.. |.........+++.+..++.+..+++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~ 72 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQG---------EGTDPKEVQKIRDAIKKGEACSVRLL 72 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCC---------CCCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 578999999533379999999999999999999999998776643 34455667788888888999999999
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
.+++||+.+|+.+++.|+.+++|.+.+++++.+|||+
T Consensus 73 ~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 73 NYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999995
|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=122.86 Aligned_cols=111 Identities=36% Similarity=0.602 Sum_probs=94.7
Q ss_pred CCCCeeEEEecCCCCCC---CEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce
Q 048754 51 PTTPTSFVVADAFDPDF---PIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF 127 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (625)
+.++++|+++|. +| +|+++|++|++++||+++|++|++...+.. |.........+.+.+..+..+
T Consensus 6 ~~~~~~i~~~d~---~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~ 73 (132)
T 2pr5_A 6 DHVRVGVVITDP---ALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQG---------KHTDPAEVDNIRTALQNKEPV 73 (132)
T ss_dssp CCCCCEEEEECT---TSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHHTCCE
T ss_pred hcCCCcEEEEeC---CCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCC---------CCCCHHHHHHHHHHHHcCCCe
Confidence 448999999998 76 999999999999999999999998766643 334455556677777788888
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+.+.+++||+.+|+.+.+.|+.+.+ +.+++++.+|||++|++|+
T Consensus 74 ~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~ 119 (132)
T 2pr5_A 74 TVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEK 119 (132)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHH
T ss_pred EEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHH
Confidence 889999999999999999999998765 7889999999999998766
|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=120.42 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=93.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 129 (625)
+++++.|++.|. +|+++++|+++++++||+++|++|++..++. ||++.+.....+.+.+. .+..+..
T Consensus 9 e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i---------~p~d~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T 3f1p_B 9 CQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFC---------HPEDQQLLRDSFQQVVKLKGQVLSV 76 (121)
T ss_dssp CCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGB---------CTTTHHHHHHHHHHHTTSTTCCEEE
T ss_pred cCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHhcCCCcccE
Confidence 448999999999 9999999999999999999999999877774 46566655666666664 4557888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
+++++++||+.+|+.+...|+.+. +|.+.+++++.+|||++|+
T Consensus 77 e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 77 MFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 999999999999999999999987 7888999999999999875
|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=119.21 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=95.1
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+++.|++.|. +|+++++|+++++++||+++|++|++...+. ||++.+.....+.+.+..+..+..+++
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~---------~p~d~~~~~~~~~~~~~~~~~~~~e~r 75 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFY---------HALDSENMTKSHQNLCTKGQVVSGQYR 75 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHHHHSEEECCCEE
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheE---------CHHHHHHHHHHHHHHHhCCCeeeeEEE
Confidence 5688999999 9999999999999999999999998877764 466666666777777777888888999
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
++++||+.+|+.+...|+.+. +|.+.+++++.+|||++++
T Consensus 76 ~~~~dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 76 MLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EECTTSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEecCCCEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 999999999999999999987 7889999999999999875
|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=128.24 Aligned_cols=121 Identities=25% Similarity=0.361 Sum_probs=105.2
Q ss_pred eeecccccccCCCCeeEEEecCCCCC---CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHH
Q 048754 41 LSLKPGLLFYPTTPTSFVVADAFDPD---FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEI 117 (625)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 117 (625)
+++.+.+++. ++++|+++|. + |+|+++|++|++++||++++++|++...+.. |.........+
T Consensus 6 ~~~~~~~~~~--~~~~i~~~d~---~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~---------~~~~~~~~~~~ 71 (176)
T 4hia_A 6 FEKIRAVFDR--SGVALTLVDM---SLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQR---------GDENAQARADI 71 (176)
T ss_dssp HHHHHHHHHH--CSSCCEEEET---TSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCC---------TTCCHHHHHHH
T ss_pred HHHHHHHHhc--CCCcEEEEec---CCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeC---------CCCCHHHHHHH
Confidence 3444556666 8999999999 7 9999999999999999999999999777753 44566667778
Q ss_pred HHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 118 RRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 118 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.+..+..+..+.+..++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++|++|+
T Consensus 72 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~ 129 (176)
T 4hia_A 72 RDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEE 129 (176)
T ss_dssp HHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHH
T ss_pred HHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHH
Confidence 8888888899999999999999999999999999999999999999999999998765
|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=121.40 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=97.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+++++|.+|. ++.++++|+++.+++||+++++.+.....+ +.+||++.+.....+...+..+..+..|++
T Consensus 18 ~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-------~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r 87 (142)
T 3mr0_A 18 ASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHR-------ESIHPDDRARVLAALKAHLEHRDTYDVEYR 87 (142)
T ss_dssp TTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC----------CCBCTTTHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHH-------hhcCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 8899999999 999999999999999999998766322111 125777777777778888888888999999
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
++++||...|+.....++.+.+|.+..++|+++|||++|++|+
T Consensus 88 ~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~ 130 (142)
T 3mr0_A 88 VRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDED 130 (142)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHH
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHH
Confidence 9999999999999999999999999999999999999998876
|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-14 Score=134.94 Aligned_cols=162 Identities=29% Similarity=0.405 Sum_probs=113.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|....+|+|+++|++|++++||++++++|++...+.+ |.........+...+..
T Consensus 65 ~~~i~~~--~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~---------~~~~~~~~~~~~~~l~~ 133 (258)
T 3p7n_A 65 VLDLIEA--SPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAG---------SGTEPWLTDKIRQGVRE 133 (258)
T ss_dssp HHHHHHT--CSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCC---------TTCCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccC---------CCCchhHHHHHHHHHHc
Confidence 3444445 999999999722245699999999999999999999999877753 44566777778888888
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc-chhhhhhhhccccccccccc-cCCCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV-SYPVFKENCNQQYDQSAQYF-SGGHS 201 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 201 (625)
+..+..+.+.+++||+.+|+.+.+.|+.+.+|.+.+++++++|||++|..+.. .....++.+.........++ ....+
T Consensus 134 ~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g 213 (258)
T 3p7n_A 134 HKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASG 213 (258)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999543321 11122222222221111111 00011
Q ss_pred CCcccccccccccCchh
Q 048754 202 PLSQHQDICGILQLSDE 218 (625)
Q Consensus 202 ~~~~n~~~~~~~g~~~e 218 (625)
..|..++.+++++..
T Consensus 214 --~~~~eia~~l~~s~~ 228 (258)
T 3p7n_A 214 --LRNKEVAARLGLSEK 228 (258)
T ss_dssp --CCHHHHHHHHTCCHH
T ss_pred --CCHHHHHHHHCcCHH
Confidence 367888888888833
|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=129.28 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred eEEecCCCCccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccC
Q 048754 26 CSFEGGGGGGGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRR 105 (625)
Q Consensus 26 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~ 105 (625)
....+.+++++.|+++++.+.+++. ++++|+++|. +|+|+++|++|++++||+++|++|++...+.+
T Consensus 95 ~~~~DIT~~k~~e~~l~~~~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~-------- 161 (227)
T 3ewk_A 95 SIRRDITAQKEAEAQLARLKQAMDA--NSEMILLTDR---AGRIIYANPALCRFSGMAEGELLGQSPSILDS-------- 161 (227)
T ss_dssp EEEEECTTTTHHHHHHHHHHHHHHT--CCSEEEEECT---TSCEEEECHHHHHHHTCCTHHHHSSCGGGGBC--------
T ss_pred EEEEehhhHHHHHHHHHHHHHHHhc--CcCeEEEEcC---CCcEEEEchHHHHHhCCCHHHHcCCChhhccC--------
Confidence 4467889999888888777777666 8999999999 99999999999999999999999999887753
Q ss_pred CCCCChHHHHHHHHHHHhCcceEEEEEEEeecCc------ceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 106 HPLVDPVVVSEIRRCLEEGIEFQGELLNFKKDGT------PLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~------~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
|.........+++.+..++.+..++..++++|. .+|+.+++.|+.|.+|.+.+++++.+|
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 162 -PLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp -TTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred -CCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 446677788888899999999999999999997 799999999999999999999999887
|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-14 Score=123.34 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=101.8
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|...++|+|+++|+++++++||++++++|++...+.. |.........+...+..
T Consensus 37 ~~~~~~~--~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~---------~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 37 LVKALQM--AQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQG---------PETDPRAVDKIRNAITK 105 (166)
T ss_dssp HHHHHHH--TTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeC---------CCCCHHHHHHHHHHHhc
Confidence 3444445 899999999721249999999999999999999999999877753 34556667777788888
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+..+..+....+++|..+|+.+.+.|+.+.+|.+.+++++++|||++|+.+.
T Consensus 106 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~ 157 (166)
T 3ue6_A 106 GVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLL 157 (166)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHH
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHH
Confidence 8889899999999999999999999999999999999999999999987654
|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=113.02 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=91.9
Q ss_pred CCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEE
Q 048754 53 TPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGEL 131 (625)
Q Consensus 53 ~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 131 (625)
+.+++|..| . +++++++|+++++++||+++++.+ . ..+. +.+||++.+.....+.+.+..+..+..|+
T Consensus 2 a~~giw~~d~~---~~~~~~~n~~~~~l~G~~~~e~~~-~-~~~~------~~ihpdd~~~~~~~~~~~~~~~~~~~~e~ 70 (115)
T 3h9w_A 2 TKAIPWKINWQ---TMAFEYIGPQIEALLGWPQGSWKS-V-EDWA------TRMHPEDQEWVVNFCVKQSECGVDHEADY 70 (115)
T ss_dssp -CCEEEEEETT---TTEEEEECTHHHHHHCSCGGGCCB-H-HHHH------HSBCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEEcC---CCcEEEEChhHHHHhCCChHHccC-H-HHHH------HhcCHHHHHHHHHHHHHHHhcCCcccEEE
Confidence 567899999 5 788999999999999999999988 2 1111 12466666666677777788788888999
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+++++||+.+|+.....|+.+.+|.+.+++|+..|||++|..|+
T Consensus 71 r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 71 RALHRDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999999999998764
|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=110.55 Aligned_cols=117 Identities=32% Similarity=0.574 Sum_probs=97.8
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++|+++|...++|+|+++|+++++++|+++++++|++...+.. +.........+...+..+..+..+
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e 74 (128)
T 3t50_A 4 EFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQG---------HGTDPAHVRAIKSAIAAEKPIDID 74 (128)
T ss_dssp CCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcC---------CccCHHHHHHHHHHHHcCCCceeE
Confidence 45889999998622256999999999999999999999999877753 345566667777888888888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
.+..+++|..+|+.+.+.|+.+.+|.+.+++++++|||++|++|+.
T Consensus 75 ~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~ 120 (128)
T 3t50_A 75 IINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGS 120 (128)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC----
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhh
Confidence 9999999999999999999999999999999999999999988763
|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=105.89 Aligned_cols=112 Identities=36% Similarity=0.597 Sum_probs=96.4
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++++++|...++|+|+++|+++++++|+++++++|++...+.. +.........+.+.+..+..+..+
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T 4eet_B 4 EFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQG---------PETDQATVQKIRDAIRDQRETTVQ 74 (115)
T ss_dssp -CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcC---------CCCChHHHHHHHHHHHcCCCcceE
Confidence 44889999998643479999999999999999999999998776643 345566667778888888888889
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~ 171 (625)
.+..+++|+.+|+.+.+.|+.+.+|.+.+++++.+|||+++
T Consensus 75 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 75 LINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred EEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 99999999999999999999999999999999999999874
|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=108.50 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=76.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc----eE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE----FQ 128 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 128 (625)
++++|+++|. +|+|+++|+++++++||+++|++|++...+.++. ........+......+.. ..
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEP---------DRSRHDSYISRYRTTSDPHIIGIG 69 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTT---------HHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCch---------HHHHHHHHHHHHhcCCCcccCCCc
Confidence 6789999999 9999999999999999999999999887764311 111112223333333322 23
Q ss_pred EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 129 ~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+...+++||+.+|+.+++.|+.+. ....++++++|||++|++|+
T Consensus 70 ~~~~~~~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~ 114 (119)
T 2vv6_A 70 RIVTGKRRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQA 114 (119)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-------
T ss_pred eEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHH
Confidence 4667789999999999999999764 33568999999999998876
|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=108.96 Aligned_cols=114 Identities=16% Similarity=0.007 Sum_probs=89.8
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+++. ++++++++|. ++.++++|+++++++|+++++++|.. ...+ .||++.......+...+.
T Consensus 10 ~~~~~~--~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~---------~~~~d~~~~~~~~~~~~~ 75 (125)
T 3nja_A 10 HTAESD--AGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQR---------VHPDDRARVRRELDRHVL 75 (125)
T ss_dssp ---------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHH---------BCTTTHHHHHHHHHHHHH
T ss_pred HHHHHh--CCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhh---------cChhHHHHHHHHHHHHHh
Confidence 344444 8999999999 99999999999999999999998832 2222 346566666667777777
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
.+..+..+++..+++|+..|+.+...|+.+.+|.+.+++++++|||++|+
T Consensus 76 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 76 GDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp SCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred cCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 78888889999999999999999999999999999999999999999873
|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.5e-13 Score=111.73 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=85.3
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++|+ ++. +|+|+++|+++++++||++++++|++...+.+++ .........+.+.+..+.
T Consensus 7 ~~~~~--~~~~i~-~~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 72 (120)
T 3mqq_A 7 TAFHL--APIGLV-LSR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS--------DEFERIGERISPVMIAHG 72 (120)
T ss_dssp HHHHH--CSSEEE-EEE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH--------HHHHHHHHHHHHHHHHHS
T ss_pred HHHhc--CCceEE-Eec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh--------hhHHHHHHHHHHHHhcCC
Confidence 44455 889996 477 9999999999999999999999999877664311 011223344556666777
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+..|.+.+++||+.+|+.+...++ +.++...+++++++|||++|++
T Consensus 73 ~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 8888999999999999999999998 5556566789999999999865
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-12 Score=125.21 Aligned_cols=116 Identities=34% Similarity=0.583 Sum_probs=102.0
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGE 130 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 130 (625)
+.++++|+++|...++|+|+++|+++++++||+++|++|++...+.. |.........+.+.+..+..+..+
T Consensus 18 ~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~e 88 (332)
T 2wkq_A 18 ERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQG---------PETDRATVRKIRDAIDNQTEVTVQ 88 (332)
T ss_dssp GGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcC---------CCCCHHHHHHHHHHHHcCCeeEEE
Confidence 34899999998644479999999999999999999999999877743 445666777788888888899999
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.+.+++||+.+|+.+.+.|+.+.+|.+.+++++.+|||++++.++
T Consensus 89 ~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 89 LINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHH
T ss_pred EEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhh
Confidence 999999999999999999999999999999999999999987654
|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=106.60 Aligned_cols=106 Identities=22% Similarity=0.214 Sum_probs=81.2
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+.+++. ++++|+++|. +|+|+++|+++++++||+++|++|++...+..+ ..........+.+.
T Consensus 12 ~~~~l~e~--~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~----------~~~~~~~~~~~~~~ 76 (117)
T 2r78_A 12 AYRALFEH--AIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRG----------VDSGWAAASLARIV 76 (117)
T ss_dssp HHHHHHHH--CSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTC----------STTSHHHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCc----------cchhHHHHHHHHHH
Confidence 34555666 9999999999 999999999999999999999999986655321 11122333445566
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+..+..+.+.+++||+.+|+.+++.|+. +|. ++++++|||
T Consensus 77 ~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 77 GGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred cCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 67777888899999999999999999886 455 678899997
|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=103.23 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=95.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++++++|. +|+++++|+++++++|+++++++|++...+.. +.........+.+.+..
T Consensus 9 ~~~~~~~--~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~ 74 (124)
T 3lyx_A 9 RAKAFDY--VFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHV---------PGDTEHITSEVISAVEN 74 (124)
T ss_dssp HHHGGGT--CSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSC---------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHhh--cCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcC---------cchhhHHHHHHHHHHHc
Confidence 3445555 8999999999 99999999999999999999999998775532 22333445567777788
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccc
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~ 172 (625)
+..+..+.....++|..+|+.+...|+.+.+|.+.+++++.+|||++|+
T Consensus 75 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 75 QGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp TSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred CCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 8888888888999999999999999999999999999999999999875
|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=101.29 Aligned_cols=108 Identities=14% Similarity=0.169 Sum_probs=87.6
Q ss_pred CCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cceEEE
Q 048754 52 TTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEFQGE 130 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e 130 (625)
.+++.|++.|. +|+++++|+++++++||+++|++|++..++. ||++.......+.+.+..+ .....+
T Consensus 11 ~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~---------~p~d~~~~~~~~~~~~~~~~~~~~~e 78 (121)
T 2kdk_A 11 KPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYF---------HQDDHNNLTDKHKAVLQSKEKILTDS 78 (121)
T ss_dssp CSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTB---------CSSSHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHee---------CHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 38899999999 9999999999999999999999999877664 3555554545555555543 345678
Q ss_pred EEEEeecCcceeEEEEEEEeeCCC-CCEEEEEEEEEeeeccc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDD-GTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~-g~~~~~i~~~~Dit~~~ 171 (625)
++++++||+.+|+.+...|+.+.. +.+..++++.+||++.+
T Consensus 79 ~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 79 YKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 899999999999999999999875 46777889999999875
|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=113.54 Aligned_cols=120 Identities=34% Similarity=0.531 Sum_probs=102.8
Q ss_pred eecccccccCCCCeeEEEecCCCCCC---CEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDF---PIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIR 118 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (625)
++.+.+++. ++++|+++|. +| +|+++|+++++++|++.++++|+....+.. +.........+.
T Consensus 25 ~~~~~i~~~--~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~ 90 (162)
T 3sw1_A 25 QLLQSMVDA--SNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQG---------DDRDQLGRARIR 90 (162)
T ss_dssp HHHHHHHHT--CSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTT---------TCCCCHHHHHHH
T ss_pred HHHHHHHhh--ccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecC---------CCcCHHHHHHHH
Confidence 344555555 8999999999 99 999999999999999999999998877653 334555666777
Q ss_pred HHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 119 RCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 119 ~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+..+..+..+....+++|..+|+.+.+.|+.+.+|.+.+++++++|||+++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~ 147 (162)
T 3sw1_A 91 KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELER 147 (162)
T ss_dssp HHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHH
T ss_pred HHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHH
Confidence 788888888888888899999999999999999999999999999999999988765
|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=101.28 Aligned_cols=117 Identities=41% Similarity=0.708 Sum_probs=97.1
Q ss_pred ccccccCCCCeeEEEec---CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVAD---AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+.+++. ++++++++| . +|.++++|+++++++|++.++++|++...+.. +.........+...+
T Consensus 9 ~~~~~~--~~~~i~~~d~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~ 74 (130)
T 2z6d_A 9 KTALST--LQQTFVVSDATQP---HCPIVYASSGFFTMTGYSSKEIVGRNCRFLQG---------PDTDKNEVAKIRDCV 74 (130)
T ss_dssp HHHHHH--TTCEEEEEETTST---TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHH
T ss_pred HHHHHh--cccceeeeeccCC---CCcEEEecHHHHHHhCcCHHHHcCCChhhccC---------CCCCchHHHHHHHHH
Confidence 344555 899999999 7 99999999999999999999999998877643 334555666677777
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+..+..+....+++|...|+.+.+.|+.+.+|.+.+++++.+|||+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 75 KNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 788888888888889999999999999999999999999999999999987654
|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=107.68 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=78.1
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc---
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE--- 126 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 126 (625)
++.++++|+++|. +|+|+++|+++++++||+++|++|++...+.++ .........+......+..
T Consensus 22 ~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~ 89 (130)
T 1d06_A 22 LDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPE---------PYRHEHDGYLQRYMATGEKRII 89 (130)
T ss_dssp HTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCT---------THHHHHHHHHHHHHHHCCCSST
T ss_pred HhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCc---------hhHHHHHHHHHHHHhcCCcccc
Confidence 4449999999999 999999999999999999999999988777531 1112222223333333322
Q ss_pred -eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 127 -FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 127 -~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
...+...+++||+.+|+.+++.|+.+. ....++++++|||
T Consensus 90 ~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 90 GIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp TSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred CCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 234677889999999999999999753 3456889999997
|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=111.85 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=85.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++++ .........+.+++..
T Consensus 24 l~~il~~--~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p----------~~~~~~~~~l~~vl~~ 88 (152)
T 3mxq_A 24 LSELLDQ--LSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFP----------ESADYLKRKIDTALVI 88 (152)
T ss_dssp HHHHHHH--HCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcC----------ChHHHHHHHHHHHHhc
Confidence 3556666 8999999999 99999999999999999999999999888864 3122334556677777
Q ss_pred CcceEEEE---------E---EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 124 GIEFQGEL---------L---NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 124 ~~~~~~e~---------~---~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
|.+..... . ...++|...+..+++.|+.|.+|.+.+++.+++|||+++.+
T Consensus 89 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 89 ESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp TSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred CCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 76533211 1 12346677888999999999999999999999999998754
|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.7e-12 Score=113.22 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=90.3
Q ss_pred ecccccccCCCCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
+.+.+++. ++++|+++| . +|+|+++|+++++++|++ +++|++..+++++ .........+.+.+
T Consensus 38 ~l~~l~~~--~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~---------~~~~~~~~~~~~~~ 101 (185)
T 3kx0_X 38 DVRRIFEH--IPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPE---------LEGQQIYEMLDRVY 101 (185)
T ss_dssp HHHHHHHH--CSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTT---------SCSSSSHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCc---------hhhhhHHHHHHHHH
Confidence 34455556 899999999 9 999999999999999999 8999998777542 22333445566777
Q ss_pred HhCcceEEEEE-E--Eeec--CcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 122 EEGIEFQGELL-N--FKKD--GTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 122 ~~~~~~~~e~~-~--~~~d--G~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
..+.....+.. . .+++ |...|+.+.+.|+.+.+|.+.+++++++|||++|++|+.
T Consensus 102 ~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 102 QTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 77777655422 2 2222 778999999999999999999999999999999998774
|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=100.04 Aligned_cols=117 Identities=36% Similarity=0.603 Sum_probs=98.6
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|..+++|.++++|+++++++|+++++++|++...+.. |.........+...+..+.
T Consensus 6 ~~~~~--~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 74 (146)
T 2v0u_A 6 TTLER--IEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQG---------PETDRATVRKIRDAIDNQT 74 (146)
T ss_dssp CTGGG--SSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHTTC
T ss_pred HHHhc--CCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcC---------CcCChHHHHHHHHHHhcCC
Confidence 44444 889999988633368999999999999999999999998877643 3455566677777888888
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeeccccc
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~ 173 (625)
.+..+....+++|..+|+.+...|+.+.+|.+.+++++.+|||++++.
T Consensus 75 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 75 EVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred CcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHH
Confidence 888888889999999999999999999999999999999999999873
|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-12 Score=110.54 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=91.2
Q ss_pred ecccccccCCCCeeEEEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
..+.+++. ++++|+++| . +|+|+++|+++++++|++ +++|++..+++++ .........+.+.+
T Consensus 18 ~~~~~~~~--~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~---------~~~~~~~~~~~~~~ 81 (158)
T 3k3c_A 18 DVRRIFEH--IPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPE---------LEGQQIYEMLDRVY 81 (158)
T ss_dssp HHHHHHHH--CSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGG---------GGGTTHHHHHHHHH
T ss_pred HHHHHHhc--CCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCc---------hhHHHHHHHHHHHH
Confidence 34455666 899999999 8 999999999999999999 8999988777542 22333455666777
Q ss_pred HhCcceEEEEE-E--Eee-c-CcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 122 EEGIEFQGELL-N--FKK-D-GTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 122 ~~~~~~~~e~~-~--~~~-d-G~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
..+.+...+.. . .+. + |...|+.+.+.|+.+.+|.+.+++++++|||++|++|+
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~ 140 (158)
T 3k3c_A 82 QTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQ 140 (158)
T ss_dssp HHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHH
T ss_pred HhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHH
Confidence 77777554432 2 221 2 66789999999999999999999999999999998766
|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=98.43 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=84.1
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++++|. +|+++++|+++++++|+++++++|++..++.+ .........+.+.+ .++
T Consensus 7 ~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~-~~~ 70 (114)
T 3luq_A 7 LFTEH--APAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIFP----------EIGEEWKSVHRRGL-AGE 70 (114)
T ss_dssp HHHHT--CSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHCT----------TCCHHHHHHHHHHH-TTC
T ss_pred HHHhc--CCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHCC----------ccHHHHHHHHHHHh-cCC
Confidence 44444 8999999999 99999999999999999999999998877752 23344333444444 455
Q ss_pred ceEEEE-EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EFQGEL-LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~~~e~-~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
....+. ...+++|+..|+.+...|+.+.+|.+.+++++++|||
T Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 71 VIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp CEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 544443 7788899999999999999999999999999999997
|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=92.88 Aligned_cols=107 Identities=27% Similarity=0.434 Sum_probs=87.7
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
.+|+++|..+.+|+|+++|+++++++|+++++++|++ ...+.. +.........+.+.+..+..+..+..
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG---------PCTQRRAAAQIAQALLGAEERKVEIA 72 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCC---------TTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccC---------CcCCHHHHHHHHHHHhcCCCceEEEE
Confidence 5788888733359999999999999999999999987 333322 23344455667777777888888888
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
..+++|..+|+.+...|+.+.+|.+.+++++.+|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 88999999999999999999999999999999999975
|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=101.96 Aligned_cols=111 Identities=12% Similarity=-0.019 Sum_probs=93.0
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. ++++++.+|. ++.++++|+++++++||+++++.+.....+. ..||++.+.....+.+.+..+.
T Consensus 8 ~l~~~--~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~-------~i~p~d~~~~~~~~~~~~~~~~ 75 (118)
T 3icy_A 8 ALVDN--IPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLS-------MIHHDDRHMLSNAYSKLREAKH 75 (118)
T ss_dssp HHHTT--CCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGG-------GBCGGGHHHHHHHHHHHHHSCC
T ss_pred HHHhc--CCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHH-------HcCHHHHHHHHHHHHHHHhcCC
Confidence 34444 8999999999 9999999999999999999998776532221 1456666666677777778888
Q ss_pred ceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+..++++.+++|+..|+.....|+.+.+|.+.+++|+++|||
T Consensus 76 ~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 76 SLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8888999999999999999999999999999999999999997
|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=100.23 Aligned_cols=113 Identities=36% Similarity=0.646 Sum_probs=88.0
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcc--cccCCCCCChHHHHHHHHHHHhCcceEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPR--AQRRHPLVDPVVVSEIRRCLEEGIEFQGEL 131 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 131 (625)
+++|+++|..+.+|+|+++|+++++++||++++++|++...+..++.. ..+.++.........+.+.+..+..+..+.
T Consensus 35 ~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 114 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEV 114 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEE
Confidence 489999982222999999999999999999999999988777542100 000001125556667777788888888899
Q ss_pred EEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
+..++||+.+|+.+.+.|+.+.+|.+.+++++.+|
T Consensus 115 ~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 115 VNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 99999999999999999999999999999988765
|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=100.42 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=85.3
Q ss_pred ccccceeeecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHH
Q 048754 35 GGDDTELSLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVV 114 (625)
Q Consensus 35 ~~~e~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 114 (625)
++.+.++++.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++.+.. ....
T Consensus 6 ~~~e~~~~~~~~~~~~--~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~----------~~~~- 69 (118)
T 3olo_A 6 IQSELEFKFAHYLINN--AVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF----------ALHD- 69 (118)
T ss_dssp -CHHHHHHHHHHHHHH--CSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG----------GGSC-
T ss_pred HHHHHHHHHHHHHHhc--CCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc----------CHHH-
Confidence 3344455555566666 9999999999 9999999999999999999999999887775321 1111
Q ss_pred HHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 115 SEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+.+..+..+..+.+..+++|+.+|+.+...++.+.. ...++++++|||
T Consensus 70 ---~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 70 ---WEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp ---HHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred ---HHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 2334445667788888999999999999999987643 346778999997
|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=98.25 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 51 PTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+.++++++++|. + |+++++|+++++++|+++++++|.....+. ..||++.......+.. +..+..+..
T Consensus 18 ~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~ 86 (125)
T 3eeh_A 18 EATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLN-------GIHPEDRELMKDTMQS-LMDGESADV 86 (125)
T ss_dssp SCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGG-------GBCHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHH-------hcCHHHHHHHHHHHHH-HHcCCCccE
Confidence 449999999999 8 999999999999999999999987632111 1223333333333333 567777888
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
+.+..+++|+..|+.+...|+.+.+|.+.+++++.+|||
T Consensus 87 e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 87 ECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 888899999999999999999999999999999999997
|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=95.60 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=78.5
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
++++++++|. +|+|+++|+++++++|+++++++|++..++..+ .........+...+. +.....+.+
T Consensus 8 ~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (126)
T 3mjq_A 8 IEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSA---------GKMAEGEKILAELFA-GKKESLPLS 74 (126)
T ss_dssp CSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCT---------TCHHHHHHHHHHHHH-TCCSEEEEE
T ss_pred CCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCc---------hhHHHHHHHHHHHHh-CCCceeEEE
Confidence 8999999999 999999999999999999999999987777532 222333334444444 344467788
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCCc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNHV 176 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~~ 176 (625)
..+++|..+|+.+...++.. +...+++++++|||+++++++.
T Consensus 75 ~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~ 116 (126)
T 3mjq_A 75 LEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSP 116 (126)
T ss_dssp EECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC--------
T ss_pred EEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcc
Confidence 88899999999999887664 3356789999999999988764
|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=91.46 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=90.5
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCC--CcccccCCcccccCCCCCChHHHHHHHHHHHhCcce
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRN--CRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF 127 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (625)
++.++++++++|...++|+|+++|+++++++|++.++++|++ ...+.. +.........+.+.+..+..+
T Consensus 25 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 25 FEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG---------PRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCC---------TTCCHHHHHHHHHHTTCSSCE
T ss_pred HhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCC---------cccchhHHHHHHHHHhhcCCc
Confidence 445889999998522258999999999999999999999987 444432 234444455666667777778
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
..+....+++|..+|+.+.+.|+.+.+|.+.+++++.+|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 8888888999999999999999999999999999999999975
|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=114.38 Aligned_cols=109 Identities=9% Similarity=-0.046 Sum_probs=93.7
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
....++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..+.....+++
T Consensus 250 ~~~f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~i---------HpdD~~~~~~~~~~~l~~g~~~~~eyR 317 (361)
T 4f3l_A 250 NEEFTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYY---------HVDDLENLAKCHEHLMQYGKGKSCYYR 317 (361)
T ss_dssp CCEEEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGB---------CHHHHHHHHHHHHHHHHHSEEECCCEE
T ss_pred cceeEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 3456777788 9999999999999999999999999887774 566666666677777778877777899
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeeccccc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKIDL 173 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~~ 173 (625)
++++||..+|+.....++.+. +|.+..++++.+|||+++..
T Consensus 318 ~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 318 FLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHH
T ss_pred EEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhh
Confidence 999999999999999999987 79999999999999998643
|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=95.96 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=76.6
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++..++ ........+......
T Consensus 9 l~~i~~~--~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~---------~~~~~~~~~~~~~~~ 74 (129)
T 3mfx_A 9 IELFIQH--LTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEH---------HQARYDNLLSHDVQL 74 (129)
T ss_dssp HHHHHTT--CSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTT---------CCGGGGCTTC-----
T ss_pred HHHHHhc--CCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChH---------hHHHHHHHHHHHHhc
Confidence 3445555 8999999999 9999999999999999999999999988886532 111111111111111
Q ss_pred C-------cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 124 G-------IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 124 ~-------~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
+ .....|+..+++||+.+|+.+++.|+.++ +. .++++++|+...
T Consensus 75 ~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~~-~~--~~v~~~~~~~~~ 125 (129)
T 3mfx_A 75 GTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGH-EP--MFVMVMHDLEHH 125 (129)
T ss_dssp -----CCSCEEEEEEEEECTTSCEEEEEEEEEEECSS-SC--EEEEEEEEC---
T ss_pred CcccccccCCCceEEEEEcCCCCEEEEEEEEEEecCC-Cc--EEEEEEechhhh
Confidence 1 12456888899999999999999999832 22 478888887643
|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-10 Score=97.39 Aligned_cols=105 Identities=23% Similarity=0.149 Sum_probs=71.9
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhc--CCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVL--GRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
+.+++. ++++|+++|. +|+|+++|+++++++||+++|++ |++...+. | +.......+ ....
T Consensus 20 ~~l~e~--~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~----------~-~~~~~~~~~-~~~~ 82 (126)
T 3bwl_A 20 EALFEN--SPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLM----------F-DAEDVQTQL-SGFS 82 (126)
T ss_dssp HHHHHH--CSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTT----------C-CHHHHHHHH-HTCC
T ss_pred HHHHhh--CCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhcc----------C-CHHHHHHHH-HHHh
Confidence 345555 9999999999 99999999999999999999995 55554443 1 111111111 1111
Q ss_pred hCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 123 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.+.....+.+..++||+.+|+.+...++.+ +|. ..++++++|||
T Consensus 83 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~-~~~~~~~~DIT 126 (126)
T 3bwl_A 83 VDERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp TTCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCCcceEEEEEeCCCCEEEEEEEeEEEec-CCc-EEEEEEEEeCC
Confidence 233344566778999999999988887743 344 35788999997
|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-10 Score=97.98 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=76.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++++++|. +|.|+++|+++++++|++.++++|++...+..+ .........+......
T Consensus 42 ~~~~l~~--~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~ 107 (167)
T 1v9y_A 42 FFPALEQ--NMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPR---------DLRPAHPEYIRHNREG 107 (167)
T ss_dssp HHHHHHT--CSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCG---------GGTTTHHHHHHHHHC-
T ss_pred HHHHHHh--CCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCc---------cccchHHHHHHHHhhc
Confidence 3344444 8999999999 999999999999999999999999988777532 1222222333333332
Q ss_pred Ccc----eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 124 GIE----FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 124 ~~~----~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.. +..+.....++|..+|+.+...|+ +.+|.+ .++++++|||+++++++
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~ 161 (167)
T 1v9y_A 108 GKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKE 161 (167)
T ss_dssp ---------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC---------
T ss_pred CCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHH
Confidence 222 344677788899999999999998 445655 48999999999987765
|
| >3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-10 Score=105.52 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.4
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHh------------CCCchhhcCCCCcccccCCcccccCCCCCCh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFT------------GYRADEVLGRNCRFLQYRDPRAQRRHPLVDP 111 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 111 (625)
.+.+++. .+++|+++|. +|+|+++|+++++++ ||++++++|++...+.. .+
T Consensus 24 l~~iLd~--~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~------------~~ 86 (233)
T 3vol_A 24 IKSALDN--VSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK------------NP 86 (233)
T ss_dssp HHHHHTT--SSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS------------SH
T ss_pred HHHHHhc--CCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC------------CH
Confidence 3444444 8999999999 999999999999998 89999999999887742 22
Q ss_pred HHHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 112 VVVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....+.+.+. ..+..++. .+|. |+.+++.|+.|.+|.+.+++++++|||+++++++
T Consensus 87 ~~~~~~~~~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ 143 (233)
T 3vol_A 87 AHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQ 143 (233)
T ss_dssp HHHHHHHHTCC--SCEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHhcc--cceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHH
Confidence 33333333221 23333332 3554 6789999999999999999999999999987765
|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.6e-10 Score=111.08 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=86.6
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-eEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-FQGEL 131 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 131 (625)
..+.++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..++. ...++
T Consensus 277 ~~~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~i---------HpdD~~~~~~~~~~~l~~~~~~~~~ey 344 (387)
T 4f3l_B 277 SMEYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYF---------HQDDIGHLAECHRQVLQTREKITTNCY 344 (387)
T ss_dssp CCEEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTB---------CHHHHHHHHHHHHHHTTCSSCEECCCE
T ss_pred CceEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHee---------CHHHHHHHHHHHHHHHhcCCCeeeEEE
Confidence 4567777888 9999999999999999999999999887774 565655555555566655443 45689
Q ss_pred EEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
+++++||..+|+.....++.+. .|.+..++++.+|||++|+
T Consensus 345 R~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 345 KFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999999999999999887 7899999999999999974
|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=88.70 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH-hCcceEE
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE-EGIEFQG 129 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 129 (625)
+++++.|+++|. +|+|+++|+++++++||+++|++|++..++. ||++.+.... .+. .......
T Consensus 6 e~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~i---------hp~D~~~~~~----~~~~~~~~~~~ 69 (111)
T 2vlg_A 6 QTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFL---------HEEDQFLVES----YFYNEHHLMPC 69 (111)
T ss_dssp ---CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHH----HHHCSCCSSCE
T ss_pred hcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeE---------CHhHHHHHHH----HHhccCCCccE
Confidence 348899999999 9999999999999999999999999887774 4544443322 222 2333456
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCC
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDG 155 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g 155 (625)
+.+++++||+.+|+++++.++.+..+
T Consensus 70 e~r~~~kdG~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 70 TFRFIKKDHTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp EEEEECTTSCEEEEEEEEEEC-----
T ss_pred EEEEEcCCCCEEEEEEEEEEEecccC
Confidence 78889999999999999999987654
|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-09 Score=87.12 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=79.1
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE 123 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (625)
.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++.++ .........+.+.+..
T Consensus 14 ~~~il~~--~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~---------~~~~~~~~~~~~~~~~ 79 (118)
T 3fg8_A 14 RENLYFQ--GGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPE---------TQGSYFDALCRKVLAT 79 (118)
T ss_dssp CCCSSSC--TTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGG---------GTTSHHHHHHHHHHHH
T ss_pred HHHHHhh--CCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCc---------cchHHHHHHHHHHHHc
Confidence 4455555 9999999999 999999999999999999999999998877542 2233455666777778
Q ss_pred CcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 124 GIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 124 ~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
+.....++.....+| .|+.+.+.|+.+ | ++++++|||++
T Consensus 80 ~~~~~~~~~~~~~~g--~~~~~~~~p~~~--g----~v~~~~DITer 118 (118)
T 3fg8_A 80 GREQQTRVDSLYSPG--MTIEVTAAADSG--A----LVVHFRDVTAE 118 (118)
T ss_dssp CCCEEEEEECSSSTT--CEEEEEEEEETT--E----EEEEEEECSCC
T ss_pred CCceEEEEEEEcCCC--eEEEEEEEEcCC--c----EEEEEEeccCC
Confidence 887776432222355 578888888753 2 67889999975
|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-09 Score=90.97 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=86.9
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehH---HHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKV---FEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (625)
.+++++. .+++|+++|. +|+|+++|++ +++++| ..++++|++..++.+ .........+.+.
T Consensus 21 l~~IL~~--~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~----------~~~~~~v~~i~~~ 84 (151)
T 2qkp_A 21 ANLILNH--LPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHP----------PKVLDKVKKVFEL 84 (151)
T ss_dssp HHHHHHH--SSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSC----------HHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCC----------HHHHHHHHHHHHH
Confidence 3445555 9999999999 9999999999 999999 567899999877742 1122234556666
Q ss_pred HHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
+.++.....+..... .+....+.++..|+.|++|.+.|++.+++|||+.+++++
T Consensus 85 l~~g~~~~~~~~~~~-~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~ 138 (151)
T 2qkp_A 85 LRNGQRDKVNMWFQS-ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp HHTTSBSEEEEEEEE-TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGG
T ss_pred HHcCCccEEEEEEec-CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhh
Confidence 777776666555432 322346788899999989999999999999999887765
|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-09 Score=86.42 Aligned_cols=102 Identities=20% Similarity=0.251 Sum_probs=73.2
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhC------------CCchhhcCCCCcccccCCcccccCCCCCChH
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTG------------YRADEVLGRNCRFLQYRDPRAQRRHPLVDPV 112 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~ 112 (625)
+.+++. .+++|+++|. +|+|+++|+++++++| |++++++|++...+.. .+.
T Consensus 8 ~~il~~--~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~------------~~~ 70 (121)
T 4hi4_A 8 ASALDN--VSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK------------NPA 70 (121)
T ss_dssp HHHHTT--SSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS------------SHH
T ss_pred HHHHhc--CCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC------------CHH
Confidence 344444 8999999999 9999999999999995 8999999998877742 222
Q ss_pred HHHHHHHHHHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 113 VVSEIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
....+.+... ..+..++. .+|. ++.+.+.|+.+.+|.+.+++.+++|||++
T Consensus 71 ~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 71 HQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HHHHHHHHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred HHHHHHhCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 2222222221 23333332 2454 55788999999999999999999999974
|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=99.24 Aligned_cols=160 Identities=12% Similarity=0.097 Sum_probs=101.4
Q ss_pred EEec-CCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcce---------
Q 048754 58 VVAD-AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEF--------- 127 (625)
Q Consensus 58 ~~~d-~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 127 (625)
++++ . +|+|+++|+++.+++||+++|++|++..++.+ |++ ...+...+..+.++
T Consensus 7 ~vv~~~---~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ih---------p~D----~~~f~~~L~~gl~~~~~~~~~~~ 70 (339)
T 3rty_A 7 CVISMH---DGIVLYTTPSITDVLGYPRDMWLGRSFIDFVH---------LKD----RATFASQITTGIPIAESRGSVPK 70 (339)
T ss_dssp EEEETT---TCBEEEECTTHHHHHCCCTTSSTTSBGGGGBC---------HHH----HHHHHHHHHTTSCCC--------
T ss_pred EEEECC---CcEEEEEChHHHHHcCCCHHHHCCCcHHHhcC---------HHH----HHHHHHHHhcCCCCCccccCCCC
Confidence 4455 6 99999999999999999999999999888853 333 33345555444322
Q ss_pred ---EEEEEEEe----------------ecCcceeEEEEEEEeeCC---------CCCEEEEEEEEEeeecccccCCcchh
Q 048754 128 ---QGELLNFK----------------KDGTPLVNRLRLAPIRDD---------DGTVTHIIGIQIFSEAKIDLNHVSYP 179 (625)
Q Consensus 128 ---~~e~~~~~----------------~dG~~~~~~~~~~~~~d~---------~g~~~~~i~~~~Dit~~~~~e~~~~~ 179 (625)
..-.++.+ +...++|+.....++.++ .|....++.++++++...+...
T Consensus 71 ~~rsffcR~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~---- 146 (339)
T 3rty_A 71 DAKSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPD---- 146 (339)
T ss_dssp --CCEEEEEEECCC-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTT----
T ss_pred CCceEEEEEEeccCCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccc----
Confidence 01111111 111233444444555444 4566677888888875432211
Q ss_pred hhhhhhcccccccccc--ccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 180 VFKENCNQQYDQSAQY--FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 180 ~~~~~~~~~~~~~~~~--~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
+ +.. ......+ .+.++.++|+|+++.+++||+ +|++|..+++++||+|+..+....++
T Consensus 147 ---e-~~~-~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~ 207 (339)
T 3rty_A 147 ---E-ILS-QKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYET 207 (339)
T ss_dssp ---B-BCC-SSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred ---h-hhc-cCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHH
Confidence 0 100 1111122 256667779999999999999 99999999999999998877544433
|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.4e-09 Score=107.02 Aligned_cols=169 Identities=11% Similarity=0.080 Sum_probs=98.0
Q ss_pred CCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH---------
Q 048754 52 TTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL--------- 121 (625)
Q Consensus 52 ~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 121 (625)
+.+..+++++. + |+|+|+|++++.++||+++|++|++..++. ||++...+.+.+....
T Consensus 94 ~~~gfi~v~~~---~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~i---------hp~D~~~~~~~L~~~~~~p~~~~~~ 161 (387)
T 4f3l_B 94 AADGFLFVVGC---DRGKILFVSESVFKILNYSQNDLIGQSLFDYL---------HPKDIAKVKEQLSSSDTAPRERLID 161 (387)
T ss_dssp TCCSEEEEEET---TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHHHHSCC----------
T ss_pred cCCCEEEEEec---CCeEEEEEchhhHHHcCCCHHHHCCCcHHHhc---------CCCCHHHHHHHhcccccCccccccC
Confidence 37788888887 7 999999999999999999999999988885 4555544443332111
Q ss_pred -HhCc-------------------ceEEEEEEEe-------------------ecCcceeEEEEEEEeeC----------
Q 048754 122 -EEGI-------------------EFQGELLNFK-------------------KDGTPLVNRLRLAPIRD---------- 152 (625)
Q Consensus 122 -~~~~-------------------~~~~e~~~~~-------------------~dG~~~~~~~~~~~~~d---------- 152 (625)
.++. .+..+++... ++....++.+.......
T Consensus 162 ~~tg~~~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~ 241 (387)
T 4f3l_B 162 AKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDED 241 (387)
T ss_dssp ----------------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------
T ss_pred cccCCccCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccc
Confidence 1111 1111221111 11222233332211110
Q ss_pred -----CCCCEEEEEEEEEeeecccccCCcchhhhhhhhcccccccccc--ccCCCCCCcccccccccccCc-hhHHHHhh
Q 048754 153 -----DDGTVTHIIGIQIFSEAKIDLNHVSYPVFKENCNQQYDQSAQY--FSGGHSPLSQHQDICGILQLS-DEVLAHNI 224 (625)
Q Consensus 153 -----~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~ 224 (625)
..+...+++++++++........ ..+ +. ......+ .+.+..++|+|++++.++||+ +|++|..+
T Consensus 242 ~~~~~~~~~~~~lvai~r~~~~~~~~~~-----~~e-i~--~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~ 313 (387)
T 4f3l_B 242 NEPDNEGCNLSCLVAIGRLHSHMVPQPA-----NGE-IR--VKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC 313 (387)
T ss_dssp --------CCCEEEEEEEECCCSCCSCC-----CSS-SC--BCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBG
T ss_pred cccccCCCcceEEEEEEecccCCCCCCc-----ccc-cc--cCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcH
Confidence 01123356777777553321100 000 00 0111112 256677779999999999999 89999999
Q ss_pred hcccCchhhhhHHhHH
Q 048754 225 LSRLTPRDVASIGSVC 240 (625)
Q Consensus 225 ~~~~~~~~~~~~~~~~ 240 (625)
.+++||+|+..+....
T Consensus 314 ~~~iHpdD~~~~~~~~ 329 (387)
T 4f3l_B 314 YEYFHQDDIGHLAECH 329 (387)
T ss_dssp GGTBCHHHHHHHHHHH
T ss_pred HHeeCHHHHHHHHHHH
Confidence 9999999988764433
|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=87.74 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=72.4
Q ss_pred eecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHH-HHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVV-SEIRRC 120 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 120 (625)
++.+.+++. ++++|+++|. +|+|+++|+++++++|+++++++|++..++.+ . ...... ......
T Consensus 19 ~~~~~i~~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~-~---------~~~~~~~~~~~~~ 83 (125)
T 3fc7_A 19 KKFESLVSD--SPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMD-S---------EAANQRLEAGKSA 83 (125)
T ss_dssp -------CC--SCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSC-H---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCC-H---------HHHHHHHHHHHHH
Confidence 344455555 9999999999 99999999999999999999999999887752 1 111122 222344
Q ss_pred HHhCcceEEEEEEEeecCc-ceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 121 LEEGIEFQGELLNFKKDGT-PLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~-~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
...+... ..++|. ..|+.+.+.|+.+. |...+++++++|||
T Consensus 84 ~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 84 VENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred hcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 4444433 233455 78999999998765 55678899999997
|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-09 Score=87.44 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH-HHh-Ccce--
Q 048754 53 TPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-LEE-GIEF-- 127 (625)
Q Consensus 53 ~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-- 127 (625)
.+++|+++|. + |+|+++|+++++++||+++|++|++..++.++ . .......+... +.. +...
T Consensus 7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~---------~-~~~~~~~~~~~~~~~~~~~~~~ 73 (114)
T 1ll8_A 7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLR---------S-DSDVVEALSEEHMEADGHAAVV 73 (114)
T ss_dssp TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSC---------T-TTHHHHHTTSSTTSSSSCSSCC
T ss_pred CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCc---------c-hhHHHHHHHHHhhccCCcceec
Confidence 5579999999 9 99999999999999999999999998877542 1 12222222111 111 1111
Q ss_pred -EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 128 -QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 128 -~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
..+...+++||+.+|+.+++.|+.+..+ ..++++++|++
T Consensus 74 ~~~~~~~~~~dG~~~~v~~~~~~~~~~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 74 FGTVVDIISRSGEKIPVSVWMKRMRQERR--LCCVVVLEPVE 113 (114)
T ss_dssp CSSSEEECCTTCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred cCcEEEEEecCCCEEEEEEEEEeeccCCc--cEEEEEEeecC
Confidence 2345677899999999999999986554 35788888876
|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-09 Score=103.10 Aligned_cols=167 Identities=11% Similarity=-0.042 Sum_probs=99.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc-------
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI------- 125 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (625)
.+..+++++. +|+|+++|+++.+++||+++|++|++..++. ||++.......+......+.
T Consensus 95 ~~~~i~v~~~---~G~i~yvs~~~~~~lGy~~~el~g~~~~~~i---------hp~D~~~~~~~l~~~~~~~~~~~~~~~ 162 (361)
T 4f3l_A 95 LDGFFLAIMT---DGSIIYVSESVTSLLEHLPSDLVDQSIFNFI---------PEGEHSEVYKILSTHLLESDSLTPEYL 162 (361)
T ss_dssp TTEEEEEEET---TSBEEEECTTHHHHHCCCHHHHTTSBGGGGS---------CGGGHHHHHHHHHHCCCCCCSSSCGGG
T ss_pred cCceEEEEcC---CccEEEEechhhhhcCCCHHHhcCCcHHHhc---------CHHHHHHHHHHhccCCCCCCCCCcccc
Confidence 7888899999 9999999999999999999999999988774 45555554444443221111
Q ss_pred ----ceEEEEEEEee------cCcceeEEEEEEEee---------------------CCCCCEEEEEEEEEeeecccccC
Q 048754 126 ----EFQGELLNFKK------DGTPLVNRLRLAPIR---------------------DDDGTVTHIIGIQIFSEAKIDLN 174 (625)
Q Consensus 126 ----~~~~e~~~~~~------dG~~~~~~~~~~~~~---------------------d~~g~~~~~i~~~~Dit~~~~~e 174 (625)
......++.+. .....++........ ...+...+++++.++++.+...+
T Consensus 163 ~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e 242 (361)
T 4f3l_A 163 KSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKE 242 (361)
T ss_dssp CGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEE
T ss_pred cccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccc
Confidence 01111111111 111122222111110 11122345666777766553221
Q ss_pred Ccchhhhhhhhccccccccc--cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHH
Q 048754 175 HVSYPVFKENCNQQYDQSAQ--YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVC 240 (625)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~ 240 (625)
.. . +. ...... ..+.+..++|+|++++.++||+ +|++|..+.+++||+|...+....
T Consensus 243 ~~---~----i~--~~~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~ 302 (361)
T 4f3l_A 243 MC---T----VE--EPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH 302 (361)
T ss_dssp EC---S----CS--SSCCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHH
T ss_pred cc---c----cc--CCcceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHH
Confidence 10 0 00 011111 2256677779999999999999 899999999999999988765443
|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-09 Score=85.05 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred cccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc
Q 048754 46 GLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI 125 (625)
Q Consensus 46 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (625)
.+++. .+++++++|. +|+|+++|+++++++|+++++++|++..++..+. . .....+.+.+..+.
T Consensus 11 ~il~~--~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~---------~--~~~~~~~~~~~~~~ 74 (115)
T 3b33_A 11 AILNN--MVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA---------S--LDLALLTQPLQSGQ 74 (115)
T ss_dssp HHHHH--CSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE---------E--CCTHHHHHHHHHCC
T ss_pred HHHhh--cCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc---------c--hhhHHHHHHHHcCC
Confidence 34455 8999999999 9999999999999999999999999877764311 1 11223444555555
Q ss_pred ce-EEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 126 EF-QGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 126 ~~-~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.. ..+.... ++|+.+|+.+.+.|+.+ +|. .+++.+++||+
T Consensus 75 ~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 75 SITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp CEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 43 3455555 78998999999999988 775 57888899985
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-08 Score=98.83 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=85.2
Q ss_pred eecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHH
Q 048754 42 SLKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (625)
++.+.+++. ++++|+++|. +|+|+++|+++++++||++++++|++..++.. .........+.+
T Consensus 8 ~~~~~i~~~--~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~------------~~~~~~~~~~~~ 70 (349)
T 3a0r_A 8 NFSESILES--LETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPD------------FEEIGSVAESVF 70 (349)
T ss_dssp -CCCSSGGG--SSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTT------------TTHHHHHHHHHH
T ss_pred HHHHHHHhh--hcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcC------------hhHHHHHHHHHH
Confidence 345566666 9999999999 99999999999999999999999998877732 222333444455
Q ss_pred HhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCE-EEEEEEEEeeecccccCCcch
Q 048754 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTV-THIIGIQIFSEAKIDLNHVSY 178 (625)
Q Consensus 122 ~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~-~~~i~~~~Dit~~~~~e~~~~ 178 (625)
..+.....+. ..+...|+.+.+.|+.+..+.. .+++++.+|||+++++++...
T Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~ 124 (349)
T 3a0r_A 71 ENKEPVFLNF----YKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERK 124 (349)
T ss_dssp HHCCCCEEEC----CCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTT
T ss_pred hcCCceeecc----cccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHH
Confidence 5555443221 1223457888999998887765 588999999999998876443
|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-07 Score=71.17 Aligned_cols=94 Identities=19% Similarity=0.066 Sum_probs=70.0
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
+++|+++|. +|+|+++|+++++++|+++++++|++..++ . ........+.+.+..+..... .
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~--~- 63 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL-P-----------DFEEIGSVAESVFENKEPVFL--N- 63 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS-T-----------TCHHHHHHHHHHHHHTCCEEE--E-
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC-c-----------chHHHHHHHHHHhccCCeEEE--E-
Confidence 678999999 999999999999999999999999987766 2 123344445555555555432 2
Q ss_pred EeecCcceeEEEEEEEeeCCCCC-EEEEEEEEEe
Q 048754 134 FKKDGTPLVNRLRLAPIRDDDGT-VTHIIGIQIF 166 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~~g~-~~~~i~~~~D 166 (625)
..++...|+.+.+.|+.+.+|. +.+++++.+|
T Consensus 64 -~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 64 -FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp -EEEETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred -EEcCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 2245567899999999987654 6788888766
|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.4e-07 Score=72.57 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=72.1
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+.+++. .++|++++|. +|+|+++|.++++++|+++++++|+++.++..+. .....+...+.+.+.++
T Consensus 25 ~~~ld~--l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~--------~~~~~f~grf~~~~~~G 91 (129)
T 1mzu_A 25 TAEFDA--LPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC--------TNIPAFSGRFMDGVTSG 91 (129)
T ss_dssp CTTGGG--CSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHTS
T ss_pred HHHHhc--cCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch--------hcccHHHHHHHHHHhcC
Confidence 334445 8999999999 9999999999999999999999999986543211 23445566777777766
Q ss_pred cceEEEEEE-EeecCcceeEEEEEEEeeCCCCCEEEE
Q 048754 125 IEFQGELLN-FKKDGTPLVNRLRLAPIRDDDGTVTHI 160 (625)
Q Consensus 125 ~~~~~e~~~-~~~dG~~~~~~~~~~~~~d~~g~~~~~ 160 (625)
. +..+... .+++|++.. +.+....+.+|...++
T Consensus 92 ~-l~~~~~yv~~~~~~p~~--v~i~l~~~~~~~~~~i 125 (129)
T 1mzu_A 92 T-LDARFDFVFDFQMAPVR--VQIRMQNAGVPDRYWI 125 (129)
T ss_dssp C-CEEEEEEEEECSSCEEE--EEEEEEECSSTTEEEE
T ss_pred c-eeEEEEEEEcCCCCEEE--EEEEEEEcCCCCEEEE
Confidence 5 5555444 488888554 5555556677766544
|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.8e-08 Score=96.02 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
++++.. .+++|+++|. +|+|+++|++ ++++ +++++++|+++.++.+ .........+.+.+.++
T Consensus 242 ~~IL~~--l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p----------~~~~~~~~~l~~~l~~g 304 (369)
T 3cax_A 242 KAIFEA--LPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHP----------PKSVYVVNKILKAFKEG 304 (369)
T ss_dssp HHHHHH--SSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSC----------GGGHHHHHHHHHHHHHT
T ss_pred HHHHHh--CCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCC----------hhhHHHHHHHHHHHHcC
Confidence 345555 8999999999 9999999999 9999 8999999999887743 22233445566677777
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
.....+.... .+| .++.++..|++|.+|.+.|++.+++|||+.+++++
T Consensus 305 ~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 305 RKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp SCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred CceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 7655554433 455 47888999999999999999999999999988765
|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=90.67 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=87.8
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-----e
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-----F 127 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 127 (625)
..+.++..+. +|.++++|+++..++||+++|++|++..++. ||++.+.....+.+.+..|.. .
T Consensus 153 ~~~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~v---------HPdD~~~~~~~~~~~l~~G~~~~~~~~ 220 (339)
T 3rty_A 153 SPKFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFY---------HHEDLSVMKETYETVMKKGQTAGASFC 220 (339)
T ss_dssp CCEEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHHHHTTSTTCCCB
T ss_pred CceEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEE---------CHHHHHHHHHHHHHHHHcCCccccccc
Confidence 4667888888 9999999999999999999999999888774 566666666667777776664 2
Q ss_pred EEEEEEEeecCcceeEEEEEEEeeCCC-CCEEEEEEEEEeeeccc
Q 048754 128 QGELLNFKKDGTPLVNRLRLAPIRDDD-GTVTHIIGIQIFSEAKI 171 (625)
Q Consensus 128 ~~e~~~~~~dG~~~~~~~~~~~~~d~~-g~~~~~i~~~~Dit~~~ 171 (625)
..+++++++||..+|++....++.|.. +.+..++++-+.++...
T Consensus 221 s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~ 265 (339)
T 3rty_A 221 SKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPK 265 (339)
T ss_dssp CCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCS
T ss_pred ceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCC
Confidence 468899999999999999999998764 56778888888888653
|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=87.98 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=82.8
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc---eEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE---FQGEL 131 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~ 131 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.+...+.+.+.+..++. ...++
T Consensus 175 ~Fitrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~v---------HPdD~~~~~~~~~~~l~~~~~~~f~s~~y 242 (317)
T 4dj3_A 175 IFTTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYL---------HPEDRPLMVAIHQKVLKYAGHPPFEHSPV 242 (317)
T ss_dssp EEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CTTTTTHHHHHHHHHHHTTTSCCEECCCE
T ss_pred ceEEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeE---------CHHHHHHHHHHHHHHHHcCCCccccceEE
Confidence 44555677 9999999999999999999999999888774 677777777777777776554 34688
Q ss_pred EEEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 132 LNFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 132 ~~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
|++++||...|++....++.+. .+++..++++-+-++..
T Consensus 243 R~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p 282 (317)
T 4dj3_A 243 RFCTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSP 282 (317)
T ss_dssp EEECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEEECCCC
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEeccCC
Confidence 9999999999999999998876 45666777776655544
|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=70.85 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=70.7
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.+..++|++++|. +|+|+++|+++++++|+++++++|+++.+...+. .....+...+.+.+.++. +..
T Consensus 23 ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~--------~~~~~f~~rf~~~~~~g~-l~~ 90 (125)
T 1nwz_A 23 LDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC--------TDSPEFYGKFKEGVASGN-LNT 90 (125)
T ss_dssp HTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHHTC-CEE
T ss_pred HhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch--------hcccHHHHHHHHHHhcCc-eeE
Confidence 4449999999999 9999999999999999999999999986543211 234455667777777666 554
Q ss_pred EEEE-EeecCcceeEEEEEEEeeCCCCCEEEE
Q 048754 130 ELLN-FKKDGTPLVNRLRLAPIRDDDGTVTHI 160 (625)
Q Consensus 130 e~~~-~~~dG~~~~~~~~~~~~~d~~g~~~~~ 160 (625)
+... .+++|++..+ .+....+.+|...++
T Consensus 91 ~~~~v~~~~~~p~~v--~i~l~~~~~~~~~~i 120 (125)
T 1nwz_A 91 MFEYTFDYQMTPTKV--KVHMKKALSGDSYWV 120 (125)
T ss_dssp EEEEEECTTSCCEEE--EEEEEECSSSSEEEE
T ss_pred EEEEEEcCCCCEEEE--EEEEEEcCCCCEEEE
Confidence 5444 4888986655 455556667766544
|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-07 Score=85.57 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=94.0
Q ss_pred cCCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH--------
Q 048754 50 YPTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC-------- 120 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 120 (625)
.++...-+++++. + |+|+|+|++..+++||+++|++|++..++. ||++...+..++...
T Consensus 32 L~aldgF~~vvs~---~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~i---------hp~D~~~f~~ql~~~~lP~~~~~ 99 (317)
T 4dj3_A 32 SKNTDTFAAVFSF---LSGRLVHISEQAALILNSKRGFLKSVHFVDLL---------APQDVRAFYAHTAPTQLPFWNNW 99 (317)
T ss_dssp TSCTTEEEEEEET---TTCBEEEECTTHHHHTTCCHHHHHTSBGGGGB---------CGGGHHHHHHHTCTTTCCCCC--
T ss_pred HhccCCEEEEEEc---CCcEEEEECCHHHHHcCCCHHHHcCCchhhhc---------ChhhHHHHHHhhcccCCCCcCCC
Confidence 3335555667776 5 999999999999999999999999988884 455555444432000
Q ss_pred ------HH--hCcceEEEEEEEeecC----cceeEEEEEEE--eeC---CCCCEEEEEEEEEeeecccccCCcchhhhhh
Q 048754 121 ------LE--EGIEFQGELLNFKKDG----TPLVNRLRLAP--IRD---DDGTVTHIIGIQIFSEAKIDLNHVSYPVFKE 183 (625)
Q Consensus 121 ------~~--~~~~~~~e~~~~~~dG----~~~~~~~~~~~--~~d---~~g~~~~~i~~~~Dit~~~~~e~~~~~~~~~ 183 (625)
.. ....+-. |+++.-+ ....+...... +.. .++....++.+.+-.+..+..+ +
T Consensus 100 ~~~~~~~~~~~~rsF~C--Rmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~--------~ 169 (317)
T 4dj3_A 100 TQRASQYECAPAKPFFC--RICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPR--------I 169 (317)
T ss_dssp --------CCCCCCEEE--EECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSC--------C
T ss_pred cccccccCCCCCceEEE--EEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCC--------c
Confidence 00 0111112 2222111 12233322211 110 1122233333322222211110 0
Q ss_pred hhccccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 184 NCNQQYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 184 ~~~~~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
. ......+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 170 ~----~~~~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~ 227 (317)
T 4dj3_A 170 P----VDKRIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQK 227 (317)
T ss_dssp C----GGGCEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHH
T ss_pred c----cCCCceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHH
Confidence 0 01111222 45666679999999999999 99999999999999998877555544
|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-07 Score=86.02 Aligned_cols=170 Identities=10% Similarity=0.035 Sum_probs=83.8
Q ss_pred cCCCCeeEEEecCCCCC-CCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHH---------
Q 048754 50 YPTTPTSFVVADAFDPD-FPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRR--------- 119 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~-g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 119 (625)
.++...-+++++. + |+|+|+++++..++||+++|++|++..++. ||++...+...+..
T Consensus 21 l~a~dgF~~vvs~---~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~i---------Hp~D~~~~~~~L~~~~lp~~~~~ 88 (309)
T 3gdi_A 21 VKNADMFAVAVSL---VSGKILYISNQVASIFHCKKDAFSDAKFVEFL---------APHDVSVFHSYTTPYKLPPWSVC 88 (309)
T ss_dssp --CTTEEEEEECT---TTCBEEEECTTTTTTC-------CCSBGGGGB---------CTTTHHHHHHHTCTTSSCBCC--
T ss_pred HHhcCCEEEEEEC---CCceEEEECCHHHHHcCCCHHHHcCCchhhcc---------CHhHHHHHHHhccccCCCCcccc
Confidence 3445666677776 6 999999999999999999999999988885 45554444433310
Q ss_pred ----H----HHhCcceEEEEEEEe-ecC--cceeEEEEEE--EeeCCCCC--EEEEEEEEEeeecccccCCcchhhhhhh
Q 048754 120 ----C----LEEGIEFQGELLNFK-KDG--TPLVNRLRLA--PIRDDDGT--VTHIIGIQIFSEAKIDLNHVSYPVFKEN 184 (625)
Q Consensus 120 ----~----~~~~~~~~~e~~~~~-~dG--~~~~~~~~~~--~~~d~~g~--~~~~i~~~~Dit~~~~~e~~~~~~~~~~ 184 (625)
. ......+..+++... ++. ...++.+... .+.+.+|. ....+.++.-+.-- .+. . ++
T Consensus 89 ~~~~~~~~~~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~--~~~-p----~~- 160 (309)
T 3gdi_A 89 SGLDSFTQECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSG--YEA-P----RI- 160 (309)
T ss_dssp ------------CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCT--TSS-S----CC-
T ss_pred cCccccccccCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCC--ccC-C----Cc-
Confidence 0 000112222222110 011 1222232222 12233332 22222222211100 000 0 00
Q ss_pred hccccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 185 CNQQYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
..+....+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 161 ---~~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~ 218 (309)
T 3gdi_A 161 ---PPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKK 218 (309)
T ss_dssp ---CGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHH
T ss_pred ---CCCCceEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHH
Confidence 001111122 55666779999999999999 99999999999999998877554444
|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-06 Score=81.84 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=82.7
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcc-eE-EEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIE-FQ-GELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~ 132 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.....+.+.+.+..++. .. .++|
T Consensus 166 ~Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~i---------HpdD~~~~~~~~~~~l~~~g~~~~~~~yR 233 (309)
T 3gdi_A 166 IFTTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQL---------HPSDRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp EEEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHB---------CTTSHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred eEEEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhC---------CHHHHHHHHHHHHHHHhcCCceeeceEEE
Confidence 35566677 9999999999999999999999999887774 566666666666666765443 44 5899
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++++||...|++....++.+. .+++..++++-+.++.-
T Consensus 234 ~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 999999999999998888765 56777888887777754
|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-06 Score=81.63 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=89.1
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH------------
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC------------ 120 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------ 120 (625)
...-++++.. .+|+|+|+|+.+.+++||+++|++|++..++.+ |++...+..++...
T Consensus 35 ldGF~~vvs~--~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iH---------p~D~~~f~~qL~~~~lp~~~~~~~~~ 103 (320)
T 4dj2_A 35 QDTFSVAVSF--LTGRIVYISEQAGVLLRCKRDVFRGARFSELLA---------PQDVGVFYGSTTPSRLPTWGTGTSAG 103 (320)
T ss_dssp SSEEEEEEET--TTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBC---------HHHHHHHHHHCCTTTCCBTTC-----
T ss_pred cCCEEEEEEC--CCceEEEECcHHHHHhCcCHHHHcCCcHHHhcC---------HHHHHHHHHhhcccCCCCcccCcccc
Confidence 4444455665 149999999999999999999999999888853 44433333322100
Q ss_pred -----HHhCcceEEEEEEE-eecC--cceeEEEE--EEEeeCCCCC--EEEEEEEEEee-ecccccCCcchhhhhhhhcc
Q 048754 121 -----LEEGIEFQGELLNF-KKDG--TPLVNRLR--LAPIRDDDGT--VTHIIGIQIFS-EAKIDLNHVSYPVFKENCNQ 187 (625)
Q Consensus 121 -----~~~~~~~~~e~~~~-~~dG--~~~~~~~~--~~~~~d~~g~--~~~~i~~~~Di-t~~~~~e~~~~~~~~~~~~~ 187 (625)
......+...++.. .++. ...++.+. +..+.+++|. ....+.++.-+ +..+..+ ..
T Consensus 104 ~~~~~~~~~rsF~CRmr~~l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~----------i~- 172 (320)
T 4dj2_A 104 SGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR----------IP- 172 (320)
T ss_dssp --------CCCEEEEECCC-------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC----------CC-
T ss_pred cccccCCCceeEEEEEEEeccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc----------cc-
Confidence 00111222222211 1111 12233322 2223344444 22222222211 1111000 00
Q ss_pred ccccccccc--cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 188 QYDQSAQYF--SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
......+. +.+..++|+|+++.+++||. +|++|..+++++||+|+..+....++
T Consensus 173 -~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~ 229 (320)
T 4dj2_A 173 -PDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKK 229 (320)
T ss_dssp -GGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred -CCCceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHH
Confidence 01111122 55666779999999999999 99999999999999998876444433
|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=82.62 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=81.1
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC-cce-EEEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG-IEF-QGELL 132 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~ 132 (625)
.-+...+. +|.++++|+++..++||.++|++|++..++. ||++.+...+.+.+.+..+ ... ..++|
T Consensus 177 ~Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~v---------HPdD~~~~~~~~~~~l~~~g~~~~~~~yR 244 (320)
T 4dj2_A 177 IFTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFL---------HPEDRPLMLAIHKKILQLAGQPFDHSPIR 244 (320)
T ss_dssp EEEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGB---------CGGGHHHHHHHHHHHTTSSSCCEECCCEE
T ss_pred eEEEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhC---------CHHHHHHHHHHHHHHHhcCCCcccceEEE
Confidence 44556677 9999999999999999999999999888774 5666655555555655533 344 35889
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++++||...|++....++.+. .+++..++++-+.++..
T Consensus 245 ~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 245 FCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 999999999999999888875 56777888877777654
|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-07 Score=77.24 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred cccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCC---CchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHH
Q 048754 44 KPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGY---RADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRC 120 (625)
Q Consensus 44 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (625)
.+.+++. .+++++++|. +|+|+++|+++++++|+ ++++++|++..++.. ... +.+.
T Consensus 17 ~~~il~~--~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~------------~~~----~~~~ 75 (118)
T 2w0n_A 17 RQAMLQS--IKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQ------------VVD----VSEV 75 (118)
T ss_dssp HHHHHHC--CCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSC------------THH----HHHH
T ss_pred HHHHHhh--ccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccC------------chh----HHHH
Confidence 3445555 8999999999 99999999999999997 889999998877743 111 3344
Q ss_pred HHhCcceEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 121 LEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 121 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
+..+.....+. ...+| .|+.+...|+.+ +|.+.+++++.+|||
T Consensus 76 ~~~~~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 76 LRDGTPRRDEE--ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp HHTTCCCCCCC--EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred hccCceeccEE--EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 44444332211 22345 467778889887 788888888889987
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00018 Score=74.02 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=44.8
Q ss_pred cccccCchh----HHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhcc
Q 048754 210 CGILQLSDE----VLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAW 261 (625)
Q Consensus 210 ~~~~g~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (625)
.-+..+|.| ++ ..++.++++.++..+..+||+|+.++.+..+|+..|...+
T Consensus 9 d~~~~lp~e~~~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 9 DFITALPARGLDHIA-ENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp CHHHHTGGGTCHHHH-HHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ChHHHCCcchHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 345568877 77 8999999999999999999999999999999999888654
|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-07 Score=80.75 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=72.3
Q ss_pred ecccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH
Q 048754 43 LKPGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (625)
..+.+++. .+++++++|. +|+|+++|+++++++|++.++++|++..++.++ .. +.+.+.
T Consensus 81 ~l~~il~~--~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~----------~~------~~~~~~ 139 (190)
T 2jhe_A 81 ALSALLEA--LPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLING----------FN------FLRWLE 139 (190)
T ss_dssp HHHHHHHH--CSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTT----------CC------HHHHHH
T ss_pred HHHHHHHh--CCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCC----------CC------HHHHHh
Confidence 34455556 8999999999 999999999999999999999999988877531 11 122333
Q ss_pred hCc--ceEEEEEEEeecCcceeEEEEEEEeeCCCCC----EEEEEEEEEeeeccc
Q 048754 123 EGI--EFQGELLNFKKDGTPLVNRLRLAPIRDDDGT----VTHIIGIQIFSEAKI 171 (625)
Q Consensus 123 ~~~--~~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~----~~~~i~~~~Dit~~~ 171 (625)
.+. ....+.. .+|. ++.+.+.|+.+.+|. +.+++.+.+|||+.+
T Consensus 140 ~~~~~~~~~~~~---~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 140 SEPQDSHNEHVV---INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp TCCCSCEEEEEE---ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred cCCCCCcceEEE---ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 333 2222332 2665 456778898765555 677778889999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0029 Score=65.07 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=44.0
Q ss_pred cccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 210 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
.-+..+|+|++ ..++.++++.++..+..+||+|+.++.+..+|+..++..
T Consensus 17 d~~~~lp~e~~-~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~ 66 (445)
T 2ovr_B 17 DFISLLPKELA-LYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66 (445)
T ss_dssp STTTSSCHHHH-HHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred ChhHHCCHHHH-HHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence 34567888888 899999999999999999999999999999999887643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0053 Score=61.46 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=117.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCC----CccceeEEEEcCCEEEEEccCCCCCccc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP----GRWGHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~----~r~~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
.+.++.++.||+.... ..+++||..+.+..|+.-.....+. .....+...+.++.||+.... .
T Consensus 47 ~~p~v~~~~v~~~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~------g 113 (376)
T 3q7m_A 47 LHPALADNVVYAADRA-------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK------A 113 (376)
T ss_dssp CCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT------S
T ss_pred eccEEECCEEEEEcCC-------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC------C
Confidence 3566789999998642 2489999987667887542111100 111123334557788886532 4
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL 464 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~ 464 (625)
.++.+|..+++..|+.-.... ...+. .+.++.+|+..+ ...++.||+.+.+..|+.-........+.
T Consensus 114 ~l~a~d~~tG~~~W~~~~~~~-----~~~~p-~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 114 QVYALNTSDGTVAWQTKVAGE-----ALSRP-VVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp EEEEEETTTCCEEEEEECSSC-----CCSCC-EEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred EEEEEECCCCCEEEEEeCCCc-----eEcCC-EEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 699999999988898543221 11122 233667777432 13689999988888898754321111122
Q ss_pred cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCc---cceEEEEecCCE
Q 048754 465 GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPR---LDHVAVSMPCGR 541 (625)
Q Consensus 465 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~~~~~~ 541 (625)
..+.++. ++.+|+ |.. ...++.+|+.+....|+.-...+ .+.....+ .....+.. ++.
T Consensus 181 ~~~~~~~-~~~v~~-g~~---------~g~l~~~d~~tG~~~w~~~~~~~-------~~~~~~~~~~~~~~~p~~~-~~~ 241 (376)
T 3q7m_A 181 ESAPTTA-FGAAVV-GGD---------NGRVSAVLMEQGQMIWQQRISQA-------TGSTEIDRLSDVDTTPVVV-NGV 241 (376)
T ss_dssp CCCCEEE-TTEEEE-CCT---------TTEEEEEETTTCCEEEEEECCC------------------CCCCCCEEE-TTE
T ss_pred CCCcEEE-CCEEEE-EcC---------CCEEEEEECCCCcEEEEEecccC-------CCCcccccccccCCCcEEE-CCE
Confidence 2233344 436665 322 25688999987667887643221 00000011 11122233 777
Q ss_pred EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 542 IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 542 l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
+|+.+. ...+++||+.+.+..|+.-
T Consensus 242 v~~~~~-------~g~l~~~d~~tG~~~w~~~ 266 (376)
T 3q7m_A 242 VFALAY-------NGNLTALDLRSGQIMWKRE 266 (376)
T ss_dssp EEEECT-------TSCEEEEETTTCCEEEEEC
T ss_pred EEEEec-------CcEEEEEECCCCcEEeecc
Confidence 777532 3478999995556678653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0037 Score=64.58 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=44.3
Q ss_pred cccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcc-hhHHhhhhhhc
Q 048754 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKN-EHVRKMVCQNA 260 (625)
Q Consensus 210 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (625)
.-+..+|+|++ ..++.++++.++..+..+||+|+.++.+ ..+|+..+...
T Consensus 13 d~~~~lp~~~~-~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~ 63 (464)
T 3v7d_B 13 DLITSLPFEIS-LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 63 (464)
T ss_dssp CHHHHSCHHHH-HHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 34667899998 9999999999999999999999999998 88999888643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.022 Score=56.81 Aligned_cols=200 Identities=12% Similarity=0.138 Sum_probs=114.4
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEE
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
.+.+..++.||+.... ..++++|..+-+..|+.-. ... ...+. ++.++.+|+..+ ...++.
T Consensus 97 ~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~-~~~----~~~~p-~~~~~~v~v~~~------~g~l~~ 157 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKV-AGE----ALSRP-VVSDGLVLIHTS------NGQLQA 157 (376)
T ss_dssp EEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEEC-SSC----CCSCC-EEETTEEEEECT------TSEEEE
T ss_pred cCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeC-CCc----eEcCC-EEECCEEEEEcC------CCeEEE
Confidence 4445678889886532 2489999987666787532 111 11112 233667777543 136999
Q ss_pred EECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC-----
Q 048754 389 LDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR----- 463 (625)
Q Consensus 389 ~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r----- 463 (625)
||..+++..|..-........+...+.+.. ++.+|+ |.. ...++.||+.+.+..|+.-.. .|...
T Consensus 158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~ 227 (376)
T 3q7m_A 158 LNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVV-GGD------NGRVSAVLMEQGQMIWQQRIS--QATGSTEIDR 227 (376)
T ss_dssp EETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEE-CCT------TTEEEEEETTTCCEEEEEECC--C---------
T ss_pred EECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEE-EcC------CCEEEEEECCCCcEEEEEecc--cCCCCccccc
Confidence 999998778986543211111222233333 556666 321 136899999888888986532 11111
Q ss_pred ---CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 464 ---LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 464 ---~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
.....++. ++.+|+.+. ...++.+|+.+....|+.-.. . .......++
T Consensus 228 ~~~~~~~p~~~-~~~v~~~~~----------~g~l~~~d~~tG~~~w~~~~~--------------~----~~~~~~~~~ 278 (376)
T 3q7m_A 228 LSDVDTTPVVV-NGVVFALAY----------NGNLTALDLRSGQIMWKRELG--------------S----VNDFIVDGN 278 (376)
T ss_dssp --CCCCCCEEE-TTEEEEECT----------TSCEEEEETTTCCEEEEECCC--------------C----EEEEEEETT
T ss_pred ccccCCCcEEE-CCEEEEEec----------CcEEEEEECCCCcEEeeccCC--------------C----CCCceEECC
Confidence 11223334 447777642 257889999876667864311 1 122333388
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
.||+... ...+++||+.+.+..|+.-
T Consensus 279 ~l~~~~~-------~g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 279 RIYLVDQ-------NDRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp EEEEEET-------TCCEEEEETTTCCEEEEEC
T ss_pred EEEEEcC-------CCeEEEEECCCCcEEEeec
Confidence 8888743 3479999996556678754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0085 Score=57.06 Aligned_cols=223 Identities=8% Similarity=0.011 Sum_probs=119.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|..+ +.++++|..+-+..|+.-. + .....|.+....++++++.+ .+.++.||+ +++
T Consensus 5 ~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~--~--~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW------NKIAIINKDTKEIVWEYPL--E--KGWECNSVAATKAGEILFSY-------SKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTC------SEEEEEETTTTEEEEEEEC--C--TTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSC
T ss_pred CcEEEeeCCC------CEEEEEECCCCeEEEEeCC--C--ccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCC
Confidence 5666666542 2388999866556787431 1 11123455555566677733 135999999 677
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC-CCcceEEEECCc
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS-RLGHSLSVYGRT 474 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~ 474 (625)
..|+.-.. .....+++....++.+++..... ...++.+|+ +.+..|+.-.....+.+ ...+.+....++
T Consensus 67 ~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 67 ELWNIAAP----AGCEMQTARILPDGNALVAWCGH-----PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EEEEEECC----TTCEEEEEEECTTSCEEEEEEST-----TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred EEEEEcCC----CCccccccEECCCCCEEEEecCC-----CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC
Confidence 78875432 11122444455455565543311 136777886 44444553211111110 111223344444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+++.... ...+..||++ ....|+.-... ..+++....+++++|.+..
T Consensus 137 ~~lv~~~~---------~~~v~~~d~~-G~~~w~~~~~~----------------~~~~~~~~~~g~~~v~~~~------ 184 (276)
T 3no2_A 137 NYLVPLFA---------TSEVREIAPN-GQLLNSVKLSG----------------TPFSSAFLDNGDCLVACGD------ 184 (276)
T ss_dssp CEEEEETT---------TTEEEEECTT-SCEEEEEECSS----------------CCCEEEECTTSCEEEECBT------
T ss_pred CEEEEecC---------CCEEEEECCC-CCEEEEEECCC----------------CccceeEcCCCCEEEEeCC------
Confidence 55554332 2678899988 56678753211 1234455557888887653
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCC--CcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFA--WGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r--~~~~~~~~~~~~i~i~G 600 (625)
...++.||+.+.+..|+.-.. ..+..+ +-.++.+..++.+||..
T Consensus 185 ~~~v~~~d~~tG~~~w~~~~~--~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 185 AHCFVQLNLESNRIVRRVNAN--DIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp TSEEEEECTTTCCEEEEEEGG--GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCeEEEEeCcCCcEEEEecCC--CCCCccccccccceEcCCCCEEEEe
Confidence 346999999655677876532 111112 12445556677888766
|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
Probab=96.68 E-value=1.2e-05 Score=77.84 Aligned_cols=111 Identities=16% Similarity=0.055 Sum_probs=70.4
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhC---CCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHh-Ccc
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTG---YRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEE-GIE 126 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 126 (625)
+..++||+++|. +|+|+++|++++++++ +. ++++|++..++...... .+.........+...+.. +..
T Consensus 177 ~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~----~~~~~~~~~~~l~~vl~~~~~~ 248 (305)
T 2ykf_A 177 PRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLIS----DPFEAHEVDEHVQDLLAGDGKG 248 (305)
Confidence 358899999999 9999999999999985 44 78899988777531000 000000111112222322 222
Q ss_pred eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecccccCC
Q 048754 127 FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAKIDLNH 175 (625)
Q Consensus 127 ~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~~~~e~ 175 (625)
...+.. ..| .++.+...|+.+ +|.+.+.+.+++|||+.+++|+
T Consensus 249 ~~~ei~---~~~--~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~ 291 (305)
T 2ykf_A 249 MRMEVD---AGG--ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDR 291 (305)
Confidence 222221 123 356777889876 5778889999999999998776
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.091 Score=51.25 Aligned_cols=278 Identities=10% Similarity=-0.045 Sum_probs=139.4
Q ss_pred ccceeeeecccCeeEEeeec--CCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCC
Q 048754 280 RLARELTTLEAVCWRKFTVR--GAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPP 356 (625)
Q Consensus 280 ~~~~~~~~~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~ 356 (625)
.-.-.++|+.+.++...-.. ...+.......++..++++|+.... .+.+.++|..+ .+- ..+. ....
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t--~~~~~~i~--~~~~ 85 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINT--FKEVGRIT--GFTS 85 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTT--CCEEEEEE--CCSS
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcc--cEEEEEcC--CCCC
Confidence 33445677777766532110 1123333345566789999999863 23489999987 333 2231 1122
Q ss_pred CccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC-CCccceEEEEcCCEEEEEcCcCCCCce
Q 048754 357 GRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL-PRSWHSSCIIEGSKLVVSGGCTDAGVL 435 (625)
Q Consensus 357 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~ 435 (625)
| +.++...++++|+.... .+.+.++|+.+.+..+ .++.+.... ...-+..+. +++++|+..- . .
T Consensus 86 p---~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~-~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~-~----~ 150 (328)
T 3dsm_A 86 P---RYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITG-YIECPDMDMESGSTEQMVQ-YGKYVYVNCW-S----Y 150 (328)
T ss_dssp E---EEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEE-EEECTTCCTTTCBCCCEEE-ETTEEEEEEC-T----T
T ss_pred C---cEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEE-EEEcCCccccCCCcceEEE-ECCEEEEEcC-C----C
Confidence 2 23343245689998753 2579999999883222 232221000 001122333 6789999742 0 1
Q ss_pred eceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCC-cccccCceEEEEcCCCCCceeEeeecc
Q 048754 436 LSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGH-LRLRSGESYTIDLGDEEPQWKQLECNA 514 (625)
Q Consensus 436 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~~~~~d~~~~~~~W~~~~~~~ 514 (625)
.+.+.++|+.+.+..+ .++....| +.++...++++|+......... .......++++|+.+ .+....-..
T Consensus 151 ~~~v~viD~~t~~~~~-~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~v~~~~~~- 221 (328)
T 3dsm_A 151 QNRILKIDTETDKVVD-ELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FTVEKQFKF- 221 (328)
T ss_dssp CCEEEEEETTTTEEEE-EEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TEEEEEEEC-
T ss_pred CCEEEEEECCCCeEEE-EEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--CeEEEEEec-
Confidence 2578999987765322 22221122 3344445568888754321111 000126799999883 343322112
Q ss_pred ccCcCCCCCCCCCCccceEEEEec-CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC-CCCcceEEEEC
Q 048754 515 FTGVGSQSAVVPPPRLDHVAVSMP-CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK-FAWGHSTCVVG 592 (625)
Q Consensus 515 ~~~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~-~r~~~~~~~~~ 592 (625)
+........+... ++.||+..+ .++++|+ .+.+..... ..+. ...-.++++.+
T Consensus 222 -----------~~g~~p~~la~~~d~~~lyv~~~---------~v~~~d~--~t~~~~~~~---~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 222 -----------KLGDWPSEVQLNGTRDTLYWINN---------DIWRMPV--EADRVPVRP---FLEFRDTKYYGLTVNP 276 (328)
T ss_dssp -----------CTTCCCEEEEECTTSCEEEEESS---------SEEEEET--TCSSCCSSC---SBCCCSSCEEEEEECT
T ss_pred -----------CCCCCceeEEEecCCCEEEEEcc---------EEEEEEC--CCCceeeee---eecCCCCceEEEEEcC
Confidence 1111122333332 567888632 8999999 444432111 1111 12223444443
Q ss_pred -CcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 593 -GTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 593 -~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
++.||+....+-.. -+.|++|+.+
T Consensus 277 ~~g~lyva~~~~y~~--~~~V~v~d~~ 301 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQ--QGIVYRYSPQ 301 (328)
T ss_dssp TTCCEEEEECTTSSS--EEEEEEECTT
T ss_pred CCCeEEEEccccccc--CCEEEEECCC
Confidence 57888876321111 3567777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.15 Score=49.56 Aligned_cols=230 Identities=9% Similarity=-0.010 Sum_probs=118.8
Q ss_pred CCCeEEEeccCCCCceEEccc---CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSV---KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPP 407 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~---~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p 407 (625)
.+.+.++|+.+ .++..--. ...+.....+.++. .++++|+.... .+.+.++|+.+.+.. ..++.. .
T Consensus 16 ~~~l~~~d~~t--~~~~~~i~~~~n~~~lg~~~~~i~~-~~~~lyv~~~~-----~~~v~viD~~t~~~~-~~i~~~--~ 84 (328)
T 3dsm_A 16 NATLSYYDPAT--CEVENEVFYRANGFKLGDVAQSMVI-RDGIGWIVVNN-----SHVIFAIDINTFKEV-GRITGF--T 84 (328)
T ss_dssp CBEEEEEETTT--TEEECSHHHHHHSSCCBSCEEEEEE-ETTEEEEEEGG-----GTEEEEEETTTCCEE-EEEECC--S
T ss_pred CceEEEEECCC--CEEhhhhHhhhcCcccCccceEEEE-ECCEEEEEEcC-----CCEEEEEECcccEEE-EEcCCC--C
Confidence 34588999887 45543110 11122233344444 57789998752 357999999988322 234322 2
Q ss_pred CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCC-CCCCcceEEEECCcEEEEEcCCcCCC
Q 048754 408 LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP-PSRLGHSLSVYGRTKVLMFGGLAKSG 486 (625)
Q Consensus 408 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~ 486 (625)
.+ +..+...++++|+.... .+.+.++|+.+.+..++ ++.+... ....-+.+++ .++++|+..-.
T Consensus 85 ~p---~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~-i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~---- 149 (328)
T 3dsm_A 85 SP---RYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGY-IECPDMDMESGSTEQMVQ-YGKYVYVNCWS---- 149 (328)
T ss_dssp SE---EEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEE-EECTTCCTTTCBCCCEEE-ETTEEEEEECT----
T ss_pred CC---cEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEE-EEcCCccccCCCcceEEE-ECCEEEEEcCC----
Confidence 22 23334245689997632 25789999877553322 2221100 0002234444 45599998420
Q ss_pred CcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC----CCcEEEEe
Q 048754 487 HLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS----PSQLFLLD 562 (625)
Q Consensus 487 ~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~----~~~v~~~d 562 (625)
..+.+.++|+.+ .+....-.. + ..| +......++++|+..-....... .+.++++|
T Consensus 150 ----~~~~v~viD~~t--~~~~~~i~~---------g--~~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 150 ----YQNRILKIDTET--DKVVDELTI---------G--IQP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp ----TCCEEEEEETTT--TEEEEEEEC---------S--SCB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred ----CCCEEEEEECCC--CeEEEEEEc---------C--CCc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence 026899999984 333222111 1 111 23333446888887543211111 36899999
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 563 PSEEKPSWRILNVPGQPPKFAWGHSTCVVG-GTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 563 ~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
+ .+.+....- ..|....-..+++.. ++.+|+..+ .++++|+.+.
T Consensus 210 ~--~t~~v~~~~---~~~~g~~p~~la~~~d~~~lyv~~~---------~v~~~d~~t~ 254 (328)
T 3dsm_A 210 A--ETFTVEKQF---KFKLGDWPSEVQLNGTRDTLYWINN---------DIWRMPVEAD 254 (328)
T ss_dssp T--TTTEEEEEE---ECCTTCCCEEEEECTTSCEEEEESS---------SEEEEETTCS
T ss_pred C--CCCeEEEEE---ecCCCCCceeEEEecCCCEEEEEcc---------EEEEEECCCC
Confidence 9 555554321 111122223444443 457777543 6777777554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.14 Score=46.99 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=105.3
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
+.++.+|+..|..+. +.+..+|+.++ +-. .++- |..-++... ...++++|+.... .+.+++||+
T Consensus 28 ~~~~~LyestG~~g~---S~v~~vD~~tg--kv~~~~~l---~~~~fgeGi-~~~~~~ly~ltw~------~~~v~v~D~ 92 (243)
T 3mbr_X 28 YLRGHLYESTGETGR---SSVRKVDLETG--RILQRAEV---PPPYFGAGI-VAWRDRLIQLTWR------NHEGFVYDL 92 (243)
T ss_dssp EETTEEEEEECCTTS---CEEEEEETTTC--CEEEEEEC---CTTCCEEEE-EEETTEEEEEESS------SSEEEEEET
T ss_pred EECCEEEEECCCCCC---ceEEEEECCCC--CEEEEEeC---CCCcceeEE-EEeCCEEEEEEee------CCEEEEEEC
Confidence 456799999996543 46899999998 333 3321 333344444 4447899997542 358999997
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCc-eeEeeeccccCcCCCCC
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQ-WKQLECNAFTGVGSQSA 523 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~~~~~~~~~ 523 (625)
++.+ .+.. .+.+..+.+++. ++++||+.-| ++.++++|+++ .+ -..+...
T Consensus 93 ~tl~----~~~t--i~~~~~Gwglt~-dg~~L~vSdg----------s~~l~~iDp~t--~~~~~~I~V~---------- 143 (243)
T 3mbr_X 93 ATLT----PRAR--FRYPGEGWALTS-DDSHLYMSDG----------TAVIRKLDPDT--LQQVGSIKVT---------- 143 (243)
T ss_dssp TTTE----EEEE--EECSSCCCEEEE-CSSCEEEECS----------SSEEEEECTTT--CCEEEEEECE----------
T ss_pred CcCc----EEEE--EeCCCCceEEee-CCCEEEEECC----------CCeEEEEeCCC--CeEEEEEEEc----------
Confidence 6533 2221 111223455554 3448999855 27899999984 32 2223221
Q ss_pred CCCCCccc-eEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeE-EEcCCCCC--------CCCCCcceEEEEC-
Q 048754 524 VVPPPRLD-HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWR-ILNVPGQP--------PKFAWGHSTCVVG- 592 (625)
Q Consensus 524 ~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~-~v~~~~~~--------p~~r~~~~~~~~~- 592 (625)
..+.+... .-+... +++||+--- ..++|.+.|+ .+.+=. .+...+-. +..-.-.+.+...
T Consensus 144 ~~g~~~~~lNeLe~~-~G~lyanvw------~s~~I~vIDp--~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 144 AGGRPLDNLNELEWV-NGELLANVW------LTSRIARIDP--ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEET------TTTEEEEECT--TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred cCCcccccceeeEEe-CCEEEEEEC------CCCeEEEEEC--CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 11222111 122233 788886432 2579999999 444332 22222111 1111223444443
Q ss_pred CcEEEEEcCcCCCCCccCceEEEEcc
Q 048754 593 GTRVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 593 ~~~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
+++|||.|=+- ..+|...+.
T Consensus 215 ~~~lfVTGK~w------p~~~~v~~~ 234 (243)
T 3mbr_X 215 HDRLFVTGKRW------PMLYEIRLT 234 (243)
T ss_dssp TTEEEEEETTC------SEEEEEEEC
T ss_pred CCEEEEECCCC------CcEEEEEEe
Confidence 47899988643 445555543
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00091 Score=45.32 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=38.7
Q ss_pred ccccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhh
Q 048754 209 ICGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKM 255 (625)
Q Consensus 209 ~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (625)
...+..+|+|++ ..++.++++.++..+..+||+|+.++.+..+|+.
T Consensus 6 ~~~~~~LP~eil-~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ 51 (53)
T 1fs1_A 6 GVSWDSLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51 (53)
T ss_dssp ---CCSSCHHHH-HHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC--
T ss_pred CCCHHHCCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHh
Confidence 345678999999 8999999999999999999999999999998874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.26 Score=45.67 Aligned_cols=197 Identities=13% Similarity=0.085 Sum_probs=104.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+.++.+|+..|..+ .+.+.++|+.|++.. ..++. + ++....++...++++|+.... .+.+++||++
T Consensus 50 ~~~~~LyestG~~g---~S~v~~vD~~Tgkv~-~~~~l---~-~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~ 115 (262)
T 3nol_A 50 YRNGYFYESTGLNG---RSSIRKVDIESGKTL-QQIEL---G-KRYFGEGISDWKDKIVGLTWK------NGLGFVWNIR 115 (262)
T ss_dssp EETTEEEEEEEETT---EEEEEEECTTTCCEE-EEEEC---C-TTCCEEEEEEETTEEEEEESS------SSEEEEEETT
T ss_pred EECCEEEEECCCCC---CceEEEEECCCCcEE-EEEec---C-CccceeEEEEeCCEEEEEEee------CCEEEEEECc
Confidence 34679999998644 246899999998422 23321 2 233233344457899997542 2589999986
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+.+. -..++. +-.+.+.+. +++.||+.-| ++.++++|+++. ..-..+.... ...
T Consensus 116 t~~~-~~ti~~-----~~eG~glt~-dg~~L~~SdG----------s~~i~~iDp~T~-~v~~~I~V~~--------~g~ 169 (262)
T 3nol_A 116 NLRQ-VRSFNY-----DGEGWGLTH-NDQYLIMSDG----------TPVLRFLDPESL-TPVRTITVTA--------HGE 169 (262)
T ss_dssp TCCE-EEEEEC-----SSCCCCEEE-CSSCEEECCS----------SSEEEEECTTTC-SEEEEEECEE--------TTE
T ss_pred cCcE-EEEEEC-----CCCceEEec-CCCEEEEECC----------CCeEEEEcCCCC-eEEEEEEecc--------CCc
Confidence 6441 223332 123344543 3448888754 278999999841 1222222210 000
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEE-EcCCCCC-------CCCCCcceEEEEC-CcEE
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI-LNVPGQP-------PKFAWGHSTCVVG-GTRV 596 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~-v~~~~~~-------p~~r~~~~~~~~~-~~~i 596 (625)
|....+ -+... +++||+--- ..++|.+.|+ .+.+=.. +...+-. +..-.-.+.+... .++|
T Consensus 170 ~~~~lN-ELe~~-~G~lyan~w------~~~~I~vIDp--~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 170 ELPELN-ELEWV-DGEIFANVW------QTNKIVRIDP--ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp ECCCEE-EEEEE-TTEEEEEET------TSSEEEEECT--TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred cccccc-eeEEE-CCEEEEEEc------cCCeEEEEEC--CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 111111 12233 788886422 2579999999 4544322 2222111 1111224445554 4789
Q ss_pred EEEcCcCCCCCccCceEEEEcc
Q 048754 597 LVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 597 ~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
||.|-.- ..+|...+.
T Consensus 240 fVTGK~W------p~~~ev~~~ 255 (262)
T 3nol_A 240 FVTGKLW------PKVFEITLT 255 (262)
T ss_dssp EEEETTC------SEEEEEEEE
T ss_pred EEECCCC------CceEEEEEe
Confidence 9988643 345555443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.53 Score=45.72 Aligned_cols=198 Identities=10% Similarity=0.049 Sum_probs=96.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-----ccceeEEEE-cCCEEEEEccCCCCCccccEEE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-----RWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFV 388 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-----r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 388 (625)
++.+|+.++.. +.++++|+.+....+ .+.......+ ..-+.++.. +++++|+.+... ...+++
T Consensus 100 g~~l~v~~~~~------~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~ 168 (353)
T 3vgz_A 100 TQTLWFGNTVN------SAVTAIDAKTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWV 168 (353)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEE
T ss_pred CCEEEEEecCC------CEEEEEeCCCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEE
Confidence 45688877642 248999987742222 2322211110 111223332 456788776321 235999
Q ss_pred EECCCCCCEEEEcC-CCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 389 LDLDAKQPTWIEVS-GGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 389 ~d~~t~~~~W~~~~-~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
+|+.+.+..+ .++ ....| +..+.. +++.+|+... .+.++++|+.+....+..-. ..........
T Consensus 169 ~d~~~~~~~~-~~~~~~~~~-----~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~ 234 (353)
T 3vgz_A 169 VDGGNIKLKT-AIQNTGKMS-----TGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKL-LDDGKEHFFI 234 (353)
T ss_dssp EETTTTEEEE-EECCCCTTC-----CCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEEC-CCSSSCCCEE
T ss_pred EcCCCCceEE-EecCCCCcc-----ceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEc-CCCCCCcccc
Confidence 9998873222 222 11111 222233 5566777543 14678899876553333222 1111111222
Q ss_pred eEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEE
Q 048754 467 SLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIF 545 (625)
Q Consensus 467 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~ 545 (625)
+++... ++.+|+.... ...+++||+.+ .+....-.. +.+ ...++.-.++.+|+.
T Consensus 235 ~~~~s~dg~~l~~~~~~---------~~~v~~~d~~~--~~~~~~~~~------------~~~--~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 235 NISLDTARQRAFITDSK---------AAEVLVVDTRN--GNILAKVAA------------PES--LAVLFNPARNEAYVT 289 (353)
T ss_dssp EEEEETTTTEEEEEESS---------SSEEEEEETTT--CCEEEEEEC------------SSC--CCEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEeCC---------CCEEEEEECCC--CcEEEEEEc------------CCC--ceEEECCCCCEEEEE
Confidence 333433 3367776432 26889999974 232222212 112 223333324457777
Q ss_pred ecCCCCCCCCCcEEEEeCCCCCCCe
Q 048754 546 GGSIAGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 546 GG~~~~~~~~~~v~~~d~~~~~~~W 570 (625)
+.. .+.+.++|+ .+.+.
T Consensus 290 ~~~------~~~v~~~d~--~~~~~ 306 (353)
T 3vgz_A 290 HRQ------AGKVSVIDA--KSYKV 306 (353)
T ss_dssp ETT------TTEEEEEET--TTTEE
T ss_pred ECC------CCeEEEEEC--CCCeE
Confidence 543 358999998 44443
|
| >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0059 Score=49.27 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=72.1
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCCc--hhhcCCCCcccccCCcccccCCCCCCh--HHHHHHHHHHHhCcceEEEEE
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYRA--DEVLGRNCRFLQYRDPRAQRRHPLVDP--VVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~ 132 (625)
+.-.|. +|.|+++.....+ .++.+ +|++|+.+.+++ ||++.. ...+.+.+++..|.....-++
T Consensus 10 ~sRh~~---dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~---------H~~D~~~s~l~~h~~~vl~~Gq~~S~~YR 76 (132)
T 1oj5_A 10 MTKQDT---TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFF---------QPQGREPSYARQLFQEVMTRGTASSPSYR 76 (132)
T ss_dssp EEEECT---TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHT---------SCBTTBCCHHHHHHHHHHHHSEEECCCEE
T ss_pred EEeecC---CCcEEEEeccccc-ccccccHHHHHHHHHHHHh---------CcccchHHHHHHHHHHHHHcCCccccceE
Confidence 344566 9999999998774 77777 899999999885 455543 556666677777777777789
Q ss_pred EEeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecc
Q 048754 133 NFKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~ 170 (625)
++.++|..+|+......+++. ..++..++++-.-+.+.
T Consensus 77 fr~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~ 115 (132)
T 1oj5_A 77 FILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDREH 115 (132)
T ss_dssp EECTTSCEEEEEEEEEEECC----CCCEEEEEEEEECC-
T ss_pred EEecCCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcCC
Confidence 999999999999988877764 23445555554444443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.4 Score=48.35 Aligned_cols=150 Identities=11% Similarity=-0.021 Sum_probs=72.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+.|+.+. .+.+||+.+.... ..+. . ..... .+++.. +++.+|+.++.+ ..+++||+.+
T Consensus 180 ~~~~~~s~~~d~------~v~~~d~~~~~~~-~~~~-~--~~~~~-~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~ 243 (433)
T 3bws_A 180 HNELWVSQMQAN------AVHVFDLKTLAYK-ATVD-L--TGKWS-KILLYDPIRDLVYCSNWIS-----EDISVIDRKT 243 (433)
T ss_dssp GTEEEEEEGGGT------EEEEEETTTCCEE-EEEE-C--SSSSE-EEEEEETTTTEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEEECCCC------EEEEEECCCceEE-EEEc-C--CCCCe-eEEEEcCCCCEEEEEecCC-----CcEEEEECCC
Confidence 678888877532 3889998763222 2221 1 11111 222222 355677776543 3689999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCc--eeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV--LLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
. +....... . ..-++.+...++..+++++...... .-..+++||+.+.. ...... .+. .-.+++..
T Consensus 244 ~--~~~~~~~~--~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~--~~~--~~~~~~~~ 311 (433)
T 3bws_A 244 K--LEIRKTDK--I--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIG--PPG--NKRHIVSG 311 (433)
T ss_dssp T--EEEEECCC--C--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEE--EEE--CEEEEEEC
T ss_pred C--cEEEEecC--C--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeecc--CCC--CcceEEEC
Confidence 7 54433221 1 1112232323333444444322211 12478899986544 222110 111 11123333
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.++ .+|+.++.+ ..+.+||+.
T Consensus 312 ~~g~~l~~~~~~~---------~~v~v~d~~ 333 (433)
T 3bws_A 312 NTENKIYVSDMCC---------SKIEVYDLK 333 (433)
T ss_dssp SSTTEEEEEETTT---------TEEEEEETT
T ss_pred CCCCEEEEEecCC---------CEEEEEECC
Confidence 333 677776542 678899987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.44 Score=46.41 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=32.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+++||+.+... ....+++|++.+ .+++.+.......... ..++.. +++.+|+.+..+ +.+.+||+.
T Consensus 50 dg~l~~~~~~~----~~~~v~~~~~~~--g~~~~~~~~~~~~~~p-~~~a~spdg~~l~~~~~~~-----~~v~v~~~~ 116 (347)
T 3hfq_A 50 KDCLYSVDKED----DEGGIAAWQIDG--QTAHKLNTVVAPGTPP-AYVAVDEARQLVYSANYHK-----GTAEVMKIA 116 (347)
T ss_dssp TCEEEEEEEET----TEEEEEEEEEET--TEEEEEEEEEEESCCC-SEEEEETTTTEEEEEETTT-----TEEEEEEEC
T ss_pred CCeEEEEEecC----CCceEEEEEecC--CcEEEeeeeecCCCCC-EEEEECCCCCEEEEEeCCC-----CEEEEEEeC
Confidence 56677766421 123488999865 4665553211111111 122222 455677765321 357777774
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.32 Score=52.65 Aligned_cols=130 Identities=11% Similarity=0.073 Sum_probs=76.8
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-------ccceeEEEEcCCEEEEEccCCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-------RWGHTLSSLNGSWLVVFGGCGRQG 381 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-------r~~~~~~~~~~~~iyv~GG~~~~~ 381 (625)
.+.++.++.||+.... +.++.+|..+-+..|+.-. ...... ....+.+ +.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~~~a-~~~~~v~v~~~----- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDP-QIDRSTGFKGCCDVVNRGVA-LWKGKVYVGAW----- 136 (677)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECC-CCCGGGGGGSSSCSCCCCCE-EETTEEEEECT-----
T ss_pred eCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC-CCCccccccccccCCCCCce-EECCEEEEEcC-----
Confidence 4456789999998762 2489999987667898532 111100 0112223 34677887643
Q ss_pred ccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-.. ..........+. .+.++.+|+..+..+ ......++.||..+.+..|+.-.
T Consensus 137 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p-~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP-RVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp -TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC-EEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEeeecCCcCcCcCcccccCc-EEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 146999999999888986432 111111111222 334667777443211 11235799999999988898654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.45 Score=47.97 Aligned_cols=228 Identities=12% Similarity=0.131 Sum_probs=112.4
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
..++++|+... .-..+.... ... .+.+...+++.+++++.... ...++++|+.++ +...+... + . .
T Consensus 159 ~~i~i~d~~g~--~~~~l~~~~---~~v-~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg--~~~~l~~~--~-~-~ 224 (415)
T 2hqs_A 159 YELRVSDYDGY--NQFVVHRSP---QPL-MSPAWSPDGSKLAYVTFESG--RSALVIQTLANG--AVRQVASF--P-R-H 224 (415)
T ss_dssp EEEEEEETTSC--SCEEEEEES---SCE-EEEEECTTSSEEEEEECTTS--SCEEEEEETTTC--CEEEEECC--S-S-C
T ss_pred ceEEEEcCCCC--CCEEEeCCC---Ccc-eeeEEcCCCCEEEEEEecCC--CcEEEEEECCCC--cEEEeecC--C-C-c
Confidence 46889998752 334332111 111 12222223344455544321 257999999988 55555432 1 1 1
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 490 (625)
..+.+.. +++.+++.+.... ...++++|+.+.. ...+... + ....+.....+++.+++++... +
T Consensus 225 ~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~--~~~l~~~--~--~~~~~~~~spdg~~l~~~s~~~-g---- 289 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQ--IRQVTDG--R--SNNTEPTWFPDSQNLAFTSDQA-G---- 289 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCC--EEECCCC--S--SCEEEEEECTTSSEEEEEECTT-S----
T ss_pred ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCC--EEeCcCC--C--CcccceEECCCCCEEEEEECCC-C----
Confidence 1222222 4444554443221 2479999987655 5555431 1 1112233333444444433211 1
Q ss_pred ccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCe
Q 048754 491 RSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW 570 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W 570 (625)
...+|.+|+.+ ..-..+... ...........+++.+++++...+ ...++++|+ .+...
T Consensus 290 -~~~i~~~d~~~--~~~~~l~~~--------------~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~--~~~~~ 347 (415)
T 2hqs_A 290 -RPQVYKVNING--GAPQRITWE--------------GSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL--ATGGV 347 (415)
T ss_dssp -SCEEEEEETTS--SCCEECCCS--------------SSEEEEEEECTTSSEEEEEEECSS---CEEEEEEET--TTCCE
T ss_pred -CcEEEEEECCC--CCEEEEecC--------------CCcccCeEECCCCCEEEEEECcCC---ceEEEEEEC--CCCCE
Confidence 25789999874 233332211 112222333346666666554321 358999999 56666
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
..+.. . . ...+....++++.+++++.++. ...+|+++++.
T Consensus 348 ~~l~~--~---~-~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g 387 (415)
T 2hqs_A 348 QVLSS--T---F-LDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDG 387 (415)
T ss_dssp EECCC--S---S-SCEEEEECTTSSEEEEEEEETT---EEEEEEEETTS
T ss_pred EEecC--C---C-CcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCC
Confidence 55432 1 1 2334445566777777775443 24688888753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.31 Score=45.12 Aligned_cols=150 Identities=14% Similarity=0.054 Sum_probs=85.1
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
+.++.+|+..|..+ .+.++|+.|++..-+.+ |..-++. ++...++++|+.... .+.+++||++
T Consensus 62 ~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~l-----~~~~Fge-Git~~g~~Ly~ltw~------~~~v~V~D~~ 124 (268)
T 3nok_A 62 FHQGHFFESTGHQG-----TLRQLSLESAQPVWMER-----LGNIFAE-GLASDGERLYQLTWT------EGLLFTWSGM 124 (268)
T ss_dssp EETTEEEEEETTTT-----EEEECCSSCSSCSEEEE-----CTTCCEE-EEEECSSCEEEEESS------SCEEEEEETT
T ss_pred EECCEEEEEcCCCC-----EEEEEECCCCcEEeEEC-----CCCccee-EEEEeCCEEEEEEcc------CCEEEEEECC
Confidence 45789999999654 38899999985433332 2222333 345567899997542 2589999976
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+.+. -..++. +-.+.+++.-+ ++||+.-| .+.++++|+++. ..-..+... ..
T Consensus 125 Tl~~-~~ti~~-----~~eGwGLt~Dg-~~L~vSdG----------s~~l~~iDp~T~-~v~~~I~V~----------~~ 176 (268)
T 3nok_A 125 PPQR-ERTTRY-----SGEGWGLCYWN-GKLVRSDG----------GTMLTFHEPDGF-ALVGAVQVK----------LR 176 (268)
T ss_dssp TTEE-EEEEEC-----SSCCCCEEEET-TEEEEECS----------SSEEEEECTTTC-CEEEEEECE----------ET
T ss_pred cCcE-EEEEeC-----CCceeEEecCC-CEEEEECC----------CCEEEEEcCCCC-eEEEEEEeC----------CC
Confidence 6331 122232 22234555444 49999865 278999999841 122222221 01
Q ss_pred CCCccce-EEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 526 PPPRLDH-VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 526 p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
+.+.... -+... +++||+-- ...++|.+.|+ .+.+
T Consensus 177 g~~v~~lNeLe~~-dG~lyanv------w~s~~I~vIDp--~TG~ 212 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANI------WHSSDVLEIDP--ATGT 212 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEE------TTCSEEEEECT--TTCB
T ss_pred CcccccccccEEe-CCEEEEEE------CCCCeEEEEeC--CCCc
Confidence 1111111 12223 78888532 12579999999 4544
|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00042 Score=57.43 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=37.8
Q ss_pred hhhcccccccc---ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 183 ENCNQQYDQSA---QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 183 ~~~~~~~~~~~---~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
++++..++.+. .++|.+..++++|+++++++||+ +|++|.++..++++++..
T Consensus 16 ~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~ 71 (130)
T 1d06_A 16 AHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRH 71 (130)
T ss_dssp SCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHH
T ss_pred HHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHH
Confidence 34444444433 34477777889999999999999 889988888888776543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.68 Score=50.10 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=74.6
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CC--ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+... .+.++.+|..|++..|+.-....... .. .......+.++.+|+... -..++
T Consensus 75 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~ 141 (677)
T 1kb0_A 75 VVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLI 141 (677)
T ss_dssp EETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred EECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEE
Confidence 34778998865 25699999999988898654321000 00 011223445768888532 14689
Q ss_pred EEecCCCCCceEEcCCCCCCC-CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 441 LLDLTTDKPMWREIPTSWSPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
.+|..+.+..|+.-.....+. .....+.++.++ .+|+..+....+. ...++.||..+....|+.-.
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~----~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGV----RGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCC----BCEEEEEETTTCCEEEEEES
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCC----CCEEEEEECCCCcEEEEecc
Confidence 999999988998753201111 112223334444 7766543221111 36789999987777898644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.69 Score=44.90 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=76.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+...........+.++++|+.+....+ .+..... -+..+.. +++++|+.++.+ +.++++|+.+
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~-----~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~ 120 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-AIHNDLK-----PFGATINNTTQTLWFGNTVN-----SAVTAIDAKT 120 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEE-EEEESSC-----CCSEEEETTTTEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-EEecCCC-----cceEEECCCCCEEEEEecCC-----CEEEEEeCCC
Confidence 45787776432211123458999987632122 2211111 1233333 455688877643 3689999988
Q ss_pred CCCEEE-EcCCCCCCC---CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceE
Q 048754 394 KQPTWI-EVSGGAPPL---PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 394 ~~~~W~-~~~~~~~p~---~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~ 468 (625)
.+..+. .......|. +..-+..+.. +++.+|+.+... ...++++|+.+.+..+. ++.. ...-+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~-~~~~----~~~~~~~ 190 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTA-IQNT----GKMSTGL 190 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEE-ECCC----CTTCCCC
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEE-ecCC----CCccceE
Confidence 844333 222111110 1111223333 556677765211 14689999866543222 2211 1111233
Q ss_pred EEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 469 SVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 469 ~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+... ++.+|+... ...++++|+.+
T Consensus 191 ~~s~dg~~l~~~~~----------~~~i~~~d~~~ 215 (353)
T 3vgz_A 191 ALDSEGKRLYTTNA----------DGELITIDTAD 215 (353)
T ss_dssp EEETTTTEEEEECT----------TSEEEEEETTT
T ss_pred EECCCCCEEEEEcC----------CCeEEEEECCC
Confidence 3433 336776543 25788999884
|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00098 Score=53.55 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=37.5
Q ss_pred ccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHH
Q 048754 194 QYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIG 237 (625)
Q Consensus 194 ~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~ 237 (625)
.+++.++.++|+|+++++++||+ +|++|..+++++||+|...+.
T Consensus 13 ~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~ 57 (111)
T 2vlg_A 13 AVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVE 57 (111)
T ss_dssp EEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHH
T ss_pred EEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHH
Confidence 34466677779999999999999 889999999999999977653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.34 Score=48.11 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=108.2
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+|+.|+.+. .++++|+.+ .+-...-... . .-.+++.. +++++|+.|+.+ ..+.++|+.++
T Consensus 2 ~~l~vs~~~d~------~v~v~d~~~--~~~~~~~~~~--~--~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~ 64 (391)
T 1l0q_A 2 TFAYIANSESD------NISVIDVTS--NKVTATIPVG--S--NPMGAVISPDGTKVYVANAHS-----NDVSIIDTATN 64 (391)
T ss_dssp EEEEEEETTTT------EEEEEETTT--TEEEEEEECS--S--SEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTT
T ss_pred CEEEEEcCCCC------EEEEEECCC--CeEEEEeecC--C--CcceEEECCCCCEEEEECCCC-----CeEEEEECCCC
Confidence 35777776532 388999876 3332211111 1 11223322 455677777543 46899999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
+....-.. +. .-.+.+.. +++.+|+.+... ..+.+||+.+.. ...... . ...-.+++...+
T Consensus 65 --~~~~~~~~--~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~--~~~~~~--~--~~~~~~~~~s~d 126 (391)
T 1l0q_A 65 --NVIATVPA--GS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNT--VAGTVK--T--GKSPLGLALSPD 126 (391)
T ss_dssp --EEEEEEEC--SS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTE--EEEEEE--C--SSSEEEEEECTT
T ss_pred --eEEEEEEC--CC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCe--EEEEEe--C--CCCcceEEECCC
Confidence 44322111 11 11222222 344566655421 468999987654 222111 1 111133434333
Q ss_pred c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-EEEEEecCCCC
Q 048754 474 T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIAG 551 (625)
Q Consensus 474 ~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~ 551 (625)
+ .+|+.++.+ ..++++|+.+ .+....... ......+....++ .|++.++.
T Consensus 127 g~~l~~~~~~~---------~~v~~~d~~~--~~~~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~--- 178 (391)
T 1l0q_A 127 GKKLYVTNNGD---------KTVSVINTVT--KAVINTVSV--------------GRSPKGIAVTPDGTKVYVANFD--- 178 (391)
T ss_dssp SSEEEEEETTT---------TEEEEEETTT--TEEEEEEEC--------------CSSEEEEEECTTSSEEEEEETT---
T ss_pred CCEEEEEeCCC---------CEEEEEECCC--CcEEEEEec--------------CCCcceEEECCCCCEEEEEeCC---
Confidence 3 576776542 6788999873 333322211 1111233333344 56666553
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...+.++|+ .+......... ...-.+++...++..+++++.+.. -+.++++++.+
T Consensus 179 ---~~~v~~~d~--~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~---~~~v~~~d~~~ 233 (391)
T 1l0q_A 179 ---SMSISVIDT--VTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGT 233 (391)
T ss_dssp ---TTEEEEEET--TTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSS---CCEEEEEETTT
T ss_pred ---CCEEEEEEC--CCCeEEEEEec-----CCCccceEECCCCCEEEEEecCcC---CCcEEEEECCC
Confidence 357999998 44433322211 111123334445555555543211 24556666543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.59 Score=45.82 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=52.1
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccE--EEEECCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDV--FVLDLDAK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~--~~~d~~t~ 394 (625)
..+++|.+.... ...+++|.++..+.+++.+... ......+.+..-+++.||+.+..+.. ...+ |.++..++
T Consensus 14 ~~~~vg~y~~~~--~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g 87 (361)
T 3scy_A 14 LTMLVGTYTSGN--SKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEEEECCSSS--CCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTT
T ss_pred eEEEEEeccCCC--CCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCC
Confidence 344556654321 3446666665444666655322 11111111222235567776653211 1244 44555545
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
....+.......... .....+++.+|+.+.. ...+.+|++.+
T Consensus 88 --~~~~~~~~~~~~~~p--~~~~~dg~~l~~~~~~------~~~v~~~~~~~ 129 (361)
T 3scy_A 88 --TLHLLNTQKTMGADP--CYLTTNGKNIVTANYS------GGSITVFPIGQ 129 (361)
T ss_dssp --EEEEEEEEECSSSCE--EEEEECSSEEEEEETT------TTEEEEEEBCT
T ss_pred --cEEEeeEeccCCCCc--EEEEECCCEEEEEECC------CCEEEEEEeCC
Confidence 666554321011111 2222367677775431 13677888754
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.32 Score=44.52 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=69.9
Q ss_pred EEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCc
Q 048754 415 SCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGE 494 (625)
Q Consensus 415 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 494 (625)
+..++++.+|+-.|.... +.+..+|+++... -..++ .+...++.+++..++ +||+.... .+.
T Consensus 25 GL~~~~~~LyestG~~g~----S~v~~vD~~tgkv-~~~~~---l~~~~fgeGi~~~~~-~ly~ltw~---------~~~ 86 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETGR----SSVRKVDLETGRI-LQRAE---VPPPYFGAGIVAWRD-RLIQLTWR---------NHE 86 (243)
T ss_dssp EEEEETTEEEEEECCTTS----CEEEEEETTTCCE-EEEEE---CCTTCCEEEEEEETT-EEEEEESS---------SSE
T ss_pred cEEEECCEEEEECCCCCC----ceEEEEECCCCCE-EEEEe---CCCCcceeEEEEeCC-EEEEEEee---------CCE
Confidence 445567899998885432 4788999987652 22332 344556667777765 99998544 378
Q ss_pred eEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 495 SYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 495 ~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
+++||++ +-+.+... +.+..+-..+ ..+++||+.=| .+.++.+|+ .+.+
T Consensus 87 v~v~D~~----tl~~~~ti------------~~~~~Gwglt-~dg~~L~vSdg-------s~~l~~iDp--~t~~ 135 (243)
T 3mbr_X 87 GFVYDLA----TLTPRARF------------RYPGEGWALT-SDDSHLYMSDG-------TAVIRKLDP--DTLQ 135 (243)
T ss_dssp EEEEETT----TTEEEEEE------------ECSSCCCEEE-ECSSCEEEECS-------SSEEEEECT--TTCC
T ss_pred EEEEECC----cCcEEEEE------------eCCCCceEEe-eCCCEEEEECC-------CCeEEEEeC--CCCe
Confidence 9999988 33344443 1222333443 43667888744 458999999 4544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.56 Score=46.48 Aligned_cols=144 Identities=14% Similarity=0.089 Sum_probs=72.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
+..||+.|+.+. .+.++|+.+ .+....-... . .-.+++.. ++++||+.|..+ +.+++||+.+
T Consensus 43 g~~l~~~~~~d~------~i~v~d~~~--~~~~~~~~~~--~--~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~ 105 (391)
T 1l0q_A 43 GTKVYVANAHSN------DVSIIDTAT--NNVIATVPAG--S--SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTS 105 (391)
T ss_dssp SSEEEEEEGGGT------EEEEEETTT--TEEEEEEECS--S--SEEEEEECTTSSEEEEEETTT-----TEEEEEETTT
T ss_pred CCEEEEECCCCC------eEEEEECCC--CeEEEEEECC--C--CccceEECCCCCEEEEEECCC-----CEEEEEECCC
Confidence 456777776432 488999876 3333221111 1 11222222 355677766432 3699999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+ +....... . ..-.+.+.. +++.+|+.++.. ..++++|+.+.. ....-.. ...-.+++...
T Consensus 106 ~--~~~~~~~~--~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~--~~~~~~~----~~~~~~~~~~~ 167 (391)
T 1l0q_A 106 N--TVAGTVKT--G--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKA--VINTVSV----GRSPKGIAVTP 167 (391)
T ss_dssp T--EEEEEEEC--S--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTE--EEEEEEC----CSSEEEEEECT
T ss_pred C--eEEEEEeC--C--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCc--EEEEEec----CCCcceEEECC
Confidence 7 44322211 1 111222222 444676766532 378899986654 3222111 11112333333
Q ss_pred C-cEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 473 R-TKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 473 ~-~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
+ +.+|+.++.+ ..++++|+.+
T Consensus 168 dg~~l~~~~~~~---------~~v~~~d~~~ 189 (391)
T 1l0q_A 168 DGTKVYVANFDS---------MSISVIDTVT 189 (391)
T ss_dssp TSSEEEEEETTT---------TEEEEEETTT
T ss_pred CCCEEEEEeCCC---------CEEEEEECCC
Confidence 3 3676765542 5788999873
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.23 Score=48.46 Aligned_cols=144 Identities=9% Similarity=0.035 Sum_probs=65.5
Q ss_pred CeEEEeccCCCCceEEcccCC-CCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKS-SPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.+++|.++..+.++..+.... ...| ..++...++++|+.+..+ -...+++||+.++ .+..+..........
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g--~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKED---DEGGIAAWQIDGQ--TAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEET---TEEEEEEEEEETT--EEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecC---CCceEEEEEecCC--cEEEeeeeecCCCCC
Confidence 355555544335666542111 1111 123333355677765421 1256899999777 665543210011111
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc---CCC-CCCCCC----CcceEEEECCcEEEEEcCC
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI---PTS-WSPPSR----LGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~---~~~-~~p~~r----~~~~~~~~~~~~l~v~GG~ 482 (625)
...+.. +++.+|+.+.. . ..+.+|++.... ....+ ... ..|.+| .-++++...++++|+.+..
T Consensus 89 -~~~a~spdg~~l~~~~~~-~-----~~v~v~~~~~~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~ 160 (347)
T 3hfq_A 89 -AYVAVDEARQLVYSANYH-K-----GTAEVMKIAADG-ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG 160 (347)
T ss_dssp -SEEEEETTTTEEEEEETT-T-----TEEEEEEECTTS-CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred -EEEEECCCCCEEEEEeCC-C-----CEEEEEEeCCCC-CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence 222233 45556665421 1 356777764211 13222 111 111111 1233444445567765432
Q ss_pred cCCCCcccccCceEEEEcC
Q 048754 483 AKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~ 501 (625)
.+.+++|++.
T Consensus 161 ---------~~~v~~~~~~ 170 (347)
T 3hfq_A 161 ---------SDKVYVYNVS 170 (347)
T ss_dssp ---------TTEEEEEEEC
T ss_pred ---------CCEEEEEEEC
Confidence 2578888887
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.32 E-value=1 Score=45.24 Aligned_cols=245 Identities=16% Similarity=0.023 Sum_probs=113.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccC-CCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVK-SSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
++.+++.++.+. .++++|+.+ .+....... ....+... .+++...++.+++.|+.+ ..+.+||+.
T Consensus 133 ~~~~~~~~~~~~------~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d~~ 199 (433)
T 3bws_A 133 NTRLAIPLLEDE------GMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFDLK 199 (433)
T ss_dssp SSEEEEEBTTSS------SEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEETT
T ss_pred CCeEEEEeCCCC------eEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEECC
Confidence 678888876532 389999887 344432111 00011111 122223456788877643 368999998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+.+..+. +.. ..... .+.+.. +++.+|+.++.+ ..+.+||+.+.. ....-. ....-.+++..
T Consensus 200 ~~~~~~~-~~~---~~~~~-~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~--~~~~~~----~~~~~~~~~~~ 262 (433)
T 3bws_A 200 TLAYKAT-VDL---TGKWS-KILLYDPIRDLVYCSNWIS------EDISVIDRKTKL--EIRKTD----KIGLPRGLLLS 262 (433)
T ss_dssp TCCEEEE-EEC---SSSSE-EEEEEETTTTEEEEEETTT------TEEEEEETTTTE--EEEECC----CCSEEEEEEEC
T ss_pred CceEEEE-EcC---CCCCe-eEEEEcCCCCEEEEEecCC------CcEEEEECCCCc--EEEEec----CCCCceEEEEc
Confidence 7633332 221 11111 222233 455666766422 368899986644 322211 11112333343
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCC-EEEEEecCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGGSIA 550 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~ 550 (625)
.+++.+++++....... .....+++||+.+. +-...... + .....+....++ .+|+.++.
T Consensus 263 ~~g~~l~~~~~~~~~~~-~~dg~i~~~d~~~~--~~~~~~~~------------~--~~~~~~~~~~~g~~l~~~~~~-- 323 (433)
T 3bws_A 263 KDGKELYIAQFSASNQE-SGGGRLGIYSMDKE--KLIDTIGP------------P--GNKRHIVSGNTENKIYVSDMC-- 323 (433)
T ss_dssp TTSSEEEEEEEESCTTC-SCCEEEEEEETTTT--EEEEEEEE------------E--ECEEEEEECSSTTEEEEEETT--
T ss_pred CCCCEEEEEECCCCccc-cCCCeEEEEECCCC--cEEeeccC------------C--CCcceEEECCCCCEEEEEecC--
Confidence 34444444443221110 00257889998742 22222111 0 011122222234 67777654
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC---------CccCceEEEEccC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE---------WVLNELHELCLAS 619 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~---------~~~~d~~~~~~~~ 619 (625)
...+.+||+ .+.+-...- +....-.+++...+++.+++++..... ..-..++++++.+
T Consensus 324 ----~~~v~v~d~--~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 324 ----CSKIEVYDL--KEKKVQKSI-----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp ----TTEEEEEET--TTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred ----CCEEEEEEC--CCCcEEEEe-----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 458999998 333322221 111112344444555555555443211 0123677777754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.79 Score=44.87 Aligned_cols=232 Identities=8% Similarity=0.010 Sum_probs=109.4
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.+||+.. ..+..+..-... ...-.+..+ .. +.+++.|+.++ .+.+||+.
T Consensus 23 ~~~l~~~~~dg------~i~iw~~~~--~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 87 (379)
T 3jrp_A 23 GKRLATCSSDK------TIKIFEVEG--ETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEE 87 (379)
T ss_dssp SSEEEEEETTS------CEEEEEEET--TEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEEE
T ss_pred CCEEEEEECCC------cEEEEecCC--CcceeeeEecCC--CCcEEEEEeCCCCCCCEEEEeccCC-----EEEEEEcC
Confidence 44555665432 278888875 345443211111 111122223 12 35666676543 58889998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cC--CEEEEEcCcCCCCceeceEEEEecCCCCCc-eEEcCCCCCCCCCCcceE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EG--SKLVVSGGCTDAGVLLSDTYLLDLTTDKPM-WREIPTSWSPPSRLGHSL 468 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~-W~~~~~~~~p~~r~~~~~ 468 (625)
++ .|..+...... ...-.++.+ .+ +.+++.|+.+ ..+.+||+.+.... -..+.. ...+ -.++
T Consensus 88 ~~--~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~--~~~~--v~~~ 153 (379)
T 3jrp_A 88 NG--RWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HAIG--VNSA 153 (379)
T ss_dssp TT--EEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC--CTTC--EEEE
T ss_pred CC--ceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC--CCCc--eEEE
Confidence 88 76654432111 111222333 22 3566666532 36788887554211 111111 1111 1122
Q ss_pred EEEC-------------CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 469 SVYG-------------RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 469 ~~~~-------------~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
.... ++.+++.|+.+ ..+.+||+.+....|..+... ........++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~------------~~h~~~v~~~ 212 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDV 212 (379)
T ss_dssp EECCCC----------CTTCEEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCC---------CeEEEEEecCCCcceeeEEEE------------ecccCcEeEE
Confidence 2222 34677777653 567788876544456655544 1111222233
Q ss_pred Ee-cC---CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 536 SM-PC---GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 536 ~~-~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.+ .+ +.+++.|+.+ ..+.+||+......+...... .......-.++...+++.+++.|+.++
T Consensus 213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 33 34 6888888753 357788874233333333211 111111123334445667777777644
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.2 Score=46.49 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.+..++++.+|+..|... .+..+|+++....-+. .+...++.+.+..++ +||+.... .+
T Consensus 58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-----l~~~~FgeGit~~g~-~Ly~ltw~---------~~ 116 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-----RLGNIFAEGLASDGE-RLYQLTWT---------EG 116 (268)
T ss_dssp EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-----ECTTCCEEEEEECSS-CEEEEESS---------SC
T ss_pred ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-----CCCCcceeEEEEeCC-EEEEEEcc---------CC
Confidence 344566889999888432 3888999887644433 222334455666555 99998553 37
Q ss_pred ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 494 ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 494 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
.+++||+++ -+.+...+ .+..+...+ ..+++||+.-| .+.++.+|+ .+.+
T Consensus 117 ~v~V~D~~T----l~~~~ti~------------~~~eGwGLt-~Dg~~L~vSdG-------s~~l~~iDp--~T~~ 166 (268)
T 3nok_A 117 LLFTWSGMP----PQRERTTR------------YSGEGWGLC-YWNGKLVRSDG-------GTMLTFHEP--DGFA 166 (268)
T ss_dssp EEEEEETTT----TEEEEEEE------------CSSCCCCEE-EETTEEEEECS-------SSEEEEECT--TTCC
T ss_pred EEEEEECCc----CcEEEEEe------------CCCceeEEe-cCCCEEEEECC-------CCEEEEEcC--CCCe
Confidence 899999883 33444331 112233333 33778888754 458999999 4543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.64 Score=49.10 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=73.8
Q ss_pred EcCCEEEEEccCCCCCccccEEEEEC-CCCCCEEEEcCCCCCC-C--CC--ccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDL-DAKQPTWIEVSGGAPP-L--PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~p-~--~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+.++.||+.... .+.++.+|. .+++..|+.-...... . .. .......+.++++|+... -..+
T Consensus 60 v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l 127 (571)
T 2ad6_A 60 VIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHL 127 (571)
T ss_dssp EETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEE
T ss_pred EECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEE
Confidence 347789988652 246999999 8998899965432100 0 00 001122344668888533 1368
Q ss_pred EEEecCCCCCceEEcCCCCCCCC-CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPS-RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+.+|..+.+..|+.-... .+.. ....+.++.++ .+|+-.+....+. ...++.||..+....|+.-.
T Consensus 128 ~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~----~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 128 LALDAKTGKINWEVEVCD-PKVGSTLTQAPFVAKD-TVLMGCSGAELGV----RGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETT-EEEEECBCGGGTC----CCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEEEEecCCC-CCccceeccCCEEECC-EEEEEecCCccCC----CCEEEEEECCCCcEEEEEcc
Confidence 999999998889864321 1111 11223334444 7776543211111 26789999987777897543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.75 Score=48.58 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=76.1
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEec-cCCCCceEEcccCCCC-C--Cc---cceeEEEEcCCEEEEEccCCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNL-DAANPEWRRVSVKSSP-P--GR---WGHTLSSLNGSWLVVFGGCGRQG 381 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~p-~--~r---~~~~~~~~~~~~iyv~GG~~~~~ 381 (625)
.+.++.++.||+.... .+.++++|. .+-+..|+.-...... . +. ...+.+ +.+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~----- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA-YGAGQIVKKQA----- 123 (571)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE-EETTEEEEECT-----
T ss_pred cccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE-EECCEEEEEeC-----
Confidence 4556789999998763 134999999 7766789853211100 0 00 111223 44678887743
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-............+.++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 124 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 124 -NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEcc
Confidence 236999999999889985432110000111222334 667777433111 01235789999999888897643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.15 Score=47.21 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=65.9
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.+..+.++.+|+..|... .+.+..+|+++.+. -..++ .+...++.+++..++ +||+.... .+
T Consensus 46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv-~~~~~---l~~~~FgeGit~~g~-~ly~ltw~---------~~ 107 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKT-LQQIE---LGKRYFGEGISDWKD-KIVGLTWK---------NG 107 (262)
T ss_dssp EEEEEETTEEEEEEEETT----EEEEEEECTTTCCE-EEEEE---CCTTCCEEEEEEETT-EEEEEESS---------SS
T ss_pred ceEEEECCEEEEECCCCC----CceEEEEECCCCcE-EEEEe---cCCccceeEEEEeCC-EEEEEEee---------CC
Confidence 344455779999888532 24788999987662 22333 343445566666665 99998553 37
Q ss_pred ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 494 ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 494 ~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
.+++||+++ -+.+... +.+..+-..+ ..++.||+.-| .+.++.+|+.
T Consensus 108 ~v~v~D~~t----~~~~~ti------------~~~~eG~glt-~dg~~L~~SdG-------s~~i~~iDp~ 154 (262)
T 3nol_A 108 LGFVWNIRN----LRQVRSF------------NYDGEGWGLT-HNDQYLIMSDG-------TPVLRFLDPE 154 (262)
T ss_dssp EEEEEETTT----CCEEEEE------------ECSSCCCCEE-ECSSCEEECCS-------SSEEEEECTT
T ss_pred EEEEEECcc----CcEEEEE------------ECCCCceEEe-cCCCEEEEECC-------CCeEEEEcCC
Confidence 899999983 2334333 1111223333 33667777643 4579999993
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.47 Score=44.74 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=99.3
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+++++.|..+ +.++++|..+++..|+.-... ....|......++.+++.+ .+.++.||+ +.+
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~ 66 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSY--------SKGAKMITR-DGR 66 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEEC--------BSEEEEECT-TSC
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeC--------CCCEEEECC-CCC
Confidence 4677776533 468999998997788855421 1122455555566777732 135899998 677
Q ss_pred CceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC
Q 048754 449 PMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP 528 (625)
Q Consensus 449 ~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~ 528 (625)
..|+.-.. .....+++....++.+++..... ...++.+|++. ...|+.-..... ..+.
T Consensus 67 ~~W~~~~~----~~~~~~~~~~~~dG~~lv~~~~~--------~~~v~~vd~~G-k~l~~~~~~~~~--------~~~~- 124 (276)
T 3no2_A 67 ELWNIAAP----AGCEMQTARILPDGNALVAWCGH--------PSTILEVNMKG-EVLSKTEFETGI--------ERPH- 124 (276)
T ss_dssp EEEEEECC----TTCEEEEEEECTTSCEEEEEEST--------TEEEEEECTTS-CEEEEEEECCSC--------SSGG-
T ss_pred EEEEEcCC----CCccccccEECCCCCEEEEecCC--------CCEEEEEeCCC-CEEEEEeccCCC--------Cccc-
Confidence 77876431 11123455556565666653321 14677788753 344553221100 0010
Q ss_pred ccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcC
Q 048754 529 RLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 529 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~ 603 (625)
...+.+....++.+++.... ...|.+||++ .+..|+.-.. .. -+++....++.+++.+..+
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~-G~~~w~~~~~--~~-----~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFA------TSEVREIAPN-GQLLNSVKLS--GT-----PFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp GSCSCCEECTTSCEEEEETT------TTEEEEECTT-SCEEEEEECS--SC-----CCEEEECTTSCEEEECBTT
T ss_pred ccccCceECCCCCEEEEecC------CCEEEEECCC-CCEEEEEECC--CC-----ccceeEcCCCCEEEEeCCC
Confidence 11112223446777766432 4579999996 6777865431 11 2345556566777766543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.72 Score=44.25 Aligned_cols=180 Identities=18% Similarity=0.140 Sum_probs=84.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++..++.|+.+ ..+.+||+.+. ............... .+.+...++..++.|+.+ ..+.+||+.+
T Consensus 107 ~~~~~l~~~~~d-----~~i~~~d~~~~--~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d------g~v~~~d~~~ 172 (337)
T 1gxr_A 107 PDGCTLIVGGEA-----STLSIWDLAAP--TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSD------GNIAVWDLHN 172 (337)
T ss_dssp TTSSEEEEEESS-----SEEEEEECCCC----EEEEEEECSSSCE-EEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred CCCCEEEEEcCC-----CcEEEEECCCC--CcceeeecccCCCce-EEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence 344566666643 36889999887 432221110011111 122223344566666532 3588899765
Q ss_pred CCCceEE-cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWRE-IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.. ... +.. . ...-.++....++..++.|+.+ ..+.+||+.+. + .+....
T Consensus 173 ~~--~~~~~~~--~--~~~i~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~--~--~~~~~~----------- 222 (337)
T 1gxr_A 173 QT--LVRQFQG--H--TDGASCIDISNDGTKLWTGGLD---------NTVRSWDLREG--R--QLQQHD----------- 222 (337)
T ss_dssp TE--EEEEECC--C--SSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTT--E--EEEEEE-----------
T ss_pred Cc--eeeeeec--c--cCceEEEEECCCCCEEEEEecC---------CcEEEEECCCC--c--eEeeec-----------
Confidence 43 222 221 1 1111233333344566666642 57889998732 2 222220
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
....-.++....+++++++|+. ...+..||+. +..-..... ....-.++....++.+++.|+.++
T Consensus 223 -~~~~v~~~~~s~~~~~l~~~~~------~~~i~~~~~~--~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEWLAVGME------SSNVEVLHVN--KPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEET------TSCEEEEETT--SSCEEEECC-----CSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CCCceEEEEECCCCCEEEEEcC------CCcEEEEECC--CCCeEEEcC-----CccceeEEEECCCCCEEEEecCCC
Confidence 1111123333346677777764 3468899984 333222211 111122334444567777777543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=1 Score=42.04 Aligned_cols=204 Identities=12% Similarity=-0.028 Sum_probs=106.1
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.+....++.+|+..|..+ .+.+.++|+.|++.. ..++. +...++. ++...++.+|+..- ..+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~-~~i~l---~~~~fge-Gi~~~g~~lyv~t~------~~~~v~ 89 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVE-NIHKM---DDSYFGE-GLTLLNEKLYQVVW------LKNIGF 89 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEE-EEEEC---CTTCCEE-EEEEETTEEEEEET------TCSEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEE-EEEec---CCCcceE-EEEEeCCEEEEEEe------cCCEEE
Confidence 4454444379999877422 246999999998322 23321 2222333 34445779999743 235789
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCC
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGS 520 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~ 520 (625)
+||+++.+. -..++.+ .| .+.+.+ .+++++|+.-| .+.++++|+.+. ..-..+...
T Consensus 90 viD~~t~~v-~~~i~~g-~~---~g~glt-~Dg~~l~vs~g----------s~~l~viD~~t~-~v~~~I~Vg------- 145 (266)
T 2iwa_A 90 IYDRRTLSN-IKNFTHQ-MK---DGWGLA-TDGKILYGSDG----------TSILYEIDPHTF-KLIKKHNVK------- 145 (266)
T ss_dssp EEETTTTEE-EEEEECC-SS---SCCEEE-ECSSSEEEECS----------SSEEEEECTTTC-CEEEEEECE-------
T ss_pred EEECCCCcE-EEEEECC-CC---CeEEEE-ECCCEEEEECC----------CCeEEEEECCCC-cEEEEEEEC-------
Confidence 999765432 1233322 12 223333 34558998754 278999999831 122233221
Q ss_pred CCCCCCCCcc-ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCe-EEEcCCCC--------CCCCCCcceEEE
Q 048754 521 QSAVVPPPRL-DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSW-RILNVPGQ--------PPKFAWGHSTCV 590 (625)
Q Consensus 521 ~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W-~~v~~~~~--------~p~~r~~~~~~~ 590 (625)
..+.+.. -..+... ++++|+--. ..++|.+.|+ .+.+= ..+...+. .+..-.-.+.+.
T Consensus 146 ---~~~~p~~~~nele~~-dg~lyvn~~------~~~~V~vID~--~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 146 ---YNGHRVIRLNELEYI-NGEVWANIW------QTDCIARISA--KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp ---ETTEECCCEEEEEEE-TTEEEEEET------TSSEEEEEET--TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred ---CCCcccccceeEEEE-CCEEEEecC------CCCeEEEEEC--CCCcEEEEEECCCcccccccccccccCceEEEEE
Confidence 1111111 1122333 778887633 2569999999 44432 12221111 111111244445
Q ss_pred EC-CcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 591 VG-GTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 591 ~~-~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.. ++++||-|+.. +.++++++.+.
T Consensus 214 ~~~~~~lfVTgk~~------~~v~~i~l~~~ 238 (266)
T 2iwa_A 214 DQENKRIFVTGKLW------PKLFEIKLHLV 238 (266)
T ss_dssp ETTTTEEEEEETTC------SEEEEEEEEEC
T ss_pred cCCCCEEEEECCCC------CeEEEEEEecc
Confidence 54 46899988744 45566666543
|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0024 Score=51.77 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=36.8
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIG 237 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~ 237 (625)
.++.+..++|+|+++++++||+ +|++|..+.+++||++...+.
T Consensus 17 ~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~ 60 (121)
T 3f1p_B 17 RHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLR 60 (121)
T ss_dssp EECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHH
T ss_pred EECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHH
Confidence 3367777789999999999999 889999999999999977653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.73 Score=44.33 Aligned_cols=175 Identities=6% Similarity=-0.004 Sum_probs=81.3
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEE--ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACA--AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG 360 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~ 360 (625)
-.++++.+++.......+..+ ..++. .++.+|+.+... +.++++|+.+....-..+.... .+.
T Consensus 22 v~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~--~~~-- 86 (331)
T 3u4y_A 22 ISFFSTDTLEILNQITLGYDF-----VDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQ--SSM-- 86 (331)
T ss_dssp EEEEETTTCCEEEEEECCCCE-----EEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECS--SCC--
T ss_pred EEEEeCcccceeeeEEccCCc-----ceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCC--CCc--
Confidence 345676666664443222111 12222 244677776532 2489999987422122222111 111
Q ss_pred eeEEE-EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEE-cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceec
Q 048754 361 HTLSS-LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE-VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLS 437 (625)
Q Consensus 361 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 437 (625)
++++. -+++++| .+...+ -...++++|+.++ +... ++... ..+..+.. +++.+|+.+... +
T Consensus 87 ~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~--~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~------~ 150 (331)
T 3u4y_A 87 ADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLKN--KFISTIPIPY-----DAVGIAISPNGNGLILIDRSS------A 150 (331)
T ss_dssp CCEEECTTSSEEE-ECCCSS--SSCEEEEEETTTT--EEEEEEECCT-----TEEEEEECTTSSCEEEEEETT------T
T ss_pred cceEECCCCCEEE-EecCCC--CcccEEEEECCCC--CeEEEEECCC-----CccceEECCCCCEEEEEecCC------C
Confidence 21222 2455676 433221 1127999999887 4433 22211 11333333 344577765421 2
Q ss_pred e-EEEEecCCCCCce----EEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 438 D-TYLLDLTTDKPMW----REIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 438 ~-~~~~d~~~~~~~W----~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
. +.+|+++...... ..+.. ......++...++ .+|+.+.. ...+.+||+.+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~---------~~~v~v~d~~~ 207 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISG-----GTRPFNITFTPDGNFAFVANLI---------GNSIGILETQN 207 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECS-----SSSEEEEEECTTSSEEEEEETT---------TTEEEEEECSS
T ss_pred ceEEEEEECCCCcEeecCCccccC-----CCCccceEECCCCCEEEEEeCC---------CCeEEEEECCC
Confidence 4 6777765432111 11211 1112334444344 57776543 26788999874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.85 E-value=1.4 Score=42.57 Aligned_cols=246 Identities=12% Similarity=0.102 Sum_probs=116.9
Q ss_pred CeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCE
Q 048754 291 VCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSW 370 (625)
Q Consensus 291 ~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 370 (625)
..|+.+......+ .....++....+.+|+.|-. .-+++ ......+|+.+.... +.+-..+.+....++.
T Consensus 66 ~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~-------g~i~~--S~DgG~tW~~~~~~~-~~~~~~~~i~~~~~~~ 134 (327)
T 2xbg_A 66 QTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP-------PIMLH--TTDGGQSWSQIPLDP-KLPGSPRLIKALGNGS 134 (327)
T ss_dssp SSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET-------TEEEE--ESSTTSSCEECCCCT-TCSSCEEEEEEEETTE
T ss_pred CCCeECCCCCCCC-CccEEEEEecCCeEEEEECC-------CeEEE--ECCCCCCceECcccc-CCCCCeEEEEEECCCC
Confidence 4798875322111 12223334456788887532 11333 222236899875321 1111123444445678
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
+|+.|..+ .+++-+-.-. +|+.+... .+...+..+...++.+|++|-. + .++.-+ +.....
T Consensus 135 ~~~~~~~g------~v~~S~DgG~--tW~~~~~~---~~~~~~~~~~~~~~~~~~~g~~---G----~~~~S~-d~gG~t 195 (327)
T 2xbg_A 135 AEMITNVG------AIYRTKDSGK--NWQALVQE---AIGVMRNLNRSPSGEYVAVSSR---G----SFYSTW-EPGQTA 195 (327)
T ss_dssp EEEEETTC------CEEEESSTTS--SEEEEECS---CCCCEEEEEECTTSCEEEEETT---S----SEEEEE-CTTCSS
T ss_pred EEEEeCCc------cEEEEcCCCC--CCEEeecC---CCcceEEEEEcCCCcEEEEECC---C----cEEEEe-CCCCCc
Confidence 88877521 2443322223 79988653 2223344444445567766521 1 344433 121345
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL 530 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~ 530 (625)
|+.+.. +.+...+.++...++.+|+.+.. ..+++.+.+ ...+|+.+... ..+....
T Consensus 196 W~~~~~---~~~~~~~~~~~~~~g~~~~~~~~----------G~~~~s~~D-~G~tW~~~~~~----------~~~~~~~ 251 (327)
T 2xbg_A 196 WEPHNR---TTSRRLHNMGFTPDGRLWMIVNG----------GKIAFSDPD-NSENWGELLSP----------LRRNSVG 251 (327)
T ss_dssp CEEEEC---CSSSCEEEEEECTTSCEEEEETT----------TEEEEEETT-EEEEECCCBCT----------TSSCCSC
T ss_pred eeECCC---CCCCccceeEECCCCCEEEEeCC----------ceEEEecCC-CCCeeEeccCC----------cccCCcc
Confidence 998853 33444455555455678877542 223333222 14588876421 0011111
Q ss_pred ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.+......++.+|++|+. ..+++-.- .-.+|+.+......|. ..+.+...+++.+++.|.
T Consensus 252 ~~~v~~~~~~~~~~~g~~-------g~i~~S~D--gG~tW~~~~~~~~~~~--~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAGGA-------GALLCSQD--GGQTWQQDVDVKKVPS--NFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp EEEEEESSSSCEEEEEST-------TCEEEESS--TTSSCEECGGGTTSSS--CCCEEEEEETTEEEEECS
T ss_pred eEEEEecCCCEEEEEeCC-------CeEEEeCC--CCcccEEcCccCCCCC--CeEEEEEECCCceEEEcC
Confidence 223333336678888762 23433221 4679998863211221 224444445556666653
|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.00055 Score=56.11 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=42.2
Q ss_pred eeecccccCCcchhhhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhH--HHHhhhcccC
Q 048754 166 FSEAKIDLNHVSYPVFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEV--LAHNILSRLT 229 (625)
Q Consensus 166 Dit~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~--~~~~~~~~~~ 229 (625)
++|++|++++ +++..+++++..++.+.. ++|.+..++++|+++++++||+ +++ +|..+..+++
T Consensus 1 ~~t~r~~~e~-~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~ 69 (126)
T 3bwl_A 1 SNAERKRREK-RLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF 69 (126)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC
T ss_pred CchhHHHHHH-HHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC
Confidence 4677777655 233444555555544433 3476777889999999999999 677 3566666665
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.80 E-value=1.5 Score=44.36 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=114.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+..++.|+.+. .+.++|+.+.... ..+. .. ...-.+..+++ ..++.|+.+ ..+.+||+.+.
T Consensus 208 ~~~~l~s~s~dg------~i~~wd~~~~~~~-~~~~-~~----~~~v~~~~~~~-~~l~~~~~d-----g~i~iwd~~~~ 269 (445)
T 2ovr_B 208 HEKRVVSGSRDA------TLRVWDIETGQCL-HVLM-GH----VAAVRCVQYDG-RRVVSGAYD-----FMVKVWDPETE 269 (445)
T ss_dssp ETTEEEEEETTS------EEEEEESSSCCEE-EEEE-CC----SSCEEEEEECS-SCEEEEETT-----SCEEEEEGGGT
T ss_pred cCCEEEEEeCCC------EEEEEECCCCcEE-EEEc-CC----cccEEEEEECC-CEEEEEcCC-----CEEEEEECCCC
Confidence 344455665432 3888888763211 1221 11 11122333444 456666643 35888998876
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.-. .+... .. .-.++.+++ ..++.|+.+ ..+.+||+.+...... +.. ... ........+
T Consensus 270 --~~~~~~~~~---~~--~v~~~~~~~-~~l~~~~~d------~~i~i~d~~~~~~~~~-~~~--~~~---~v~~~~~~~ 329 (445)
T 2ovr_B 270 --TCLHTLQGH---TN--RVYSLQFDG-IHVVSGSLD------TSIRVWDVETGNCIHT-LTG--HQS---LTSGMELKD 329 (445)
T ss_dssp --EEEEEECCC---SS--CEEEEEECS-SEEEEEETT------SCEEEEETTTCCEEEE-ECC--CCS---CEEEEEEET
T ss_pred --cEeEEecCC---CC--ceEEEEECC-CEEEEEeCC------CeEEEEECCCCCEEEE-EcC--Ccc---cEEEEEEeC
Confidence 332 22211 11 122334445 455556532 3688899866542222 221 111 122333444
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+.+. ..+.... ..........++.. ++.+++.|+.
T Consensus 330 -~~l~~~~~d---------g~i~vwd~~~~----~~~~~~~---------~~~~~~~~v~~~~~-~~~~l~s~~~----- 380 (445)
T 2ovr_B 330 -NILVSGNAD---------STVKIWDIKTG----QCLQTLQ---------GPNKHQSAVTCLQF-NKNFVITSSD----- 380 (445)
T ss_dssp -TEEEEEETT---------SCEEEEETTTC----CEEEEEC---------STTSCSSCEEEEEE-CSSEEEEEET-----
T ss_pred -CEEEEEeCC---------CeEEEEECCCC----cEEEEEc---------cCCCCCCCEEEEEE-CCCEEEEEeC-----
Confidence 455666543 57888998732 2232220 00112222344555 5667777775
Q ss_pred CCCcEEEEeCCCCCCCeEEEc-CCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILN-VPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~-~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
...|.+||+ .+.+....- .....+..-.-.++...+++.+++.|+.++.. ...+++++++.+
T Consensus 381 -dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~--~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 -DGTVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--ETKLLVLDFDVD 443 (445)
T ss_dssp -TSEEEEEET--TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--CCEEEEEECCCC
T ss_pred -CCeEEEEEC--CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC--ccEEEEEECCCC
Confidence 347889998 444433221 10001111111233334567788889888764 356788887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.78 E-value=1.2 Score=49.00 Aligned_cols=216 Identities=9% Similarity=0.027 Sum_probs=107.2
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCC-CCc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPL-PRS 411 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~-~r~ 411 (625)
+++|+..+ .+++.+.....+. ..-.+++...++.|++... +-+++||+.+. +|..+.... .+. ...
T Consensus 429 l~~~~~~~--~~~~~~~~~~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~ 496 (781)
T 3v9f_A 429 ISYYNTRL--KKFQIIELEKNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASK--KVIHHYDTSNSQLLENF 496 (781)
T ss_dssp EEEECSSS--CEEEECCSTTTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSS--SCCEEECTTTSSCSCSC
T ss_pred EEEEcCCC--CcEEEeccCCCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCC--eEEecccCcccccccce
Confidence 88898876 5777663221111 1222333333556776532 34899999887 555443211 011 111
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC-CCCCCCCcceEEEECCcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS-WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~ 490 (625)
-.+.+.-.++.++|.. . . .-+++||+.+.. ++.+... +.+.. .-.+.+...++.|++...
T Consensus 497 i~~i~~d~~g~lWigt-~-~-----~Gl~~~~~~~~~--~~~~~~~~~l~~~-~i~~i~~d~~g~lWi~T~--------- 557 (781)
T 3v9f_A 497 VRSIAQDSEGRFWIGT-F-G-----GGVGIYTPDMQL--VRKFNQYEGFCSN-TINQIYRSSKGQMWLATG--------- 557 (781)
T ss_dssp EEEEEECTTCCEEEEE-S-S-----SCEEEECTTCCE--EEEECTTTTCSCS-CEEEEEECTTSCEEEEET---------
T ss_pred eEEEEEcCCCCEEEEE-c-C-----CCEEEEeCCCCe--EEEccCCCCCCCC-eeEEEEECCCCCEEEEEC---------
Confidence 1222233445677632 1 1 247889976654 7766532 12211 112232333457777522
Q ss_pred ccCce-EEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC
Q 048754 491 RSGES-YTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS 569 (625)
Q Consensus 491 ~~~~~-~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~ 569 (625)
..+ ++||+. +.++...... ...|.... .+.+.-.++.|++.+ .+-+.+||+ .+.+
T Consensus 558 --~Glv~~~d~~--~~~~~~~~~~---------~gl~~~~i-~~i~~d~~g~lW~~t--------~~Gl~~~~~--~~~~ 613 (781)
T 3v9f_A 558 --EGLVCFPSAR--NFDYQVFQRK---------EGLPNTHI-RAISEDKNGNIWAST--------NTGISCYIT--SKKC 613 (781)
T ss_dssp --TEEEEESCTT--TCCCEEECGG---------GTCSCCCC-CEEEECSSSCEEEEC--------SSCEEEEET--TTTE
T ss_pred --CCceEEECCC--CCcEEEcccc---------CCCCCceE-EEEEECCCCCEEEEc--------CCceEEEEC--CCCc
Confidence 345 677777 4455555432 11222222 344444467788763 235889999 5777
Q ss_pred eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 570 WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 570 W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+........++...+...++....+.-+.|||.++
T Consensus 614 ~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 614 FYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp EEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE
T ss_pred eEEecccCCccccccccCceEECCCCEEEEECCCc
Confidence 77765433344443333333333234556677543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=1.5 Score=42.13 Aligned_cols=212 Identities=11% Similarity=0.029 Sum_probs=92.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+.+... ..+.+|++...+.++..+.....+. .. ..++.. +++.+|+.+..+ +.+.+||+..
T Consensus 49 g~~l~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 115 (343)
T 1ri6_A 49 KRYLYVGVRPE------FRVLAYRIAPDDGALTFAAESALPG-SL-THISTDHQGQFVFVGSYNA-----GNVSVTRLED 115 (343)
T ss_dssp SSEEEEEETTT------TEEEEEEECTTTCCEEEEEEEECSS-CC-SEEEECTTSSEEEEEETTT-----TEEEEEEEET
T ss_pred CCEEEEeecCC------CeEEEEEecCCCCceeeccccccCC-CC-cEEEEcCCCCEEEEEecCC-----CeEEEEECCC
Confidence 44566655421 3477888763225666542111111 11 222322 345566665422 3578888742
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC-CCCceEEcC--CCCCCCCCCcceEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT-DKPMWREIP--TSWSPPSRLGHSLS 469 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~~~W~~~~--~~~~p~~r~~~~~~ 469 (625)
+ .....+... +....-+..+.. +++.+|+.+... ..+.+||+.+ .. ...+. ....+....-..++
T Consensus 116 ~-~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 116 G-LPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp T-EEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEE
T ss_pred C-ccccccccc--cCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCc--eeeecccccccCCCCCcceEE
Confidence 2 012221111 001111223233 445677654221 3688889865 33 43221 00011111112233
Q ss_pred EECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC---ccceEEEEe-cCC-EEE
Q 048754 470 VYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP---RLDHVAVSM-PCG-RII 543 (625)
Q Consensus 470 ~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~---r~~~~~~~~-~~~-~l~ 543 (625)
...++ .+|+.+.. ...+.+||+...+..+..+.... ..+.. ......+.+ .++ .||
T Consensus 185 ~~pdg~~l~~~~~~---------~~~i~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 185 FHPNEQYAYCVNEL---------NSSVDVWELKDPHGNIECVQTLD---------MMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp ECTTSSEEEEEETT---------TTEEEEEESSCTTSCCEEEEEEE---------CSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ECCCCCEEEEEeCC---------CCEEEEEEecCCCCcEEEEeecc---------ccCccccccCCccceEECCCCCEEE
Confidence 33333 57766533 25788888853233444333221 01111 111222333 344 566
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
+.+.. .+.+.+||+...+.++..+.
T Consensus 247 v~~~~------~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 247 ACDRT------ASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEETT------TTEEEEEEECTTSCCEEEEE
T ss_pred EEecC------CCEEEEEEEcCCCCceEEee
Confidence 65432 35788888842245566553
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.46 Score=52.28 Aligned_cols=232 Identities=8% Similarity=0.005 Sum_probs=110.0
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.||.+. .+.+||+.. .++..+..-. .....-.+..+ .+ +..++.|+.++ .+.++|+.
T Consensus 21 g~~latg~~dg------~I~vwd~~~--~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~ 85 (753)
T 3jro_A 21 GKRLATCSSDK------TIKIFEVEG--ETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEE 85 (753)
T ss_dssp SCCEEEEETTT------EEEEEEEET--TEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEE
T ss_pred CCeEEEEECCC------cEEEEecCC--CCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECC
Confidence 44555665432 378888775 3455442111 11111222223 22 45667777543 58889988
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cC--CEEEEEcCcCCCCceeceEEEEecCCCCCce-EEcCCCCCCCCCCcceE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EG--SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW-REIPTSWSPPSRLGHSL 468 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~~~ 468 (625)
++ .|..+........ .-.++.+ .+ +.+++.|+.+ ..+.+||+.+....- ..+.. .+.+ -.++
T Consensus 86 ~~--~~~~~~~~~~h~~--~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~--~~~~--v~~l 151 (753)
T 3jro_A 86 NG--RWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA--HAIG--VNSA 151 (753)
T ss_dssp TT--EEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEEC--CSSC--EEEE
T ss_pred CC--cccccccccCCCC--CeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeec--CCCc--eEEE
Confidence 87 7765543211111 1222333 22 4567777632 367888875542111 11111 1111 1112
Q ss_pred EEEC-------------CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE
Q 048754 469 SVYG-------------RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV 535 (625)
Q Consensus 469 ~~~~-------------~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 535 (625)
.... ++.+++.|+.+ ..+.+||+.+....+..+... ........++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~------------~~h~~~V~~l 210 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDV 210 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEE
T ss_pred EecCcccccccccccCCCCCEEEEEECC---------CeEEEEeccCCcccceeeeee------------cCCCCcEEEE
Confidence 1211 24566666653 567788876544455555544 1111122333
Q ss_pred E-ecC---CEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 536 S-MPC---GRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 536 ~-~~~---~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
. ..+ +++++.||.+ ..+.+||+......+...... .......-.++...+++.+++.||.++
T Consensus 211 ~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~Dg 276 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDN 276 (753)
T ss_dssp EECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSS-SSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred EeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEec-cCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence 3 334 6888888863 467788874222222222111 111111223444555677888887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.44 Score=46.04 Aligned_cols=204 Identities=10% Similarity=-0.020 Sum_probs=88.5
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC--
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD-- 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~-- 392 (625)
+.+|+.++.+ +.+++|++... .++..+....... .-..++.. +++++|+.+..+ ..+.+|++.
T Consensus 5 ~~l~~~~~~~------~~v~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~ 70 (343)
T 1ri6_A 5 QTVYIASPES------QQIHVWNLNHE-GALTLTQVVDVPG--QVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPD 70 (343)
T ss_dssp EEEEEEEGGG------TEEEEEEECTT-SCEEEEEEEECSS--CCCCEEECTTSSEEEEEETTT-----TEEEEEEECTT
T ss_pred EEEEEeCCCC------CeEEEEEECCC-CcEEEeeeEecCC--CCceEEECCCCCEEEEeecCC-----CeEEEEEecCC
Confidence 4566665432 23788887531 3444432111111 11122222 355566655421 357777776
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
++ ++..+.....+. .. ...+.. +++.+|+.+. .. ..+.+||+.... ....+.. .+....-++++..
T Consensus 71 ~~--~~~~~~~~~~~~-~~-~~~~~s~dg~~l~~~~~-~~-----~~i~~~d~~~~~-~~~~~~~--~~~~~~~~~~~~s 137 (343)
T 1ri6_A 71 DG--ALTFAAESALPG-SL-THISTDHQGQFVFVGSY-NA-----GNVSVTRLEDGL-PVGVVDV--VEGLDGCHSANIS 137 (343)
T ss_dssp TC--CEEEEEEEECSS-CC-SEEEECTTSSEEEEEET-TT-----TEEEEEEEETTE-EEEEEEE--ECCCTTBCCCEEC
T ss_pred CC--ceeeccccccCC-CC-cEEEEcCCCCEEEEEec-CC-----CeEEEEECCCCc-ccccccc--ccCCCCceEEEEC
Confidence 55 555443211111 11 222222 4445666543 11 357778863111 1222211 0111112333344
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee--eccccCcCCCCCCCCCCccceEEEEecCC-EEEEEec
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE--CNAFTGVGSQSAVVPPPRLDHVAVSMPCG-RIIIFGG 547 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~--~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG 547 (625)
.++ .+|+.+.. ...+.+||+.+ ..+...+. ... .+.......+....++ .+|+.+.
T Consensus 138 ~dg~~l~~~~~~---------~~~v~~~d~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 138 PDNRTLWVPALK---------QDRICLFTVSD-DGHLVAQDPAEVT----------TVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp TTSSEEEEEEGG---------GTEEEEEEECT-TSCEEEEEEEEEE----------CSTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCCEEEEecCC---------CCEEEEEEecC-CCceeeecccccc----------cCCCCCcceEEECCCCCEEEEEeC
Confidence 333 56665422 26788999874 13454433 210 0111111122333344 4666653
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCeEE
Q 048754 548 SIAGLHSPSQLFLLDPSEEKPSWRI 572 (625)
Q Consensus 548 ~~~~~~~~~~v~~~d~~~~~~~W~~ 572 (625)
. .+.+.+|++...+..+..
T Consensus 198 ~------~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 198 L------NSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp T------TTEEEEEESSCTTSCCEE
T ss_pred C------CCEEEEEEecCCCCcEEE
Confidence 3 457888888422344543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=2.4 Score=45.71 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=73.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CCc--cceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PRS--WHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+... .+.++.+|..|++..|+.-....... ... ......+.++++|+... -..++
T Consensus 64 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~ 130 (668)
T 1kv9_A 64 FHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLI 130 (668)
T ss_dssp EETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEE
T ss_pred EECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEE
Confidence 34778998865 24699999999988999654321000 000 01122334667877432 13689
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|+.-............+.++.++ .+|+..+....+ ....++.||..+....|+.-
T Consensus 131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~----~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYG----VRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTC----CBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcC----CCCEEEEEECCCCcEEEEec
Confidence 999999999998754211111122223444544 776643221111 13678999998877789864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.72 E-value=2.2 Score=46.17 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=73.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC---CC--ccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL---PR--SWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~---~r--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
+.++.||+.+. .+.++.+|..|++..|+.-....... .. .......+.++++|+... -..++
T Consensus 68 v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~ 134 (689)
T 1yiq_A 68 VVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLE 134 (689)
T ss_dssp EETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEE
T ss_pred EECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEE
Confidence 34778998765 24699999999988999644221000 00 001122344667877432 13689
Q ss_pred EEecCCCCCceEEcCC-CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPT-SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|+.-.. ..........+.++.++ .+|+-.+....+. ...++.||..+....|+.-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~----~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGV----RGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCC----BCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCC----CCEEEEEECCCCcEEEEec
Confidence 9999999889987542 11111122223445554 7766332211111 3678999999877789864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.9 Score=41.35 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=73.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+|+.++.+. .+.++|+.+ .+.......+ . ....++.. +++++|+.+... +.++++|+.+
T Consensus 9 ~~~~~v~~~~~~------~v~~~d~~~--~~~~~~~~~~--~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~ 71 (331)
T 3u4y_A 9 SNFGIVVEQHLR------RISFFSTDT--LEILNQITLG--Y--DFVDTAITSDCSNVVVTSDFC-----QTLVQIETQL 71 (331)
T ss_dssp CCEEEEEEGGGT------EEEEEETTT--CCEEEEEECC--C--CEEEEEECSSSCEEEEEESTT-----CEEEEEECSS
T ss_pred CCEEEEEecCCC------eEEEEeCcc--cceeeeEEcc--C--CcceEEEcCCCCEEEEEeCCC-----CeEEEEECCC
Confidence 467788776432 489999887 4554332111 1 11122322 455677776532 3799999988
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEE-cCCCCCCCCCCcceEEEE
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWRE-IPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~p~~r~~~~~~~~ 471 (625)
++..-..+.....| .++.+.. +++.+| .+... + ....++++|+.+.. ... ++. ....++++..
T Consensus 72 ~~~~~~~~~~~~~~----~~~~~~s~dg~~l~-~~~~~-~--~~~~i~v~d~~~~~--~~~~~~~-----~~~~~~~~~s 136 (331)
T 3u4y_A 72 EPPKVVAIQEGQSS----MADVDITPDDQFAV-TVTGL-N--HPFNMQSYSFLKNK--FISTIPI-----PYDAVGIAIS 136 (331)
T ss_dssp SSCEEEEEEECSSC----CCCEEECTTSSEEE-ECCCS-S--SSCEEEEEETTTTE--EEEEEEC-----CTTEEEEEEC
T ss_pred CceeEEecccCCCC----ccceEECCCCCEEE-EecCC-C--CcccEEEEECCCCC--eEEEEEC-----CCCccceEEC
Confidence 84313333322112 1212222 455566 33211 1 11278999986654 322 221 1112455554
Q ss_pred CCc-EEEEEcCCcCCCCcccccCc-eEEEEcCC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGE-SYTIDLGD 502 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~-~~~~d~~~ 502 (625)
.++ .+|+.+.. ... +++|++..
T Consensus 137 pdg~~l~~~~~~---------~~~~i~~~~~~~ 160 (331)
T 3u4y_A 137 PNGNGLILIDRS---------SANTVRRFKIDA 160 (331)
T ss_dssp TTSSCEEEEEET---------TTTEEEEEEECT
T ss_pred CCCCEEEEEecC---------CCceEEEEEECC
Confidence 444 47776443 145 77787764
|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0054 Score=49.23 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=37.0
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhH
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSV 239 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~ 239 (625)
+.+..++|+|+++++++||+ +|++|..+..++||++...+...
T Consensus 16 d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~ 59 (117)
T 3f1p_A 16 SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKS 59 (117)
T ss_dssp CTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHH
T ss_pred CCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHH
Confidence 66777779999999999999 88999999999999998766433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=2.1 Score=45.25 Aligned_cols=133 Identities=11% Similarity=0.157 Sum_probs=74.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEec-cCCCCceEEcccCCC---CCCc---cceeEEEE-cCCE----EEEEcc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNL-DAANPEWRRVSVKSS---PPGR---WGHTLSSL-NGSW----LVVFGG 376 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~---p~~r---~~~~~~~~-~~~~----iyv~GG 376 (625)
.+.++.++.||+.+.. .+.++++|. .+-+..|+.-..... +.++ ...+.++. .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp SCCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred eccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 4566789999998763 224999999 776678986321110 0011 11122320 3445 776543
Q ss_pred CCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 377 CGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 377 ~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-.....+......+-++. ++.+|+-.+..+ ......++.||..+.+..|+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence 136899999999888985432110101111222334 557776432111 01235789999999888898654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.35 E-value=1.7 Score=40.44 Aligned_cols=232 Identities=13% Similarity=0.015 Sum_probs=107.1
Q ss_pred CCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC-CCCEEEEcCCCCCCCC
Q 048754 331 MDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA-KQPTWIEVSGGAPPLP 409 (625)
Q Consensus 331 ~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t-~~~~W~~~~~~~~p~~ 409 (625)
-..++++|+.+ .+...+... ...-.+.+...+++.+++++. ..++++|+.+ . ....+... +..
T Consensus 21 ~~~i~~~d~~~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~--~~~~~~~~--~~~ 84 (297)
T 2ojh_A 21 RSSIEIFNIRT--RKMRVVWQT----PELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDP--SPEKVDTG--FAT 84 (297)
T ss_dssp CEEEEEEETTT--TEEEEEEEE----SSCCEEEEECTTSSEEEEEET------TEEEEEESSSCC--SCEECCCT--TCC
T ss_pred ceeEEEEeCCC--CceeeeccC----CcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCC--CceEeccc--ccc
Confidence 34588999877 455544211 111122332333445555541 3699999988 6 45555432 111
Q ss_pred CccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCc
Q 048754 410 RSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHL 488 (625)
Q Consensus 410 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~ 488 (625)
..-.......+++.+++++.... ....+|.+++.+.. ...+... . . ...+....++ .|++.++.+.
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~--~~~~~~~--~-~--~~~~~~spdg~~l~~~~~~~~---- 151 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGT--PRLMTKN--L-P--SYWHGWSPDGKSFTYCGIRDQ---- 151 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCC--CEECCSS--S-S--EEEEEECTTSSEEEEEEEETT----
T ss_pred ccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCc--eEEeecC--C-C--ccceEECCCCCEEEEEECCCC----
Confidence 11122223334445555542222 23578888875544 4554431 1 1 2233333333 4554444321
Q ss_pred ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC
Q 048754 489 RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP 568 (625)
Q Consensus 489 ~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~ 568 (625)
...+|.+++. +.....+... .... .......+++.+++++... ....+|.+++ ...
T Consensus 152 ---~~~l~~~~~~--~~~~~~~~~~-------------~~~~-~~~~~s~dg~~l~~~~~~~---~~~~i~~~~~--~~~ 207 (297)
T 2ojh_A 152 ---VFDIYSMDID--SGVETRLTHG-------------EGRN-DGPDYSPDGRWIYFNSSRT---GQMQIWRVRV--DGS 207 (297)
T ss_dssp ---EEEEEEEETT--TCCEEECCCS-------------SSCE-EEEEECTTSSEEEEEECTT---SSCEEEEEET--TSS
T ss_pred ---ceEEEEEECC--CCcceEcccC-------------CCcc-ccceECCCCCEEEEEecCC---CCccEEEECC--CCC
Confidence 1367777776 3344333221 1111 2222333555444444211 2457888887 344
Q ss_pred CeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCC-----ccCceEEEEccCC
Q 048754 569 SWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEW-----VLNELHELCLASK 620 (625)
Q Consensus 569 ~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~-----~~~d~~~~~~~~~ 620 (625)
....+... ..........++++.+++++.++... ....++++++.+.
T Consensus 208 ~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 208 SVERITDS-----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp CEEECCCC-----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CcEEEecC-----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 55444311 11112233334566666666543221 1255778877553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=3.4 Score=45.57 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=106.4
Q ss_pred eEEEeccCCCCceEEcccCCCCCC-ccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCC---
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPG-RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLP--- 409 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~--- 409 (625)
+++||..+ .++..+.......+ ..-.+++...++.|++... +-+++||+.++ +|..+.....+..
T Consensus 429 l~~~d~~~--~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~--~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 429 LSILHRNS--GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQR--SFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTT--CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTT--EEEECCBCTTCCBCCC
T ss_pred eeEEeCCC--CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCC--eEEEccccccccccCC
Confidence 88999876 46666532111111 1112233223455666542 24899999988 8887753211111
Q ss_pred CccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC----CCCCCCCCcceEEEECCcEEEEEcCCcCC
Q 048754 410 RSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT----SWSPPSRLGHSLSVYGRTKVLMFGGLAKS 485 (625)
Q Consensus 410 r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 485 (625)
..-.+.+...++.+++... .-+++||+.+.. + .+.. ...+ ...-.+.+...++.|++...
T Consensus 498 ~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~--~-~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~---- 561 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLD--I-QKASILPVSNVT-KLFTNCIYEASNGIIWVGTR---- 561 (795)
T ss_dssp CCEEEEEECTTCCEEEEES--------SCEEEEEEETTE--E-EECCCSCSCGGG-GSCEEEEEECTTSCEEEEES----
T ss_pred ceEEEEEECCCCCEEEEeC--------CceEEEeCCCCe--E-EEecCCCCCCCC-CCeeEEEEECCCCCEEEEeC----
Confidence 1112222224456777322 247888876654 5 3321 0111 11112222224457777421
Q ss_pred CCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCC
Q 048754 486 GHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSE 565 (625)
Q Consensus 486 ~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~ 565 (625)
..+++||+. +.++....... + .|... ..+.+.-.+++|++.+. .-+.+||+
T Consensus 562 -------~Gl~~~d~~--~~~~~~~~~~~--------g-l~~~~-i~~i~~d~~g~lWi~t~--------~Gl~~~~~-- 612 (795)
T 4a2l_A 562 -------EGFYCFNEK--DKQIKRYNTTN--------G-LPNNV-VYGILEDSFGRLWLSTN--------RGISCFNP-- 612 (795)
T ss_dssp -------SCEEEEETT--TTEEEEECGGG--------T-CSCSC-EEEEEECTTSCEEEEET--------TEEEEEET--
T ss_pred -------CCceeECCC--CCcEEEeCCCC--------C-Cchhh-eEEEEECCCCCEEEEcC--------CceEEEcC--
Confidence 357889987 44666554320 1 22221 22333333577888642 36889999
Q ss_pred CCCCeEEEcCCCCCCCCCCc-ceEEEECCcEEEEEcCcCC
Q 048754 566 EKPSWRILNVPGQPPKFAWG-HSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 566 ~~~~W~~v~~~~~~p~~r~~-~~~~~~~~~~i~i~GG~~~ 604 (625)
.+.++........++...+. .+++...++ -+.|||.++
T Consensus 613 ~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G-~l~~g~~~G 651 (795)
T 4a2l_A 613 ETEKFRNFTESDGLQSNQFNTASYCRTSVG-QMYFGGING 651 (795)
T ss_dssp TTTEEEEECGGGTCSCSCEEEEEEEECTTS-CEEEEETTE
T ss_pred CCCcEEEcCCcCCCccccCccCceeECCCC-eEEEecCCc
Confidence 57777766543334444433 233444444 455666543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.32 E-value=1.5 Score=41.93 Aligned_cols=220 Identities=15% Similarity=0.069 Sum_probs=102.7
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+ ..+.+||+.+. +............. -.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 109 ~~~l~~~~~d------~~i~~~d~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~- 173 (337)
T 1gxr_A 109 GCTLIVGGEA------STLSIWDLAAP--TPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD-----GNIAVWDLHNQ- 173 (337)
T ss_dssp SSEEEEEESS------SEEEEEECCCC----EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-----SCEEEEETTTT-
T ss_pred CCEEEEEcCC------CcEEEEECCCC--CcceeeecccCCCc-eEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC-
Confidence 4455555542 23888888763 32222101111111 1222223344566666643 35889999877
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
+....-.. ..... .+.+...++..++.|+.+ ..+.+||+.+...... +. .+.+ -.++....++.
T Consensus 174 -~~~~~~~~--~~~~i-~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~-~~---~~~~--v~~~~~s~~~~ 237 (337)
T 1gxr_A 174 -TLVRQFQG--HTDGA-SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQ-HD---FTSQ--IFSLGYCPTGE 237 (337)
T ss_dssp -EEEEEECC--CSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEE-EE---CSSC--EEEEEECTTSS
T ss_pred -ceeeeeec--ccCce-EEEEECCCCCEEEEEecC------CcEEEEECCCCceEee-ec---CCCc--eEEEEECCCCC
Confidence 44322211 11111 222233344566666532 3688899765431111 11 1111 12333334446
Q ss_pred EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCC
Q 048754 476 VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSP 555 (625)
Q Consensus 476 l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~ 555 (625)
++++|+.+ ..+.+||+.+. .-..+.. ....-.++....++++++.|+. .
T Consensus 238 ~l~~~~~~---------~~i~~~~~~~~--~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~------d 286 (337)
T 1gxr_A 238 WLAVGMES---------SNVEVLHVNKP--DKYQLHL--------------HESCVLSLKFAYCGKWFVSTGK------D 286 (337)
T ss_dssp EEEEEETT---------SCEEEEETTSS--CEEEECC--------------CSSCEEEEEECTTSSEEEEEET------T
T ss_pred EEEEEcCC---------CcEEEEECCCC--CeEEEcC--------------CccceeEEEECCCCCEEEEecC------C
Confidence 66666542 57888998742 2111111 1111123333335677777775 3
Q ss_pred CcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 556 SQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 556 ~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.+||+. +..-..... ....-.++....++..++.|+.++
T Consensus 287 g~i~~~~~~--~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 287 NLLNAWRTP--YGASIFQSK-----ESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp SEEEEEETT--TCCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTS
T ss_pred CcEEEEECC--CCeEEEEec-----CCCcEEEEEECCCCCEEEEecCCC
Confidence 478899984 333322211 111123344445667888887654
|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0053 Score=49.51 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=35.1
Q ss_pred hhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccC
Q 048754 180 VFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLT 229 (625)
Q Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~ 229 (625)
..+++++..++.+.. ++|.+..++++|+++++++||+ +|++|..+..+.+
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~ 61 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSR 61 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTT
T ss_pred HhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCC
Confidence 445556666654433 3476777779999999999999 8888776654433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=3.1 Score=43.98 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=72.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEEC-CCCCCEEEEcCCCCC---CCCCcc--ceEEEE--cCCE----EEEEcCcCCCC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDL-DAKQPTWIEVSGGAP---PLPRSW--HSSCII--EGSK----LVVSGGCTDAG 433 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~-~t~~~~W~~~~~~~~---p~~r~~--~~~~~~--~~~~----iyv~GG~~~~~ 433 (625)
+.++.||+.+.+ .+.++.+|. .+++..|+.-..... +..+.. .....+ .+++ +|+...
T Consensus 60 v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----- 129 (599)
T 1w6s_A 60 VVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----- 129 (599)
T ss_dssp EETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred EECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-----
Confidence 347789998753 236999999 899889996543210 001110 112233 3555 777432
Q ss_pred ceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 434 VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 434 ~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
-..++.+|.++.+..|+.-.....+......+.++.++ .+|+-.+....+. ...++.||..+....|+.-.
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g-~V~vg~~g~e~g~----~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 --DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKD-KVIIGSSGAELGV----RGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEECCBCGGGTC----CCEEEEEETTTCCEEEEEES
T ss_pred --CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECC-EEEEEecccccCC----CCeEEEEECCCCcEEEEEcC
Confidence 13689999999998998643210010111223344554 7765432211111 36788999998777898654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.16 E-value=4.4 Score=43.75 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.6
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC-----c---cceeEEEEcCCEEEEEccCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG-----R---WGHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~-----r---~~~~~~~~~~~~iyv~GG~~~~ 380 (625)
.+.++.++.||+.... +.++.+|..+-+..|+.-. ..+.. + ...+.+ +.+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~v~v~~~---- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDP--QSDRHRAGEACCDAVNRGVA-VWKGKVYVGVL---- 129 (689)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTCCEEEEECC--CCCGGGGGGCTTCSCCCCCE-EETTEEEEECT----
T ss_pred ecCEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcC--CCCccccccccccCCCCccE-EECCEEEEEcc----
Confidence 4456789999998753 2389999987767898531 11110 0 011223 34667877643
Q ss_pred CccccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 381 GLLNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 381 ~~~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
-..++.+|..|++..|+.-.. ..........+.++. ++.+|+-.+... ......++.||..+.+..|+.-
T Consensus 130 --dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 --DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp --TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence 236899999999888986542 111111112223344 557777332111 1133579999999998889864
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=2.9 Score=45.00 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=76.3
Q ss_pred ccceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC--------ccceeEEEEcCCEEEEEccCCC
Q 048754 308 NFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG--------RWGHTLSSLNGSWLVVFGGCGR 379 (625)
Q Consensus 308 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~--------r~~~~~~~~~~~~iyv~GG~~~ 379 (625)
..+-++.++.||+.... +.++.+|..+-+..|+.-. ..+.. ....+.+ +.+++||+...
T Consensus 59 ~~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~--- 125 (668)
T 1kv9_A 59 EATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDP--EVAKVKARTSCCDAVNRGVA-LWGDKVYVGTL--- 125 (668)
T ss_dssp CCCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECC--CCCGGGGGGCTTCSCCCCCE-EEBTEEEEECT---
T ss_pred ccCCEEECCEEEEECCC-------CeEEEEECCCChhceEECC--CCCccccccccccCCccceE-EECCEEEEEcC---
Confidence 34556789999998753 2389999887667898531 11110 0011223 34667877643
Q ss_pred CCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 380 QGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 380 ~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
...++.+|..|++..|+.-............+.++. ++.+|+..+... ......++.||+.+.+..|+.-.
T Consensus 126 ---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 ---DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEecc
Confidence 136999999999889986542211111222223334 667777432111 11335799999999998898643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.02 E-value=2.4 Score=41.21 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+ .++.......... ..-.++....++..++.|+.+ ..+.+||+.+.
T Consensus 63 ~~~~l~~~~~dg------~i~vwd~~~--~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~ 128 (372)
T 1k8k_C 63 DSNRIVTCGTDR------NAYVWTLKG--RTWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-----RVISICYFEQE 128 (372)
T ss_dssp TTTEEEEEETTS------CEEEEEEET--TEEEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-----SSEEEEEEETT
T ss_pred CCCEEEEEcCCC------eEEEEECCC--CeeeeeEEeecCC-CceeEEEECCCCCEEEEEeCC-----CEEEEEEecCC
Confidence 455666666432 388889876 4554332111111 111222222344566666643 24777777665
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
...+..... ..+....-.+.+...++..++.|+.+ ..+.+||+.
T Consensus 129 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~ 172 (372)
T 1k8k_C 129 NDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAY 172 (372)
T ss_dssp TTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEECC
T ss_pred Ccceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcc
Confidence 322221111 01111111222233344566666632 357788853
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=2 Score=41.84 Aligned_cols=206 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.+||+.+ .+|..+....... ..-.+..+ .+ +.+++.|+.+ ..+.+||+.
T Consensus 69 ~~~l~s~~~dg------~v~iwd~~~--~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~ 133 (379)
T 3jrp_A 69 GTILASCSYDG------KVLIWKEEN--GRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFK 133 (379)
T ss_dssp CSEEEEEETTS------CEEEEEEET--TEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT-----SEEEEEECC
T ss_pred CCEEEEeccCC------EEEEEEcCC--CceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCC-----CcEEEEecC
Confidence 45666666532 388899887 5665543221111 11222222 22 3466666643 357888887
Q ss_pred CCCC-EEEEcCCCCCCCCCccceEEEEc-------------CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC
Q 048754 393 AKQP-TWIEVSGGAPPLPRSWHSSCIIE-------------GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW 458 (625)
Q Consensus 393 t~~~-~W~~~~~~~~p~~r~~~~~~~~~-------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~ 458 (625)
+... .-..+... + ..-.+.+... ++.+++.|+.+ ..+.+||+.+....|..+..
T Consensus 134 ~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-- 201 (379)
T 3jrp_A 134 ENGTTSPIIIDAH--A--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLEST-- 201 (379)
T ss_dssp TTSCCCEEEEECC--T--TCEEEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEE--
T ss_pred CCCceeeEEecCC--C--CceEEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEE--
Confidence 6511 11111111 0 0111111112 34566666643 25788887665544544321
Q ss_pred CCC-CCCcceEEEECC---cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEE
Q 048754 459 SPP-SRLGHSLSVYGR---TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVA 534 (625)
Q Consensus 459 ~p~-~r~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~ 534 (625)
... ...-.+++...+ +.+++.|+.+ ..+.+||+.+....+...... .......-.++
T Consensus 202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~ 262 (379)
T 3jrp_A 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWRA 262 (379)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEETT---------SCEEEEEESSTTSCCEEEESS----------SSCCSSCEEEE
T ss_pred EecccCcEeEEEECCCCCCCCeEEEEeCC---------CEEEEEeCCCCCccceeeeec----------cccCCCcEEEE
Confidence 111 111123333344 5778887754 467788877432233222111 00111112233
Q ss_pred EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEc
Q 048754 535 VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILN 574 (625)
Q Consensus 535 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~ 574 (625)
....++++++.|+.+ ..+.+|++. ....|..+.
T Consensus 263 ~~s~~g~~l~~~~~d------g~i~iw~~~-~~~~~~~~~ 295 (379)
T 3jrp_A 263 SWSLSGNVLALSGGD------NKVTLWKEN-LEGKWEPAG 295 (379)
T ss_dssp EECSSSCCEEEEESS------SSEEEEEEE-ETTEEEEEE
T ss_pred EEcCCCCEEEEecCC------CcEEEEeCC-CCCcccccc
Confidence 333466777777753 356666663 256777665
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=94.87 E-value=3.1 Score=40.44 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+ ..+.+||+.+ .+|..+..-....... .+++...++..++.|+.+ ..+.+||+.+.
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~--~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 84 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSG--NKWVQVHELKEHNGQV-TGVDWAPDSNRIVTCGTD-----RNAYVWTLKGR 84 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEET--TEEEEEEEEECCSSCE-EEEEEETTTTEEEEEETT-----SCEEEEEEETT
T ss_pred CCCEEEEEeCC------CEEEEEeCCC--CcEEeeeeecCCCCcc-cEEEEeCCCCEEEEEcCC-----CeEEEEECCCC
Confidence 44556666542 2388899877 4554432111111111 222223344566666643 25888898877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.+....... .....-.+.....++.+++.|+.+ ..+.+||+.+....+...... .+....-.++....++
T Consensus 85 --~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 85 --TWKPTLVIL-RINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNS 154 (372)
T ss_dssp --EEEEEEECC-CCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTS
T ss_pred --eeeeeEEee-cCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCC
Confidence 655432111 111111222222344566666532 246677765544222211110 1111111233333444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.|+.+ ..+.+||+.
T Consensus 155 ~~l~~~~~d---------g~i~~~d~~ 172 (372)
T 1k8k_C 155 VLLAAGSCD---------FKCRIFSAY 172 (372)
T ss_dssp SEEEEEETT---------SCEEEEECC
T ss_pred CEEEEEcCC---------CCEEEEEcc
Confidence 667776653 567788864
|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0048 Score=51.03 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=38.7
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
........++|.++.++++|+++++++|++ ++++|.++..++++++...
T Consensus 14 ~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~ 63 (129)
T 3mfx_A 14 QHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQAR 63 (129)
T ss_dssp TTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGG
T ss_pred hcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHH
Confidence 333444555688888889999999999999 8899999999998876443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=2.5 Score=39.34 Aligned_cols=157 Identities=15% Similarity=0.068 Sum_probs=83.7
Q ss_pred ceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCccccc
Q 048754 413 HSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRS 492 (625)
Q Consensus 413 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 492 (625)
|......++.+|+..|... .+.+..+|+.+.+.. ..++ .+....+.+.+..++ +||+..-. .
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~-~~i~---l~~~~fgeGi~~~g~-~lyv~t~~---------~ 85 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVE-NIHK---MDDSYFGEGLTLLNE-KLYQVVWL---------K 85 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEE-EEEE---CCTTCCEEEEEEETT-EEEEEETT---------C
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEE-EEEe---cCCCcceEEEEEeCC-EEEEEEec---------C
Confidence 3443333379999877322 257899998876521 2222 222334455656655 99998543 3
Q ss_pred CceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC-eE
Q 048754 493 GESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS-WR 571 (625)
Q Consensus 493 ~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~-W~ 571 (625)
+.+++||+.+ .+.+...+ .+.+ .+ ..+...++++|+.-| .+.++++|+ ++.+ -.
T Consensus 86 ~~v~viD~~t----~~v~~~i~----------~g~~-~g-~glt~Dg~~l~vs~g-------s~~l~viD~--~t~~v~~ 140 (266)
T 2iwa_A 86 NIGFIYDRRT----LSNIKNFT----------HQMK-DG-WGLATDGKILYGSDG-------TSILYEIDP--HTFKLIK 140 (266)
T ss_dssp SEEEEEETTT----TEEEEEEE----------CCSS-SC-CEEEECSSSEEEECS-------SSEEEEECT--TTCCEEE
T ss_pred CEEEEEECCC----CcEEEEEE----------CCCC-Ce-EEEEECCCEEEEECC-------CCeEEEEEC--CCCcEEE
Confidence 7899999873 33444431 0101 12 223343667887643 468999999 4544 33
Q ss_pred EEcCCCCCCCCC-CcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 572 ILNVPGQPPKFA-WGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 572 ~v~~~~~~p~~r-~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.. +..+.+. .-..+... ++.+|+-- +..++|.++|+.+.
T Consensus 141 ~I~V-g~~~~p~~~~nele~~-dg~lyvn~------~~~~~V~vID~~tg 182 (266)
T 2iwa_A 141 KHNV-KYNGHRVIRLNELEYI-NGEVWANI------WQTDCIARISAKDG 182 (266)
T ss_dssp EEEC-EETTEECCCEEEEEEE-TTEEEEEE------TTSSEEEEEETTTC
T ss_pred EEEE-CCCCcccccceeEEEE-CCEEEEec------CCCCeEEEEECCCC
Confidence 3332 2111111 11123333 45777542 12467888887664
|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.0058 Score=58.97 Aligned_cols=87 Identities=10% Similarity=0.104 Sum_probs=57.9
Q ss_pred EEEEEEEeeCCCCCEEEEEEEEE-eeecccccCCcch--hhhhhhhccc--------------------cccccccccCC
Q 048754 143 NRLRLAPIRDDDGTVTHIIGIQI-FSEAKIDLNHVSY--PVFKENCNQQ--------------------YDQSAQYFSGG 199 (625)
Q Consensus 143 ~~~~~~~~~d~~g~~~~~i~~~~-Dit~~~~~e~~~~--~~~~~~~~~~--------------------~~~~~~~~~~~ 199 (625)
+...+.|+++ +|++++++++.+ |+++++.....+. ......+... ......++|.+
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~dGIivvD~~ 189 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGDGFIRLDVD 189 (305)
Confidence 5788899987 689999999999 9998743322111 1111112221 12222344777
Q ss_pred CCCCccccccccccc---CchhHHHHhhhcccCc
Q 048754 200 HSPLSQHQDICGILQ---LSDEVLAHNILSRLTP 230 (625)
Q Consensus 200 ~~~~~~n~~~~~~~g---~~~e~~~~~~~~~~~~ 230 (625)
+.++++|++++++++ ++++++|.++..+++.
T Consensus 190 G~Ii~~N~aA~~ll~~lG~~~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 190 GVVSYASPNALSAYHRMGLTTELEGVNLIDATRP 223 (305)
Confidence 778899999999974 5678888888777654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.56 E-value=3.6 Score=39.77 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEE
Q 048754 420 GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTID 499 (625)
Q Consensus 420 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d 499 (625)
++..++.|+.+ ..+.+||+.+.......+.. .. ..-.++....++.+++.|+.+ ..+.+||
T Consensus 186 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~--~~v~~~~~~~~~~~l~~~~~d---------~~i~v~d 246 (369)
T 3zwl_B 186 KGKYIIAGHKD------GKISKYDVSNNYEYVDSIDL--HE--KSISDMQFSPDLTYFITSSRD---------TNSFLVD 246 (369)
T ss_dssp GGCEEEEEETT------SEEEEEETTTTTEEEEEEEC--CS--SCEEEEEECTTSSEEEEEETT---------SEEEEEE
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEeEEEEec--CC--CceeEEEECCCCCEEEEecCC---------ceEEEEE
Confidence 33455656532 36888998653222222221 11 111233333344566666542 5788899
Q ss_pred cCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC--------CCcEEEEeCCCCCCCe-
Q 048754 500 LGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS--------PSQLFLLDPSEEKPSW- 570 (625)
Q Consensus 500 ~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~--------~~~v~~~d~~~~~~~W- 570 (625)
+.+. + .+... ........+....++..+++|+....... ...+..||+. +..=
T Consensus 247 ~~~~--~--~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~ 308 (369)
T 3zwl_B 247 VSTL--Q--VLKKY------------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI--FEEEI 308 (369)
T ss_dssp TTTC--C--EEEEE------------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT--TCCEE
T ss_pred CCCC--c--eeeee------------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC--CCcch
Confidence 8732 2 22222 01111223333446666777665432111 1267788873 2221
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+. + ....-.++....++.+++.||.++
T Consensus 309 ~~~~--~---~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 309 GRVQ--G---HFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp EEEE--C---CSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhee--c---ccCcEEEEEECCCCCEEEEEcCCC
Confidence 1121 1 111112334445667888887654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=94.55 E-value=3.4 Score=39.56 Aligned_cols=258 Identities=9% Similarity=0.002 Sum_probs=116.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+... ..+++||+.+ .+...+... + ...-++++...++++|+.+.... .....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~--~~~~~~~~~--~-~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPET--KEIKRPFVS--H-KANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTT--CCEEEEEEC--S-SSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCC--CcEEEEeeC--C-CCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCC
Confidence 55688876532 2489999876 466554211 1 11122333334556877754221 11246899999887
Q ss_pred CCEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 395 QPTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 395 ~~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.... +... .+ ...-...+...++.+|+.............++.+|+++.. ...+... .. ...+.+...+
T Consensus 123 --~~~~~~~~~-~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~---~~~~i~~~~d 192 (333)
T 2dg1_A 123 --NLQDIIEDL-ST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQN-IS---VANGIALSTD 192 (333)
T ss_dssp --SCEEEECSS-SS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEE-ES---SEEEEEECTT
T ss_pred --EEEEEEccC-cc-CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecC-CC---cccceEECCC
Confidence 3332 2211 11 1111223333455677754321111123468888875544 4443211 11 1123333334
Q ss_pred c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 474 T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 474 ~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
+ .||+.... ...+++||+.++......+..... ...+........+.-.++++|+....
T Consensus 193 g~~l~v~~~~---------~~~i~~~d~~~~g~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 193 EKVLWVTETT---------ANRLHRIALEDDGVTIQPFGATIP-------YYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp SSEEEEEEGG---------GTEEEEEEECTTSSSEEEEEEEEE-------EECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred CCEEEEEeCC---------CCeEEEEEecCCCcCcccccceEE-------EecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3 57776432 267889998632223322211000 00011111122333346778887532
Q ss_pred CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCC--CcceEEEECC-cEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 553 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFA--WGHSTCVVGG-TRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r--~~~~~~~~~~-~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
...|.+||+ +...-..+..... ..+. .-.+++...+ +.||+.+. .+....-..++++++...
T Consensus 253 --~~~v~~~d~--~g~~~~~~~~~~~-~~g~~~~~~~~~~~~dg~~L~v~~~-~g~~~~~~~l~~~~~~~~ 317 (333)
T 2dg1_A 253 --QGRVLVFNK--RGYPIGQILIPGR-DEGHMLRSTHPQFIPGTNQLIICSN-DIEMGGGSMLYTVNGFAK 317 (333)
T ss_dssp --TTEEEEECT--TSCEEEEEECTTG-GGTCSCBCCEEEECTTSCEEEEEEE-CGGGTCCEEEEEEECSSC
T ss_pred --CCEEEEECC--CCCEEEEEEcCCC-ccccccCcceEEECCCCCEEEEEeC-ccCCCCCceEEEEecccC
Confidence 347899998 3333333322110 0000 1123333344 35665433 322112356788887644
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.49 E-value=3.7 Score=39.66 Aligned_cols=231 Identities=10% Similarity=0.004 Sum_probs=101.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+. +-...- .. ..... .+++...++..++.|+.+ ..+.+||+.+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~--~~~~~~-~~-h~~~v-~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNG--ERLGTL-DG-HTGTI-WSIDVDCFTKYCVTGSAD-----YSIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTC--CEEEEE-CC-CSSCE-EEEEECTTSSEEEEEETT-----TEEEEEETTTC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCc--hhhhhh-hh-cCCcE-EEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 445566665432 3888998763 222111 11 11111 122222334466666643 36889999877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC--ceEEcCCCCC-----CCCC-Ccc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP--MWREIPTSWS-----PPSR-LGH 466 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~--~W~~~~~~~~-----p~~r-~~~ 466 (625)
+.... +. . +.+ -.+.....++..++.++... ......+.+||+.+... .+........ .... .-.
T Consensus 107 ~~~~~-~~-~--~~~--v~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 107 QCVAT-WK-S--PVP--VKRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp CEEEE-EE-C--SSC--EEEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred cEEEE-ee-c--CCC--eEEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 32222 21 1 111 12222333444555554321 11224677777644322 1222111000 0000 112
Q ss_pred eEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEe
Q 048754 467 SLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFG 546 (625)
Q Consensus 467 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 546 (625)
+++...++.+++.|+.+ ..+.+||+.+. ...+.... .....-.++....++.+++.|
T Consensus 180 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~---~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD---------GKISKYDVSNN---YEYVDSID-----------LHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEEECGGGCEEEEEETT---------SEEEEEETTTT---TEEEEEEE-----------CCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCCEEEEEcCC---------CEEEEEECCCC---cEeEEEEe-----------cCCCceeEEEECCCCCEEEEe
Confidence 22233344566666543 57889998731 22232220 111111233333366677777
Q ss_pred cCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 547 GSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 547 G~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+. ...+.+||+ .+..-...-. ......++....++..+++|+.++
T Consensus 237 ~~------d~~i~v~d~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 237 SR------DTNSFLVDV--STLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp ET------TSEEEEEET--TTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC
T ss_pred cC------CceEEEEEC--CCCceeeeec-----CCCCceeEEecCCCceEEEeecCC
Confidence 64 347889998 3433322211 111123344445567777776554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=3.2 Score=38.81 Aligned_cols=230 Identities=7% Similarity=-0.050 Sum_probs=111.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+..... ..+++++... ++..+..+. ....-++++...++++|+.... .+.++++|+ ++
T Consensus 67 ~g~l~v~~~~~------~~i~~~~~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g 129 (299)
T 2z2n_A 67 DGEVWFTENAA------NKIGRITKKG---IIKEYTLPN--PDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DG 129 (299)
T ss_dssp TSCEEEEETTT------TEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TC
T ss_pred CCCEEEeCCCC------CeEEEECCCC---cEEEEeCCC--cCCCceeeEECCCCCEEEEecC-----CceEEEECC-CC
Confidence 56788765321 2388888753 455443111 1112233443345678887542 235889998 55
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++.+|+.... ...+++||+ +.. ...+... .....-.+++...++
T Consensus 130 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~--~~~~~~~--~~~~~~~~i~~~~~g 194 (299)
T 2z2n_A 130 --KIREYELP--NKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGD--ITEFKIP--TPASGPVGITKGNDD 194 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CEEEecCC--CCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCc--EEEeeCC--CCCCcceeEEECCCC
Confidence 34433211 01112233333335578875421 146888997 444 5543211 011111234444445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+|+.... ...+++||+. . +...+... ...........-.+++||+....
T Consensus 195 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~------ 244 (299)
T 2z2n_A 195 ALWFVEII---------GNKIGRITTS-G--EITEFKIP------------TPNARPHAITAGAGIDLWFTEWG------ 244 (299)
T ss_dssp SEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECSTTCEEEEETT------
T ss_pred CEEEEccC---------CceEEEECCC-C--cEEEEECC------------CCCCCceeEEECCCCCEEEeccC------
Confidence 78876432 2578889883 2 34333211 01111123333336678886422
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.+++||+ +........... ...-.+++. .++.||+... .+.+.+|++.+.
T Consensus 245 ~~~i~~~d~---~g~~~~~~~~~~---~~~~~~i~~-~~g~l~v~~~-------~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS---NNIIEEYPIQIK---SAEPHGICF-DGETIWFAME-------CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET---TTEEEEEECSSS---SCCEEEEEE-CSSCEEEEET-------TTEEEEEEEC--
T ss_pred CceEEEECC---CCceEEEeCCCC---CCccceEEe-cCCCEEEEec-------CCcEEEEEcCcc
Confidence 457999998 334444432111 111234444 6667777643 145777777654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=5.9 Score=41.78 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCC-Ccc---ceeEEEEcCCEEEEEccCCCCCccc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPP-GRW---GHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~-~r~---~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
.+.++.++.||+.+.. +.++++|..+-+..|+.-....... +.+ ..+.+ +.+++||+... ..
T Consensus 62 ~~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a-~~~~~v~~~t~------dg 127 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA-IYGDKVFFGTL------DA 127 (582)
T ss_dssp CCCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE-EETTEEEEEET------TT
T ss_pred eccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE-EECCEEEEEeC------CC
Confidence 4456789999998763 1289999987667898642111100 111 12223 34677877532 23
Q ss_pred cEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcC----C-EEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEG----S-KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.++.+|..|++..|+.-............+-++.++ . .+|+ |...........++.||+.+.+..|+.-
T Consensus 128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence 699999999988998543210000011112223322 1 4544 4321111123578999999988889753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.42 E-value=3.8 Score=39.49 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccCeeEEeeecCCCCCCCcccceEEE--CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE
Q 048754 289 EAVCWRKFTVRGAVEPSRCNFSACAA--GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL 366 (625)
Q Consensus 289 ~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 366 (625)
....|+.+.. |... ....+.. .+.+|+.|-. .-+++- .....+|+.+.... +.+........+
T Consensus 23 ~g~~W~~~~~----~~~~-~~~~v~~~~~~~~~~~G~~-------g~i~~s--~DgG~tW~~~~~~~-~~~~~~~~~i~~ 87 (327)
T 2xbg_A 23 DYNPWEAIQL----PTTA-TILDMSFIDRHHGWLVGVN-------ATLMET--RDGGQTWEPRTLVL-DHSDYRFNSVSF 87 (327)
T ss_dssp SSCCEEEEEC----SCSS-CEEEEEESSSSCEEEEETT-------TEEEEE--SSTTSSCEECCCCC-SCCCCEEEEEEE
T ss_pred CCCCceEeec----CCCC-cEEEEEECCCCcEEEEcCC-------CeEEEe--CCCCCCCeECCCCC-CCCCccEEEEEe
Confidence 3467988863 2212 2223333 4577886532 113332 22235899874322 112222222333
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC-CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA-PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.++.+|++|.. ..+++ ..+. -.+|+.+.... .|. .....+...++.+|+.|.. + .++.-+
T Consensus 88 ~~~~~~~~g~~------g~i~~-S~Dg-G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~---g----~v~~S~-- 148 (327)
T 2xbg_A 88 QGNEGWIVGEP------PIMLH-TTDG-GQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV---G----AIYRTK-- 148 (327)
T ss_dssp ETTEEEEEEET------TEEEE-ESST-TSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT---C----CEEEES--
T ss_pred cCCeEEEEECC------CeEEE-ECCC-CCCceECccccCCCC--CeEEEEEECCCCEEEEeCC---c----cEEEEc--
Confidence 45678887632 12443 2222 22899987431 121 1233444456688887641 1 234332
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
....+|+.+.. +.+..-++++...++.+|++|.. ..+++-+ +....+|+.+...
T Consensus 149 DgG~tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~~----------G~~~~S~-d~gG~tW~~~~~~------------ 202 (327)
T 2xbg_A 149 DSGKNWQALVQ---EAIGVMRNLNRSPSGEYVAVSSR----------GSFYSTW-EPGQTAWEPHNRT------------ 202 (327)
T ss_dssp STTSSEEEEEC---SCCCCEEEEEECTTSCEEEEETT----------SSEEEEE-CTTCSSCEEEECC------------
T ss_pred CCCCCCEEeec---CCCcceEEEEEcCCCcEEEEECC----------CcEEEEe-CCCCCceeECCCC------------
Confidence 33455999864 22223344544455567766532 3344432 1114689988532
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.+...+.+....++.+|+++.. ..+++.+.. .-.+|+.+... ..+.....+++...+++.+|+.|+
T Consensus 203 -~~~~~~~~~~~~~g~~~~~~~~-------G~~~~s~~D-~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 203 -TSRRLHNMGFTPDGRLWMIVNG-------GKIAFSDPD-NSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp -SSSCEEEEEECTTSCEEEEETT-------TEEEEEETT-EEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEES
T ss_pred -CCCccceeEECCCCCEEEEeCC-------ceEEEecCC-CCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeC
Confidence 2333344444457788877642 235554321 25689877531 112221123333334567888776
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.024 Score=53.51 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=45.1
Q ss_pred ccccCchhHHHHhhhcccCchhhh-hHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 211 GILQLSDEVLAHNILSRLTPRDVA-SIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 211 ~~~g~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
.+..+|+|++ ..|+.++++.++. +++.+||+|+.++.+..+|+..|...
T Consensus 50 ~~~~LP~ell-~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~ 99 (297)
T 2e31_A 50 YLAELPEPLL-LRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE 99 (297)
T ss_dssp CTTSSCHHHH-HHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred ChhhCCHHHH-HHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence 4568999999 9999999999999 99999999999999999999988765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=6.9 Score=42.23 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=91.5
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
...++++|+.++ ....+... ......-..+.+ .+++.++++..+.. .....++++|+.+.. .+..+.......
T Consensus 234 ~~~l~~~d~~~~--~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~-~~~~~~~~~~~~ 307 (706)
T 2z3z_A 234 HVTVGIYHLATG--KTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGR-FVRTLFVETDKH 307 (706)
T ss_dssp EEEEEEEETTTT--EEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCC-EEEEEEEEECSS
T ss_pred eeEEEEEECCCC--ceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCc-eeeEEEEccCCC
Confidence 357999999888 65555432 111111122233 33343344332221 133578889986651 244432110110
Q ss_pred CC-CcceEEEEC--CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe-
Q 048754 462 SR-LGHSLSVYG--RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM- 537 (625)
Q Consensus 462 ~r-~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~- 537 (625)
.. ...++.... ++++++.+..+ + ...+|.+|.. ......+... ... ....+.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~--g-----~~~l~~~~~~--~~~~~~l~~~------------~~~--v~~~~~~s 364 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRD--G-----WNHLYLYDTT--GRLIRQVTKG------------EWE--VTNFAGFD 364 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTT--S-----SCEEEEEETT--SCEEEECCCS------------SSC--EEEEEEEC
T ss_pred eECccCCceeecCCCCEEEEEEccC--C-----ccEEEEEECC--CCEEEecCCC------------CeE--EEeeeEEc
Confidence 00 012233443 55765555432 1 3678888865 3344444211 111 1121223
Q ss_pred cCC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEE
Q 048754 538 PCG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELC 616 (625)
Q Consensus 538 ~~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~ 616 (625)
.++ .|++.+... ......+|.+|+ .+.....+.. ....++.....+++.+++...+... ..++++++
T Consensus 365 pdg~~l~~~~~~~--~~~~~~l~~~d~--~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~~~--p~~i~l~d 432 (706)
T 2z3z_A 365 PKGTRLYFESTEA--SPLERHFYCIDI--KGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSPTV--PRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEESSS--CTTCBEEEEEET--TCCCCEESCC------SSSEEEEEECTTSSEEEEEEECSSC--SCEEEEEE
T ss_pred CCCCEEEEEecCC--CCceEEEEEEEc--CCCCceeccC------CCceEEEEECCCCCEEEEEecCCCC--CcEEEEEE
Confidence 244 455554331 112358999998 4555555531 1112444555566666666544432 35677777
Q ss_pred ccC
Q 048754 617 LAS 619 (625)
Q Consensus 617 ~~~ 619 (625)
+.+
T Consensus 433 ~~~ 435 (706)
T 2z3z_A 433 IGK 435 (706)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=53.21 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=44.4
Q ss_pred cccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhc
Q 048754 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNA 260 (625)
Q Consensus 212 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (625)
+..+|.|++ ..|+.+++|.|+..++.+||+|+.++.++.+||..+.++
T Consensus 5 l~~LP~ei~-l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQ-LYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHH-HHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 557899998 999999999999999999999999999999999988854
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.02 E-value=4.5 Score=38.79 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=36.7
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
.++.+|+.++.. +.++++|+.+ .+.. .+... ....-+..+.. +++.+|+.+... +.+++||+
T Consensus 9 ~~~~~~v~~~~~------~~v~~~d~~~--~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~ 72 (349)
T 1jmx_B 9 AGHEYMIVTNYP------NNLHVVDVAS--DTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDL 72 (349)
T ss_dssp TTCEEEEEEETT------TEEEEEETTT--TEEEEEEECS---SCCSSCEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred CCCEEEEEeCCC------CeEEEEECCC--CcEEEEEecC---CCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeC
Confidence 366788877652 3489999876 3333 22211 10011233333 345678776432 46999999
Q ss_pred CCC
Q 048754 392 DAK 394 (625)
Q Consensus 392 ~t~ 394 (625)
.++
T Consensus 73 ~t~ 75 (349)
T 1jmx_B 73 DTC 75 (349)
T ss_dssp TTT
T ss_pred CCC
Confidence 887
|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.013 Score=54.93 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=37.9
Q ss_pred hhccccccc---cccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 184 NCNQQYDQS---AQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 184 ~~~~~~~~~---~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
.++..++.. ..++|. +..++++|+++++++||+ ++++|..+..++++++...+
T Consensus 64 ~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~ 123 (258)
T 3p7n_A 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123 (258)
T ss_dssp HHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHH
T ss_pred HHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhH
Confidence 344444433 334477 666789999999999999 88998888778777654433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=7.3 Score=40.66 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=108.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC-
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL- 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~- 391 (625)
++.+|+.+..+ +.+.++|..+. +-. .+. .+. .-|.++.. +++++|+.+. + +.+.+||+
T Consensus 148 ~~~~~vs~~~d------~~V~v~D~~t~--~~~~~i~-~g~----~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~ 208 (543)
T 1nir_A 148 PNLFSVTLRDA------GQIALVDGDSK--KIVKVID-TGY----AVHISRMSASGRYLLVIGR-D-----ARIDMIDLW 208 (543)
T ss_dssp GGEEEEEEGGG------TEEEEEETTTC--CEEEEEE-CST----TEEEEEECTTSCEEEEEET-T-----SEEEEEETT
T ss_pred CCEEEEEEcCC------CeEEEEECCCc--eEEEEEe-cCc----ccceEEECCCCCEEEEECC-C-----CeEEEEECc
Confidence 56788877643 23888888763 322 221 111 13444333 4556777654 1 57999999
Q ss_pred -CCCCCEEE-EcCCCCCCCCCccceEEEE----cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC------
Q 048754 392 -DAKQPTWI-EVSGGAPPLPRSWHSSCII----EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS------ 459 (625)
Q Consensus 392 -~t~~~~W~-~~~~~~~p~~r~~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~------ 459 (625)
.+. +-. .++.+ ..++ +.+..- +++.+|+.. . ..+.+.++|..+.+. -..++..+.
T Consensus 209 ~~t~--~~~~~i~~g--~~p~--~va~sp~~~~dg~~l~v~~-~-----~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 209 AKEP--TKVAEIKIG--IEAR--SVESSKFKGYEDRYTIAGA-Y-----WPPQFAIMDGETLEP-KQIVSTRGMTVDTQT 275 (543)
T ss_dssp SSSC--EEEEEEECC--SEEE--EEEECCSTTCTTTEEEEEE-E-----ESSEEEEEETTTCCE-EEEEECCEECSSSCC
T ss_pred CCCC--cEEEEEecC--CCcc--eEEeCCCcCCCCCEEEEEE-c-----cCCeEEEEecccccc-ceeecccCcccCccc
Confidence 665 332 33322 1121 222222 455666643 2 124677888765431 122222111
Q ss_pred --CCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 460 --PPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 460 --p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
|.++.. +++.. ++..+|+.... ...++++|..+. +-..+... +..+.-+....
T Consensus 276 ~~~~~~v~-~i~~s~~~~~~~vs~~~---------~g~i~vvd~~~~--~~l~~~~i------------~~~~~~~~~~~ 331 (543)
T 1nir_A 276 YHPEPRVA-AIIASHEHPEFIVNVKE---------TGKVLLVNYKDI--DNLTVTSI------------GAAPFLHDGGW 331 (543)
T ss_dssp EESCCCEE-EEEECSSSSEEEEEETT---------TTEEEEEECTTS--SSCEEEEE------------ECCSSCCCEEE
T ss_pred cccCCceE-EEEECCCCCEEEEEECC---------CCeEEEEEecCC--CcceeEEe------------ccCcCccCceE
Confidence 122221 22222 23356655432 378899998742 21122222 11222233333
Q ss_pred ecCCE-EEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC-cEEEEEcCcCCCCCccCceEE
Q 048754 537 MPCGR-IIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG-TRVLVLGGHTGEEWVLNELHE 614 (625)
Q Consensus 537 ~~~~~-l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~~i~i~GG~~~~~~~~~d~~~ 614 (625)
..+++ +|+.+.. .+.|.++|+ .+.+-......+..|.+-.+. .+...+ +.+|+.+.... +.|-+
T Consensus 332 spdg~~l~va~~~------~~~v~v~D~--~tg~l~~~i~~g~~ph~g~g~-~~~~p~~g~~~~s~~~~d-----~~V~v 397 (543)
T 1nir_A 332 DSSHRYFMTAANN------SNKVAVIDS--KDRRLSALVDVGKTPHPGRGA-NFVHPKYGPVWSTSHLGD-----GSISL 397 (543)
T ss_dssp CTTSCEEEEEEGG------GTEEEEEET--TTTEEEEEEECSSSBCCTTCE-EEEETTTEEEEEEEBSSS-----SEEEE
T ss_pred CCCCCEEEEEecC------CCeEEEEEC--CCCeEEEeeccCCCCCCCCCc-ccCCCCCccEEEeccCCC-----ceEEE
Confidence 34555 5554332 457888998 444433322223444432222 223333 56666553221 33555
Q ss_pred EEccC
Q 048754 615 LCLAS 619 (625)
Q Consensus 615 ~~~~~ 619 (625)
+++++
T Consensus 398 ~d~~~ 402 (543)
T 1nir_A 398 IGTDP 402 (543)
T ss_dssp EECCT
T ss_pred EEeCC
Confidence 55554
|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.02 Score=46.05 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=32.3
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
++|.+..++++|+++++++||+ +|++|.++..++++++..
T Consensus 8 ~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~ 48 (119)
T 2vv6_A 8 VIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRS 48 (119)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHH
T ss_pred EECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHH
Confidence 3466777779999999999999 889988888777765543
|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.014 Score=46.95 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=34.9
Q ss_pred ccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
++.+..++|+|+++++++||+ +|++|..+..+++|++...+
T Consensus 19 ~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~ 60 (121)
T 2kdk_A 19 FAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNL 60 (121)
T ss_dssp ECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHH
T ss_pred ECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHH
Confidence 366777779999999999999 88898888899999887655
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=93.76 E-value=4.8 Score=40.30 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+.++...+...+......++++|.... .-..+... . ... .+.....+++.+++++.... ...++++|+.+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~--~-~~v-~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRS--P-QPL-MSPAWSPDGSKLAYVTFESG---RSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEE--S-SCE-EEEEECTTSSEEEEEECTTS---SCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCC--C-Ccc-eeeEEcCCCCEEEEEEecCC---CcEEEEEECCCC
Confidence 445544443322223367999998765 33333321 1 111 12222233445555553322 247899998766
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
. ...+.. .+ ....+.....++ .|++.+..+. ...++++|+.+ .+...+...
T Consensus 214 ~--~~~l~~--~~--~~~~~~~~spdg~~la~~~~~~g-------~~~i~~~d~~~--~~~~~l~~~------------- 265 (415)
T 2hqs_A 214 A--VRQVAS--FP--RHNGAPAFSPDGSKLAFALSKTG-------SLNLYVMDLAS--GQIRQVTDG------------- 265 (415)
T ss_dssp C--EEEEEC--CS--SCEEEEEECTTSSEEEEEECTTS-------SCEEEEEETTT--CCEEECCCC-------------
T ss_pred c--EEEeec--CC--CcccCEEEcCCCCEEEEEEecCC-------CceEEEEECCC--CCEEeCcCC-------------
Confidence 5 555442 11 112233333343 4554544321 25799999984 344443321
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
...........+++.+++++... ....+|.+|+ .+..-..+.. ......+....++++.+++++....
T Consensus 266 -~~~~~~~~~spdg~~l~~~s~~~---g~~~i~~~d~--~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g- 333 (415)
T 2hqs_A 266 -RSNNTEPTWFPDSQNLAFTSDQA---GRPQVYKVNI--NGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG- 333 (415)
T ss_dssp -SSCEEEEEECTTSSEEEEEECTT---SSCEEEEEET--TSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred -CCcccceEECCCCCEEEEEECCC---CCcEEEEEEC--CCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC-
Confidence 11111222233566555554321 1358999998 4544444321 1112223344456666666664432
Q ss_pred CccCceEEEEccC
Q 048754 607 WVLNELHELCLAS 619 (625)
Q Consensus 607 ~~~~d~~~~~~~~ 619 (625)
...++++++.+
T Consensus 334 --~~~i~~~d~~~ 344 (415)
T 2hqs_A 334 --QQHIAKQDLAT 344 (415)
T ss_dssp --CEEEEEEETTT
T ss_pred --ceEEEEEECCC
Confidence 25677777754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.72 E-value=5.9 Score=39.19 Aligned_cols=224 Identities=9% Similarity=0.046 Sum_probs=103.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+. ..-..+ . .....-.+..++++ +++.|+.+ ..+.++|+.+.
T Consensus 145 ~~~~l~~~~~dg------~i~iwd~~~~-~~~~~~--~---~~~~~v~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~ 206 (401)
T 4aez_A 145 DGSFLSVGLGNG------LVDIYDVESQ-TKLRTM--A---GHQARVGCLSWNRH-VLSSGSRS-----GAIHHHDVRIA 206 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTTC-CEEEEE--C---CCSSCEEEEEEETT-EEEEEETT-----SEEEEEETTSS
T ss_pred CCCEEEEECCCC------eEEEEECcCC-eEEEEe--c---CCCCceEEEEECCC-EEEEEcCC-----CCEEEEecccC
Confidence 445566665432 3889998763 122222 1 11112233334454 66666644 36888998744
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-C
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-R 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 473 (625)
...-..+... . . .-.+.....++.+++.|+.+ ..+.+||+.+....... .. ...+ -.++.... +
T Consensus 207 ~~~~~~~~~~--~-~-~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~-~~--~~~~--v~~~~~~p~~ 271 (401)
T 4aez_A 207 NHQIGTLQGH--S-S-EVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTK-TN--HNAA--VKAVAWCPWQ 271 (401)
T ss_dssp SCEEEEEECC--S-S-CEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEE-CC--CSSC--CCEEEECTTS
T ss_pred cceeeEEcCC--C-C-CeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEe-cC--Ccce--EEEEEECCCC
Confidence 2223333221 1 1 11122222344566767643 36888998664422222 11 1111 12333333 3
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEe-cCC-EEEEEecCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM-PCG-RIIIFGGSIAG 551 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~-~l~v~GG~~~~ 551 (625)
..+++.||... ...+.+||+.+. + .+.... ... ...++.+ .++ .+++.+|..
T Consensus 272 ~~ll~~~~gs~-------d~~i~i~d~~~~--~--~~~~~~------------~~~-~v~~~~~s~~~~~l~~~~g~~-- 325 (401)
T 4aez_A 272 SNLLATGGGTM-------DKQIHFWNAATG--A--RVNTVD------------AGS-QVTSLIWSPHSKEIMSTHGFP-- 325 (401)
T ss_dssp TTEEEEECCTT-------TCEEEEEETTTC--C--EEEEEE------------CSS-CEEEEEECSSSSEEEEEECTT--
T ss_pred CCEEEEecCCC-------CCEEEEEECCCC--C--EEEEEe------------CCC-cEEEEEECCCCCeEEEEeecC--
Confidence 36777764211 257888998742 2 222220 011 1222232 244 444444542
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+.....+... ..... .-.++....++.+++.||.++
T Consensus 326 ---dg~i~v~~~--~~~~~~~~~~~-~~h~~-~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 326 ---DNNLSIWSY--SSSGLTKQVDI-PAHDT-RVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp ---TCEEEEEEE--ETTEEEEEEEE-ECCSS-CCCEEEECTTSSEEEEECTTS
T ss_pred ---CCcEEEEec--CCccceeEEEe-cCCCC-CEEEEEECCCCCEEEEEeCCC
Confidence 457888888 45445444210 00111 123444555677888887654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=93.61 E-value=5.4 Score=38.42 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.+|++.+..........-....... .++....++. ++.|+.+ ..+.++|+.++
T Consensus 108 ~~~~l~s~~~d~------~v~iw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~ 174 (340)
T 1got_B 108 SGNYVACGGLDN------ICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQ-IVTSSGD-----TTCALWDIETG 174 (340)
T ss_dssp TSSEEEEEETTC------EEEEEETTTCSBSCEEEEEEECCSSCE-EEEEEEETTE-EEEEETT-----SCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEECccCCCcceeEEEecCCCccE-EEEEECCCCc-EEEEECC-----CcEEEEECCCC
Confidence 445666666532 377888765322222111000111111 1222234555 4455533 35888999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
.....-.. ... .-.+.+...++.+++.|+.+ ..+.++|+.+... -..+.. ...+ -.+++...++
T Consensus 175 --~~~~~~~~--h~~-~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~-~~~~~~--h~~~--v~~v~~~p~~ 238 (340)
T 1got_B 175 --QQTTTFTG--HTG-DVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMC-RQTFTG--HESD--INAICFFPNG 238 (340)
T ss_dssp --EEEEEECC--CSS-CEEEEEECTTSSEEEEEETT------SCEEEEETTTCSE-EEEECC--CSSC--EEEEEECTTS
T ss_pred --cEEEEEcC--CCC-ceEEEEECCCCCEEEEEeCC------CcEEEEECCCCee-EEEEcC--CcCC--EEEEEEcCCC
Confidence 43322111 111 11223233445677777643 3578888755431 111211 1111 1233333445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE-EecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV-SMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+... . .+.... .+.......++ ...++++++.|+.
T Consensus 239 ~~l~s~s~d---------~~v~iwd~~~~--~--~~~~~~----------~~~~~~~v~~~~~s~~g~~l~~g~~----- 290 (340)
T 1got_B 239 NAFATGSDD---------ATCRLFDLRAD--Q--ELMTYS----------HDNIICGITSVSFSKSGRLLLAGYD----- 290 (340)
T ss_dssp SEEEEEETT---------SCEEEEETTTT--E--EEEEEC----------CTTCCSCEEEEEECTTSSEEEEEET-----
T ss_pred CEEEEEcCC---------CcEEEEECCCC--c--EEEEEc----------cCCcccceEEEEECCCCCEEEEECC-----
Confidence 677777753 56788998732 2 222220 01111122233 3346778888775
Q ss_pred CCCcEEEEeCCCCCCCe-EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCC
Q 048754 554 SPSQLFLLDPSEEKPSW-RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W-~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
...+.+||+. +..= ..+. + ....-.++...+++..++.||.++.
T Consensus 291 -d~~i~vwd~~--~~~~~~~~~--~---h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 291 -DFNCNVWDAL--KADRAGVLA--G---HDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp -TSEEEEEETT--TCCEEEEEE--C---CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred -CCeEEEEEcc--cCcEeeEee--c---CCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 3478889983 2221 1111 1 1111123344456678888887653
|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.015 Score=46.33 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=32.6
Q ss_pred ccccCC-CCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 194 QYFSGG-HSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 194 ~~~~~~-~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.++|.+ ..++++|+++++++||+ +|++|.++..++++++
T Consensus 12 ~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~ 52 (114)
T 1ll8_A 12 FTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSD 52 (114)
T ss_dssp EEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTT
T ss_pred EEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcch
Confidence 344766 77779999999999999 8899989988888754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.56 E-value=3.2 Score=40.31 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=83.2
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.+++.++.|+.++ .+.++|+.++ +-...-.. ............++..+++.|+.+ ..+.++|+.+
T Consensus 137 pdg~~l~sgs~d~-----~i~iwd~~~~--~~~~~~~~--h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~ 201 (344)
T 4gqb_B 137 SSGTQAVSGSKDI-----CIKVWDLAQQ--VVLSSYRA--HAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRC 201 (344)
T ss_dssp TTSSEEEEEETTS-----CEEEEETTTT--EEEEEECC--CSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTS
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCC--cEEEEEcC--cCCceEEEEecCCCCCceeeeccc------cccccccccc
Confidence 3445667776543 5888999887 43322111 111111111112344577767643 2577889765
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
... -..+.. ........++.+ .++.+++.|+.+ ..+.+||+.+. +.+..+
T Consensus 202 ~~~-~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d---------g~v~~wd~~~~----~~~~~~----------- 253 (344)
T 4gqb_B 202 PKP-ASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN---------GTVSLVDTKST----SCVLSS----------- 253 (344)
T ss_dssp SSC-EEECC-------CCCEEEEEECSSCTTEEEEEETT---------SEEEEEESCC------CCEEE-----------
T ss_pred cce-eeeeec---ceeeccceeeeecCCCCcceEEeccC---------CcEEEEECCCC----cEEEEE-----------
Confidence 431 222221 111111122232 234677777653 56788898742 122222
Q ss_pred CCCCccceEEEEec-CC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECC-cEEEEEcC
Q 048754 525 VPPPRLDHVAVSMP-CG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGG-TRVLVLGG 601 (625)
Q Consensus 525 ~p~~r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~-~~i~i~GG 601 (625)
......-.++.+. ++ ++++.|+.+ ..|.+||+ .+.+-... .+ ....-.++...++ ..+++-||
T Consensus 254 -~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~--~~~~~~~~--~~---H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 254 -AVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDS--SLSELFRS--QA---HRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp -ECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECT--TCCEEEEE--CC---CSSCEEEEEECSSSTTEEEEEE
T ss_pred -cCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEEC--CCCcEEEE--cC---CCCCEEEEEEeCCCCeEEEEEc
Confidence 0111112333332 33 566667653 36888898 44432222 11 1111122333333 45777888
Q ss_pred cCCC
Q 048754 602 HTGE 605 (625)
Q Consensus 602 ~~~~ 605 (625)
.++.
T Consensus 320 ~D~~ 323 (344)
T 4gqb_B 320 WDHQ 323 (344)
T ss_dssp TTSC
T ss_pred CCCe
Confidence 7654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.30 E-value=2.5 Score=41.05 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++.+++.||.++ .+.++|..++ .|.............-.+.+...++.+++.|+.+ ..+.++|+.+
T Consensus 26 p~g~~las~~~D~-----~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~ 92 (345)
T 3fm0_A 26 PAGTLLASCGGDR-----RIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQ 92 (345)
T ss_dssp TTSSCEEEEETTS-----CEEEEEEETT--EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECC
T ss_pred CCCCEEEEEcCCC-----eEEEEEcCCC--cceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccC
Confidence 3445677777543 4778888777 6653211000111111122222344566667643 2455666545
Q ss_pred CCCceEEcCC-CCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 447 DKPMWREIPT-SWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 447 ~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
.. +..+.. .+...+ -.++....++.+++.|+.+ ..+.++|+.. ...+..+...
T Consensus 93 ~~--~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~s~D---------~~v~iwd~~~-~~~~~~~~~~------------ 146 (345)
T 3fm0_A 93 DD--FECVTTLEGHENE--VKSVAWAPSGNLLATCSRD---------KSVWVWEVDE-EDEYECVSVL------------ 146 (345)
T ss_dssp C---EEEEEEECCCSSC--EEEEEECTTSSEEEEEETT---------SCEEEEEECT-TSCEEEEEEE------------
T ss_pred CC--eEEEEEccCCCCC--ceEEEEeCCCCEEEEEECC---------CeEEEEECCC-CCCeEEEEEe------------
Confidence 44 433221 111111 1233333445677777754 5677888764 2344444333
Q ss_pred CCCccceEEE-EecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 526 PPPRLDHVAV-SMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 526 p~~r~~~~~~-~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
........++ ...++.+++.|+.+ ..+.+||+ .+..|..+.... .....-.++...+++..++.|+.++
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~~w~~--~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLASASYD------DTVKLYRE--EEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEEEEETT------SCEEEEEE--ETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCcCCCeEEEEECCCCCEEEEEeCC------CcEEEEEe--cCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCC
Confidence 1111112222 33356777777753 36777887 466675443111 0111112333334556667776554
|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.028 Score=45.24 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=31.8
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
..++|.+..++|+|+++++++||+ +|++|..+..+.++++
T Consensus 18 i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~ 58 (120)
T 2gj3_A 18 ISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTT 58 (120)
T ss_dssp EEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTS
T ss_pred EEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCC
Confidence 334477777889999999999999 8899887777666544
|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.023 Score=48.27 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=36.5
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
........++|.+..++++|+++++++|++ ++++|.++.+++|.
T Consensus 29 ~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~ 73 (152)
T 3mxq_A 29 DQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE 73 (152)
T ss_dssp HHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG
T ss_pred hcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC
Confidence 333445556688888899999999999999 89999999988876
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.06 E-value=4.3 Score=40.85 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=51.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+++.|+.+. .+.++|+.+.. .-..+...+ ..... .+++.. .++..++.|+.++ .+.++|+.++
T Consensus 132 ~~~lasGs~dg------~i~lWd~~~~~-~~~~~~~~g-H~~~V-~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~ 197 (435)
T 4e54_B 132 PSTVAVGSKGG------DIMLWNFGIKD-KPTFIKGIG-AGGSI-TGLKFNPLNTNQFYASSMEG-----TTRLQDFKGN 197 (435)
T ss_dssp TTCEEEEETTS------CEEEECSSCCS-CCEEECCCS-SSCCC-CEEEECSSCTTEEEEECSSS-----CEEEEETTSC
T ss_pred CCEEEEEeCCC------EEEEEECCCCC-ceeEEEccC-CCCCE-EEEEEeCCCCCEEEEEeCCC-----EEEEeeccCC
Confidence 44666676533 28888887631 111111111 11111 122221 2334666666543 4788898877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
....+.... .......+.....++.+++.|+.+ ..+.++|+..
T Consensus 198 --~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~ 240 (435)
T 4e54_B 198 --ILRVFASSD-TINIWFCSLDVSASSRMVVTGDNV------GNVILLNMDG 240 (435)
T ss_dssp --EEEEEECCS-SCSCCCCCEEEETTTTEEEEECSS------SBEEEEESSS
T ss_pred --ceeEEeccC-CCCccEEEEEECCCCCEEEEEeCC------CcEeeeccCc
Confidence 554443221 111111233334455677777643 3578888744
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=93.05 E-value=5.3 Score=36.67 Aligned_cols=231 Identities=9% Similarity=-0.032 Sum_probs=108.1
Q ss_pred CCEEEE-EcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVL-FGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv-~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.||+ .... .+.+++++..+ .....+..... ..-++++...++.+|+... . +.+++||+.+
T Consensus 34 ~g~l~v~~~~~------~~~i~~~~~~~--~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~ 96 (270)
T 1rwi_B 34 AGNVYVTSEGM------YGRVVKLATGS--TGTTVLPFNGL---YQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGS 96 (270)
T ss_dssp TCCEEEEECSS------SCEEEEECC-------EECCCCSC---CSCCCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred CCCEEEEccCC------CCcEEEecCCC--cccceEeeCCc---CCcceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence 457888 5332 12378888765 23332211111 1113344433456888765 2 3689999877
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
. ....+... ....-+..+...++.+|+.... ...+++|+..+.. .......... .-.++++..+
T Consensus 97 ~--~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~--~~~~~~~~~~---~p~~i~~~~~ 160 (270)
T 1rwi_B 97 N--NQTVLPFD---GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKT--QTVLPFTGLN---DPDGVAVDNS 160 (270)
T ss_dssp S--CCEECCCC---SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCS--CEECCCCSCC---SCCCEEECTT
T ss_pred c--eEeeeecC---CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCce--eEeeccccCC---CceeEEEeCC
Confidence 6 33333221 1111123333335578886432 2367888754432 3332211111 1234445445
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
+++|+.... ...+.+||+.. ..-...... . .......+.-.++.||+....
T Consensus 161 g~l~v~~~~---------~~~i~~~~~~~--~~~~~~~~~------------~-~~~p~~i~~d~~g~l~v~~~~----- 211 (270)
T 1rwi_B 161 GNVYVTDTD---------NNRVVKLEAES--NNQVVLPFT------------D-ITAPWGIAVDEAGTVYVTEHN----- 211 (270)
T ss_dssp CCEEEEEGG---------GTEEEEECTTT--CCEEECCCS------------S-CCSEEEEEECTTCCEEEEETT-----
T ss_pred CCEEEEECC---------CCEEEEEecCC--CceEeeccc------------C-CCCceEEEECCCCCEEEEECC-----
Confidence 578887442 25788898873 222111110 1 111123333335688887542
Q ss_pred CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
.+.|++|++. ...-..... . ....-.++++..++.||+.... -+.|.+|++..+
T Consensus 212 -~~~v~~~~~~--~~~~~~~~~-~---~~~~p~~i~~~~~g~l~v~~~~------~~~v~~~~~~~~ 265 (270)
T 1rwi_B 212 -TNQVVKLLAG--STTSTVLPF-T---GLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSLEH 265 (270)
T ss_dssp -TSCEEEECTT--CSCCEECCC-C---SCSCEEEEEECTTCCEEEEEGG------GTEEEEECCCGG
T ss_pred -CCcEEEEcCC--CCcceeecc-C---CCCCceeEEECCCCCEEEEECC------CCEEEEEcCCCc
Confidence 3579999983 322222211 1 1111233444455677776542 245777777554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=92.93 E-value=7.1 Score=37.80 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+..||+.+.... ....+.+|++...+.+.+.+.......... ...+ ++++.+|+.+..+ ..+.+|++.+.
T Consensus 61 g~~l~~~~~~~~---~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p-~~~~-~dg~~l~~~~~~~-----~~v~~~~~~~~ 130 (361)
T 3scy_A 61 GKFVYSVNEFSK---DQAAVSAFAFDKEKGTLHLLNTQKTMGADP-CYLT-TNGKNIVTANYSG-----GSITVFPIGQD 130 (361)
T ss_dssp SSEEEEEECCSS---TTCEEEEEEEETTTTEEEEEEEEECSSSCE-EEEE-ECSSEEEEEETTT-----TEEEEEEBCTT
T ss_pred CCEEEEEEccCC---CCCcEEEEEEeCCCCcEEEeeEeccCCCCc-EEEE-ECCCEEEEEECCC-----CEEEEEEeCCC
Confidence 445777665311 123366666654334565553111111111 2222 2677777765322 35788887643
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=7.4 Score=37.68 Aligned_cols=214 Identities=15% Similarity=0.171 Sum_probs=105.5
Q ss_pred EEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEec----CCCCCce-EEcCCCCCC
Q 048754 386 VFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDL----TTDKPMW-REIPTSWSP 460 (625)
Q Consensus 386 ~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~----~~~~~~W-~~~~~~~~p 460 (625)
-|.+-..-....|+...-+..|..-.-|+.|.++++ -|++|= ..+......+-.+-. .+....- ..++.. ..
T Consensus 260 ~W~~~T~F~~spW~~t~L~~i~~vTe~HSFa~i~~~-~fa~Gy-HnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se-y~ 336 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNN-GFAMGY-HQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE-YE 336 (670)
T ss_dssp EEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSS-CEEEEE-EECSSSSCEEEEEEETTTTTCTTCCEEEECCGG-GC
T ss_pred eeeeeeeeccCCceecccccccceeeeeeeeEecCC-ceEEEe-ccCCCCcceeeEEEecccccCCcceeeeechhh-hc
Confidence 566654333336876554445667778999999665 456653 222222233333221 1111111 222221 11
Q ss_pred CCCCcceEEEECCcEEEEEc-CCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 461 PSRLGHSLSVYGRTKVLMFG-GLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
..-...|.-.+++ .||+.- |...... -..+.+-+.. ...|..+.... ........ +...+
T Consensus 337 ~~AsEPCvkyYdg-vLyLtTRgt~~~~~----GS~L~rs~d~--Gq~w~slrfp~-----------nvHhtnlP-Fakvg 397 (670)
T 3ju4_A 337 PDASEPCIKYYDG-VLYLITRGTRGDRL----GSSLHRSRDI--GQTWESLRFPH-----------NVHHTTLP-FAKVG 397 (670)
T ss_dssp TTEEEEEEEEETT-EEEEEEEESCTTSC----CCEEEEESST--TSSCEEEECTT-----------CCCSSCCC-EEEET
T ss_pred cccccchhhhhCC-EEEEEecCcCCCCC----cceeeeeccc--CCchhheeccc-----------cccccCCC-cceeC
Confidence 1111123333444 999875 3333222 2455555555 56899886431 11111112 33338
Q ss_pred CEEEEEecCCCC---------CC---CCCcEEE--EeCC---CCCCCeEEEcC---CCCCCCCCCcceEEEECCcEEE-E
Q 048754 540 GRIIIFGGSIAG---------LH---SPSQLFL--LDPS---EEKPSWRILNV---PGQPPKFAWGHSTCVVGGTRVL-V 598 (625)
Q Consensus 540 ~~l~v~GG~~~~---------~~---~~~~v~~--~d~~---~~~~~W~~v~~---~~~~p~~r~~~~~~~~~~~~i~-i 598 (625)
+.|||||-.... .. ..+..+. .++. -++-+|..+.. .|..-..-.+-+.+++.|+.|| |
T Consensus 398 D~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyi 477 (670)
T 3ju4_A 398 DDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYM 477 (670)
T ss_dssp TEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEE
T ss_pred CEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEE
Confidence 999999864311 11 1334443 3331 13557777652 2333334456667777777776 7
Q ss_pred EcCcCCCC-------C---------ccCceEEEEccCCC
Q 048754 599 LGGHTGEE-------W---------VLNELHELCLASKQ 621 (625)
Q Consensus 599 ~GG~~~~~-------~---------~~~d~~~~~~~~~~ 621 (625)
|||.+-.+ . --.|+|.|.+.-.+
T Consensus 478 FGgEd~~np~s~gdN~~k~~~~~~Ghp~dlY~~ri~i~~ 516 (670)
T 3ju4_A 478 FGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGP 516 (670)
T ss_dssp EEEBCSCCCCTTTTTTTCCTTSTTCCCCEEEEEEEECSC
T ss_pred ecCcccCCccccccccccCccccCCCCcceEEEEEEecC
Confidence 99976321 1 24678888775443
|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.036 Score=44.57 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=31.8
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
..++|.+..++++|+++++++|++ ++++|.++.++++++
T Consensus 32 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~ 71 (125)
T 3fc7_A 32 IVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSE 71 (125)
T ss_dssp EEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHH
T ss_pred EEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHH
Confidence 334577777889999999999999 888988888888443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.70 E-value=7.2 Score=37.25 Aligned_cols=179 Identities=12% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+..+++.|+.++ .+.++|+.+. +-. .+... +.. . .+.+...++..++.|+.+ ..+.+||+.+
T Consensus 91 ~~~~l~s~s~D~-----~i~lWd~~~~--~~~~~~~~~--~~~-~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~ 153 (321)
T 3ow8_A 91 TLPIAASSSLDA-----HIRLWDLENG--KQIKSIDAG--PVD-A-WTLAFSPDSQYLATGTHV------GKVNIFGVES 153 (321)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTT--EEEEEEECC--TTC-C-CCEEECTTSSEEEEECTT------SEEEEEETTT
T ss_pred CCCEEEEEeCCC-----cEEEEECCCC--CEEEEEeCC--Ccc-E-EEEEECCCCCEEEEEcCC------CcEEEEEcCC
Confidence 334666666443 5888998877 433 23221 111 1 123333445666767632 3678888766
Q ss_pred CCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCC
Q 048754 447 DKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
....+..... ...-.+++...++++++.|+.+ ..+.+||+.+. ..+.... ..
T Consensus 154 ~~~~~~~~~~-----~~~v~~~~~spdg~~lasg~~d---------g~i~iwd~~~~----~~~~~~~----------~h 205 (321)
T 3ow8_A 154 GKKEYSLDTR-----GKFILSIAYSPDGKYLASGAID---------GIINIFDIATG----KLLHTLE----------GH 205 (321)
T ss_dssp CSEEEEEECS-----SSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTT----EEEEEEC----------CC
T ss_pred CceeEEecCC-----CceEEEEEECCCCCEEEEEcCC---------CeEEEEECCCC----cEEEEEc----------cc
Confidence 5433322111 1112233344455677777653 56888998732 2232220 00
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.. .-.++....++++++.|+.+ ..+.+||+ .+......-. + ....-.++...+++..++.||.++
T Consensus 206 ~~-~v~~l~~spd~~~l~s~s~d------g~i~iwd~--~~~~~~~~~~-~---h~~~v~~~~~sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 206 AM-PIRSLTFSPDSQLLVTASDD------GYIKIYDV--QHANLAGTLS-G---HASWVLNVAFCPDDTHFVSSSSDK 270 (321)
T ss_dssp SS-CCCEEEECTTSCEEEEECTT------SCEEEEET--TTCCEEEEEC-C---CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CC-ceeEEEEcCCCCEEEEEcCC------CeEEEEEC--CCcceeEEEc-C---CCCceEEEEECCCCCEEEEEeCCC
Confidence 11 11233333467788887753 46888998 3333322211 1 111112333344567777777655
|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.023 Score=45.74 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=35.2
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.....++|.+..++++|+++++++|++ ++++|.++.+++++....
T Consensus 22 ~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~ 67 (118)
T 3fg8_A 22 GLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGS 67 (118)
T ss_dssp TCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTS
T ss_pred CceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchH
Confidence 333445588888889999999999999 888988888887765433
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.66 E-value=2.4 Score=46.28 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=35.1
Q ss_pred cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 538 PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
.+++.++++..+.. ....+++.+|+ .+.+...+.............+.....++++++.++.++ ...+|.+++
T Consensus 295 pDg~~l~~~~~~~~-~~~~~i~~~d~--~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g----~~~l~~~~~ 367 (741)
T 2ecf_A 295 RDPQHLSFQRQSRD-QKKLDLVEVTL--ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG----FQHLYRIDS 367 (741)
T ss_dssp EETTEEEEEEEETT-SSEEEEEEEET--TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS----SCEEEEECS
T ss_pred CCCCEEEEEEeccc-CCeEEEEEEEC--CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC----ccEEEEEcC
Confidence 45555554443221 22468999999 566665553211100000112334445666666665443 245666664
|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.019 Score=45.58 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
..++|.+..++++|+++++++||+ ++++|..+..+++..
T Consensus 26 i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~ 65 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDF 65 (118)
T ss_dssp EEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTG
T ss_pred EEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhccccc
Confidence 334577777889999999999999 888888877776543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=92.54 E-value=8.2 Score=37.52 Aligned_cols=189 Identities=11% Similarity=0.033 Sum_probs=86.9
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.+++.++.|+.++ .+.++|..++ +....-.. ..... .+.+.. +++.+++.||.+ ..+.++|+.
T Consensus 149 pdg~~l~sgs~dg-----~v~iwd~~~~--~~~~~~~~--h~~~v-~~v~~s~~~~~~~~s~~~d------g~v~~wd~~ 212 (357)
T 4g56_B 149 SDGTQAVSGGKDF-----SVKVWDLSQK--AVLKSYNA--HSSEV-NCVAACPGKDTIFLSCGED------GRILLWDTR 212 (357)
T ss_dssp SSSSEEEEEETTS-----CEEEEETTTT--EEEEEECC--CSSCE-EEEEECTTCSSCEEEEETT------SCEEECCTT
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCC--cEEEEEcC--CCCCE-EEEEEccCCCceeeeeccC------CceEEEECC
Confidence 3445667776543 5888999887 43322111 11111 112222 333466666643 257778875
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEE--CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVY--GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSA 523 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~ 523 (625)
+.. -..... .........++.+ .++.+++.|+.+ ..+.+||+.+. + .+...
T Consensus 213 ~~~--~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d---------~~i~~wd~~~~--~--~~~~~---------- 265 (357)
T 4g56_B 213 KPK--PATRID--FCASDTIPTSVTWHPEKDDTFACGDET---------GNVSLVNIKNP--D--SAQTS---------- 265 (357)
T ss_dssp SSS--CBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESS---------SCEEEEESSCG--G--GCEEE----------
T ss_pred CCc--eeeeee--eccccccccchhhhhcccceEEEeecc---------cceeEEECCCC--c--EeEEE----------
Confidence 543 111110 1111111223333 233677777653 56888998732 1 12222
Q ss_pred CCCCCccceEEEEec-CC-EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC-CcEEEEEc
Q 048754 524 VVPPPRLDHVAVSMP-CG-RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG-GTRVLVLG 600 (625)
Q Consensus 524 ~~p~~r~~~~~~~~~-~~-~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~-~~~i~i~G 600 (625)
........++.+. ++ ++++.|+.+ ..|.+||+ .+.+-... .+ ....-.+++..+ ++.+++-|
T Consensus 266 --~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~--~~~~~~~~--~~---H~~~V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 266 --AVHSQNITGLAYSYHSSPFLASISED------CTVAVLDA--DFSEVFRD--LS---HRDFVTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp --CCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECT--TSCEEEEE--CC---CSSCEEEEEECSSSTTEEEEE
T ss_pred --eccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEEC--CCCcEeEE--CC---CCCCEEEEEEeCCCCCEEEEE
Confidence 1111122333332 33 566666642 46888998 44433222 11 111112233332 56788888
Q ss_pred CcCCCCCccCceEEEEccC
Q 048754 601 GHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 601 G~~~~~~~~~d~~~~~~~~ 619 (625)
|.++. |.+.++.+
T Consensus 331 s~Dg~------v~iW~~~~ 343 (357)
T 4g56_B 331 GWDHK------VLHHHLPS 343 (357)
T ss_dssp ETTSC------EEEEECC-
T ss_pred cCCCe------EEEEECCC
Confidence 86653 44555544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=92.48 E-value=7.9 Score=37.22 Aligned_cols=223 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.++|+.+. ..-..+. ... ..-.+++...++..++.||.+ ..+.+||+.+.
T Consensus 66 d~~~l~s~s~Dg------~v~iWd~~~~-~~~~~~~---~~~-~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~ 129 (340)
T 1got_B 66 DSRLLLSASQDG------KLIIWDSYTT-NKVHAIP---LRS-SWVMTCAYAPSGNYVACGGLD-----NICSIYNLKTR 129 (340)
T ss_dssp TSSEEEEEETTT------EEEEEETTTC-CEEEEEE---CSS-SCEEEEEECTTSSEEEEEETT-----CEEEEEETTTC
T ss_pred CCCEEEEEeCCC------cEEEEECCCC-CcceEee---cCC-ccEEEEEECCCCCEEEEEeCC-----CeEEEEECccC
Confidence 345666666533 2778887653 1122221 111 111222223344566777754 35788888765
Q ss_pred CCEEE---EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceE-EcCCCCCCCCCCcceEEE
Q 048754 395 QPTWI---EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWR-EIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 395 ~~~W~---~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~~~p~~r~~~~~~~ 470 (625)
+.... .+... .... .++...+++. ++.|+.+ ..+.++|+.+.. .. .+.. ...+ -.++..
T Consensus 130 ~~~~~~~~~~~~h---~~~v-~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~--~~~~~~~--h~~~--v~~~~~ 192 (340)
T 1got_B 130 EGNVRVSRELAGH---TGYL-SCCRFLDDNQ-IVTSSGD------TTCALWDIETGQ--QTTTFTG--HTGD--VMSLSL 192 (340)
T ss_dssp SBSCEEEEEEECC---SSCE-EEEEEEETTE-EEEEETT------SCEEEEETTTTE--EEEEECC--CSSC--EEEEEE
T ss_pred CCcceeEEEecCC---CccE-EEEEECCCCc-EEEEECC------CcEEEEECCCCc--EEEEEcC--CCCc--eEEEEE
Confidence 22111 12111 1111 1222334555 4445432 357788976543 22 1111 1111 123333
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
..++.+++.|+.+ ..+.++|+.+. . .+.... .....-.++....++++++.|+.
T Consensus 193 ~~~~~~l~sg~~d---------~~v~~wd~~~~--~--~~~~~~-----------~h~~~v~~v~~~p~~~~l~s~s~-- 246 (340)
T 1got_B 193 APDTRLFVSGACD---------ASAKLWDVREG--M--CRQTFT-----------GHESDINAICFFPNGNAFATGSD-- 246 (340)
T ss_dssp CTTSSEEEEEETT---------SCEEEEETTTC--S--EEEEEC-----------CCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCCEEEEEeCC---------CcEEEEECCCC--e--eEEEEc-----------CCcCCEEEEEEcCCCCEEEEEcC--
Confidence 4455677777764 57788898732 2 222220 00111123333346778888775
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+..-..... .......-.++...+++.+++.|+.++
T Consensus 247 ----d~~v~iwd~--~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 247 ----DATCRLFDL--RADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ----TSCEEEEET--TTTEEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CCcEEEEEC--CCCcEEEEEc--cCCcccceEEEEECCCCCEEEEECCCC
Confidence 346888888 3332211111 110000112333445667777777554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.38 E-value=9.1 Score=37.67 Aligned_cols=222 Identities=9% Similarity=-0.051 Sum_probs=100.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||... .....+. . .. ..-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 119 ~~~~l~~~~~dg------~i~i~~~~~--~~~~~~~--~-~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 181 (425)
T 1r5m_A 119 DGNSIVTGVENG------ELRLWNKTG--ALLNVLN--F-HR-APIVSVKWNKDGTHIISMDVE-----NVTILWNVISG 181 (425)
T ss_dssp TSSEEEEEETTS------CEEEEETTS--CEEEEEC--C-CC-SCEEEEEECTTSSEEEEEETT-----CCEEEEETTTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCC--Ceeeecc--C-CC-ccEEEEEECCCCCEEEEEecC-----CeEEEEECCCC
Confidence 345666666432 378888433 2333331 1 11 111222222334455566543 35888998877
Q ss_pred CCEEEE-cCCCCCC-----------CCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC
Q 048754 395 QPTWIE-VSGGAPP-----------LPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 395 ~~~W~~-~~~~~~p-----------~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
.... +.....+ ......+.+...++ .++.|+.. ..+.+||+.+....... .. ...+
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------g~i~~~d~~~~~~~~~~-~~--~~~~ 249 (425)
T 1r5m_A 182 --TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK------GAIFVYQITEKTPTGKL-IG--HHGP 249 (425)
T ss_dssp --EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGG------GCEEEEETTCSSCSEEE-CC--CSSC
T ss_pred --cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC------CeEEEEEcCCCceeeee-cc--CCCc
Confidence 4332 2211101 00002233334454 45666632 46889998665432222 11 1111
Q ss_pred CCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 463 RLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 463 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
-.++....++.+++.|+.+ ..+.+||+.+. .. +.... .....-.++....++ +
T Consensus 250 --i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~--~~--~~~~~-----------~~~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 250 --ISVLEFNDTNKLLLSASDD---------GTLRIWHGGNG--NS--QNCFY-----------GHSQSIVSASWVGDD-K 302 (425)
T ss_dssp --EEEEEEETTTTEEEEEETT---------SCEEEECSSSB--SC--SEEEC-----------CCSSCEEEEEEETTT-E
T ss_pred --eEEEEECCCCCEEEEEcCC---------CEEEEEECCCC--cc--ceEec-----------CCCccEEEEEECCCC-E
Confidence 1233344444566666643 56788888732 21 11110 111112233333355 6
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
++.|+. ...+.+||+ .+..-..... + ....-.++....++.+++.|+.++
T Consensus 303 l~~~~~------d~~i~i~d~--~~~~~~~~~~-~---~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 303 VISCSM------DGSVRLWSL--KQNTLLALSI-V---DGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp EEEEET------TSEEEEEET--TTTEEEEEEE-C---TTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeC------CCcEEEEEC--CCCcEeEecc-c---CCccEEEEEEcCCCCEEEEEECCC
Confidence 666664 347889998 3333222111 0 111122334445667788887554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.30 E-value=3.5 Score=45.16 Aligned_cols=205 Identities=12% Similarity=0.113 Sum_probs=94.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC--CEEEEEccCCCCCccccEEEEECC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG--SWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.+++.|+.+. .+.++|+.+ ..|..+....... ..-.++.+ .+ +.+++.|+.++ .+.+||+.
T Consensus 67 ~~~l~s~s~Dg------~I~vwd~~~--~~~~~~~~~~~h~--~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~ 131 (753)
T 3jro_A 67 GTILASCSYDG------KVLIWKEEN--GRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFK 131 (753)
T ss_dssp CSEEEEEETTS------CEEEEEEET--TEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS-----EEEEEECC
T ss_pred CCEEEEEeCCC------eEEEEECCC--CcccccccccCCC--CCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEee
Confidence 55666776533 288899887 5665543221111 11222222 22 45777777543 58888876
Q ss_pred CCCCE-EEEcCCCCCCCCCccceEEEE-c-------------CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCC
Q 048754 393 AKQPT-WIEVSGGAPPLPRSWHSSCII-E-------------GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTS 457 (625)
Q Consensus 393 t~~~~-W~~~~~~~~p~~r~~~~~~~~-~-------------~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 457 (625)
+.... -..+... +.+ -.++.+ . ++.+++.|+.+ ..+.+||+.+....+..+..-
T Consensus 132 ~~~~~~~~~~~~~--~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~ 200 (753)
T 3jro_A 132 ENGTTSPIIIDAH--AIG---VNSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTL 200 (753)
T ss_dssp SSSCCCCEEEECC--SSC---EEEEEECCCC---------CGGGCCEEEEETT------SCEEEEEEETTTTEEEEEEEE
T ss_pred cCCCcceeEeecC--CCc---eEEEEecCcccccccccccCCCCCEEEEEECC------CeEEEEeccCCcccceeeeee
Confidence 65111 0111110 100 111122 1 23556666632 257788876655445443210
Q ss_pred CCCCCCCcceEEEECC---cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEE
Q 048754 458 WSPPSRLGHSLSVYGR---TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVA 534 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~ 534 (625)
......-.+++...+ +.+++.||.+ ..+.+||+.+....+...... .......-.++
T Consensus 201 -~~h~~~V~~l~~sp~~~~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~l 260 (753)
T 3jro_A 201 -EGHSDWVRDVAWSPTVLLRSYLASVSQD---------RTCIIWTQDNEQGPWKKTLLK----------EEKFPDVLWRA 260 (753)
T ss_dssp -CCCSSCEEEEEECCCCSSSEEEEEEESS---------SCEEEEEESSSSSCCBCCBSS----------SSCCSSCCCCE
T ss_pred -cCCCCcEEEEEeccCCCCCCEEEEEecC---------CEEEEecCCCCCCcceeEEec----------cCCCCCceEEE
Confidence 001111123333334 5788887764 567788887432222211111 00111111223
Q ss_pred EEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 535 VSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 535 ~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
....++..++.||.+ ..|.+||+. ....|...
T Consensus 261 ~~spdg~~l~s~s~D------g~I~vwd~~-~~~~~~~~ 292 (753)
T 3jro_A 261 SWSLSGNVLALSGGD------NKVTLWKEN-LEGKWEPA 292 (753)
T ss_dssp EECTTTCCEEEECSS------SCEECCBCC-SSSCCBCC
T ss_pred EEcCCCCEEEEEcCC------CEEEEEecC-CCCCcccc
Confidence 333467777777753 356666663 23455444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.25 E-value=7 Score=36.05 Aligned_cols=99 Identities=9% Similarity=0.103 Sum_probs=51.3
Q ss_pred ccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC-CCCceEEcCCCCCC
Q 048754 382 LLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT-DKPMWREIPTSWSP 460 (625)
Q Consensus 382 ~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~-~~~~W~~~~~~~~p 460 (625)
....++++|+.++ ....+... + . .-.+.....+++.+++++ . ..++++|+.+ .. ...+... .
T Consensus 20 ~~~~i~~~d~~~~--~~~~~~~~--~-~-~v~~~~~spdg~~l~~~~---~----~~i~~~d~~~~~~--~~~~~~~--~ 82 (297)
T 2ojh_A 20 MRSSIEIFNIRTR--KMRVVWQT--P-E-LFEAPNWSPDGKYLLLNS---E----GLLYRLSLAGDPS--PEKVDTG--F 82 (297)
T ss_dssp CCEEEEEEETTTT--EEEEEEEE--S-S-CCEEEEECTTSSEEEEEE---T----TEEEEEESSSCCS--CEECCCT--T
T ss_pred cceeEEEEeCCCC--ceeeeccC--C-c-ceEeeEECCCCCEEEEEc---C----CeEEEEeCCCCCC--ceEeccc--c
Confidence 3467999999888 65544321 1 1 112232333445555553 1 3789999876 54 5554421 1
Q ss_pred CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 461 PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 461 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
....-.++....+++.+++++..... ...+|.+++.+
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~-----~~~l~~~~~~~ 119 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFG-----KSAIYLLPSTG 119 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTS-----SCEEEEEETTC
T ss_pred ccccccceEECCCCCEEEEEEeCCCC-----cceEEEEECCC
Confidence 11111233344444555555533222 36888898873
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=91.97 E-value=16 Score=39.56 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=13.4
Q ss_pred cEEEEECCCCCCEEEEcCC
Q 048754 385 DVFVLDLDAKQPTWIEVSG 403 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~ 403 (625)
.++++|+.++ ....+..
T Consensus 173 ~i~~~d~~~g--~~~~~~~ 189 (741)
T 2ecf_A 173 NLWVIDLASG--RQMQLTA 189 (741)
T ss_dssp EEEEEETTTT--EEEECCC
T ss_pred cEEEEecCCC--CEEEecc
Confidence 7999999887 7776654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.85 E-value=5.5 Score=39.07 Aligned_cols=152 Identities=12% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++|+.+. .-.... ..+.+......... .++.+++.|+.+ ..+.+||+.+
T Consensus 111 ~~~~l~s~~~d~------~i~iwd~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFDK------TLKVWDTNTL--QTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETTS------EEEEEETTTT--EEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSS
T ss_pred CCcEEEEEeCCC------eEEEeeCCCC--ccceec--cCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCC
Confidence 344666666432 3888888762 322221 11111111111111 123366666643 3588999887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC------C----CC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW------S----PP 461 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~------~----p~ 461 (625)
.+... .+... .. . -.++.+ ++..+++.|+.+ ..+.+||+.+.......+.... . ..
T Consensus 176 ~~~~~-~~~~~---~~-~-v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 176 GSCSH-ILQGH---RQ-E-ILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SCCCE-EECCC---CS-C-EEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred cceee-eecCC---CC-c-EEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccccceeecccccc
Confidence 63222 22211 11 1 122223 233367767632 2578888765443333332100 0 00
Q ss_pred CCC-cceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 462 SRL-GHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 462 ~r~-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
... -.++....++..++.|+.+ ..+.+||+.+
T Consensus 244 ~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~ 276 (408)
T 4a11_B 244 HNGKVNGLCFTSDGLHLLTVGTD---------NRMRLWNSSN 276 (408)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTT
T ss_pred ccCceeEEEEcCCCCEEEEecCC---------CeEEEEECCC
Confidence 111 1223333344566666643 5688899874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=11 Score=39.23 Aligned_cols=248 Identities=13% Similarity=0.098 Sum_probs=113.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEec--cCCCCce-EEcccCCCCCCccceeEEEE-----cCCEEEEEccCCCCCccccE
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNL--DAANPEW-RRVSVKSSPPGRWGHTLSSL-----NGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~--~~~~~~W-~~~~~~~~p~~r~~~~~~~~-----~~~~iyv~GG~~~~~~~~~~ 386 (625)
+..||+.+.- +.+.+||+ .+ .+- ..+. ....-..++.. +++++|+..-. .+.+
T Consensus 190 g~~l~v~~~d-------~~V~v~D~~~~t--~~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v 250 (543)
T 1nir_A 190 GRYLLVIGRD-------ARIDMIDLWAKE--PTKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAYW-----PPQF 250 (543)
T ss_dssp SCEEEEEETT-------SEEEEEETTSSS--CEEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEE
T ss_pred CCEEEEECCC-------CeEEEEECcCCC--CcEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeE
Confidence 4567776531 45999999 44 222 2222 11111223333 45666665422 2457
Q ss_pred EEEECCCCCCEEEEcCC--CC------CCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCce-EEcCCC
Q 048754 387 FVLDLDAKQPTWIEVSG--GA------PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW-REIPTS 457 (625)
Q Consensus 387 ~~~d~~t~~~~W~~~~~--~~------~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~ 457 (625)
.++|..+.+.. ..++. +. .|.+|..+....-++..+|+... ..+.++++|..+..... ..++
T Consensus 251 ~v~D~~t~~~~-~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~~i~-- 321 (543)
T 1nir_A 251 AIMDGETLEPK-QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVTSIG-- 321 (543)
T ss_dssp EEEETTTCCEE-EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEEEEE--
T ss_pred EEEeccccccc-eeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeEEec--
Confidence 88898877322 22221 10 02223322222223555665443 12578889976543222 1222
Q ss_pred CCCCCCCcceEEEECCcE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE
Q 048754 458 WSPPSRLGHSLSVYGRTK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS 536 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 536 (625)
..+.-+..+.-.+++ +|+.+.. .+.+.++|+.+ .+-...-.. +..|.+..+.. +.
T Consensus 322 ---~~~~~~~~~~spdg~~l~va~~~---------~~~v~v~D~~t--g~l~~~i~~---------g~~ph~g~g~~-~~ 377 (543)
T 1nir_A 322 ---AAPFLHDGGWDSSHRYFMTAANN---------SNKVAVIDSKD--RRLSALVDV---------GKTPHPGRGAN-FV 377 (543)
T ss_dssp ---CCSSCCCEEECTTSCEEEEEEGG---------GTEEEEEETTT--TEEEEEEEC---------SSSBCCTTCEE-EE
T ss_pred ---cCcCccCceECCCCCEEEEEecC---------CCeEEEEECCC--CeEEEeecc---------CCCCCCCCCcc-cC
Confidence 123334454544444 5544322 36788899884 232222111 12233222222 23
Q ss_pred ecC-CEEEEEecCCCCCCCCCcEEEEeCCCC---CCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcC-cCCCCCccCc
Q 048754 537 MPC-GRIIIFGGSIAGLHSPSQLFLLDPSEE---KPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGG-HTGEEWVLNE 611 (625)
Q Consensus 537 ~~~-~~l~v~GG~~~~~~~~~~v~~~d~~~~---~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG-~~~~~~~~~d 611 (625)
..+ +.+|+.+... .+.|-++|+... ...|+.+....... .....+.+.++++.+..+. .+++...-+.
T Consensus 378 ~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 378 HPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp ETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 333 6788876532 346788887311 12387665311111 1112233334444444443 2332223467
Q ss_pred eEEEEccCCC
Q 048754 612 LHELCLASKQ 621 (625)
Q Consensus 612 ~~~~~~~~~~ 621 (625)
|.++|+.+.+
T Consensus 451 v~v~d~~~~~ 460 (543)
T 1nir_A 451 VAVFDLKNLD 460 (543)
T ss_dssp EEEEETTCTT
T ss_pred EEEEECCCCC
Confidence 7888876654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=17 Score=39.22 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=93.4
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCC-----------CccccEEEEECCCCCCEEEE
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQ-----------GLLNDVFVLDLDAKQPTWIE 400 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~-----------~~~~~~~~~d~~t~~~~W~~ 400 (625)
.++++|+.+ .+........ ... .+.+.. +++.||+.. .... .....++++++.+.+..-..
T Consensus 152 ~i~v~d~~t--g~~~~~~~~~---~~~-~~~~wspDg~~l~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~ 224 (710)
T 2xdw_A 152 TIKFMKVDG--AKELPDVLER---VKF-SCMAWTHDGKGMFYNA-YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224 (710)
T ss_dssp EEEEEETTT--TEEEEEEEEE---ECS-CCEEECTTSSEEEEEE-CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred EEEEEECCC--CCCCcccccC---ccc-ceEEEEeCCCEEEEEE-ECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence 589999987 4555432111 111 122222 344455443 3221 23456899998876311112
Q ss_pred cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCC------CCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 401 VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTT------DKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 401 ~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~------~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
+.... ..+......... +++.+++..... ....+.++++|+++ ....+..+... .... ......++
T Consensus 225 v~~~~-~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~s~dg 297 (710)
T 2xdw_A 225 CAEFP-DEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDN--FEGE--YDYVTNEG 297 (710)
T ss_dssp EECCT-TCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS--SSSC--EEEEEEET
T ss_pred EeccC-CCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCC--CCcE--EEEEeccC
Confidence 21110 112222223233 444444433211 11246899999865 32247776532 1111 12223344
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEe-cCCEEEEEecCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM-PCGRIIIFGGSIAG 551 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~ 551 (625)
+.||+.+..... ...++.+|+.+.. ..|+.+... ........+.. .++++++....+
T Consensus 298 ~~l~~~s~~~~~------~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~lv~~~~~~-- 356 (710)
T 2xdw_A 298 TVFTFKTNRHSP------NYRLINIDFTDPEESKWKVLVPE-------------HEKDVLEWVACVRSNFLVLCYLHD-- 356 (710)
T ss_dssp TEEEEEECTTCT------TCEEEEEETTSCCGGGCEEEECC-------------CSSCEEEEEEEETTTEEEEEEEET--
T ss_pred CEEEEEECCCCC------CCEEEEEeCCCCCcccceeccCC-------------CCCCeEEEEEEEcCCEEEEEEEEC--
Confidence 488887654211 3678999987422 158877533 12111122223 367777765432
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
....++++++
T Consensus 357 --g~~~l~~~~~ 366 (710)
T 2xdw_A 357 --VKNTLQLHDL 366 (710)
T ss_dssp --TEEEEEEEET
T ss_pred --CEEEEEEEEC
Confidence 1457899998
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=91.60 E-value=12 Score=37.57 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=34.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+ .....+.... .......++....++.+++.|+.++ .+.++|+...
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKG--NILRVFASSD-TINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTS--CEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSC
T ss_pred CCCEEEEEeCCC------EEEEeeccC--CceeEEeccC-CCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcc
Confidence 345666666533 278889876 3444332121 1111222333333455777777543 5888898654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=91.54 E-value=3 Score=40.75 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=63.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.+||+.+ ..|..+. ........ .++....++..++.|+.++ .+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~--~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDG--NGWKHAR--TFSDHDKIVTCVDWAPKSNRIVTCSQDR-----NAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEET--TEEEECC--CBCCCSSCEEEEEECTTTCCEEEEETTS-----SEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccC--CceEEEE--EEecCCceEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCC
Confidence 445666665432 377888876 4666552 22111112 2222233445666776443 588888877
Q ss_pred CCCE-EEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPT-WIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~-W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
. . |....... .....-.+.+...++..++.|+.+ ..+.+||+.+... |..+..-..+....-.++....
T Consensus 87 ~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 D--GTWKQTLVLL-RLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQEND-WWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ----CCCCEEECC-CCSSCEEEEECCTTSSCCEEEESS------SCEEECCC------CCCCEEECSSCCSCEEEEEECT
T ss_pred C--CceeeeeEec-ccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCccc-ceeeeEeecccCCCeEEEEEcC
Confidence 6 3 32221110 111111122222334556666532 2567778755431 2111100011111122333334
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
++.+++.|+.+ ..+.+||+.
T Consensus 157 ~~~~l~~~~~d---------~~i~iwd~~ 176 (377)
T 3dwl_C 157 NNVLLAAGCAD---------RKAYVLSAY 176 (377)
T ss_dssp TSSEEEEEESS---------SCEEEEEEC
T ss_pred CCCEEEEEeCC---------CEEEEEEEE
Confidence 44677777653 467778875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.25 E-value=18 Score=39.48 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
++..+++|+.+ ..+.+||..++ ... .+... ...-.+.+...++..++.|+.+ ..+.+||+.+
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~--~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~ 128 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTG--EKVVDFEAH----PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWEN 128 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTC--CEEEEEECC----SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGG
T ss_pred CCCEEEEEeCC-----CeEEEEECCCC--cEEEEEecC----CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCC
Confidence 33466666643 36889999877 433 22211 1111122222344455555532 3578888765
Q ss_pred CCCceEE-cCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 447 DKPMWRE-IPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 447 ~~~~W~~-~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
.. .... +.. ...+ -.+++... ++.+++.|+.+ ..+.+||+.+....+....
T Consensus 129 ~~-~~~~~~~~--~~~~--v~~~~~~p~~~~~l~~~~~d---------g~v~vwd~~~~~~~~~~~~------------- 181 (814)
T 3mkq_A 129 NW-ALEQTFEG--HEHF--VMCVAFNPKDPSTFASGCLD---------RTVKVWSLGQSTPNFTLTT------------- 181 (814)
T ss_dssp TS-EEEEEEEC--CSSC--EEEEEEETTEEEEEEEEETT---------SEEEEEETTCSSCSEEEEC-------------
T ss_pred Cc-eEEEEEcC--CCCc--EEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcceeEEec-------------
Confidence 42 1211 111 1111 12333333 44677776653 5788899874322222211
Q ss_pred CCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 525 VPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 525 ~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
............. ++.+++.|+. ...+.+||+. +..-...-. + + ...-.++...+++.+++.||.
T Consensus 182 -~~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~~~d~~--~~~~~~~~~-~--~-~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 182 -GQERGVNYVDYYPLPDKPYMITASD------DLTIKIWDYQ--TKSCVATLE-G--H-MSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp -CCTTCCCEEEECCSTTCCEEEEECT------TSEEEEEETT--TTEEEEEEE-C--C-SSCEEEEEECSSSSEEEEEET
T ss_pred -CCCCCEEEEEEEECCCCCEEEEEeC------CCEEEEEECC--CCcEEEEEc-C--C-CCCEEEEEEcCCCCEEEEEeC
Confidence 1111112222232 5667777775 3478889983 332211110 1 1 111123334445667777776
Q ss_pred CC
Q 048754 603 TG 604 (625)
Q Consensus 603 ~~ 604 (625)
++
T Consensus 249 dg 250 (814)
T 3mkq_A 249 DG 250 (814)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.048 Score=45.62 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=28.6
Q ss_pred CCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 198 GGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 198 ~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.+..++++|+++++++|++ ++++|..+..+++++
T Consensus 46 ~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~ 80 (149)
T 3d72_A 46 KDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPD 80 (149)
T ss_dssp TTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTT
T ss_pred CCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCcc
Confidence 4667779999999999999 888988887777765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=91.06 E-value=13 Score=36.67 Aligned_cols=155 Identities=14% Similarity=0.056 Sum_probs=71.6
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEE---EEcCCCCCCCCCccceEEEE-cC-CEEEEEcCcCCCCceeceEEEE
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTW---IEVSGGAPPLPRSWHSSCII-EG-SKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W---~~~~~~~~p~~r~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
++.+++.|+.+ ..+.+||+.++.... ..+...... ... -..+.+ .+ ..+++.|+.+ ..+.++
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~p~~~~~l~s~~~d------g~i~iw 159 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGH-TKR-VGIVAWHPTAQNVLLSAGCD------NVILVW 159 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECC-SSC-EEEEEECSSBTTEEEEEETT------SCEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCC-CCe-EEEEEECcCCCCEEEEEcCC------CEEEEE
Confidence 44577777654 358888887762110 000000000 111 112223 22 2466666643 358889
Q ss_pred ecCCCCCceE-EcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 443 DLTTDKPMWR-EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 443 d~~~~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
|+.+.. .. .+...... ..-.++....++.+++.|+.+ ..+.+||+.+. + .+....
T Consensus 160 d~~~~~--~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~--~--~~~~~~------- 215 (402)
T 2aq5_A 160 DVGTGA--AVLTLGPDVHP--DTIYSVDWSRDGALICTSCRD---------KRVRVIEPRKG--T--VVAEKD------- 215 (402)
T ss_dssp ETTTTE--EEEEECTTTCC--SCEEEEEECTTSSCEEEEETT---------SEEEEEETTTT--E--EEEEEE-------
T ss_pred ECCCCC--ccEEEecCCCC--CceEEEEECCCCCEEEEEecC---------CcEEEEeCCCC--c--eeeeec-------
Confidence 986644 22 22100011 111233333344666666643 57889998732 2 222210
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
..........+....++++++.|... .....+.+||+.
T Consensus 216 --~~~~~~~~~~~~~~~~~~~l~~g~~~---~~d~~i~iwd~~ 253 (402)
T 2aq5_A 216 --RPHEGTRPVHAVFVSEGKILTTGFSR---MSERQVALWDTK 253 (402)
T ss_dssp --CSSCSSSCCEEEECSTTEEEEEEECT---TCCEEEEEEETT
T ss_pred --cCCCCCcceEEEEcCCCcEEEEeccC---CCCceEEEEcCc
Confidence 00111112233444477888777321 124578899984
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=90.98 E-value=9.9 Score=35.30 Aligned_cols=218 Identities=7% Similarity=-0.088 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.... .+.+.+||... +...+..+. ....-++++...++.+|+.... .+.+++||+. +
T Consensus 30 ~g~l~v~~~~------~~~v~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g 92 (300)
T 2qc5_A 30 DGKVWFTQHK------ANKISSLDQSG---RIKEFEVPT--PDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-G 92 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTTS---CEEEEECSS--TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-S
T ss_pred CCCEEEEcCC------CCeEEEECCCC---ceEEEECCC--CCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-C
Confidence 4678886532 12378888762 444432111 1112233343345568887532 1358899987 5
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
++..+... .....-+..+...++.+|+.... ...++.||++ .. ...+... .....-++++...++
T Consensus 93 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~--~~~~~~~--~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 93 --GFTEYPLP--QPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GT--IYEYDLP--NKGSYPAFITLGSDN 157 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CeEEecCC--CCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CC--EEEccCC--CCCCCceeEEECCCC
Confidence 45544321 11122233333335578876431 1368888875 43 4433211 011122344444445
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
++|+.... ...+++||+. . +...+... ...........-.++.||+....
T Consensus 158 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~------ 207 (300)
T 2qc5_A 158 ALWFTENQ---------NNSIGRITNT-G--KLEEYPLP------------TNAAAPVGITSGNDGALWFVEIM------ 207 (300)
T ss_dssp SEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECTTSSEEEEETT------
T ss_pred CEEEEecC---------CCeEEEECCC-C--cEEEeeCC------------CCCCCcceEEECCCCCEEEEccC------
Confidence 78876432 2568888874 2 34433211 01111122333336678886432
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+++||+ +..+........ ...-.++++..++.||+..
T Consensus 208 ~~~i~~~~~---~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 208 GNKIGRITT---TGEISEYDIPTP---NARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp TTEEEEECT---TCCEEEEECSST---TCCEEEEEECSTTCEEEEE
T ss_pred CCEEEEEcC---CCcEEEEECCCC---CCCceEEEECCCCCEEEec
Confidence 346899997 445555432111 1111233333455666654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=90.81 E-value=10 Score=35.15 Aligned_cols=238 Identities=6% Similarity=0.044 Sum_probs=113.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC--ccceeEEEE-cCCEEEEEccCCCCCccccEEEEEC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG--RWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~--r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
++.+|+..... ..+.+||... .....+........ ..-..++.. .++++|+.+... ...+.+||.
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g--~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~ 107 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEG--RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQ 107 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTS--CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECT
T ss_pred CCCEEEEECCC------CEEEEECCCC--cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECC
Confidence 45788876432 2388888764 22233321111111 111233332 466888886421 245888995
Q ss_pred CCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 392 DAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
... ....+... ....-+..+...++.+|+.... .+.+++||++... ...+... .....-.++++-
T Consensus 108 ~g~--~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~--~~~~~~~--~~~~~p~~i~~~ 172 (286)
T 1q7f_A 108 YGQ--FVRKFGAT---ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNV--LHKFGCS--KHLEFPNGVVVN 172 (286)
T ss_dssp TSC--EEEEECTT---TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCE--EEEEECT--TTCSSEEEEEEC
T ss_pred CCc--EEEEecCc---cCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCE--EEEeCCC--CccCCcEEEEEC
Confidence 543 33334321 1111133333344578886532 1468889864322 3333211 111112344444
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
.++.+|+.... ...+++||++ ......+... +. .......+.-.+++|||....+
T Consensus 173 ~~g~l~v~~~~---------~~~i~~~~~~--g~~~~~~~~~---------g~---~~~p~~i~~d~~G~l~v~~~~~-- 227 (286)
T 1q7f_A 173 DKQEIFISDNR---------AHCVKVFNYE--GQYLRQIGGE---------GI---TNYPIGVGINSNGEILIADNHN-- 227 (286)
T ss_dssp SSSEEEEEEGG---------GTEEEEEETT--CCEEEEESCT---------TT---SCSEEEEEECTTCCEEEEECSS--
T ss_pred CCCCEEEEECC---------CCEEEEEcCC--CCEEEEEccC---------Cc---cCCCcEEEECCCCCEEEEeCCC--
Confidence 45688887543 2678899986 3222222211 00 0111233333467888886431
Q ss_pred CCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccC
Q 048754 552 LHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLAS 619 (625)
Q Consensus 552 ~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~ 619 (625)
...|.+||+ ....-..+....... .-.++++..++.+|+.. . + +.|.+|++..
T Consensus 228 ---~~~i~~~~~--~g~~~~~~~~~~~~~---~~~~i~~~~~g~l~vs~-~--~----~~v~v~~~~~ 280 (286)
T 1q7f_A 228 ---NFNLTIFTQ--DGQLISALESKVKHA---QCFDVALMDDGSVVLAS-K--D----YRLYIYRYVQ 280 (286)
T ss_dssp ---SCEEEEECT--TSCEEEEEEESSCCS---CEEEEEEETTTEEEEEE-T--T----TEEEEEECSC
T ss_pred ---CEEEEEECC--CCCEEEEEcccCCCC---cceeEEECCCCcEEEEC-C--C----CeEEEEEccc
Confidence 127899997 332222332211111 12345566677888874 2 1 4566666644
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=90.81 E-value=11 Score=35.48 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=101.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccc-eeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWG-HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++++.+ ......- .. .... .+++...++..++.|+.+ ..+.+||+.+
T Consensus 34 ~~~~l~s~~~dg------~i~iw~~~~--~~~~~~~-~~---h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~ 96 (312)
T 4ery_A 34 NGEWLASSSADK------LIKIWGAYD--GKFEKTI-SG---HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSS 96 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTT--CCEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEeeCCC------eEEEEeCCC--cccchhh-cc---CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCC
Confidence 344556666432 277888765 3443321 11 1111 222223344567777654 3688899887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR 473 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~ 473 (625)
.+. -..+... .... .+.....++.+++.|+.+ ..+.+||+.+... -..+.. ...+ -.++....+
T Consensus 97 ~~~-~~~~~~~---~~~v-~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~-~~~~~~--~~~~--v~~~~~~~~ 160 (312)
T 4ery_A 97 GKC-LKTLKGH---SNYV-FCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKC-LKTLPA--HSDP--VSAVHFNRD 160 (312)
T ss_dssp CCE-EEEEECC---SSCE-EEEEECSSSSEEEEEETT------SCEEEEETTTCCE-EEEECC--CSSC--EEEEEECTT
T ss_pred CcE-EEEEcCC---CCCE-EEEEEcCCCCEEEEEeCC------CcEEEEECCCCEE-EEEecC--CCCc--EEEEEEcCC
Confidence 721 1222211 1111 122222344566666643 3578889765431 112221 1111 112223334
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
+.+++.|+.+ ..+.+||+.+. + .+.... ....+. ........+++.++.|+.
T Consensus 161 ~~~l~~~~~d---------~~i~~wd~~~~--~--~~~~~~---------~~~~~~-~~~~~~~~~~~~l~~~~~----- 212 (312)
T 4ery_A 161 GSLIVSSSYD---------GLCRIWDTASG--Q--CLKTLI---------DDDNPP-VSFVKFSPNGKYILAATL----- 212 (312)
T ss_dssp SSEEEEEETT---------SCEEEEETTTC--C--EEEEEC---------CSSCCC-EEEEEECTTSSEEEEEET-----
T ss_pred CCEEEEEeCC---------CcEEEEECCCC--c--eeeEEe---------ccCCCc-eEEEEECCCCCEEEEEcC-----
Confidence 4677777653 56888998732 2 222210 001111 112223335667777765
Q ss_pred CCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 554 SPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 554 ~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+.+||+ .+..-...- .+.......-.......++.+++.||.++
T Consensus 213 -d~~i~iwd~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 213 -DNTLKLWDY--SKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp -TTEEEEEET--TTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred -CCeEEEEEC--CCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 347889998 333322211 11111111112222334567777887654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=90.61 E-value=3.7 Score=40.04 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=13.7
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++.+++.|+. ...|.+||+.
T Consensus 238 ~~~~la~g~~------d~~i~~wd~~ 257 (357)
T 4g56_B 238 KDDTFACGDE------TGNVSLVNIK 257 (357)
T ss_dssp STTEEEEEES------SSCEEEEESS
T ss_pred ccceEEEeec------ccceeEEECC
Confidence 3567777775 3468888883
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=21 Score=38.47 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=93.9
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCC----------CceeceEEEEecCCCCCceE
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDA----------GVLLSDTYLLDLTTDKPMWR 452 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~----------~~~~~~~~~~d~~~~~~~W~ 452 (625)
..++++|+.++ ....... +.... ...+.. +++.||+. ..... ......++.+++.+....-.
T Consensus 151 ~~i~v~d~~tg--~~~~~~~---~~~~~-~~~~wspDg~~l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 223 (710)
T 2xdw_A 151 VTIKFMKVDGA--KELPDVL---ERVKF-SCMAWTHDGKGMFYN-AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI 223 (710)
T ss_dssp EEEEEEETTTT--EEEEEEE---EEECS-CCEEECTTSSEEEEE-ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE
T ss_pred EEEEEEECCCC--CCCcccc---cCccc-ceEEEEeCCCEEEEE-EECCccccccccccccCCCCEEEEEECCCCcccce
Confidence 47999999988 6654321 11111 122233 44444443 32221 01235688889866542112
Q ss_pred EcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC------CCCceeEeeeccccCcCCCCCCCC
Q 048754 453 EIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD------EEPQWKQLECNAFTGVGSQSAVVP 526 (625)
Q Consensus 453 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~------~~~~W~~~~~~~~~~~~~~~~~~p 526 (625)
.+... ...+....+...-.+++.+++........ ..++|++|+.+ ....+..+... .
T Consensus 224 ~v~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~----~~~l~~~d~~~~~~~~~~~~~~~~l~~~------------~ 286 (710)
T 2xdw_A 224 LCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDP----VNRLWYCDLQQESNGITGILKWVKLIDN------------F 286 (710)
T ss_dssp EEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSS----CCEEEEEEGGGSSSSSCSSCCCEEEECS------------S
T ss_pred EEecc-CCCCeEEEEEEEcCCCCEEEEEEEccCCC----ccEEEEEECcccccccCCccceEEeeCC------------C
Confidence 22111 11122223444444444444433221111 36899999873 22257666532 1
Q ss_pred CCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCC---CeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcC
Q 048754 527 PPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKP---SWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHT 603 (625)
Q Consensus 527 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~---~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~ 603 (625)
.. ....+...++.|++.+... .....|+.+|+. +. .|..+.... +. ..-.+....+++.+++....+
T Consensus 287 ~~--~~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~--~~~~~~~~~l~~~~--~~-~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 287 EG--EYDYVTNEGTVFTFKTNRH---SPNYRLINIDFT--DPEESKWKVLVPEH--EK-DVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp SS--CEEEEEEETTEEEEEECTT---CTTCEEEEEETT--SCCGGGCEEEECCC--SS-CEEEEEEEETTTEEEEEEEET
T ss_pred Cc--EEEEEeccCCEEEEEECCC---CCCCEEEEEeCC--CCCcccceeccCCC--CC-CeEEEEEEEcCCEEEEEEEEC
Confidence 11 1223334367788876532 124689999984 33 588875321 11 111223334456777666544
Q ss_pred CCCCccCceEEEEc
Q 048754 604 GEEWVLNELHELCL 617 (625)
Q Consensus 604 ~~~~~~~d~~~~~~ 617 (625)
+ ...+|++++
T Consensus 357 g----~~~l~~~~~ 366 (710)
T 2xdw_A 357 V----KNTLQLHDL 366 (710)
T ss_dssp T----EEEEEEEET
T ss_pred C----EEEEEEEEC
Confidence 3 244566655
|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.084 Score=42.23 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=35.2
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
..++|.+..++++|+++++++|++ ++++|..+..++++++...+
T Consensus 12 i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 56 (126)
T 3mjq_A 12 ILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEG 56 (126)
T ss_dssp EEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHH
T ss_pred EEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHH
Confidence 334577777789999999999999 88888888888887765543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.52 E-value=8 Score=37.78 Aligned_cols=200 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
..++++|+.++ ....+... .....+ ..... ++.+++... .........++.+|+++.. +..+... .+
T Consensus 168 ~~l~~~d~~~g--~~~~~~~~---~~~~~~-~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~--~~~l~~~-~~- 236 (396)
T 3c5m_A 168 CRLIKVDIETG--ELEVIHQD---TAWLGH-PIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSN--VRKIKEH-AE- 236 (396)
T ss_dssp EEEEEEETTTC--CEEEEEEE---SSCEEE-EEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCC--CEESSCC-CT-
T ss_pred ceEEEEECCCC--cEEeeccC---Cccccc-ceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCc--eeEeecc-CC-
Confidence 47899999887 55555421 111222 22222 333444332 1111122578999976544 6666531 11
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-CC
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-CG 540 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~ 540 (625)
...........+++.+++........ ...++++|+. +.+...+... +. . ...... ++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~----~~~l~~~d~~--~g~~~~l~~~------------~~--~--~~~~s~~dg 294 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQT----DRVIYKANPE--TLENEEVMVM------------PP--C--SHLMSNFDG 294 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTC----CEEEEEECTT--TCCEEEEEEC------------CS--E--EEEEECSSS
T ss_pred CccccceEECCCCCEEEEEecCCCCc----cceEEEEECC--CCCeEEeeeC------------CC--C--CCCccCCCC
Confidence 11111222333334333332221110 1239999987 3355555433 11 1 123333 56
Q ss_pred EEEEEecCCC----------CCCCCCcEEEEeCCCCCCCeEEEcCCCCCC------CCCCcceEEEECCcEEEEEcCcCC
Q 048754 541 RIIIFGGSIA----------GLHSPSQLFLLDPSEEKPSWRILNVPGQPP------KFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 541 ~l~v~GG~~~----------~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p------~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+++++.+... .......++.+|+ .+.....+....... ............+++.+++.....
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNT--KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEET--TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEec--ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 6666654321 0112468999999 455555554211100 000011223344555555554332
Q ss_pred CCCccCceEEEEccCCC
Q 048754 605 EEWVLNELHELCLASKQ 621 (625)
Q Consensus 605 ~~~~~~d~~~~~~~~~~ 621 (625)
. ...+|.+++.+..
T Consensus 373 ~---~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 373 G---VPAIYIADVPESY 386 (396)
T ss_dssp S---SCEEEEEECCTTC
T ss_pred C---CceEEEEEEcccc
Confidence 2 2568999887654
|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.096 Score=41.34 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=33.5
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHH--hhhcccCchhhhhHHhH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAH--NILSRLTPRDVASIGSV 239 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~--~~~~~~~~~~~~~~~~~ 239 (625)
.++.+...+++|+++++++|++ +++.+. .+..+++|++...+...
T Consensus 19 ~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~ 66 (118)
T 3icy_A 19 HLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNA 66 (118)
T ss_dssp EECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHH
T ss_pred EEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHH
Confidence 3366677779999999999999 665543 34678999987766443
|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.13 Score=40.59 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.4
Q ss_pred cccCC-CCCCcccccccccccCc-hhHHHHh--hhcccCchhhhhHHh
Q 048754 195 YFSGG-HSPLSQHQDICGILQLS-DEVLAHN--ILSRLTPRDVASIGS 238 (625)
Q Consensus 195 ~~~~~-~~~~~~n~~~~~~~g~~-~e~~~~~--~~~~~~~~~~~~~~~ 238 (625)
+++.+ ..++++|+++++++|++ ++++|.. +...++|++...+..
T Consensus 26 ~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (125)
T 3eeh_A 26 EFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKD 73 (125)
T ss_dssp EEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHH
T ss_pred EEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHH
Confidence 44666 67779999999999999 6777655 577888887665533
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.42 E-value=14 Score=36.21 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=33.2
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCc-EEEEEcCcCCCCCccCceEEEEc
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGT-RVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~-~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
++.+++.|+. ...+.+||+. +.+-...-. + ....-.++...+++ .+++.|+.++ .+.++++
T Consensus 274 ~~~~l~s~~~------dg~v~~wd~~--~~~~~~~~~-~---~~~~v~~~~~s~~~~~~l~s~~~d~------~i~iw~~ 335 (416)
T 2pm9_A 274 DEHLLLSSGR------DNTVLLWNPE--SAEQLSQFP-A---RGNWCFKTKFAPEAPDLFACASFDN------KIEVQTL 335 (416)
T ss_dssp CSSCEEEEES------SSEEEEECSS--SCCEEEEEE-C---SSSCCCCEEECTTCTTEEEECCSSS------EEEEEES
T ss_pred CCCeEEEEeC------CCCEEEeeCC--CCccceeec-C---CCCceEEEEECCCCCCEEEEEecCC------cEEEEEc
Confidence 5678888775 3468899983 333221111 1 11112234444555 6888888654 2445555
Q ss_pred cC
Q 048754 618 AS 619 (625)
Q Consensus 618 ~~ 619 (625)
.+
T Consensus 336 ~~ 337 (416)
T 2pm9_A 336 QN 337 (416)
T ss_dssp CC
T ss_pred cC
Confidence 44
|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.062 Score=42.90 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=34.2
Q ss_pred cccCCCCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIG 237 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~ 237 (625)
.++.+..++++|+++++++|++ +++.| ..+...++|++...+.
T Consensus 22 ~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~ 67 (125)
T 3nja_A 22 VLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVR 67 (125)
T ss_dssp EEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHH
T ss_pred EEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHH
Confidence 4477777889999999999998 66666 5677888998876653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=90.36 E-value=16 Score=36.69 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=51.6
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.|+.+ ..+.+||+.+..... .+.. .. ..-.+++...++..++.|+.+ ..+.+||+.
T Consensus 281 ~~l~~~~~d------~~i~vwd~~~~~~~~-~~~~--~~--~~v~~~~~~~~~~~l~sg~~d---------g~i~vwd~~ 340 (464)
T 3v7d_B 281 NIVVSGSYD------NTLIVWDVAQMKCLY-ILSG--HT--DRIYSTIYDHERKRCISASMD---------TTIRIWDLE 340 (464)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEE-EECC--CS--SCEEEEEEETTTTEEEEEETT---------SCEEEEETT
T ss_pred CEEEEEeCC------CeEEEEECCCCcEEE-EecC--CC--CCEEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Confidence 455556532 368888976543111 1111 11 111233344444566666653 578899987
Q ss_pred CCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 502 DEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 502 ~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
+ ...+... ........++.. ++..++.|+. ...+.+||+.
T Consensus 341 ~----~~~~~~~------------~~h~~~v~~~~~-~~~~l~s~s~------dg~v~vwd~~ 380 (464)
T 3v7d_B 341 N----GELMYTL------------QGHTALVGLLRL-SDKFLVSAAA------DGSIRGWDAN 380 (464)
T ss_dssp T----TEEEEEE------------CCCSSCEEEEEE-CSSEEEEEET------TSEEEEEETT
T ss_pred C----CcEEEEE------------eCCCCcEEEEEE-cCCEEEEEeC------CCcEEEEECC
Confidence 3 2233333 112222345555 4567777765 3468899984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=90.35 E-value=10 Score=36.38 Aligned_cols=106 Identities=10% Similarity=0.010 Sum_probs=51.1
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEc-CCEEEEEccCCCCCccccEEEEECCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLN-GSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
+.+++.|+.+. .+.+||+.+.. .-..+. . ..... .++.... ++.+++.|+.++ .+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~-~~~~~~--~-~~~~i-~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQ-CIKHYV--G-HGNAI-NELKFHPRDPNLLLSVSKDH-----ALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCC-EEEEEE--S-CCSCE-EEEEECSSCTTEEEEEETTS-----CEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhce-Eeeeec--C-CCCcE-EEEEECCCCCCEEEEEeCCC-----eEEEEEeecC
Confidence 46777777533 38889987631 112221 1 11111 1222222 445777777543 5899999877
Q ss_pred CCEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 395 QPTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 395 ~~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
+... +.... .....-.+.+...++..++.|+.+ ..+.+||+.+
T Consensus 149 --~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 192 (366)
T 3k26_A 149 --TLVAIFGGVE-GHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINS 192 (366)
T ss_dssp --EEEEEECSTT-SCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCS
T ss_pred --eEEEEecccc-cccCceeEEEECCCCCEEEEecCC------CCEEEEECCC
Confidence 4332 21110 111111222222344566666632 3577888754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=90.34 E-value=12 Score=35.36 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=30.2
Q ss_pred EEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 422 KLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 422 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.+++.||.+ ..+.+||+.+... ...+.. ...+ -.+++...++.+++.|+.+ ..+.+||+.
T Consensus 186 ~~~~s~~~d------~~i~i~d~~~~~~-~~~~~~--h~~~--v~~~~~s~~~~~l~s~s~D---------g~i~iwd~~ 245 (340)
T 4aow_A 186 PIIVSCGWD------KLVKVWNLANCKL-KTNHIG--HTGY--LNTVTVSPDGSLCASGGKD---------GQAMLWDLN 245 (340)
T ss_dssp CEEEEEETT------SCEEEEETTTTEE-EEEECC--CSSC--EEEEEECTTSSEEEEEETT---------CEEEEEETT
T ss_pred cEEEEEcCC------CEEEEEECCCCce-eeEecC--CCCc--EEEEEECCCCCEEEEEeCC---------CeEEEEEec
Confidence 455555532 2577888755431 111111 1111 1233333445677777753 567788887
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=22 Score=38.12 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=52.5
Q ss_pred eceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccc
Q 048754 436 LSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAF 515 (625)
Q Consensus 436 ~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~ 515 (625)
...++++|+++.. -..+... ......-..+....+++.++++..+.... ...++.+|+.+. .....+....
T Consensus 234 ~~~l~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~----~~~v~~~d~~~g-~~~~~~~~~~- 304 (706)
T 2z3z_A 234 HVTVGIYHLATGK--TVYLQTG-EPKEKFLTNLSWSPDENILYVAEVNRAQN----ECKVNAYDAETG-RFVRTLFVET- 304 (706)
T ss_dssp EEEEEEEETTTTE--EEECCCC-SCTTCEEEEEEECTTSSEEEEEEECTTSC----EEEEEEEETTTC-CEEEEEEEEE-
T ss_pred eeEEEEEECCCCc--eEeeccC-CCCceeEeeEEEECCCCEEEEEEeCCCCC----eeEEEEEECCCC-ceeeEEEEcc-
Confidence 3578999986654 4444321 11112222333334444444433322111 257889998832 1444443221
Q ss_pred cCcCCCCCCCCCCccceEEEEec--CCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 516 TGVGSQSAVVPPPRLDHVAVSMP--CGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 516 ~~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
...... ......... ++++++.+..+ ....+|.++. .......+
T Consensus 305 -------~~~~~~-~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~--~~~~~~~l 350 (706)
T 2z3z_A 305 -------DKHYVE-PLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDT--TGRLIRQV 350 (706)
T ss_dssp -------CSSCCC-CCSCCEECTTCSSEEEEEECTT----SSCEEEEEET--TSCEEEEC
T ss_pred -------CCCeEC-ccCCceeecCCCCEEEEEEccC----CccEEEEEEC--CCCEEEec
Confidence 000000 001223334 66766555432 2468899987 34555555
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.13 E-value=17 Score=36.54 Aligned_cols=151 Identities=10% Similarity=0.060 Sum_probs=69.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEecc--CCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLD--AANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~--~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+..|++.|+.+. .+.+||+. +. ..-..+.....+. +. .+++...++..++.|+.+ ..++.+++.
T Consensus 114 ~~~l~~~~~~dg------~v~iwd~~~~~~-~~~~~~~~~~~~~-~v-~~~~~sp~~~~l~~~~~~-----g~v~~~~~~ 179 (450)
T 2vdu_B 114 ESRLIACADSDK------SLLVFDVDKTSK-NVLKLRKRFCFSK-RP-NAISIAEDDTTVIIADKF-----GDVYSIDIN 179 (450)
T ss_dssp SSEEEEEEGGGT------EEEEEEECSSSS-SCEEEEEEEECSS-CE-EEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CCEEEEEECCCC------eEEEEECcCCCC-ceeeeeecccCCC-Cc-eEEEEcCCCCEEEEEeCC-----CcEEEEecC
Confidence 345667777532 27788877 32 1222221101111 11 122222344456666542 358888886
Q ss_pred CCCCEEEE--cCCCCCCCCCccceEEEEcC---CEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcce
Q 048754 393 AKQPTWIE--VSGGAPPLPRSWHSSCIIEG---SKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHS 467 (625)
Q Consensus 393 t~~~~W~~--~~~~~~p~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~ 467 (625)
+. .... +....... ..-.+.+...+ +.+++.|+.+ ..+.+||+.+.......+.. ...+. .+
T Consensus 180 ~~--~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v--~~ 246 (450)
T 2vdu_B 180 SI--PEEKFTQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFV--SS 246 (450)
T ss_dssp SC--CCSSCCCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCE--EE
T ss_pred Cc--ccccccceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCce--EE
Confidence 65 2111 00100011 11122233344 5677777643 36788887665422222211 11111 22
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 247 ~~~s-d~~~l~s~~~d---------~~v~vwd~~~ 271 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGD---------DKIFAWDWKT 271 (450)
T ss_dssp EEEC-STTEEEEEESS---------SEEEEEETTT
T ss_pred EEEC-CCCEEEEEeCC---------CeEEEEECCC
Confidence 2233 44666676643 5788899874
|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
Probab=90.12 E-value=0.046 Score=44.35 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=37.0
Q ss_pred hccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
+...+.....++|.+..++++|.++++++|++ ++++|.+++..+.|
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p 73 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAP 73 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCG
T ss_pred HHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccc
Confidence 33444555556688888999999999999999 99999999886665
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.12 E-value=9.9 Score=37.43 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=52.3
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCC-C-CccceEEEE-c-CCEEEEEcCcCCCCceeceEEEEec
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPL-P-RSWHSSCII-E-GSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~-~-r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
+.+++.|+.++ .+.+||+.+. +....-....+. . ...-..+.+ . +..+++.|+.+.. ...+.+||+
T Consensus 178 ~~~l~~~~~dg-----~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~ 247 (416)
T 2pm9_A 178 AHVFASAGSSN-----FASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDL 247 (416)
T ss_dssp TTEEEEESSSS-----CEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEET
T ss_pred CcEEEEEcCCC-----CEEEEECCCC--CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeC
Confidence 45777777543 5899999887 443222111000 0 111122233 2 2346666653321 125778887
Q ss_pred CCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 445 TTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 445 ~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+.......+.. .. ...-.++.... ++.+++.|+.+ ..+.+||+.+
T Consensus 248 ~~~~~~~~~~~~-~~--~~~v~~~~~s~~~~~~l~s~~~d---------g~v~~wd~~~ 294 (416)
T 2pm9_A 248 RNANTPLQTLNQ-GH--QKGILSLDWCHQDEHLLLSSGRD---------NTVLLWNPES 294 (416)
T ss_dssp TSTTSCSBCCCS-CC--SSCEEEEEECSSCSSCEEEEESS---------SEEEEECSSS
T ss_pred CCCCCCcEEeec-Cc--cCceeEEEeCCCCCCeEEEEeCC---------CCEEEeeCCC
Confidence 653211111110 01 11112232332 44677777653 5688888873
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=89.99 E-value=14 Score=36.41 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=54.0
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEE-EcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
.+++.|+.++ .+.++|+.+. ... .+. .. ....-.+.+...++.+++.|+.+ ..+.+||+.+.
T Consensus 145 ~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~ 208 (402)
T 2aq5_A 145 NVLLSAGCDN-----VILVWDVGTG--AAVLTLGPDV---HPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKG 208 (402)
T ss_dssp TEEEEEETTS-----CEEEEETTTT--EEEEEECTTT---CCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTT
T ss_pred CEEEEEcCCC-----EEEEEECCCC--CccEEEecCC---CCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCC
Confidence 4777777543 5889999887 544 221 11 11111222222344566666532 36888998664
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
......... .. .....+++...++.+++.|..... ...+.+||+.+
T Consensus 209 ~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~g~~~~~------d~~i~iwd~~~ 254 (402)
T 2aq5_A 209 TVVAEKDRP--HE-GTRPVHAVFVSEGKILTTGFSRMS------ERQVALWDTKH 254 (402)
T ss_dssp EEEEEEECS--SC-SSSCCEEEECSTTEEEEEEECTTC------CEEEEEEETTB
T ss_pred ceeeeeccC--CC-CCcceEEEEcCCCcEEEEeccCCC------CceEEEEcCcc
Confidence 422221011 11 111234444555677777621111 25788899874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=89.86 E-value=26 Score=38.29 Aligned_cols=189 Identities=12% Similarity=0.030 Sum_probs=87.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+ ..+.+||+.+ .+....- .. ..... .+++...++..++.|+.+ ..+.+||+.++
T Consensus 66 ~~~~l~~~~~d------g~i~vw~~~~--~~~~~~~-~~-~~~~v-~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 129 (814)
T 3mkq_A 66 RKNWIIVGSDD------FRIRVFNYNT--GEKVVDF-EA-HPDYI-RSIAVHPTKPYVLSGSDD-----LTVKLWNWENN 129 (814)
T ss_dssp GGTEEEEEETT------SEEEEEETTT--CCEEEEE-EC-CSSCE-EEEEECSSSSEEEEEETT-----SEEEEEEGGGT
T ss_pred CCCEEEEEeCC------CeEEEEECCC--CcEEEEE-ec-CCCCE-EEEEEeCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 44556666642 2388999876 3333211 11 11111 122222233455566543 35888898765
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG- 472 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 472 (625)
...-..+... ...-.+.+... ++..++.|+.+ ..+.+||+.+....+..... ...+ -.++....
T Consensus 130 ~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~--~~~~--v~~~~~~~~ 195 (814)
T 3mkq_A 130 WALEQTFEGH----EHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--QERG--VNYVDYYPL 195 (814)
T ss_dssp SEEEEEEECC----SSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECC--CTTC--CCEEEECCS
T ss_pred ceEEEEEcCC----CCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecC--CCCC--EEEEEEEEC
Confidence 1111222211 11112222332 34566666632 36888998665544443322 1111 12333332
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
++.+++.|+.+ ..+.+||+.+. ..+.... ... ..-.++....++.+++.|+.+
T Consensus 196 ~~~~~l~~~~~d---------g~i~~~d~~~~----~~~~~~~----------~~~-~~v~~~~~~~~~~~l~~~~~d-- 249 (814)
T 3mkq_A 196 PDKPYMITASDD---------LTIKIWDYQTK----SCVATLE----------GHM-SNVSFAVFHPTLPIIISGSED-- 249 (814)
T ss_dssp TTCCEEEEECTT---------SEEEEEETTTT----EEEEEEE----------CCS-SCEEEEEECSSSSEEEEEETT--
T ss_pred CCCCEEEEEeCC---------CEEEEEECCCC----cEEEEEc----------CCC-CCEEEEEEcCCCCEEEEEeCC--
Confidence 44667776653 57888998732 2232220 011 111223333356677777753
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
..+.+||+
T Consensus 250 ----g~v~vwd~ 257 (814)
T 3mkq_A 250 ----GTLKIWNS 257 (814)
T ss_dssp ----SCEEEEET
T ss_pred ----CeEEEEEC
Confidence 35777777
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=89.80 E-value=16 Score=35.69 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=32.2
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCC----EEEEcCCCCCC--CCCccceEEEE----cCCEE-EEEcCcCCCCceece
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQP----TWIEVSGGAPP--LPRSWHSSCII----EGSKL-VVSGGCTDAGVLLSD 438 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~----~W~~~~~~~~p--~~r~~~~~~~~----~~~~i-yv~GG~~~~~~~~~~ 438 (625)
..++.|+.+ ..+.+||+.+.+. .+..+...... .... .+.... .++.. ++.|+.+ ..
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~l~~~~~d------g~ 149 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF-WALKWGASNDRLLSHRLVATDVK------GT 149 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCE-EEEEEECCC----CEEEEEEETT------SC
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcE-EEEEEeeccCCCCceEEEEEeCC------Cc
Confidence 677777754 3588888876621 05555432100 1111 222233 23455 6666632 35
Q ss_pred EEEEecCC
Q 048754 439 TYLLDLTT 446 (625)
Q Consensus 439 ~~~~d~~~ 446 (625)
+.+||+.+
T Consensus 150 i~iwd~~~ 157 (397)
T 1sq9_A 150 TYIWKFHP 157 (397)
T ss_dssp EEEEEEES
T ss_pred EEEEeCCc
Confidence 77777755
|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.11 Score=45.00 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=34.2
Q ss_pred ccccccCC---CCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 192 SAQYFSGG---HSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 192 ~~~~~~~~---~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
...++|.+ ..++++|+++++++|++ ++++|..+..++++++...
T Consensus 19 ~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~ 66 (176)
T 4hia_A 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQ 66 (176)
T ss_dssp CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHH
T ss_pred cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHH
Confidence 33345666 67779999999999999 8889888888887765443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=89.67 E-value=14 Score=34.81 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=86.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.++|+.+.. .-..+. . .. ..-.+++...++..++.|+.++ .+.++|+.++
T Consensus 66 ~~~~l~s~s~d~------~i~vwd~~~~~-~~~~~~--~-h~-~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~ 129 (304)
T 2ynn_A 66 RKNWIIVGSDDF------RIRVFNYNTGE-KVVDFE--A-HP-DYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENN 129 (304)
T ss_dssp GGTEEEEEETTS------EEEEEETTTCC-EEEEEE--C-CS-SCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGT
T ss_pred CCCEEEEECCCC------EEEEEECCCCc-EEEEEe--C-CC-CcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCC
Confidence 445566666432 37888887631 112221 1 11 1112223233445666776543 5788888765
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEc--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIE--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY- 471 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~- 471 (625)
...-..+... ... -.++.+. +..+++.|+.+ ..+.++|+.+.......... . .+ ....+.+
T Consensus 130 ~~~~~~~~~h----~~~-v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~--~--~~-~v~~~~~~ 193 (304)
T 2ynn_A 130 WALEQTFEGH----EHF-VMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG--Q--ER-GVNYVDYY 193 (304)
T ss_dssp TEEEEEECCC----CSC-EEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECC--C--TT-CEEEEEEC
T ss_pred cchhhhhccc----CCc-EEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccC--C--cC-cEEEEEEE
Confidence 1111222211 111 1222332 34567777643 36788887554432322211 1 11 1112222
Q ss_pred --CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccce-EEEEecCCEEEEEecC
Q 048754 472 --GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDH-VAVSMPCGRIIIFGGS 548 (625)
Q Consensus 472 --~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~~l~v~GG~ 548 (625)
.++.+++.|+.+ ..+.++|+.+ ...+.... ...... ++....++.+++.|+.
T Consensus 194 ~~~~~~~l~s~s~D---------~~i~iWd~~~----~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~ 248 (304)
T 2ynn_A 194 PLPDKPYMITASDD---------LTIKIWDYQT----KSCVATLE------------GHMSNVSFAVFHPTLPIIISGSE 248 (304)
T ss_dssp CSTTCCEEEEEETT---------SEEEEEETTT----TEEEEEEE------------CCSSCEEEEEECSSSSEEEEEET
T ss_pred EcCCCCEEEEEcCC---------CeEEEEeCCC----CccceeeC------------CCCCCEEEEEECCCCCEEEEEcC
Confidence 233566666653 5678889873 22333320 111112 2333335667777775
Q ss_pred CCCCCCCCcEEEEeC
Q 048754 549 IAGLHSPSQLFLLDP 563 (625)
Q Consensus 549 ~~~~~~~~~v~~~d~ 563 (625)
+ ..|.++|+
T Consensus 249 D------g~i~iWd~ 257 (304)
T 2ynn_A 249 D------GTLKIWNS 257 (304)
T ss_dssp T------SCEEEEET
T ss_pred C------CeEEEEEC
Confidence 3 46788888
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=22 Score=37.13 Aligned_cols=191 Identities=16% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECC-
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLD- 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~- 392 (625)
++.+||.... .+.++++|..+.. .-..+. ....-|..... +++++|+.+. .+.+.+||+.
T Consensus 166 ~~~~~V~~~~------~~~V~viD~~t~~-v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~ 227 (567)
T 1qks_A 166 ENLFSVTLRD------AGQIALIDGSTYE-IKTVLD-----TGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWM 227 (567)
T ss_dssp GGEEEEEETT------TTEEEEEETTTCC-EEEEEE-----CSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred CceEEEEeCC------CCeEEEEECCCCe-EEEEEe-----CCCCccceEECCCCCEEEEEcC------CCeEEEEECCC
Confidence 4567776643 2348999988731 122232 11122333332 4667887653 2469999995
Q ss_pred -CCCCEEEEcCCCCCCCCCccceEEE----EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCC--------
Q 048754 393 -AKQPTWIEVSGGAPPLPRSWHSSCI----IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWS-------- 459 (625)
Q Consensus 393 -t~~~~W~~~~~~~~p~~r~~~~~~~----~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~-------- 459 (625)
+.+. -..++.+ ..++ +.+.. -+++.+|+..- ..+.+.++|..+.+... .++..+.
T Consensus 228 ~t~~~-v~~i~~G--~~P~--~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~~~-~i~~~~~~~~~~~~~ 295 (567)
T 1qks_A 228 KEPTT-VAEIKIG--SEAR--SIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYH 295 (567)
T ss_dssp SSCCE-EEEEECC--SEEE--EEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCEEE-EEECCEECTTTCCEE
T ss_pred CCCcE-eEEEecC--CCCc--eeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcEEE-EEecccccccccccc
Confidence 5522 2344433 2222 22322 25667777532 23577888965533211 2222111
Q ss_pred CCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecC
Q 048754 460 PPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPC 539 (625)
Q Consensus 460 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 539 (625)
|.+|...-.....+..+++.-. ....++++|.. ......+... +..+..|......+
T Consensus 296 p~~rva~i~~s~~~~~~vv~~~---------~~g~v~~vd~~--~~~~~~v~~i------------~~~~~~~d~~~~pd 352 (567)
T 1qks_A 296 PEPRVAAILASHYRPEFIVNVK---------ETGKILLVDYT--DLNNLKTTEI------------SAERFLHDGGLDGS 352 (567)
T ss_dssp SCCCEEEEEECSSSSEEEEEET---------TTTEEEEEETT--CSSEEEEEEE------------ECCSSEEEEEECTT
T ss_pred CCCceEEEEEcCCCCEEEEEec---------CCCeEEEEecC--CCccceeeee------------eccccccCceECCC
Confidence 2233222111112223333211 13788899987 3344444433 33444454444444
Q ss_pred CE-EEEEecCCCCCCCCCcEEEEeCC
Q 048754 540 GR-IIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 540 ~~-l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++ +|+.... .+.|.++|+.
T Consensus 353 gr~~~va~~~------sn~V~ViD~~ 372 (567)
T 1qks_A 353 HRYFITAANA------RNKLVVIDTK 372 (567)
T ss_dssp SCEEEEEEGG------GTEEEEEETT
T ss_pred CCEEEEEeCC------CCeEEEEECC
Confidence 54 4444322 5689999994
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=89.44 E-value=23 Score=37.17 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCC-CCC---ccceEEEEcCCEEEEEcCcCCCCceeceEEE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPP-LPR---SWHSSCIIEGSKLVVSGGCTDAGVLLSDTYL 441 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p-~~r---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 441 (625)
+.++.+|+.+.. +.++.+|..|++..|+.-...... .+. ...+. .+.++++|+... ...++.
T Consensus 66 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~-a~~~~~v~~~t~-------dg~l~A 131 (582)
T 1flg_A 66 VSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGA-AIYGDKVFFGTL-------DASVVA 131 (582)
T ss_dssp EETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCC-EEETTEEEEEET-------TTEEEE
T ss_pred EECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCcc-EEECCEEEEEeC-------CCEEEE
Confidence 447789988763 239999999998899865432110 000 01122 334668887421 146899
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECC---c-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGR---T-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ 509 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~---~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~ 509 (625)
+|.++.+..|+.-............+.++.++ + .++++|....+.. ....++.||..+....|+.
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~---~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFG---VVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGC---CBCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccC---CCCEEEEEECCCCCEEeec
Confidence 99999999998643210000011122233332 1 1444443211100 1367899999887778964
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.41 E-value=3.3 Score=39.85 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=68.7
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cC---CEEEEEccCCCCCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NG---SWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
..+++.|+... .-..+.+||+.+ .+...+.... . ...-.++.+ .+ +.+++.|+.+ ..+.+||.
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~--~~~~~~~~~~--~-~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 97 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQH--GDLKLLREIE--K-AKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNL 97 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECS--SSEEEEEEEE--E-SSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECT
T ss_pred ceEEEecCccC---CCcEEEEEeCCC--Ccccceeeec--c-cCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeC
Confidence 36666665411 012378888876 3443221111 0 111122223 22 3566677654 35888998
Q ss_pred CCCCCEEEEcCCCCCCCCCccceEEE------EcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCc
Q 048754 392 DAKQPTWIEVSGGAPPLPRSWHSSCI------IEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLG 465 (625)
Q Consensus 392 ~t~~~~W~~~~~~~~p~~r~~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~ 465 (625)
.+.+.....+... . ... .+... ..++..++.|+.+ ..+.+||+.+.......+........+.-
T Consensus 98 ~~~~~~~~~~~~~--~-~~v-~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 98 EAPEMPVYSVKGH--K-EII-NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCSSCSEEECCC--S-SCE-EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCCccEEEEEec--c-cce-EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 8763112222211 0 111 11111 1233456666532 36788898665423444432111111121
Q ss_pred ceEE----EECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 466 HSLS----VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 466 ~~~~----~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.+++ ...++.+++.|+.+ ..+.+||+.+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~ 199 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDN---------GDIKLFDLRN 199 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETT---------SEEEEEETTT
T ss_pred EEEEEEeccCCCCCEEEEEccC---------CeEEEEECcc
Confidence 2222 11344666666542 5788899884
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=89.35 E-value=17 Score=35.40 Aligned_cols=208 Identities=9% Similarity=-0.040 Sum_probs=87.6
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPS 462 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~ 462 (625)
..++++|+.++ .-..+... .....+.. ... +++.+++............++.+|+++.. ...+... ...
T Consensus 168 ~~l~~~d~~~g--~~~~l~~~---~~~~~~~~-~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~--~~~ 237 (388)
T 3pe7_A 168 CRLMRVDLKTG--ESTVILQE---NQWLGHPI-YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN--MRKVKTH--AEG 237 (388)
T ss_dssp EEEEEEETTTC--CEEEEEEE---SSCEEEEE-EETTEEEEEEEEECSCTTTSSCSEEEEETTSCC--CEESCCC--CTT
T ss_pred ceEEEEECCCC--ceEEeecC---CccccccE-ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc--eEEeeeC--CCC
Confidence 67999999888 55555421 12222222 223 33433332222111224589999976544 5555431 111
Q ss_pred CCcceEEEECCcE-EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCE
Q 048754 463 RLGHSLSVYGRTK-VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGR 541 (625)
Q Consensus 463 r~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~ 541 (625)
..........+++ |+..... .... ...++++|+.+ .+-+.+...+- .. .....+.. .++.- +++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~-~~~~----~~~l~~~d~~~--g~~~~l~~~~~--~~-~~~~~~~~----~~~sp-dg~ 302 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYL-KGSP----DRFIYSADPET--LENRQLTSMPA--CS-HLMSNYDG----SLMVG-DGS 302 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEE-TTCC----CEEEEEECTTT--CCEEEEEEECC--EE-EEEECTTS----SEEEE-EEC
T ss_pred cccccceECCCCCEEEEEecC-CCCC----cceEEEEecCC--CceEEEEcCCC--ce-eeeecCCC----CeEcc-CCC
Confidence 1111222333333 4333221 1110 12499999984 34455544310 00 00000000 11222 333
Q ss_pred EEEEecCCC---CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC------CCCcceEEEECCcEEEEEcCcCCCCCccCce
Q 048754 542 IIIFGGSIA---GLHSPSQLFLLDPSEEKPSWRILNVPGQPPK------FAWGHSTCVVGGTRVLVLGGHTGEEWVLNEL 612 (625)
Q Consensus 542 l~v~GG~~~---~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~------~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~ 612 (625)
.+++.-... .......|+++|+ .+..-..+........ ...........+++.+++..... + ...+
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g--~~~l 377 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNM--KNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-G--KPAL 377 (388)
T ss_dssp CC------------CCCCEEEEEET--TTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-S--SCEE
T ss_pred cceeEeeeccccccCCCCEEEEEec--cCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-C--ceeE
Confidence 222211100 0122568999999 5556655543221000 00112333445555555544322 2 3569
Q ss_pred EEEEccCCC
Q 048754 613 HELCLASKQ 621 (625)
Q Consensus 613 ~~~~~~~~~ 621 (625)
|++++.+..
T Consensus 378 ~~~~l~~~~ 386 (388)
T 3pe7_A 378 YLATLPESV 386 (388)
T ss_dssp EEEECCGGG
T ss_pred EEEECChhc
Confidence 999987653
|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=0.11 Score=42.51 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=25.4
Q ss_pred CCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 201 SPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 201 ~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.++|+|+++++++||+ +|++|..+..+.+++
T Consensus 23 ~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~ 54 (132)
T 2pr5_A 23 PIVYVNQGFVQMTGYETEEILGKNCRFLQGKH 54 (132)
T ss_dssp CEEEECHHHHHHHSCCHHHHTTSCGGGGCCTT
T ss_pred cEEEECHHHHHHhCcCHHHHcCCChhhhCCCC
Confidence 6679999999999999 888887776555554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.28 E-value=28 Score=37.98 Aligned_cols=213 Identities=8% Similarity=-0.053 Sum_probs=102.7
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~ 413 (625)
+++|+..+ ..+.....+.......-.+++...++.|++ |.. ..-+++||+.++ ++..+.....+ ...-.
T Consensus 385 l~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~--~~~~~~~~~~~-~~~v~ 453 (781)
T 3v9f_A 385 INVFENGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----LGNISYYNTRLK--KFQIIELEKNE-LLDVR 453 (781)
T ss_dssp EEEEETTE--EEEECC-----CCCSBEEEEEECTTSCEEE-EET-----TEEEEEECSSSC--EEEECCSTTTC-CCCEE
T ss_pred EEEEECCC--CeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----cCCEEEEcCCCC--cEEEeccCCCC-CCeEE
Confidence 78888765 345433111111111123333333456766 322 135899999888 88877532111 11112
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCC-CCC-CCCcceEEEECCcEEEEEcCCcCCCCcccc
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSW-SPP-SRLGHSLSVYGRTKVLMFGGLAKSGHLRLR 491 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~-~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~ 491 (625)
+.+...++.++|... .-+++||+.+.. |..+.... .+. ...-.+++...++.|++-..
T Consensus 454 ~i~~d~~g~lwigt~--------~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~---------- 513 (781)
T 3v9f_A 454 VFYEDKNKKIWIGTH--------AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF---------- 513 (781)
T ss_dssp EEEECTTSEEEEEET--------TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEEEES----------
T ss_pred EEEECCCCCEEEEEC--------CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEEEEc----------
Confidence 222233457777321 358899987765 55443211 111 11222333334457776421
Q ss_pred cCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcE-EEEeCCCCCCCe
Q 048754 492 SGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQL-FLLDPSEEKPSW 570 (625)
Q Consensus 492 ~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v-~~~d~~~~~~~W 570 (625)
...+++||+. +.+++..... ...+... -.+.+.-.++.|++... .-+ ++||+ .+.++
T Consensus 514 ~~Gl~~~~~~--~~~~~~~~~~---------~~l~~~~-i~~i~~d~~g~lWi~T~--------~Glv~~~d~--~~~~~ 571 (781)
T 3v9f_A 514 GGGVGIYTPD--MQLVRKFNQY---------EGFCSNT-INQIYRSSKGQMWLATG--------EGLVCFPSA--RNFDY 571 (781)
T ss_dssp SSCEEEECTT--CCEEEEECTT---------TTCSCSC-EEEEEECTTSCEEEEET--------TEEEEESCT--TTCCC
T ss_pred CCCEEEEeCC--CCeEEEccCC---------CCCCCCe-eEEEEECCCCCEEEEEC--------CCceEEECC--CCCcE
Confidence 1457889887 4466655422 0112111 12222223567777522 245 88888 56677
Q ss_pred EEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 571 RILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 571 ~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
........+|.... .+++...++.|++.+
T Consensus 572 ~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 572 QVFQRKEGLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp EEECGGGTCSCCCC-CEEEECSSSCEEEEC
T ss_pred EEccccCCCCCceE-EEEEECCCCCEEEEc
Confidence 77654333443332 344444455666544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=89.25 E-value=20 Score=38.11 Aligned_cols=198 Identities=16% Similarity=0.030 Sum_probs=91.8
Q ss_pred cccEEEEECCC------CCCEEEEcC-CCCCCCCCccceEEEEcCCEEEEEcCcCCCCc--eeceEEEEecC-CCC-Cce
Q 048754 383 LNDVFVLDLDA------KQPTWIEVS-GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGV--LLSDTYLLDLT-TDK-PMW 451 (625)
Q Consensus 383 ~~~~~~~d~~t------~~~~W~~~~-~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~~d~~-~~~-~~W 451 (625)
...++++|..+ . ....+. .. + .........-+++.|++ ........ ....++++|++ +.. ...
T Consensus 160 ~~~i~~~~~~~~~~~~~~--~~~~l~~~~--~-~~~~~~~~SpDG~~la~-~~~~~~~~~~~~~~i~~~d~~~~g~~~~~ 233 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRS--AVRELSDDA--H-RFVTGPRLSPDGRQAVW-LAWDHPRMPWEGTELKTARVTEDGRFADT 233 (662)
T ss_dssp EEEEEEEETTSTTTTCGG--GSEESSCSC--S-SEECCCEECTTSSEEEE-EEECTTCCTTTCEEEEEEEECTTSCEEEE
T ss_pred eeEEEEEECCCCccccCC--ceeEEEecC--C-CcccCceECCCCCEEEE-EECCCCCCCCCCcEEEEEEECCCCccccc
Confidence 46899999987 5 455555 32 1 11111122224444444 33222111 12479999986 342 024
Q ss_pred EEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc-
Q 048754 452 REIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL- 530 (625)
Q Consensus 452 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~- 530 (625)
..+... ............++++|+.+..+ + ...+|.+|+. +.++..+...... ...|.-..
T Consensus 234 ~~l~~~---~~~~~~~~~~spdg~l~~~~~~~--~-----~~~l~~~~~~--~~~~~~l~~~~~~------~~~p~w~~~ 295 (662)
T 3azo_A 234 RTLLGG---PEEAIAQAEWAPDGSLIVATDRT--G-----WWNLHRVDPA--TGAATQLCRREEE------FAGPLWTPG 295 (662)
T ss_dssp EEEEEE---TTBCEEEEEECTTSCEEEEECTT--S-----SCEEEEECTT--TCCEEESSCCSSB------SSCCCCSTT
T ss_pred EEeCCC---CCceEcceEECCCCeEEEEECCC--C-----CeEEEEEECC--CCceeeccccccc------ccCcccccc
Confidence 444321 01112233334455677665442 1 2478999986 4467766443100 00011110
Q ss_pred ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccC
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLN 610 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~ 610 (625)
........++++++.+.. ....+|.+|+ .+.....+.. +... ..+.....++.+++..+.... ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~--~~~~~~~l~~----~~~~-~~~~~s~~~~~~~~~~~~~~~---~~ 360 (662)
T 3azo_A 296 MRWFAPLANGLIAVVHGK-----GAAVLGILDP--ESGELVDAAG----PWTE-WAATLTVSGTRAVGVAASPRT---AY 360 (662)
T ss_dssp CCSEEECTTSCEEEEEBS-----SSCEEEEEET--TTTEEEECCS----SCCE-EEEEEEEETTEEEEEEEETTE---EE
T ss_pred CceEeEeCCCEEEEEEEc-----CccEEEEEEC--CCCcEEEecC----CCCe-EEEEEecCCCEEEEEEcCCCC---CC
Confidence 112222336777766543 2558999998 4556665532 1111 112202334456555443221 35
Q ss_pred ceEEEEccC
Q 048754 611 ELHELCLAS 619 (625)
Q Consensus 611 d~~~~~~~~ 619 (625)
++|.+++.+
T Consensus 361 ~i~~~d~~~ 369 (662)
T 3azo_A 361 EVVELDTVT 369 (662)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECCC
Confidence 677776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=89.25 E-value=18 Score=35.60 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=65.7
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH 413 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~ 413 (625)
+++||+.+ .+...+.... ....-.+++...++..++.|+.+ ..+.+||+.+.+ .-..+.. .... -
T Consensus 115 v~lw~~~~--~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~---~~~~--v 179 (401)
T 4aez_A 115 VYVWNADS--GSVSALAETD--ESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQT-KLRTMAG---HQAR--V 179 (401)
T ss_dssp EEEEETTT--CCEEEEEECC--TTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCC-EEEEECC---CSSC--E
T ss_pred EEEeeCCC--CcEeEeeecC--CCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCe-EEEEecC---CCCc--e
Confidence 88888876 3444332111 11111222222344566666643 358899988772 1223322 1111 2
Q ss_pred eEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccC
Q 048754 414 SSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSG 493 (625)
Q Consensus 414 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 493 (625)
.++.+++ .+++.|+.+ ..+.++|+......-..+.. ...+ -.++....++.+++.|+.+ .
T Consensus 180 ~~~~~~~-~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~~--v~~~~~~~~~~~l~s~~~d---------~ 239 (401)
T 4aez_A 180 GCLSWNR-HVLSSGSRS------GAIHHHDVRIANHQIGTLQG--HSSE--VCGLAWRSDGLQLASGGND---------N 239 (401)
T ss_dssp EEEEEET-TEEEEEETT------SEEEEEETTSSSCEEEEEEC--CSSC--EEEEEECTTSSEEEEEETT---------S
T ss_pred EEEEECC-CEEEEEcCC------CCEEEEecccCcceeeEEcC--CCCC--eeEEEEcCCCCEEEEEeCC---------C
Confidence 2334455 466666532 36788897643322222221 1111 1233333344677777753 5
Q ss_pred ceEEEEcCC
Q 048754 494 ESYTIDLGD 502 (625)
Q Consensus 494 ~~~~~d~~~ 502 (625)
.+.+||+.+
T Consensus 240 ~v~iwd~~~ 248 (401)
T 4aez_A 240 VVQIWDARS 248 (401)
T ss_dssp CEEEEETTC
T ss_pred eEEEccCCC
Confidence 788899873
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=29 Score=38.01 Aligned_cols=154 Identities=8% Similarity=0.013 Sum_probs=78.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCC---ccceeEEEEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPG---RWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~---r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
++.|++... +-+++||..+ .+|..+.....+.. ..-.++....++.|++... +-+++||+
T Consensus 462 ~g~lwigt~--------~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~Gl~~~~~ 524 (795)
T 4a2l_A 462 EGNLWLGTL--------SALVRFNPEQ--RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------EGLSVFKQ 524 (795)
T ss_dssp SSCEEEEES--------SCEEEEETTT--TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------SCEEEEEE
T ss_pred CCCEEEEec--------CceeEEeCCC--CeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------CceEEEeC
Confidence 456766542 1289999877 57877642211111 1112333334456777543 23899999
Q ss_pred CCCCCEEEEcCCC-CCCCCCccceEE-EE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCCCCCcce
Q 048754 392 DAKQPTWIEVSGG-APPLPRSWHSSC-II-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPPSRLGHS 467 (625)
Q Consensus 392 ~t~~~~W~~~~~~-~~p~~r~~~~~~-~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~~~ 467 (625)
.+. ++ .+... ..+........+ .. .++.+++... .-+++||+.+.. +..... .++|... -.+
T Consensus 525 ~~~--~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~--~~~~~~~~gl~~~~-i~~ 590 (795)
T 4a2l_A 525 EGL--DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQ--IKRYNTTNGLPNNV-VYG 590 (795)
T ss_dssp ETT--EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTE--EEEECGGGTCSCSC-EEE
T ss_pred CCC--eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCc--EEEeCCCCCCchhh-eEE
Confidence 888 77 44311 001111111122 22 3456777321 147889976654 766543 2233322 233
Q ss_pred EEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeee
Q 048754 468 LSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 468 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
++.-.++.|++.+. +.+.+||++ +.++.....
T Consensus 591 i~~d~~g~lWi~t~-----------~Gl~~~~~~--~~~~~~~~~ 622 (795)
T 4a2l_A 591 ILEDSFGRLWLSTN-----------RGISCFNPE--TEKFRNFTE 622 (795)
T ss_dssp EEECTTSCEEEEET-----------TEEEEEETT--TTEEEEECG
T ss_pred EEECCCCCEEEEcC-----------CceEEEcCC--CCcEEEcCC
Confidence 33334557887642 567889988 446665543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=89.19 E-value=14 Score=34.26 Aligned_cols=218 Identities=9% Similarity=-0.054 Sum_probs=104.0
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+.... .+.+++||... ++..+..+. ....-++++...++.+|+..... +.+++||+. +
T Consensus 72 ~g~l~v~~~~------~~~v~~~d~~g---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g 134 (300)
T 2qc5_A 72 LGDIWFTENG------ANKIGKLSKKG---GFTEYPLPQ--PDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTAD-G 134 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTTS---CEEEEECSS--TTCCEEEEEECSTTCEEEEETTT-----TEEEEECTT-S
T ss_pred CCCEEEEecC------CCeEEEECCCC---CeEEecCCC--CCCCCccceECCCCCEEEEccCC-----CeEEEECCC-C
Confidence 4678876532 12388888763 455442221 11122333433355688775321 358889987 5
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++++|+.... ...+++||+ +.+ ...+... .....-.+++.-.++
T Consensus 135 --~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~--~~~~~~~--~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 135 --TIYEYDLP--NKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGK--LEEYPLP--TNAAAPVGITSGNDG 199 (300)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --CEEEccCC--CCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCc--EEEeeCC--CCCCCcceEEECCCC
Confidence 34433211 01112223333344568875421 136888987 433 5544321 111112233333355
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.||+.... ...+++||+. ..+...... .........+.-.+++||+....
T Consensus 200 ~l~v~~~~---------~~~i~~~~~~---g~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~------ 249 (300)
T 2qc5_A 200 ALWFVEIM---------GNKIGRITTT---GEISEYDIP------------TPNARPHAITAGKNSEIWFTEWG------ 249 (300)
T ss_dssp SEEEEETT---------TTEEEEECTT---CCEEEEECS------------STTCCEEEEEECSTTCEEEEETT------
T ss_pred CEEEEccC---------CCEEEEEcCC---CcEEEEECC------------CCCCCceEEEECCCCCEEEeccC------
Confidence 78876432 2568888874 233333211 01111123333336678887532
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+.+||+ +.+.......... ..-++++...++.|++.+
T Consensus 250 ~~~i~~~~~---~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 250 ANQIGRITN---DNTIQEYQLQTEN---AEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp TTEEEEECT---TSCEEEEECCSTT---CCCCCEEECTTSCEEEEC
T ss_pred CCeEEEECC---CCcEEEEECCccC---CccceeEeCCCCCEEEEc
Confidence 457899998 3455554322111 112344555556766654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=89.02 E-value=14 Score=34.16 Aligned_cols=218 Identities=7% Similarity=-0.057 Sum_probs=103.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+|+.... .+.+++||... .+.....+. ....-++++.-.++.+|+..... ..+++||+. +
T Consensus 25 ~g~l~v~~~~------~~~v~~~d~~~---~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g 87 (299)
T 2z2n_A 25 KGKVWITQHK------ANMISCINLDG---KITEYPLPT--PDAKVMCLTISSDGEVWFTENAA-----NKIGRITKK-G 87 (299)
T ss_dssp TSCEEEEETT------TTEEEEECTTC---CEEEEECSS--TTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-S
T ss_pred CCCEEEEecC------CCcEEEEcCCC---CeEEecCCc--ccCceeeEEECCCCCEEEeCCCC-----CeEEEECCC-C
Confidence 4577776432 12388888762 455442111 11122333333455688875421 358889886 3
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+...+... .....-+..+...++.+|+.... ...++++|+ +.. ...+... .....-++++...++
T Consensus 88 --~~~~~~~~--~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~--~~~~~~~--~~~~~~~~i~~~~~g 152 (299)
T 2z2n_A 88 --IIKEYTLP--NPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGK--IREYELP--NKGSYPSFITLGSDN 152 (299)
T ss_dssp --CEEEEECS--STTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCC--EEEEECS--STTCCEEEEEECTTS
T ss_pred --cEEEEeCC--CcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCC--EEEecCC--CCCCCCceEEEcCCC
Confidence 34443311 01112233333345578886432 136888887 433 4443221 111222344444455
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+|+.... ...++++|+. . +...+... .........+...+++||+....
T Consensus 153 ~l~v~~~~---------~~~i~~~~~~-g--~~~~~~~~------------~~~~~~~~i~~~~~g~l~v~~~~------ 202 (299)
T 2z2n_A 153 ALWFTENQ---------NNAIGRITES-G--DITEFKIP------------TPASGPVGITKGNDDALWFVEII------ 202 (299)
T ss_dssp CEEEEETT---------TTEEEEECTT-C--CEEEEECS------------STTCCEEEEEECTTSSEEEEETT------
T ss_pred CEEEEeCC---------CCEEEEEcCC-C--cEEEeeCC------------CCCCcceeEEECCCCCEEEEccC------
Confidence 78876421 2578889883 2 34333211 01111123333335778887532
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
.+.+++||+ +..+........ ...-.+++...++.+|+..
T Consensus 203 ~~~i~~~~~---~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 203 GNKIGRITT---SGEITEFKIPTP---NARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp TTEEEEECT---TCCEEEEECSST---TCCEEEEEECSTTCEEEEE
T ss_pred CceEEEECC---CCcEEEEECCCC---CCCceeEEECCCCCEEEec
Confidence 457899998 345555432111 1111233344455666653
|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
Probab=88.93 E-value=0.06 Score=43.55 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.5
Q ss_pred cccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
..+.....++|.+..++++|.++++++|++ ++++|.++++.+.|
T Consensus 24 d~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~ 68 (125)
T 1nwz_A 24 DGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAP 68 (125)
T ss_dssp TTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCG
T ss_pred hccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccc
Confidence 333444445688888999999999999999 99999999886665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=88.91 E-value=4.1 Score=39.79 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=68.0
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++.+++.|+.+ ..+.+||+.++ .|..+.......... .+.....++.+++.|+.+ ..+.+||+.+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~--~~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~ 87 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGN--GWKHARTFSDHDKIV-TCVDWAPKSNRIVTCSQD------RNAYVYEKRPD 87 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETT--EEEECCCBCCCSSCE-EEEEECTTTCCEEEEETT------SSEEEC-----
T ss_pred CCCEEEEecCC-----CEEEEEEccCC--ceEEEEEEecCCceE-EEEEEeCCCCEEEEEeCC------CeEEEEEcCCC
Confidence 34466666643 35778888877 777765432111111 122222344566666632 25777887553
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
. .|..+... ......-.++....++.+++.|+.+ ..+.++|+.+. ..|..+.... .+.
T Consensus 88 ~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~-~~~~~~~~~~----------~~h 145 (377)
T 3dwl_C 88 G-TWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGA---------RVISVCYFEQE-NDWWVSKHLK----------RPL 145 (377)
T ss_dssp --CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESS---------SCEEECCC------CCCCEEEC----------SSC
T ss_pred C-ceeeeeEe-cccCCceEEEEECCCCCEEEEEecC---------CeEEEEEECCc-ccceeeeEee----------ccc
Confidence 3 12211110 0111111222223344566666653 46777887742 2344343331 011
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
...-.++....++++++.|+.+ ..+.+||+
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~ 175 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCAD------RKAYVLSA 175 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESS------SCEEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCC------CEEEEEEE
Confidence 1112233333366778887753 45777776
|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=0.071 Score=45.42 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.9
Q ss_pred ccccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 192 SAQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 192 ~~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
...++|. +..++++|+++++++|++ ++++|.++..++++++..
T Consensus 47 ~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~ 93 (166)
T 3ue6_A 47 NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDP 93 (166)
T ss_dssp CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCH
Confidence 3334466 567779999999999999 888888887777765533
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.53 E-value=0.81 Score=45.27 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=48.0
Q ss_pred eeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEE
Q 048754 361 HTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTY 440 (625)
Q Consensus 361 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 440 (625)
++..++.++.||+.+. + ..++.+|..+++..|+.-. . +. . .+. .+.++.+|+.++.+ ..++
T Consensus 2 ~ssP~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~-~--~~-~--s~p-~~~~g~~~v~~s~d------g~l~ 62 (369)
T 2hz6_A 2 SSTVTLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE-D--PV-L--QVP-THVEEPAFLPDPND------GSLY 62 (369)
T ss_dssp ------CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC-C--CS-C--CCC------CCEEECTTT------CCEE
T ss_pred CCCCeeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC-C--Cc-e--ecc-eEcCCCEEEEeCCC------CEEE
Confidence 3444556777776543 1 3699999999988898543 2 11 1 112 22344677765422 3588
Q ss_pred EEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 441 LLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 441 ~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
.+|.++.+..|..-.. .+.. ...+.++..++.+| +|+. ...++.+|+.+....|+.-
T Consensus 63 a~d~~tG~~~w~~~~~--~~~~-~~~sp~~~~~~~v~-~g~~---------dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 63 TLGSKNNEGLTKLPFT--IPEL-VQASPCRSSDGILY-MGKK---------QDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp EC-----CCSEECSCC--HHHH-HTTCSCC-----CC-CCEE---------EEEEEEECCC---------
T ss_pred EEECCCCceeeeeecc--Cccc-cccCceEecCCEEE-EEeC---------CCEEEEEECCCCcEEEEec
Confidence 8998777766764211 1100 01111121232444 3332 2568889988766678643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.50 E-value=17 Score=34.49 Aligned_cols=220 Identities=12% Similarity=0.050 Sum_probs=104.2
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQ 395 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~ 395 (625)
+.+++.|+.+. .+.++|+.+. ..-..+. ..+.. -.+++...+++.++.|+.. ..+.+||..+.+
T Consensus 92 ~~~l~s~s~D~------~i~lWd~~~~-~~~~~~~--~~~~~--~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~ 155 (321)
T 3ow8_A 92 LPIAASSSLDA------HIRLWDLENG-KQIKSID--AGPVD--AWTLAFSPDSQYLATGTHV-----GKVNIFGVESGK 155 (321)
T ss_dssp SSEEEEEETTS------EEEEEETTTT-EEEEEEE--CCTTC--CCCEEECTTSSEEEEECTT-----SEEEEEETTTCS
T ss_pred CCEEEEEeCCC------cEEEEECCCC-CEEEEEe--CCCcc--EEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCc
Confidence 34555565432 3788888763 1112221 11111 1223333344566777643 358889988773
Q ss_pred CEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcE
Q 048754 396 PTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTK 475 (625)
Q Consensus 396 ~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~ 475 (625)
..+..... ...-.+.+...++++++.|+.+ ..+.+||+.+... -..+.. ...+. .+++...++.
T Consensus 156 ~~~~~~~~-----~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~-~~~~~~--h~~~v--~~l~~spd~~ 219 (321)
T 3ow8_A 156 KEYSLDTR-----GKFILSIAYSPDGKYLASGAID------GIINIFDIATGKL-LHTLEG--HAMPI--RSLTFSPDSQ 219 (321)
T ss_dssp EEEEEECS-----SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEE-EEEECC--CSSCC--CEEEECTTSC
T ss_pred eeEEecCC-----CceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcE-EEEEcc--cCCce--eEEEEcCCCC
Confidence 33322111 1111222233445666666643 3578889765431 122221 11111 2333444557
Q ss_pred EEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEE-ecCCEEEEEecCCCCCCC
Q 048754 476 VLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVS-MPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 476 l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG~~~~~~~ 554 (625)
+++.|+.+ ..+.+||+.+ .. .+... ........++. ..++..++.|+.+
T Consensus 220 ~l~s~s~d---------g~i~iwd~~~--~~--~~~~~------------~~h~~~v~~~~~sp~~~~l~s~s~D----- 269 (321)
T 3ow8_A 220 LLVTASDD---------GYIKIYDVQH--AN--LAGTL------------SGHASWVLNVAFCPDDTHFVSSSSD----- 269 (321)
T ss_dssp EEEEECTT---------SCEEEEETTT--CC--EEEEE------------CCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEcCC---------CeEEEEECCC--cc--eeEEE------------cCCCCceEEEEECCCCCEEEEEeCC-----
Confidence 77777753 5688899873 22 22222 11111122233 3366777777753
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.++|+ .+.+ .+.... .....-.++...+++..++.||.++
T Consensus 270 -~~v~iwd~--~~~~--~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 270 -KSVKVWDV--GTRT--CVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp -SCEEEEET--TTTE--EEEEEC--CCSSCEEEEEECTTSSEEEEEETTC
T ss_pred -CcEEEEeC--CCCE--EEEEEc--CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 46888998 3332 222110 1111112334445667778887655
|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=88.48 E-value=0.077 Score=41.50 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=32.2
Q ss_pred cccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 191 QSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
....++|.+..++++|+++++++|++ ++++|..+.+++ |++
T Consensus 14 ~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~ 55 (114)
T 3luq_A 14 AALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEI 55 (114)
T ss_dssp SEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTC
T ss_pred ceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-Ccc
Confidence 33445577788889999999999999 888888887777 443
|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.24 Score=41.84 Aligned_cols=47 Identities=4% Similarity=0.003 Sum_probs=37.1
Q ss_pred hccccccccccccCCCCCCccccc---ccccccCchhHHHHhhhcccCch
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQD---ICGILQLSDEVLAHNILSRLTPR 231 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~---~~~~~g~~~e~~~~~~~~~~~~~ 231 (625)
+...+.....++|.++.++|+|++ +++++|.+++++|.++.++.++.
T Consensus 24 IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g~~~~~iGr~v~~~~~~~ 73 (151)
T 2qkp_A 24 ILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPK 73 (151)
T ss_dssp HHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSSCHH
T ss_pred HHHhCCCceEEEcCCCeEEEEeCCCchhhhhcCCCHHHcCCCHHHhCCHH
Confidence 334445555567888889999999 99999966889999998877654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=88.39 E-value=16 Score=34.62 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=37.3
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEE-cCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEec
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIE-VSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDL 444 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~ 444 (625)
.++++|+.++.+ +.++++|+.++ +... ++. +....-+..+.. +++.+|+.+.. ...+++||+
T Consensus 9 ~~~~~~v~~~~~-----~~v~~~d~~~~--~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~ 72 (349)
T 1jmx_B 9 AGHEYMIVTNYP-----NNLHVVDVASD--TVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDL 72 (349)
T ss_dssp TTCEEEEEEETT-----TEEEEEETTTT--EEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEET
T ss_pred CCCEEEEEeCCC-----CeEEEEECCCC--cEEEEEec---CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeC
Confidence 356788877643 46999999887 4432 221 110011233333 44467776532 146899998
Q ss_pred CCCC
Q 048754 445 TTDK 448 (625)
Q Consensus 445 ~~~~ 448 (625)
.+.+
T Consensus 73 ~t~~ 76 (349)
T 1jmx_B 73 DTCK 76 (349)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=88.36 E-value=30 Score=37.13 Aligned_cols=259 Identities=12% Similarity=0.020 Sum_probs=114.9
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCC-CC-CccceeEEE-EcCCEEEEEccCCCCCccccEEEEE
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS-PP-GRWGHTLSS-LNGSWLVVFGGCGRQGLLNDVFVLD 390 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~-p~-~r~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d 390 (625)
.|+++|.+--.. ......+|+.+... ..|+.+...+. .. ......... ..+++.++|.-.....-...++++|
T Consensus 78 dG~~~~~~~~~~--~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 78 RNGRFFYVRTHK--DKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp ETTEEEEEEECT--TCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred ECCEEEEEEEcC--CCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 345555543211 12234578877654 46776632111 00 111111222 2333343433221111234799999
Q ss_pred CCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCC-------ceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 391 LDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAG-------VLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 391 ~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
+.++ .... .. ..+.... ...+...+++.++++.....+ .....++.+++.+....-..+... ...+.
T Consensus 154 l~tg--~~~~-~~-~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~ 227 (695)
T 2bkl_A 154 VDSG--EWSK-VD-VIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPT 227 (695)
T ss_dssp TTTC--CBCS-SC-CBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTT
T ss_pred CCCC--CCcC-Cc-ccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCE
Confidence 9988 4320 11 1111211 223333444555555433221 134569999986654211222211 11122
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII 543 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~ 543 (625)
...+...-.+++.+++....... ..++|.++.. +..|..+... . ... ...+.. ++.+|
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~-----~~~l~~~~~~--~~~~~~l~~~------------~-~~~-~~~~~~-~g~l~ 285 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWS-----ENDVYWKRPG--EKDFRLLVKG------------V-GAK-YEVHAW-KDRFY 285 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTT-----EEEEEEECTT--CSSCEEEEEC------------S-SCC-EEEEEE-TTEEE
T ss_pred EEEEEEECCCCCEEEEEEeCCCC-----ceEEEEEcCC--CCceEEeecC------------C-Cce-EEEEec-CCcEE
Confidence 22334344444444443332211 3588888765 4477777643 1 111 122223 55555
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCC---eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPS---WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCL 617 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~---W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~ 617 (625)
+.... ......|+.+|+. +.. |..+.... +.. .-.+.... ++.+++....++ ...+|++++
T Consensus 286 ~~s~~---~~~~~~l~~~d~~--~~~~~~~~~l~~~~--~~~-~l~~~~~~-~~~lv~~~~~dg----~~~l~~~~~ 349 (695)
T 2bkl_A 286 VLTDE---GAPRQRVFEVDPA--KPARASWKEIVPED--SSA-SLLSVSIV-GGHLSLEYLKDA----TSEVRVATL 349 (695)
T ss_dssp EEECT---TCTTCEEEEEBTT--BCSGGGCEEEECCC--SSC-EEEEEEEE-TTEEEEEEEETT----EEEEEEEET
T ss_pred EEECC---CCCCCEEEEEeCC--CCCccCCeEEecCC--CCC-eEEEEEEE-CCEEEEEEEECC----EEEEEEEeC
Confidence 55332 1225689999983 433 88875321 111 11222333 457777665443 244566554
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=88.35 E-value=21 Score=35.38 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred cceeEEEEcCCEEEEEccCCCCC----ccccEEEEE-CCC-CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCC
Q 048754 359 WGHTLSSLNGSWLVVFGGCGRQG----LLNDVFVLD-LDA-KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDA 432 (625)
Q Consensus 359 ~~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~d-~~t-~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~ 432 (625)
..|+++...++++|.+|-..... ...+...-. +.. .......+. .-..|+++...++.+|.+|--...
T Consensus 130 ~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va------~G~~hs~alt~~G~v~~wG~n~~G 203 (406)
T 4d9s_A 130 DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVA------AGAEHTAAVTEDGDLYGWGWGRYG 203 (406)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEE------ECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEe------cCCCeEEEEeCCCCEEEeeCCCCC
Confidence 46788877777899998542211 111111100 000 000122222 224588888888899999842211
Q ss_pred Cc---eeceEEEEe-cC-CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC--CCC
Q 048754 433 GV---LLSDTYLLD-LT-TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD--EEP 505 (625)
Q Consensus 433 ~~---~~~~~~~~d-~~-~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~--~~~ 505 (625)
.. ...+...-. +. ........+. .-..|++++..++.+|.+|-............+......-. ...
T Consensus 204 qlG~g~~~~~~~p~~v~~~~~~~i~~va------~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~ 277 (406)
T 4d9s_A 204 NLGLGDRTDRLVPERVTSTGGEKMSMVA------CGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277 (406)
T ss_dssp TTCSSSSCCEEEEEECCCSTTCCEEEEE------ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTS
T ss_pred CCCCCCCCCcCccEEecccCCceEEEEE------ECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCC
Confidence 10 000111100 00 0001122222 23457888887889999984332111100011111111000 011
Q ss_pred ceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC---CCcEE---EEeCCCCCCCeEEEcCCCCC
Q 048754 506 QWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS---PSQLF---LLDPSEEKPSWRILNVPGQP 579 (625)
Q Consensus 506 ~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~---~~~v~---~~d~~~~~~~W~~v~~~~~~ 579 (625)
....+. .-..|+++...+++||.+|-...+..- ..+.. ...+. .......+.
T Consensus 278 ~v~~i~----------------~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~-~~~~v~~va----- 335 (406)
T 4d9s_A 278 FISQIS----------------GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP-DDQKVVQVS----- 335 (406)
T ss_dssp CEEEEE----------------ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG-GGCCEEEEE-----
T ss_pred CEEEEE----------------ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc-CCCcEEEEE-----
Confidence 122222 224678888878899999843322111 11111 11110 122333443
Q ss_pred CCCCCcceEEEECCcEEEEEcC
Q 048754 580 PKFAWGHSTCVVGGTRVLVLGG 601 (625)
Q Consensus 580 p~~r~~~~~~~~~~~~i~i~GG 601 (625)
.-..|++++..++.+|.+|-
T Consensus 336 --~G~~hs~alt~~G~v~~wG~ 355 (406)
T 4d9s_A 336 --CGWRHTLAVTERNNVFAWGR 355 (406)
T ss_dssp --ECSSEEEEEETTSCEEEEEC
T ss_pred --eCCCeEEEEeCCCCEEEecC
Confidence 23468888888889999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=88.31 E-value=21 Score=35.15 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..++.|+.+ ..+.+||+.+. .-...... . ...-.+.+...++.+++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~--h-~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFN--LQREIDQA--H-VSEITKLKFFPSGEALISSSQD------MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSC--EEEEETTS--S-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECC-----CCEEEEeCCCc--ceeeeccc--c-cCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCC
Confidence 44567777654 35889998876 44433211 1 1111223333344566666632 36888998665
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..... +.. ...+ -.++....++.+++.|+.+ ..+.++|+.+
T Consensus 172 ~~~~~-~~~--h~~~--v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~ 212 (420)
T 3vl1_A 172 SNPRT-LIG--HRAT--VTDIAIIDRGRNVLSASLD---------GTIRLWECGT 212 (420)
T ss_dssp CCCEE-EEC--CSSC--EEEEEEETTTTEEEEEETT---------SCEEEEETTT
T ss_pred cCceE-EcC--CCCc--EEEEEEcCCCCEEEEEcCC---------CcEEEeECCC
Confidence 42222 211 1111 1233344444666666653 4677888873
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=88.14 E-value=19 Score=34.45 Aligned_cols=107 Identities=11% Similarity=-0.058 Sum_probs=52.4
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEc-CCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIE-GSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
+.+++.|+.++ .+.+||+.+.+... .+... .... .+..... ++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~-~~~~~---~~~i-~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIK-HYVGH---GNAI-NELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEE-EEESC---CSCE-EEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC-----EEEEEEchhceEee-eecCC---CCcE-EEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 45777777543 68899988763222 22211 1111 1222222 44667767642 36888897654
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.. -..+... ......-.++....++..++.|+.+ ..+.+||+.+
T Consensus 149 ~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~ 192 (366)
T 3k26_A 149 TL-VAIFGGV-EGHRDEVLSADYDLLGEKIMSCGMD---------HSLKLWRINS 192 (366)
T ss_dssp EE-EEEECST-TSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEESCS
T ss_pred eE-EEEeccc-ccccCceeEEEECCCCCEEEEecCC---------CCEEEEECCC
Confidence 31 1122100 0111111233333444566666653 5678888773
|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=0.15 Score=39.72 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.3
Q ss_pred cccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 193 AQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 193 ~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
..+++. +..++++|+++++++|++ ++++|..+..++++++..
T Consensus 10 i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 55 (115)
T 4eet_B 10 FVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQ 55 (115)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred EEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCCh
Confidence 334466 667779999999999999 888888877777765533
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=32 Score=36.99 Aligned_cols=200 Identities=11% Similarity=0.061 Sum_probs=98.9
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC-------CCccccEEEEECCCCCCEEEEcCCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR-------QGLLNDVFVLDLDAKQPTWIEVSGG 404 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-------~~~~~~~~~~d~~t~~~~W~~~~~~ 404 (625)
..++++|+.+ .+..... .+..+....+.. +++.||+..-... ......+|++++.+.+..=..+...
T Consensus 155 ~~i~v~dl~t--g~~~~~~---~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 155 REIHLMDVES--KQPLETP---LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp EEEEEEETTT--CSEEEEE---EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred EEEEEEECCC--CCCCccc---cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 3589999987 4554431 111122233344 6666665543211 1234568888887662211222221
Q ss_pred CCCC--CCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcC
Q 048754 405 APPL--PRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGG 481 (625)
Q Consensus 405 ~~p~--~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 481 (625)
+. +....+.... +++.+++...... ..+.+|++|+++....|..+... .. .........++.||+...
T Consensus 229 --~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~~---~~-~~~~~~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 229 --IPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQGD---LD-ADVSLVDNKGSTLYLLTN 299 (693)
T ss_dssp --SGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEECS---SS-SCEEEEEEETTEEEEEEC
T ss_pred --CCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeCC---CC-ceEEEEeccCCEEEEEEC
Confidence 11 2222222222 4444544332211 23689999987664458777531 11 112223334458888865
Q ss_pred CcCCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEE
Q 048754 482 LAKSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFL 560 (625)
Q Consensus 482 ~~~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~ 560 (625)
.+.. ...++.+|+++.. ..|+.+... ... .. .+...++.|++..-.+ ....+++
T Consensus 300 ~~~~------~~~l~~~d~~~~~~~~~~~l~~~------------~~~-~~--~~s~~g~~lv~~~~~~----g~~~l~~ 354 (693)
T 3iuj_A 300 RDAP------NRRLVTVDAANPGPAHWRDLIPE------------RQQ-VL--TVHSGSGYLFAEYMVD----ATARVEQ 354 (693)
T ss_dssp TTCT------TCEEEEEETTSCCGGGCEEEECC------------CSS-CE--EEEEETTEEEEEEEET----TEEEEEE
T ss_pred CCCC------CCEEEEEeCCCCCccccEEEecC------------CCC-EE--EEEEECCEEEEEEEEC----CeeEEEE
Confidence 4321 3688999987532 358876543 111 11 3333366665553221 1357899
Q ss_pred EeCCCCCCCeEEE
Q 048754 561 LDPSEEKPSWRIL 573 (625)
Q Consensus 561 ~d~~~~~~~W~~v 573 (625)
+++ +......+
T Consensus 355 ~d~--~g~~~~~l 365 (693)
T 3iuj_A 355 FDY--EGKRVREV 365 (693)
T ss_dssp ECT--TSCEEEEE
T ss_pred EEC--CCCeeEEe
Confidence 998 44444444
|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.14 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
+..++|+|+++++++||+ +|++|.++..+.+++
T Consensus 15 ~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~ 48 (109)
T 1n9l_A 15 DCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEG 48 (109)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT
T ss_pred CCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCC
Confidence 455679999999999999 888887765555543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.47 E-value=21 Score=34.26 Aligned_cols=162 Identities=7% Similarity=0.026 Sum_probs=73.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc-CCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.||.+.. +.++|+.. ..|..... ..... ..-.+++...++..++.|+.++ .+.++|..+
T Consensus 27 ~g~~las~~~D~~------i~iw~~~~--~~~~~~~~~~~~h~-~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDRR------IRIWGTEG--DSWICKSVLSEGHQ-RTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTSC------EEEEEEET--TEEEEEEEECSSCS-SCEEEEEECTTSSEEEEEETTS-----CEEEEEECC
T ss_pred CCCEEEEEcCCCe------EEEEEcCC--CcceeeeeeccccC-CcEEEEEECCCCCEEEEEECCC-----cEEEEEccC
Confidence 4556667765332 77888776 45542210 11111 1111222223445667777543 467777766
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~~r~~~~~~~~~ 472 (625)
. .+..+........ .-.+.+...++.+++.|+.+ ..+.++|+.+.. .+..+.. ...... -.+++...
T Consensus 93 ~--~~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~-~~~~~~~~~~h~~~--v~~~~~~p 160 (345)
T 3fm0_A 93 D--DFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRD------KSVWVWEVDEED-EYECVSVLNSHTQD--VKHVVWHP 160 (345)
T ss_dssp C---EEEEEEECCCSS-CEEEEEECTTSSEEEEEETT------SCEEEEEECTTS-CEEEEEEECCCCSC--EEEEEECS
T ss_pred C--CeEEEEEccCCCC-CceEEEEeCCCCEEEEEECC------CeEEEEECCCCC-CeEEEEEecCcCCC--eEEEEECC
Confidence 6 4443321110111 11122222344566667643 257777875432 1322211 001111 11222333
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeec
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECN 513 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~ 513 (625)
++.+++.|+.+ ..+.+||.. ...|..+...
T Consensus 161 ~~~~l~s~s~d---------~~i~~w~~~--~~~~~~~~~~ 190 (345)
T 3fm0_A 161 SQELLASASYD---------DTVKLYREE--EDDWVCCATL 190 (345)
T ss_dssp SSSCEEEEETT---------SCEEEEEEE--TTEEEEEEEE
T ss_pred CCCEEEEEeCC---------CcEEEEEec--CCCEEEEEEe
Confidence 44667776653 456777776 4466655444
|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
Probab=87.44 E-value=0.15 Score=43.22 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=33.6
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhh
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVAS 235 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~ 235 (625)
..+++.+..++++|+++++++|++ ++++|..+..++++.+...
T Consensus 53 i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~ 96 (167)
T 1v9y_A 53 AVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPA 96 (167)
T ss_dssp EEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTT
T ss_pred EEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccch
Confidence 334577777889999999999999 7888888888777765443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=87.37 E-value=23 Score=34.57 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=88.0
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccc-eEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWH-SSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~-~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
.++.|+.+ ..+.++|+.++ .-...-....+...... ..+.+ .+..+++.|+.+ ..+.+||+...
T Consensus 172 ~l~s~s~D-----~~i~~wd~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------~~v~~wd~~~~ 238 (380)
T 3iz6_a 172 RLITGSGD-----QTCVLWDVTTG--QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD------TTVRLWDLRIT 238 (380)
T ss_dssp CEEEECTT-----SCEEEECTTTC--CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT------SCEEEEETTTT
T ss_pred EEEEECCC-----CcEEEEEcCCC--cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC------CeEEEEECCCC
Confidence 45555543 35888999887 33322111111111111 12222 144677777743 35788887533
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
...-..+.. ...+. .++....++..++.|+.+ ..+.++|+.+. . .+......... .....
T Consensus 239 ~~~~~~~~~--h~~~v--~~v~~~p~~~~l~s~s~D---------~~i~lwd~~~~--~--~~~~~~~~~~~---~~~~~ 298 (380)
T 3iz6_a 239 SRAVRTYHG--HEGDI--NSVKFFPDGQRFGTGSDD---------GTCRLFDMRTG--H--QLQVYNREPDR---NDNEL 298 (380)
T ss_dssp CCCCEEECC--CSSCC--CEEEECTTSSEEEEECSS---------SCEEEEETTTT--E--EEEEECCCCSS---SCCSS
T ss_pred CcceEEECC--cCCCe--EEEEEecCCCeEEEEcCC---------CeEEEEECCCC--c--EEEEecccccc---ccccc
Confidence 222223221 11111 234344455677777764 56788898732 2 22211000000 00000
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCC--CCCcceEEEECCcEEEEEcCcCCC
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPK--FAWGHSTCVVGGTRVLVLGGHTGE 605 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~--~r~~~~~~~~~~~~i~i~GG~~~~ 605 (625)
+ .-.++....++++++.|+. ...+.+||+ .+..-.... +.... ...-.++...+++..++.||.++.
T Consensus 299 ~-~v~~~~~s~~g~~l~~g~~------dg~i~vwd~--~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 299 P-IVTSVAFSISGRLLFAGYS------NGDCYVWDT--LLAEMVLNL--GTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp C-SCSEEEECSSSSEEEEECT------TSCEEEEET--TTCCEEEEE--CCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred C-ceEEEEECCCCCEEEEEEC------CCCEEEEEC--CCCceEEEE--ecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 1 1123333336777777764 457889998 333322211 11111 111234445556788889987664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=87.25 E-value=23 Score=34.46 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=14.3
Q ss_pred CCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 539 CGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 539 ~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
++++++.|+. ...+.+||+.
T Consensus 302 ~~~~l~~~~~------dg~i~iwd~~ 321 (397)
T 1sq9_A 302 SGETLCSAGW------DGKLRFWDVK 321 (397)
T ss_dssp SSSEEEEEET------TSEEEEEETT
T ss_pred CCCEEEEEeC------CCeEEEEEcC
Confidence 5677777774 3478899983
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=36 Score=39.45 Aligned_cols=145 Identities=10% Similarity=0.042 Sum_probs=67.4
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.||.+. .+.+||+.+.. .-..+ .. ..... .+++...+++.++.|+.+ ..+.++|+.++
T Consensus 626 ~~~~l~s~~~d~------~i~vw~~~~~~-~~~~~--~~-h~~~v-~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~ 689 (1249)
T 3sfz_A 626 DGQRIASCGADK------TLQVFKAETGE-KLLDI--KA-HEDEV-LCCAFSSDDSYIATCSAD-----KKVKIWDSATG 689 (1249)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCC-EEEEE--CC-CSSCE-EEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred CCCEEEEEeCCC------eEEEEECCCCC-EEEEe--cc-CCCCE-EEEEEecCCCEEEEEeCC-----CeEEEEECCCC
Confidence 455666666433 38899987631 11222 11 11111 122222344566666643 35889999887
Q ss_pred CCEEE-EcCCCCCCCCCccceEEEE-c--CCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEE
Q 048754 395 QPTWI-EVSGGAPPLPRSWHSSCII-E--GSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSV 470 (625)
Q Consensus 395 ~~~W~-~~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~ 470 (625)
+.. .+.. .... -.++.+ . +..+++.|+.+ ..+.++|+.+..... .+.. ...+ -.+++.
T Consensus 690 --~~~~~~~~---~~~~--v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~-~~~~--h~~~--v~~~~~ 751 (1249)
T 3sfz_A 690 --KLVHTYDE---HSEQ--VNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRN-TMFG--HTNS--VNHCRF 751 (1249)
T ss_dssp --CEEEEEEC---CSSC--EEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEE-EECC--CSSC--EEEEEE
T ss_pred --ceEEEEcC---CCCc--EEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhh-eecC--CCCC--EEEEEE
Confidence 332 2221 1111 122233 2 22345555422 357888976654211 1111 1111 122333
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
..++.+++.|+.+ ..+.++|+.+
T Consensus 752 sp~~~~l~s~s~d---------g~v~vwd~~~ 774 (1249)
T 3sfz_A 752 SPDDELLASCSAD---------GTLRLWDVRS 774 (1249)
T ss_dssp CSSTTEEEEEESS---------SEEEEEEGGG
T ss_pred ecCCCEEEEEECC---------CeEEEEeCCC
Confidence 3344566666653 5677888763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.80 E-value=25 Score=34.40 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=71.4
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
..++ .++.|+.+ ..+.+||+.+.+.... +.. ... .-.+.+...++.+++.|+.+ ..+.+||+.
T Consensus 215 ~~~~-~~~~~~~~-----g~i~~~d~~~~~~~~~-~~~---~~~-~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~ 277 (425)
T 1r5m_A 215 VDDD-KFVIPGPK-----GAIFVYQITEKTPTGK-LIG---HHG-PISVLEFNDTNKLLLSASDD------GTLRIWHGG 277 (425)
T ss_dssp EETT-EEEEECGG-----GCEEEEETTCSSCSEE-ECC---CSS-CEEEEEEETTTTEEEEEETT------SCEEEECSS
T ss_pred cCCC-EEEEEcCC-----CeEEEEEcCCCceeee-ecc---CCC-ceEEEEECCCCCEEEEEcCC------CEEEEEECC
Confidence 3455 45666543 4689999987632222 211 111 11233333444566666532 357888876
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVV 525 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~ 525 (625)
+....... .. . ...-.++....++ +++.|+.+ ..+.+||+.+ ...+....
T Consensus 278 ~~~~~~~~-~~--~--~~~i~~~~~~~~~-~l~~~~~d---------~~i~i~d~~~----~~~~~~~~----------- 327 (425)
T 1r5m_A 278 NGNSQNCF-YG--H--SQSIVSASWVGDD-KVISCSMD---------GSVRLWSLKQ----NTLLALSI----------- 327 (425)
T ss_dssp SBSCSEEE-CC--C--SSCEEEEEEETTT-EEEEEETT---------SEEEEEETTT----TEEEEEEE-----------
T ss_pred CCccceEe-cC--C--CccEEEEEECCCC-EEEEEeCC---------CcEEEEECCC----CcEeEecc-----------
Confidence 64432222 11 1 1112344445555 66666543 5788899873 22332220
Q ss_pred CCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 526 PPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 526 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
.....-.++....++++++.|+. ...+.+||+
T Consensus 328 ~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~ 359 (425)
T 1r5m_A 328 VDGVPIFAGRISQDGQKYAVAFM------DGQVNVYDL 359 (425)
T ss_dssp CTTCCEEEEEECTTSSEEEEEET------TSCEEEEEC
T ss_pred cCCccEEEEEEcCCCCEEEEEEC------CCeEEEEEC
Confidence 01111123333336677777774 346788887
|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=86.76 E-value=0.2 Score=40.15 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=31.9
Q ss_pred ccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 194 QYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 194 ~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
.++|. +..++++|+++++++|++ ++++|..+..++++++..
T Consensus 11 ~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~ 55 (128)
T 3t50_A 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDP 55 (128)
T ss_dssp EEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCH
T ss_pred EEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCH
Confidence 34466 567779999999999999 888888887777765443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=86.65 E-value=15 Score=34.81 Aligned_cols=124 Identities=5% Similarity=-0.008 Sum_probs=61.8
Q ss_pred cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEE
Q 048754 419 EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTI 498 (625)
Q Consensus 419 ~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 498 (625)
.++.+|+.+... ..+++||+++.. ...+.. .....-++++...++++|+........ ...++++
T Consensus 54 ~~g~l~~~~~~~------~~i~~~d~~~~~--~~~~~~---~~~~~~~~i~~~~dg~l~v~~~~~~~~-----~~~i~~~ 117 (333)
T 2dg1_A 54 RQGQLFLLDVFE------GNIFKINPETKE--IKRPFV---SHKANPAAIKIHKDGRLFVCYLGDFKS-----TGGIFAA 117 (333)
T ss_dssp TTSCEEEEETTT------CEEEEECTTTCC--EEEEEE---CSSSSEEEEEECTTSCEEEEECTTSSS-----CCEEEEE
T ss_pred CCCCEEEEECCC------CEEEEEeCCCCc--EEEEee---CCCCCcceEEECCCCcEEEEeCCCCCC-----CceEEEE
Confidence 455688766421 368999987655 554421 111122344444455787765322111 2578899
Q ss_pred EcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEE
Q 048754 499 DLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRIL 573 (625)
Q Consensus 499 d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v 573 (625)
|+++ .....+... ..............++++|+.............+|++|+ ++.+...+
T Consensus 118 d~~~--~~~~~~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 177 (333)
T 2dg1_A 118 TENG--DNLQDIIED-----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP--DFRTVTPI 177 (333)
T ss_dssp CTTS--CSCEEEECS-----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT--TSCCEEEE
T ss_pred eCCC--CEEEEEEcc-----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC--CCCEEEEe
Confidence 9874 333322111 011111223333346778876432111112457999998 45555554
|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.60 E-value=0.088 Score=41.61 Aligned_cols=47 Identities=4% Similarity=0.009 Sum_probs=35.8
Q ss_pred hccccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 185 CNQQYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
+.........++|.+..++++|+++++++|++ ++++|.++..++++.
T Consensus 12 il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~ 59 (115)
T 3b33_A 12 ILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA 59 (115)
T ss_dssp HHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE
T ss_pred HHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc
Confidence 33444555556688888889999999999999 788888887776653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=86.54 E-value=20 Score=33.08 Aligned_cols=190 Identities=8% Similarity=0.054 Sum_probs=91.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+... ...+++||... .....+..... ..-+.++...++++|+..... +.+++||+...
T Consensus 88 ~g~l~v~~~~~-----~~~i~~~d~~g--~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~ 152 (286)
T 1q7f_A 88 SGDIIVTERSP-----THQIQIYNQYG--QFVRKFGATIL---QHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGN 152 (286)
T ss_dssp TTEEEEEECGG-----GCEEEEECTTS--CEEEEECTTTC---SCEEEEEECTTSCEEEEETTT-----TEEEEECTTSC
T ss_pred CCeEEEEcCCC-----CCEEEEECCCC--cEEEEecCccC---CCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCC
Confidence 67899887421 12388888543 22232311111 111334443455688875422 46889997654
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
....+... .....-...+.-.++.+|+.... .+.+.+||++... ...+...+. ...-.++++-.++
T Consensus 153 --~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~--~~~~~~~g~--~~~p~~i~~d~~G 218 (286)
T 1q7f_A 153 --VLHKFGCS--KHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQY--LRQIGGEGI--TNYPIGVGINSNG 218 (286)
T ss_dssp --EEEEEECT--TTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCE--EEEESCTTT--SCSEEEEEECTTC
T ss_pred --EEEEeCCC--CccCCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCE--EEEEccCCc--cCCCcEEEECCCC
Confidence 33333211 11111123333344578886532 2478899974322 333332110 0111334444455
Q ss_pred EEEEEcCCcCCCCcccccC-ceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSG-ESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~-~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 553 (625)
.+|+..... + .+.+||.+ ...-..+... .+.. .........++++||.. .
T Consensus 219 ~l~v~~~~~---------~~~i~~~~~~--g~~~~~~~~~-----------~~~~-~~~~i~~~~~g~l~vs~-~----- 269 (286)
T 1q7f_A 219 EILIADNHN---------NFNLTIFTQD--GQLISALESK-----------VKHA-QCFDVALMDDGSVVLAS-K----- 269 (286)
T ss_dssp CEEEEECSS---------SCEEEEECTT--SCEEEEEEES-----------SCCS-CEEEEEEETTTEEEEEE-T-----
T ss_pred CEEEEeCCC---------CEEEEEECCC--CCEEEEEccc-----------CCCC-cceeEEECCCCcEEEEC-C-----
Confidence 888875432 3 78889875 2222233221 0111 11233334478888873 2
Q ss_pred CCCcEEEEeC
Q 048754 554 SPSQLFLLDP 563 (625)
Q Consensus 554 ~~~~v~~~d~ 563 (625)
.+.|.+|++
T Consensus 270 -~~~v~v~~~ 278 (286)
T 1q7f_A 270 -DYRLYIYRY 278 (286)
T ss_dssp -TTEEEEEEC
T ss_pred -CCeEEEEEc
Confidence 246777776
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=86.53 E-value=27 Score=34.67 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=90.8
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
..++.+++.|+.+. .+.++|+.+. +....- . .....-.+..+.++ .++.|+.++ .+.+||+.
T Consensus 180 ~~~~~~l~sg~~dg------~i~vwd~~~~--~~~~~~-~---~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~ 241 (435)
T 1p22_A 180 QYDERVIITGSSDS------TVRVWDVNTG--EMLNTL-I---HHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMA 241 (435)
T ss_dssp ECCSSEEEEEETTS------CEEEEESSSC--CEEEEE-C---CCCSCEEEEECCTT-EEEEEETTS-----CEEEEECS
T ss_pred EECCCEEEEEcCCC------eEEEEECCCC--cEEEEE-c---CCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCC
Confidence 34666777777543 3889998773 322111 1 11112233334454 666666443 58889987
Q ss_pred CCCCEE-EEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE
Q 048754 393 AKQPTW-IEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471 (625)
Q Consensus 393 t~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~ 471 (625)
+.+... ...... ....-.++..+++ .++.|+.+ ..+.+||+.+..... .+.. ...+ -.++..
T Consensus 242 ~~~~~~~~~~~~~----~~~~v~~~~~~~~-~l~s~~~d------g~i~vwd~~~~~~~~-~~~~--~~~~---v~~~~~ 304 (435)
T 1p22_A 242 SPTDITLRRVLVG----HRAAVNVVDFDDK-YIVSASGD------RTIKVWNTSTCEFVR-TLNG--HKRG---IACLQY 304 (435)
T ss_dssp SSSCCEEEEEECC----CSSCEEEEEEETT-EEEEEETT------SEEEEEETTTCCEEE-EEEC--CSSC---EEEEEE
T ss_pred CCCCceeeeEecC----CCCcEEEEEeCCC-EEEEEeCC------CeEEEEECCcCcEEE-EEcC--CCCc---EEEEEe
Confidence 763221 111111 1111223344554 55555532 367889976654211 1111 1111 223344
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAG 551 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 551 (625)
++ .+++.|+.+ ..+.+||+.+. ..+... ........++.. ++..++.|+.
T Consensus 305 ~~-~~l~~g~~d---------g~i~iwd~~~~----~~~~~~------------~~h~~~v~~~~~-~~~~l~sg~~--- 354 (435)
T 1p22_A 305 RD-RLVVSGSSD---------NTIRLWDIECG----ACLRVL------------EGHEELVRCIRF-DNKRIVSGAY--- 354 (435)
T ss_dssp ET-TEEEEEETT---------SCEEEEETTTC----CEEEEE------------CCCSSCEEEEEC-CSSEEEEEET---
T ss_pred CC-CEEEEEeCC---------CeEEEEECCCC----CEEEEE------------eCCcCcEEEEEe-cCCEEEEEeC---
Confidence 44 566666643 57889998742 233332 111122344455 6777888775
Q ss_pred CCCCCcEEEEeC
Q 048754 552 LHSPSQLFLLDP 563 (625)
Q Consensus 552 ~~~~~~v~~~d~ 563 (625)
...|.+||+
T Consensus 355 ---dg~i~vwd~ 363 (435)
T 1p22_A 355 ---DGKIKVWDL 363 (435)
T ss_dssp ---TSCEEEEEH
T ss_pred ---CCcEEEEEC
Confidence 346788887
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=86.52 E-value=21 Score=33.40 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=67.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.++|+.+. .- ..+. . ..... .++....++..++.|+.+ ..+.++|+.+
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~--~~~~~~~--~-~~~~v-~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~ 86 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQ--VEVRSIQ--V-TETPV-RAGKFIARKNWIIVGSDD-----FRIRVFNYNT 86 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTT--EEEEEEE--C-CSSCE-EEEEEEGGGTEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEEcCCC------cEEEEECCCC--ceeEEee--c-cCCcE-EEEEEeCCCCEEEEECCC-----CEEEEEECCC
Confidence 344555666432 2778888762 22 2221 1 11111 122223334466666643 3588899887
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG- 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~- 472 (625)
++. -..+... ...-.+.+...++.+++.|+.+ ..+.++|+.+....-..+.. .... -.++.+.
T Consensus 87 ~~~-~~~~~~h----~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~~--h~~~---v~~v~~~p 150 (304)
T 2ynn_A 87 GEK-VVDFEAH----PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEG--HEHF---VMCVAFNP 150 (304)
T ss_dssp CCE-EEEEECC----SSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGTTEEEEEECC--CCSC---EEEEEECT
T ss_pred CcE-EEEEeCC----CCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCCcchhhhhcc--cCCc---EEEEEECC
Confidence 732 2222211 1111222233344566666643 25777887553211111221 1111 1222332
Q ss_pred -CcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 473 -RTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 473 -~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
++.+++.|+.+ ..+.++|+..
T Consensus 151 ~~~~~l~sgs~D---------~~v~iwd~~~ 172 (304)
T 2ynn_A 151 KDPSTFASGCLD---------RTVKVWSLGQ 172 (304)
T ss_dssp TCTTEEEEEETT---------SEEEEEETTC
T ss_pred CCCCEEEEEeCC---------CeEEEEECCC
Confidence 33567777764 5677888863
|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
Probab=86.27 E-value=0.11 Score=41.36 Aligned_cols=35 Identities=6% Similarity=0.153 Sum_probs=28.1
Q ss_pred ccCCCCCCcccccccccccCc-hhHHHHhhhcccCc
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTP 230 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~ 230 (625)
++.+..++++|+++++++||+ ++++|..+..++++
T Consensus 18 ~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~ 53 (120)
T 3mqq_A 18 LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPS 53 (120)
T ss_dssp EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSS
T ss_pred EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCC
Confidence 455666779999999999999 88888777666655
|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.17 Score=41.94 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=31.3
Q ss_pred ccCCCCCCcccccccccccCc-hhHHH--HhhhcccCchhhhhHHhH
Q 048754 196 FSGGHSPLSQHQDICGILQLS-DEVLA--HNILSRLTPRDVASIGSV 239 (625)
Q Consensus 196 ~~~~~~~~~~n~~~~~~~g~~-~e~~~--~~~~~~~~~~~~~~~~~~ 239 (625)
++.....+++|+++++++|++ +++.+ ..+...+||+|...+...
T Consensus 25 ~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~ 71 (142)
T 3mr0_A 25 WNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAA 71 (142)
T ss_dssp ECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHH
T ss_pred EEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHH
Confidence 366777889999999999999 44432 246778999998766443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=86.23 E-value=22 Score=33.27 Aligned_cols=225 Identities=11% Similarity=0.108 Sum_probs=102.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCce-EEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW-RRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W-~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
++.+++.|+.+. .+.+||+.+. +- ..+. . ..... .++....++..++.|+.++ .+.+||+.+
T Consensus 76 ~~~~l~s~~~d~------~i~vwd~~~~--~~~~~~~--~-~~~~v-~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~ 138 (312)
T 4ery_A 76 DSNLLVSASDDK------TLKIWDVSSG--KCLKTLK--G-HSNYV-FCCNFNPQSNLIVSGSFDE-----SVRIWDVKT 138 (312)
T ss_dssp TSSEEEEEETTS------EEEEEETTTC--CEEEEEE--C-CSSCE-EEEEECSSSSEEEEEETTS-----CEEEEETTT
T ss_pred CCCEEEEECCCC------EEEEEECCCC--cEEEEEc--C-CCCCE-EEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Confidence 445666666532 3788888763 22 1221 1 11111 1222223345666776543 588999987
Q ss_pred CCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 394 KQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 394 ~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
.+. -..+.... . . -..+.+ .++.+++.|+.+ ..+.+||+.+.... ..+... ...+ -..+....
T Consensus 139 ~~~-~~~~~~~~---~-~-v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~-~~~~~~-~~~~--~~~~~~~~ 202 (312)
T 4ery_A 139 GKC-LKTLPAHS---D-P-VSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCL-KTLIDD-DNPP--VSFVKFSP 202 (312)
T ss_dssp CCE-EEEECCCS---S-C-EEEEEECTTSSEEEEEETT------SCEEEEETTTCCEE-EEECCS-SCCC--EEEEEECT
T ss_pred CEE-EEEecCCC---C-c-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCcee-eEEecc-CCCc--eEEEEECC
Confidence 621 22232211 1 1 122223 344566666643 35788897654311 112111 1111 11222333
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
++..++.|+.+ ..+.+||+.+. + .+.... +...............++.+++.|+.
T Consensus 203 ~~~~l~~~~~d---------~~i~iwd~~~~--~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~sg~~---- 257 (312)
T 4ery_A 203 NGKYILAATLD---------NTLKLWDYSKG--K--CLKTYT--------GHKNEKYCIFANFSVTGGKWIVSGSE---- 257 (312)
T ss_dssp TSSEEEEEETT---------TEEEEEETTTT--E--EEEEEC--------SSCCSSSCCCEEEECSSSCEEEECCT----
T ss_pred CCCEEEEEcCC---------CeEEEEECCCC--c--EEEEEE--------ecCCceEEEEEEEEeCCCcEEEEECC----
Confidence 44566666543 57888998732 2 222220 00111111122333346677777775
Q ss_pred CCCCcEEEEeCCCCCCCe-EEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCC
Q 048754 553 HSPSQLFLLDPSEEKPSW-RILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEE 606 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W-~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~ 606 (625)
...|.+||+. +..= ..+. + ... .-.++...+++.+++.++...++
T Consensus 258 --dg~i~vwd~~--~~~~~~~~~--~--h~~-~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 258 --DNLVYIWNLQ--TKEIVQKLQ--G--HTD-VVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp --TSCEEEEETT--TCCEEEEEC--C--CSS-CEEEEEECSSSSEEEEEECTTTC
T ss_pred --CCEEEEEECC--Cchhhhhhh--c--cCC-cEEEEeecCcCCceEEEEccCCc
Confidence 3478899983 3322 1221 1 111 11233344456777777654443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.91 E-value=0.52 Score=46.68 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=62.1
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
+.++.||+.+.. ..++++|..+-+..|+.-. . +. . +..++.++.+|+.|+.+ ..++.+|..
T Consensus 7 v~~~~v~~gs~d-------g~v~a~d~~tG~~~W~~~~--~-~~-~---s~p~~~~g~~~v~~s~d-----g~l~a~d~~ 67 (369)
T 2hz6_A 7 LPETLLFVSTLD-------GSLHAVSKRTGSIKWTLKE--D-PV-L---QVPTHVEEPAFLPDPND-----GSLYTLGSK 67 (369)
T ss_dssp -CTTEEEEEETT-------SEEEEEETTTCCEEEEEEC--C-CS-C---CCC-----CCEEECTTT-----CCEEEC---
T ss_pred eeCCEEEEEcCC-------CEEEEEECCCCCEEEEecC--C-Cc-e---ecceEcCCCEEEEeCCC-----CEEEEEECC
Confidence 446677765532 2389999887667888542 1 11 1 11222345577776533 358999998
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+++..|..-... +... ..+.+...++.+|+ |+ .-..++.+|+.+.+..|+.-... ..+ .+. .
T Consensus 68 tG~~~w~~~~~~--~~~~-~~sp~~~~~~~v~~-g~------~dg~v~a~D~~tG~~~w~~~~~~---~~~----~~p-~ 129 (369)
T 2hz6_A 68 NNEGLTKLPFTI--PELV-QASPCRSSDGILYM-GK------KQDIWYVIDLLTGEKQQTLSSAF---ADS----LSP-S 129 (369)
T ss_dssp --CCSEECSCCH--HHHH-TTCSCC-----CCC-CE------EEEEEEEECCC---------------------------
T ss_pred CCceeeeeeccC--cccc-ccCceEecCCEEEE-Ee------CCCEEEEEECCCCcEEEEecCCC---ccc----ccc-c
Confidence 876667632211 1000 11111212444544 33 12468999998888888753321 011 111 3
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL 510 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 510 (625)
++.+|+ |+. ...++.+|+.+....|+.-
T Consensus 130 ~~~v~~-~~~---------dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 130 TSLLYL-GRT---------EYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ---EEE-EEE---------EEEEECCCSSSSSCCCEEE
T ss_pred CCEEEE-Eec---------CCEEEEEECCCCCEEEeEe
Confidence 324444 332 1467788887666678753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=85.81 E-value=31 Score=36.99 Aligned_cols=194 Identities=12% Similarity=0.090 Sum_probs=90.5
Q ss_pred CCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCC--------CccccEEEEECCCCCCEEEEcCC
Q 048754 332 DDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQ--------GLLNDVFVLDLDAKQPTWIEVSG 403 (625)
Q Consensus 332 ~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~d~~t~~~~W~~~~~ 403 (625)
..++++|+.+ .+.... ...+.... .+.+-..+++.++++..... .....++++++.+.+..-..+..
T Consensus 147 ~~i~v~dl~t--g~~~~~--~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~ 221 (695)
T 2bkl_A 147 AVLHVIDVDS--GEWSKV--DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221 (695)
T ss_dssp CEEEEEETTT--CCBCSS--CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCC--CCCcCC--cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence 4599999987 343200 11111111 22232334455555554322 23456999999877321122222
Q ss_pred CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCc
Q 048754 404 GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLA 483 (625)
Q Consensus 404 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 483 (625)
.. ..+....+.....+++.+++...... ..+.+|.++..+. .|..+... . . .....+..++ .+|+.....
T Consensus 222 ~~-~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~--~~~~l~~~--~-~-~~~~~~~~~g-~l~~~s~~~ 291 (695)
T 2bkl_A 222 RT-GDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEK--DFRLLVKG--V-G-AKYEVHAWKD-RFYVLTDEG 291 (695)
T ss_dssp CC-CCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCS--SCEEEEEC--S-S-CCEEEEEETT-EEEEEECTT
T ss_pred cC-CCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCC--ceEEeecC--C-C-ceEEEEecCC-cEEEEECCC
Confidence 11 11122222222233333343332221 2357888875444 37777532 1 1 1122233455 466654321
Q ss_pred CCCCcccccCceEEEEcCCCC-CceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEe
Q 048754 484 KSGHLRLRSGESYTIDLGDEE-PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLD 562 (625)
Q Consensus 484 ~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d 562 (625)
. . ...++.+|+++.. ..|+.+... .+......+...++++++....+ ....+|.++
T Consensus 292 ~-~-----~~~l~~~d~~~~~~~~~~~l~~~-------------~~~~~l~~~~~~~~~lv~~~~~d----g~~~l~~~~ 348 (695)
T 2bkl_A 292 A-P-----RQRVFEVDPAKPARASWKEIVPE-------------DSSASLLSVSIVGGHLSLEYLKD----ATSEVRVAT 348 (695)
T ss_dssp C-T-----TCEEEEEBTTBCSGGGCEEEECC-------------CSSCEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred C-C-----CCEEEEEeCCCCCccCCeEEecC-------------CCCCeEEEEEEECCEEEEEEEEC----CEEEEEEEe
Confidence 1 1 3688999987421 238877532 11111122233378887776532 245788888
Q ss_pred C
Q 048754 563 P 563 (625)
Q Consensus 563 ~ 563 (625)
+
T Consensus 349 ~ 349 (695)
T 2bkl_A 349 L 349 (695)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=85.18 E-value=24 Score=32.84 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=50.5
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEec-C---CEEEEEecCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMP-C---GRIIIFGGSIA 550 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~---~~l~v~GG~~~ 550 (625)
++++.|+.+ ..+.++|+.+....|..+..+ ......-.++.+. + +.+++.|+.+
T Consensus 171 ~~l~sgs~D---------~~v~lwd~~~~~~~~~~~~~l------------~~H~~~V~~v~~sp~~~~~~~las~s~D- 228 (297)
T 2pm7_B 171 RKFVTGGAD---------NLVKIWKYNSDAQTYVLESTL------------EGHSDWVRDVAWSPTVLLRSYMASVSQD- 228 (297)
T ss_dssp CEEEEEETT---------SCEEEEEEETTTTEEEEEEEE------------CCCSSCEEEEEECCCCSSSEEEEEEETT-
T ss_pred ceEEEEcCC---------CcEEEEEEcCCCceEEEEEEe------------cCCCCceEEEEECCCCCCceEEEEEECC-
Confidence 466666653 456677766433345554443 1111222334443 2 3777777753
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.++|+......|........ .....-.++...+++.+++.||.++
T Consensus 229 -----~~v~iWd~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~ 276 (297)
T 2pm7_B 229 -----RTCIIWTQDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDN 276 (297)
T ss_dssp -----SCEEEEEESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTS
T ss_pred -----CcEEEEEeCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCC
Confidence 35677777323345654332111 1111122333445667888888655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.15 E-value=22 Score=34.50 Aligned_cols=159 Identities=10% Similarity=0.036 Sum_probs=71.0
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCc
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRS 411 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~ 411 (625)
.++++|+.+ .+...+... .....+....- ++++|++............+|++|+.+. .+..+... .+....
T Consensus 169 ~l~~~d~~~--g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~-~~~~~~ 240 (396)
T 3c5m_A 169 RLIKVDIET--GELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS--NVRKIKEH-AEGESC 240 (396)
T ss_dssp EEEEEETTT--CCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC--CCEESSCC-CTTEEE
T ss_pred eEEEEECCC--CcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC--ceeEeecc-CCCccc
Confidence 488888876 455555311 11111111111 2444555442111112357999999877 66666541 111111
Q ss_pred cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCC----
Q 048754 412 WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKS---- 485 (625)
Q Consensus 412 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~---- 485 (625)
...... +++.+++. +..... ....++++|+.+.. ...+.. .+ . +...... +++++++.+....
T Consensus 241 -~~~~~spdg~~l~~~-~~~~~~-~~~~l~~~d~~~g~--~~~l~~--~~--~--~~~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 241 -THEFWIPDGSAMAYV-SYFKGQ-TDRVIYKANPETLE--NEEVMV--MP--P--CSHLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp -EEEEECTTSSCEEEE-EEETTT-CCEEEEEECTTTCC--EEEEEE--CC--S--EEEEEECSSSSEEEEEECCC-----
T ss_pred -cceEECCCCCEEEEE-ecCCCC-ccceEEEEECCCCC--eEEeee--CC--C--CCCCccCCCCceEEEecCCcceeec
Confidence 111222 34444443 222111 11348999987654 555432 12 1 1233333 4455555432210
Q ss_pred C---CcccccCceEEEEcCCCCCceeEeee
Q 048754 486 G---HLRLRSGESYTIDLGDEEPQWKQLEC 512 (625)
Q Consensus 486 ~---~~~~~~~~~~~~d~~~~~~~W~~~~~ 512 (625)
. ........++++|+.+ .....+..
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~--~~~~~l~~ 337 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKA--KSAQKLCK 337 (396)
T ss_dssp -----CCCCCCEEEEEETTT--TBCCEEEE
T ss_pred cccccccCCCCcEEEEeccc--CceEEccC
Confidence 0 0000136799999884 35555543
|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.13 E-value=0.24 Score=38.85 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=34.5
Q ss_pred cccccccccccCCCCCCcccccccccccC---c-hhHHHHhhhcccCchh
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQL---S-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~---~-~e~~~~~~~~~~~~~~ 232 (625)
........++|.+..++++|+++++++|+ + ++++|..+..++++..
T Consensus 22 ~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 71 (118)
T 2w0n_A 22 QSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD 71 (118)
T ss_dssp HCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH
T ss_pred hhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh
Confidence 33344445568888888999999999997 5 7788888877776543
|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.98 E-value=0.35 Score=42.45 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=34.6
Q ss_pred ccccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCch
Q 048754 188 QYDQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPR 231 (625)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~ 231 (625)
.......++|.+..+.++|+++++++|++ ++++|.++..++++.
T Consensus 88 ~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~ 132 (190)
T 2jhe_A 88 ALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGF 132 (190)
T ss_dssp HCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTC
T ss_pred hCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCC
Confidence 33444445688888889999999999999 778888888777754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=84.91 E-value=22 Score=32.23 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=71.2
Q ss_pred EEEEcCCEEEE-EccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEE
Q 048754 363 LSSLNGSWLVV-FGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYL 441 (625)
Q Consensus 363 ~~~~~~~~iyv-~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 441 (625)
++.-.++++|+ .... .+.+++||..+. ....+.... ...-++.+...++.+|+... . ..+++
T Consensus 29 i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~--~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~---~----~~i~~ 91 (270)
T 1rwi_B 29 VAVDSAGNVYVTSEGM-----YGRVVKLATGST--GTTVLPFNG---LYQPQGLAVDGAGTVYVTDF---N----NRVVT 91 (270)
T ss_dssp EEECTTCCEEEEECSS-----SCEEEEECC-------EECCCCS---CCSCCCEEECTTCCEEEEET---T----TEEEE
T ss_pred eEECCCCCEEEEccCC-----CCcEEEecCCCc--ccceEeeCC---cCCcceeEECCCCCEEEEcC---C----CEEEE
Confidence 33334456888 5332 245888888766 433332211 11112333333456888654 1 36888
Q ss_pred EecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCC
Q 048754 442 LDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQ 521 (625)
Q Consensus 442 ~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~ 521 (625)
||++... ...+..... ..-+++++..++++|+.... ...+++++.. +.........
T Consensus 92 ~d~~~~~--~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~---------~~~i~~~~~~--~~~~~~~~~~-------- 147 (270)
T 1rwi_B 92 LAAGSNN--QTVLPFDGL---NYPEGLAVDTQGAVYVADRG---------NNRVVKLAAG--SKTQTVLPFT-------- 147 (270)
T ss_dssp ECTTCSC--CEECCCCSC---SSEEEEEECTTCCEEEEEGG---------GTEEEEECTT--CCSCEECCCC--------
T ss_pred EeCCCce--EeeeecCCc---CCCcceEECCCCCEEEEECC---------CCEEEEEECC--CceeEeeccc--------
Confidence 9976543 333332111 12234444445578887432 2567788655 2222221111
Q ss_pred CCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 522 SAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 522 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
............+++||+.... ...|++||+.
T Consensus 148 -----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~ 179 (270)
T 1rwi_B 148 -----GLNDPDGVAVDNSGNVYVTDTD------NNRVVKLEAE 179 (270)
T ss_dssp -----SCCSCCCEEECTTCCEEEEEGG------GTEEEEECTT
T ss_pred -----cCCCceeEEEeCCCCEEEEECC------CCEEEEEecC
Confidence 0011122333336778887543 3578999983
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=84.80 E-value=25 Score=32.77 Aligned_cols=225 Identities=10% Similarity=0.029 Sum_probs=105.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+..-.. +.+++||+.+ .....+..+ .+. .+.+...++++++..+ +.+++||+.++
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~--~~~~~~~~~----~~~-~~i~~~~dG~l~v~~~-------~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFT--KQVQRVTMD----APV-SSVALRQSGGYVATIG-------TKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTT--CCEEEEECS----SCE-EEEEEBTTSSEEEEET-------TEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCC--CcEEEEeCC----Cce-EEEEECCCCCEEEEEC-------CeEEEEECCCC
Confidence 46788776432 2389999876 333333211 111 2233333445666532 36899999888
Q ss_pred CCEEEEcCCCC--CCCCCccceEEEEcCCEEEEEcCcCCCC------ceeceEEEEecCCCCCceEEcCCCCCCCCCCcc
Q 048754 395 QPTWIEVSGGA--PPLPRSWHSSCIIEGSKLVVSGGCTDAG------VLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGH 466 (625)
Q Consensus 395 ~~~W~~~~~~~--~p~~r~~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~ 466 (625)
++..+.... .+..+.. ..+...++.+|+. .+.... .....++.++++. . ...+... .. ...
T Consensus 84 --~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~--~~~~~~~-~~---~pn 152 (297)
T 3g4e_A 84 --SAVVLATVDNDKKNNRFN-DGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-H--VKKYFDQ-VD---ISN 152 (297)
T ss_dssp --EEEEEEECCTTCSSEEEE-EEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-C--EEEEEEE-ES---BEE
T ss_pred --cEEEEEecCCCCCCCCCC-CEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-C--EEEEeec-cc---ccc
Confidence 776554321 1222222 2222334467763 211110 1224678887532 2 3332211 11 112
Q ss_pred eEEEECCc-EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeE---eeeccccCcCCCCCCCCCCccceEEEEecCCEE
Q 048754 467 SLSVYGRT-KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQ---LECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRI 542 (625)
Q Consensus 467 ~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~---~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l 542 (625)
+.+...++ .||+.... ...+++||++..+..... +... .........++.-.+++|
T Consensus 153 gi~~spdg~~lyv~~~~---------~~~i~~~~~d~~~G~~~~~~~~~~~-----------~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSL---------SYSVDAFDYDLQTGQISNRRSVYKL-----------EKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp EEEECTTSCEEEEEEGG---------GTEEEEEEECTTTCCEEEEEEEEEC-----------CGGGCEEEEEEEBTTSCE
T ss_pred ceEEcCCCCEEEEecCC---------CCcEEEEeccCCCCcccCcEEEEEC-----------CCCCCCCCeeEECCCCCE
Confidence 34443333 67777443 367888887421223221 1111 000111123333346788
Q ss_pred EEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC---CcEEEEEcCcC
Q 048754 543 IIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG---GTRVLVLGGHT 603 (625)
Q Consensus 543 ~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~---~~~i~i~GG~~ 603 (625)
||.... ...|++||+ ++.+....- ..|.. ...++.+. .+.|||.....
T Consensus 213 wva~~~------~~~v~~~d~--~tG~~~~~i---~~p~~--~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 213 WVACYN------GGRVIRLDP--VTGKRLQTV---KLPVD--KTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEET------TTEEEEECT--TTCCEEEEE---ECSSS--BEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEEcC------CCEEEEEcC--CCceEEEEE---ECCCC--CceEEEEeCCCCCEEEEEcCCc
Confidence 887532 246999999 445543322 12221 12333442 25788876544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=84.43 E-value=32 Score=33.66 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+.+ ..-... -.... ..-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~--~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNF--NLQREI--DQAHV-SEITKLKFFPSGEALISSSQD-----MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTS--CEEEEE--TTSSS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEeCCC--cceeee--ccccc-CccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCC
Confidence 455666776532 388888876 232222 11111 111222323344566666643 36889998876
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
+... .+... ...-.+.+...++..++.|+.+ ..+.+||+.+..
T Consensus 172 ~~~~-~~~~h----~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~ 214 (420)
T 3vl1_A 172 SNPR-TLIGH----RATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGT 214 (420)
T ss_dssp CCCE-EEECC----SSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTE
T ss_pred cCce-EEcCC----CCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCc
Confidence 3221 22111 1111223333344566666532 257778876543
|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
Probab=84.30 E-value=0.19 Score=42.42 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=33.8
Q ss_pred ccccc-CCCCCCcccccccccccCchhHHHHhhhcccCchhhhhH
Q 048754 193 AQYFS-GGHSPLSQHQDICGILQLSDEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 193 ~~~~~-~~~~~~~~n~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~ 236 (625)
..+++ .+..++++|+++++++|++ +++|..+.+++++.+...+
T Consensus 30 i~~~d~~~~~i~~~N~~~~~~~g~~-~~~G~~~~~~~~~~~~~~~ 73 (158)
T 3k3c_A 30 LVGLEGPDHRFVAVNAAYRGFSPLL-DTVGQPAREVYPELEGQQI 73 (158)
T ss_dssp EEEEETTTTEEEEECHHHHHHCTTC-CSTTSBHHHHSGGGGGTTH
T ss_pred EEEEECCCcEeHHHHHHHHHHcCCc-hhcCCcHHHhCCchhHHHH
Confidence 33456 6677779999999999999 9999888888887654433
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=84.00 E-value=29 Score=40.29 Aligned_cols=185 Identities=8% Similarity=-0.022 Sum_probs=87.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.+|++.+.. ....+ .. ..... .+++...+++.++.||.+ ..+.++|..++
T Consensus 972 ~g~~l~~g~~~g------~i~i~d~~~~~-~~~~~--~~-h~~~v-~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~ 1035 (1249)
T 3sfz_A 972 HLEYVAFGDEDG------AIKIIELPNNR-VFSSG--VG-HKKAV-RHIQFTADGKTLISSSED-----SVIQVWNWQTG 1035 (1249)
T ss_dssp TSSEEEEEETTS------CCEEEETTTTS-CEEEC--CC-CSSCC-CCEEECSSSSCEEEECSS-----SBEEEEETTTT
T ss_pred CCCEEEEEcCCC------CEEEEEcCCCc-eeeec--cc-CCCce-EEEEECCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 445555565432 37888887631 22222 11 11111 122222344566666643 35889999887
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
....+... ...-.+.....++ .++.|+.+ ..+.+||+.+....... .. ...+ -.+++...++
T Consensus 1036 --~~~~~~~~----~~~v~~~~~~~~~-~l~~~~~d------g~v~vwd~~~~~~~~~~-~~--~~~~--v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1036 --DYVFLQAH----QETVKDFRLLQDS-RLLSWSFD------GTVKVWNVITGRIERDF-TC--HQGT--VLSCAISSDA 1097 (1249)
T ss_dssp --EEECCBCC----SSCEEEEEECSSS-EEEEEESS------SEEEEEETTTTCCCEEE-EC--CSSC--CCCEEECSSS
T ss_pred --ceEEEecC----CCcEEEEEEcCCC-cEEEEECC------CcEEEEECCCCceeEEE-cc--cCCc--EEEEEECCCC
Confidence 65544321 1111222233343 44555532 36888998665532222 11 1111 1233344444
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEE-EecCCEEEEEecCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAV-SMPCGRIIIFGGSIAGLH 553 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~~l~v~GG~~~~~~ 553 (625)
.+++.|+.+ ..+.+||+.+. ..+... ........++ ...++++++.|+.+
T Consensus 1098 ~~l~s~s~d---------~~v~iwd~~~~----~~~~~l------------~~h~~~v~~~~~s~dg~~lat~~~d---- 1148 (1249)
T 3sfz_A 1098 TKFSSTSAD---------KTAKIWSFDLL----SPLHEL------------KGHNGCVRCSAFSLDGILLATGDDN---- 1148 (1249)
T ss_dssp SSCEEECCS---------SCCCEECSSSS----SCSBCC------------CCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEcCC---------CcEEEEECCCc----ceeeee------------ccCCCcEEEEEECCCCCEEEEEeCC----
Confidence 666776653 45667777632 122211 1111112223 33367788887753
Q ss_pred CCCcEEEEeCC
Q 048754 554 SPSQLFLLDPS 564 (625)
Q Consensus 554 ~~~~v~~~d~~ 564 (625)
..+.+||+.
T Consensus 1149 --g~i~vwd~~ 1157 (1249)
T 3sfz_A 1149 --GEIRIWNVS 1157 (1249)
T ss_dssp --SCCCEEESS
T ss_pred --CEEEEEECC
Confidence 346778873
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.79 E-value=37 Score=33.87 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=33.8
Q ss_pred CEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 369 SWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 369 ~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
++.++.|+.+ ..+.+||+.+.......+... .....+.+ ..++ .+++.|+.+ ..+.+||+.+..
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~-~sd~-~~l~s~~~d------~~v~vwd~~~~~ 273 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFGH---KHFVSSIC-CGKD-YLLLSAGGD------DKIFAWDWKTGK 273 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCCC---SSCEEEEE-ECST-TEEEEEESS------SEEEEEETTTCC
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecCC---CCceEEEE-ECCC-CEEEEEeCC------CeEEEEECCCCc
Confidence 6677777754 368889988763222222221 11111222 2234 566666632 367888876544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=83.21 E-value=56 Score=35.44 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=98.0
Q ss_pred eEEEeccCCCCceEEcccCCCC---CCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC----CCEEE---EcC-
Q 048754 334 TFVLNLDAANPEWRRVSVKSSP---PGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK----QPTWI---EVS- 402 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p---~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~----~~~W~---~~~- 402 (625)
+++||..+ .++......... ....-++.+.-.++.|+|.. .. .-+++||..+. ...+. ...
T Consensus 394 L~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 394 INRYDYAT--RQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-CL-----GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEETTT--TEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-SS-----SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred HhhcCcCC--CcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-CC-----CceEEEccccccccCCcceeccccccc
Confidence 78898876 567655321111 11122333433456677742 21 13778886531 00232 111
Q ss_pred CCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCC
Q 048754 403 GGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGL 482 (625)
Q Consensus 403 ~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 482 (625)
....+.. .-.+.+.-.++.+++.||.. +-+++||+.+.. +..+.....+....-.+++.-.++.|++-. .
T Consensus 466 ~~~l~~~-~i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~ 535 (758)
T 3ott_A 466 HNGLSGM-FINQIIPDNEGNVWVLLYNN------KGIDKINPRTRE--VTKLFADELTGEKSPNYLLCDEDGLLWVGF-H 535 (758)
T ss_dssp GGTCSCS-CEEEEEECTTSCEEEEETTC------SSEEEEETTTTE--EEEECTTTSCGGGCEEEEEECTTSCEEEEE-T
T ss_pred ccccccc-eeeeEEEcCCCCEEEEccCC------CCcEEEeCCCCc--eEEecCCCcCCCcccceEEECCCCCEEEEe-c
Confidence 0011111 11223333445788866632 247889986654 776643212111111233333445787642 1
Q ss_pred cCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEe
Q 048754 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLD 562 (625)
Q Consensus 483 ~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d 562 (625)
.-+.+||+.+ .++...... ..|.. ...+.+ ..++.|++.. ..-+.+||
T Consensus 536 ----------~Gl~~~~~~~--~~~~~~~~~----------gl~~~-~i~~i~-~~~g~lWi~t--------~~Gl~~~~ 583 (758)
T 3ott_A 536 ----------GGVMRINPKD--ESQQSISFG----------SFSNN-EILSMT-CVKNSIWVST--------TNGLWIID 583 (758)
T ss_dssp ----------TEEEEECC----CCCCBCCCC----------C---C-CEEEEE-EETTEEEEEE--------SSCEEEEE
T ss_pred ----------CceEEEecCC--CceEEeccc----------CCCcc-ceEEEE-ECCCCEEEEC--------CCCeEEEc
Confidence 4577888873 344333211 11211 122333 3377888863 23588999
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 563 PSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 563 ~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
+ .+.+..... .|...+. .++....+.-+.|||.++
T Consensus 584 ~--~~~~~~~~~----~~~~~~~-~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 584 R--KTMDARQQN----MTNKRFT-SLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp T--TTCCEEEC------CCCCCS-EEEEETTTTEEEEECBSE
T ss_pred C--CCceeEEec----CCCCcee-eeEEECCCCcEEEecCCc
Confidence 9 455554432 2223333 333333235566777654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=83.01 E-value=31 Score=32.41 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=14.8
Q ss_pred ecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 537 MPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 537 ~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
..++++++.|+.+ ..+.+||+
T Consensus 224 s~~~~~l~s~s~D------g~i~iwd~ 244 (340)
T 4aow_A 224 SPDGSLCASGGKD------GQAMLWDL 244 (340)
T ss_dssp CTTSSEEEEEETT------CEEEEEET
T ss_pred CCCCCEEEEEeCC------CeEEEEEe
Confidence 3467788888753 46778887
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.93 E-value=35 Score=32.84 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEE--c-CCEEEEEcCcCCCCceeceEEEEecC
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCII--E-GSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
..++.|+.+ ..+.++|+.+. +.. .+... .... .++.+ . ++..++.|+.+ ..+.++|+.
T Consensus 167 ~~l~t~s~D-----~~v~lwd~~~~--~~~~~~~~h---~~~v--~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~ 228 (354)
T 2pbi_B 167 MQILTASGD-----GTCALWDVESG--QLLQSFHGH---GADV--LCLDLAPSETGNTFVSGGCD------KKAMVWDMR 228 (354)
T ss_dssp SEEEEEETT-----SEEEEEETTTC--CEEEEEECC---SSCE--EEEEECCCSSCCEEEEEETT------SCEEEEETT
T ss_pred CEEEEEeCC-----CcEEEEeCCCC--eEEEEEcCC---CCCe--EEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 344555533 35888999877 332 22211 1111 11222 1 23566767643 367888976
Q ss_pred CCCCceEE-cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCC
Q 048754 446 TDKPMWRE-IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAV 524 (625)
Q Consensus 446 ~~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~ 524 (625)
+.. ... +.. ...+ -.++....++.+++.|+.+ ..+.+||+... . .+....
T Consensus 229 ~~~--~~~~~~~--h~~~--v~~v~~~p~~~~l~s~s~D---------~~v~lwd~~~~--~--~~~~~~---------- 279 (354)
T 2pbi_B 229 SGQ--CVQAFET--HESD--VNSVRYYPSGDAFASGSDD---------ATCRLYDLRAD--R--EVAIYS---------- 279 (354)
T ss_dssp TCC--EEEEECC--CSSC--EEEEEECTTSSEEEEEETT---------SCEEEEETTTT--E--EEEEEC----------
T ss_pred CCc--EEEEecC--CCCC--eEEEEEeCCCCEEEEEeCC---------CeEEEEECCCC--c--EEEEEc----------
Confidence 654 322 211 1111 1223333344677777753 56788898732 2 222220
Q ss_pred CCCCccceEEEEe-cCCEEEEEecCCCCCCCCCcEEEEeCCCCCCC-eEEEcCCCCCCCCCCcceEEEECCcEEEEEcCc
Q 048754 525 VPPPRLDHVAVSM-PCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPS-WRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGH 602 (625)
Q Consensus 525 ~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~-W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~ 602 (625)
.........++.+ .++.+++.|+. ...+.+||+. +.. -..+. + ....-.++...+++..++.|+.
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~--~~~~~~~l~--~---h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVL--KGSRVSILF--G---HENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETT--TCSEEEEEC--C---CSSCEEEEEECTTSSCEEEEET
T ss_pred CCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECC--CCceEEEEE--C---CCCcEEEEEECCCCCEEEEEcC
Confidence 0111222333333 36677777764 3478889983 332 11221 1 1111223444456778888886
Q ss_pred CC
Q 048754 603 TG 604 (625)
Q Consensus 603 ~~ 604 (625)
++
T Consensus 347 D~ 348 (354)
T 2pbi_B 347 DH 348 (354)
T ss_dssp TS
T ss_pred CC
Confidence 65
|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=82.82 E-value=0.66 Score=36.07 Aligned_cols=43 Identities=7% Similarity=0.004 Sum_probs=31.7
Q ss_pred cccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 191 QSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 191 ~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
....+++.+..++++|+++++++|++ ++++|..+..+.++++.
T Consensus 18 ~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~ 61 (124)
T 3lyx_A 18 DAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDT 61 (124)
T ss_dssp SEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTH
T ss_pred ceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchh
Confidence 33335577777889999999999999 77887777755555443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.79 E-value=36 Score=32.95 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=31.2
Q ss_pred EEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE--cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 317 RLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL--NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 317 ~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
.+++.|+.+. .+.+||+.+... -..+. . ....-.+..+ .+.++++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~~~~~~~------~v~~~d~~~~~~-~~~~~--~---~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 157 CLVAVGTRGP------KVQLCDLKSGSC-SHILQ--G---HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp CEEEEEESSS------SEEEEESSSSCC-CEEEC--C---CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred cEEEEEcCCC------eEEEEeCCCcce-eeeec--C---CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 3566665432 388999876321 12221 1 1111122222 2334777777543 5888998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=82.56 E-value=31 Score=32.00 Aligned_cols=234 Identities=10% Similarity=0.017 Sum_probs=111.3
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.+.... .+++||+.+ . ...+.. +. ..-.+++.-.++++|+.... ...+++||+.++
T Consensus 39 g~~l~~~~~~~~------~i~~~~~~~--~-~~~~~~---~~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQN------RTWAWSDDG--Q-LSPEMH---PS-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGGT------EEEEEETTS--C-EEEEES---SC-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTC
T ss_pred CCEEEEEeCCCC------EEEEEECCC--C-eEEEEC---CC-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCC
Confidence 445888775422 389999877 3 444421 11 11123333345567776532 135899999877
Q ss_pred CCEEEEcCCC--CCCCCCccceEEEEcCCEEEEE----cCcCC-------CCceeceEEEEecCCCCCceEEcCCCCCCC
Q 048754 395 QPTWIEVSGG--APPLPRSWHSSCIIEGSKLVVS----GGCTD-------AGVLLSDTYLLDLTTDKPMWREIPTSWSPP 461 (625)
Q Consensus 395 ~~~W~~~~~~--~~p~~r~~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~ 461 (625)
+...+... ..+..+. ...+...++.+|+. |.... .......++.|++. .. ...+... ..
T Consensus 101 --~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~-~~- 172 (296)
T 3e5z_A 101 --EWESIADSFEGKKLNSP-NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRD-RV- 172 (296)
T ss_dssp --CEEEEECEETTEECCCC-CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECC-CS-
T ss_pred --cEEEEeeccCCCCCCCC-CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecC-CC-
Confidence 55544321 0011111 22333445578885 33110 01112478888865 33 4443321 11
Q ss_pred CCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCce-eEeeeccccCcCCCCCCCCCCccceEEEEecCC
Q 048754 462 SRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQW-KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCG 540 (625)
Q Consensus 462 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 540 (625)
...+.+...++++++.... ...+++||+.. ..+. ....... .....| ..++.-.++
T Consensus 173 --~~~gi~~s~dg~~lv~~~~---------~~~i~~~~~~~-~g~~~~~~~~~~--------~~~~~p---~~i~~d~~G 229 (296)
T 3e5z_A 173 --KPNGLAFLPSGNLLVSDTG---------DNATHRYCLNA-RGETEYQGVHFT--------VEPGKT---DGLRVDAGG 229 (296)
T ss_dssp --SEEEEEECTTSCEEEEETT---------TTEEEEEEECS-SSCEEEEEEEEC--------CSSSCC---CSEEEBTTS
T ss_pred --CCccEEECCCCCEEEEeCC---------CCeEEEEEECC-CCcCcCCCeEee--------CCCCCC---CeEEECCCC
Confidence 1133444444455544332 26788998862 2233 1111100 000111 123334477
Q ss_pred EEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEE-CCc-EEEEEcCcCCCCCccCceEEEEcc
Q 048754 541 RIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV-GGT-RVLVLGGHTGEEWVLNELHELCLA 618 (625)
Q Consensus 541 ~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~-~i~i~GG~~~~~~~~~d~~~~~~~ 618 (625)
+|||.. .+.|.+||+ +......+.. |.. -.+++.. .++ .||+-.. +.+|+|++.
T Consensus 230 ~l~v~~--------~~~v~~~~~--~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~ 285 (296)
T 3e5z_A 230 LIWASA--------GDGVHVLTP--DGDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS--------TEFWSIETN 285 (296)
T ss_dssp CEEEEE--------TTEEEEECT--TSCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET--------TEEEEEECS
T ss_pred CEEEEc--------CCeEEEECC--CCCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC--------CeEEEEEcc
Confidence 888876 236899998 3333444432 222 1223332 333 4555432 358888886
Q ss_pred CCC
Q 048754 619 SKQ 621 (625)
Q Consensus 619 ~~~ 621 (625)
+..
T Consensus 286 ~~~ 288 (296)
T 3e5z_A 286 VRG 288 (296)
T ss_dssp CCB
T ss_pred ccc
Confidence 653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.14 E-value=35 Score=32.32 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=33.6
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEE----EEcCCEEEEEccCCCCCccccEEEEEC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLS----SLNGSWLVVFGGCGRQGLLNDVFVLDL 391 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~d~ 391 (625)
+.+++.|+.+. .+.+||+.+.......+........+.-.+.+ ...++..++.|+.+ ..+.+||+
T Consensus 129 ~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~ 197 (357)
T 3i2n_A 129 APEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDL 197 (357)
T ss_dssp CCEEEEEETTS------CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEET
T ss_pred ccEEEEEeCCC------eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEEC
Confidence 34555565432 38889987642233433211111111222222 11344566666643 36899999
Q ss_pred CCC
Q 048754 392 DAK 394 (625)
Q Consensus 392 ~t~ 394 (625)
.+.
T Consensus 198 ~~~ 200 (357)
T 3i2n_A 198 RNM 200 (357)
T ss_dssp TTT
T ss_pred ccC
Confidence 887
|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
Probab=81.85 E-value=0.39 Score=37.75 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCcccccccccccCc-hhHHHH-hhhcccCchhhhhHHhH
Q 048754 201 SPLSQHQDICGILQLS-DEVLAH-NILSRLTPRDVASIGSV 239 (625)
Q Consensus 201 ~~~~~n~~~~~~~g~~-~e~~~~-~~~~~~~~~~~~~~~~~ 239 (625)
.+.|+|+++++++||+ +++.+. .+..++||+|...+...
T Consensus 15 ~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~ 55 (115)
T 3h9w_A 15 AFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNF 55 (115)
T ss_dssp EEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHH
T ss_pred cEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHH
Confidence 3458999999999999 666653 35678999998776443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=81.61 E-value=60 Score=34.67 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=68.3
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLT 445 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~ 445 (625)
.++.+++.|+.++ .+.++|+.+. .-. .+... .... .+.+...++..++.|+.+ ..+.++|..
T Consensus 440 ~~g~~l~sgs~Dg-----~v~vwd~~~~--~~~~~~~~h---~~~v-~~~~~s~~~~~l~s~s~D------~~i~iwd~~ 502 (694)
T 3dm0_A 440 SDGQFALSGSWDG-----ELRLWDLAAG--VSTRRFVGH---TKDV-LSVAFSLDNRQIVSASRD------RTIKLWNTL 502 (694)
T ss_dssp TTSSEEEEEETTS-----EEEEEETTTT--EEEEEEECC---SSCE-EEEEECTTSSCEEEEETT------SCEEEECTT
T ss_pred CCCCEEEEEeCCC-----cEEEEECCCC--cceeEEeCC---CCCE-EEEEEeCCCCEEEEEeCC------CEEEEEECC
Confidence 3445667777543 6888998877 332 22211 1111 122222344556666643 256677753
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEEC-Cc--EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYG-RT--KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQS 522 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~--~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~ 522 (625)
... .+..... ....+..-.++.+. ++ .+++.|+.+ ..+.++|+.+ .+ .+...
T Consensus 503 ~~~-~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------~~v~vwd~~~--~~--~~~~~--------- 557 (694)
T 3dm0_A 503 GEC-KYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD---------KTVKVWNLSN--CK--LRSTL--------- 557 (694)
T ss_dssp SCE-EEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT---------SCEEEEETTT--CC--EEEEE---------
T ss_pred CCc-ceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC---------CeEEEEECCC--Cc--EEEEE---------
Confidence 321 1222111 11111112233332 21 356666653 5678889873 22 22222
Q ss_pred CCCCCCccce-EEEEecCCEEEEEecCCCCCCCCCcEEEEeCC
Q 048754 523 AVVPPPRLDH-VAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPS 564 (625)
Q Consensus 523 ~~~p~~r~~~-~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~ 564 (625)
....... ++....++++++.||.+ ..|.++|+.
T Consensus 558 ---~~h~~~v~~v~~spdg~~l~sg~~D------g~i~iwd~~ 591 (694)
T 3dm0_A 558 ---AGHTGYVSTVAVSPDGSLCASGGKD------GVVLLWDLA 591 (694)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETT------SBCEEEETT
T ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECC
Confidence 1111112 23333467788888753 467788883
|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
Probab=81.43 E-value=0.48 Score=34.92 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=27.2
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcc
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSR 227 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~ 227 (625)
++|.+..++++|+++++++|++ ++++|.++..+
T Consensus 7 ~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 7 TLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred EEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 4466777789999999999999 78887777666
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=81.42 E-value=40 Score=32.55 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDK 448 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 448 (625)
..+|++|+.+. ....+... +..........-+++.|++... . ..++++|+.+..
T Consensus 60 ~~l~~~d~~~g--~~~~lt~~--~~~~~~~~~~spdg~~l~~~~~-~------~~l~~~d~~~g~ 113 (388)
T 3pe7_A 60 WNYYLLDLNTQ--VATQLTEG--RGDNTFGGFLSPDDDALFYVKD-G------RNLMRVDLATLE 113 (388)
T ss_dssp CEEEEEETTTC--EEEECCCS--SCBCSSSCEECTTSSEEEEEET-T------TEEEEEETTTCC
T ss_pred ceEEEEeCCCC--ceEEeeeC--CCCCccceEEcCCCCEEEEEeC-C------CeEEEEECCCCc
Confidence 36999999988 77777643 2222111222234544544432 1 378889987655
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.50 E-value=40 Score=32.35 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.++|+.+. +-... -...............+..+++.|+.++ .+.++|+.+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~--~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~ 202 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQ--VVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCP 202 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTT--EEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCC--cEEEE--EcCcCCceEEEEecCCCCCceeeecccc-----cccccccccc
Confidence 455666666533 2888898762 22211 1111111111111123445777777543 5888999877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEE-
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY- 471 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~- 471 (625)
+. -..+.. ........++.+ .++.+++.|+.+ ..+.+||+.+.....+ +.. ...+ -..+.+
T Consensus 203 ~~-~~~~~~---~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~~~~~-~~~--h~~~---v~~v~fs 266 (344)
T 4gqb_B 203 KP-ASQIGC---SAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTSCVLS-SAV--HSQC---VTGLVFS 266 (344)
T ss_dssp SC-EEECC-------CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--CCEE-EEC--CSSC---EEEEEEC
T ss_pred ce-eeeeec---ceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCcEEEE-EcC--CCCC---EEEEEEc
Confidence 32 222221 111111122233 345677777632 2578889765442222 111 1111 122233
Q ss_pred CCc-EEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 472 GRT-KVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 472 ~~~-~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.++ .+++.|+.+ ..+.++|..+
T Consensus 267 p~g~~~lasgs~D---------~~i~vwd~~~ 289 (344)
T 4gqb_B 267 PHSVPFLASLSED---------CSLAVLDSSL 289 (344)
T ss_dssp SSSSCCEEEEETT---------SCEEEECTTC
T ss_pred cCCCeEEEEEeCC---------CeEEEEECCC
Confidence 232 566666653 4677888873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=80.39 E-value=59 Score=33.86 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=95.5
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCC-CCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPT-SWSPP 461 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~-~~~p~ 461 (625)
+.+++.|..+. ....+... +.++.-|..... +++++|+... ..+.+.++|.++.+.... ++. +..|.
T Consensus 320 g~v~~vd~~~~--~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~-i~vgg~~Ph 388 (567)
T 1qks_A 320 GKILLVDYTDL--NNLKTTEI--SAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAI-EDTGGQTPH 388 (567)
T ss_dssp TEEEEEETTCS--SEEEEEEE--ECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEE-EECSSSSBC
T ss_pred CeEEEEecCCC--ccceeeee--eccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEE-EeccCcCCC
Confidence 46888888765 33333322 344555655444 3444555332 246789999876553232 233 23444
Q ss_pred CCCcceEEEEC-CcEEEEEcCCcCCCCcccccCceEEEEcCCCC---CceeEeeeccccCcCCCCCCCCCCccceEEEEe
Q 048754 462 SRLGHSLSVYG-RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEE---PQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM 537 (625)
Q Consensus 462 ~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~---~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 537 (625)
+..+... ... .+.+|+.+-.. .+.+.++|..+.. ..|+.+.... ...... ......
T Consensus 389 pg~g~~~-~~p~~g~v~~t~~~g--------~~~Vsvid~~~~~~~~~~~kvv~~i~----------~~g~g~-~~i~~~ 448 (567)
T 1qks_A 389 PGRGANF-VHPTFGPVWATSHMG--------DDSVALIGTDPEGHPDNAWKILDSFP----------ALGGGS-LFIKTH 448 (567)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSS--------SSEEEEEECCTTTCTTTBTSEEEEEE----------CSCSCC-CCEECC
T ss_pred Cccceee-ECCCCCcEEEeCCCC--------CCeEEEecCCCCCCccccCEEEEEEe----------cCCCCC-EEEEeC
Confidence 4322222 232 24677764321 2567888877421 2398887762 011111 111122
Q ss_pred c-CCEEEEEecCCCCCCCCCcEEEEeCCCC-----CCCeEEEcCC---CCCC-CCCCcceEEEECCcEEEEEcCcCCCCC
Q 048754 538 P-CGRIIIFGGSIAGLHSPSQLFLLDPSEE-----KPSWRILNVP---GQPP-KFAWGHSTCVVGGTRVLVLGGHTGEEW 607 (625)
Q Consensus 538 ~-~~~l~v~GG~~~~~~~~~~v~~~d~~~~-----~~~W~~v~~~---~~~p-~~r~~~~~~~~~~~~i~i~GG~~~~~~ 607 (625)
. +.++||---.+......+.|.+||+.+. ...+..+.+. +-.. ..|..|....-.+..+++- -+++..
T Consensus 449 p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s-~~~~~~- 526 (567)
T 1qks_A 449 PNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS-VWNGKD- 526 (567)
T ss_dssp TTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE-EECCTT-
T ss_pred CCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE-eecCCC-
Confidence 2 3478885322111111458999998422 2234555321 1111 1222232222224466654 222221
Q ss_pred ccCceEEEEccCC
Q 048754 608 VLNELHELCLASK 620 (625)
Q Consensus 608 ~~~d~~~~~~~~~ 620 (625)
..+.|.++|..|.
T Consensus 527 ~~~~i~v~D~~t~ 539 (567)
T 1qks_A 527 QESALVVVDDKTL 539 (567)
T ss_dssp SCCEEEEEETTTT
T ss_pred CCCcEEEEECCCc
Confidence 1467778876654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=80.15 E-value=40 Score=31.72 Aligned_cols=103 Identities=13% Similarity=0.175 Sum_probs=49.7
Q ss_pred EEEEEccCCCCCccccEEEEECCCCCCE--EEEcCCCCCCCCCccceEEEEcCCE-EEEEcCcCCCCceeceEEEEec-C
Q 048754 370 WLVVFGGCGRQGLLNDVFVLDLDAKQPT--WIEVSGGAPPLPRSWHSSCIIEGSK-LVVSGGCTDAGVLLSDTYLLDL-T 445 (625)
Q Consensus 370 ~iyv~GG~~~~~~~~~~~~~d~~t~~~~--W~~~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~-~ 445 (625)
..++.|+.+ ..+.+||+.+.... ...+... ...-.+.+...++. +++.|+.+ ..+.+||+ .
T Consensus 24 ~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~ 88 (342)
T 1yfq_A 24 SLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRY----KHPLLCCNFIDNTDLQIYVGTVQ------GEILKVDLIG 88 (342)
T ss_dssp TEEEEEETT-----SEEEEEEEETTTTEEEEEEEEEC----SSCEEEEEEEESSSEEEEEEETT------SCEEEECSSS
T ss_pred CEEEEEcCC-----CeEEEEEeCCCCccccceeeeec----CCceEEEEECCCCCcEEEEEcCC------CeEEEEEecc
Confidence 455666543 35788887766311 2222111 11112333333456 66666632 36888997 6
Q ss_pred CCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 446 TDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 446 ~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+.. ...+... +....-.++.... +.+++.|+.+ ..+.++|+.
T Consensus 89 ~~~--~~~~~~~--~~~~~v~~l~~~~-~~~l~s~~~d---------~~i~iwd~~ 130 (342)
T 1yfq_A 89 SPS--FQALTNN--EANLGICRICKYG-DDKLIAASWD---------GLIEVIDPR 130 (342)
T ss_dssp SSS--EEECBSC--CCCSCEEEEEEET-TTEEEEEETT---------SEEEEECHH
T ss_pred CCc--eEecccc--CCCCceEEEEeCC-CCEEEEEcCC---------CeEEEEccc
Confidence 654 4444320 0111112333333 3566666643 567777765
|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
Probab=80.14 E-value=5.1 Score=38.56 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCeeEE-EecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 53 TPTSFV-VADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 53 ~~~~i~-~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
.+.|++ +++. .+++|+.+|+...+++|+++++++|++..+++.
T Consensus 40 Qp~G~Ll~~~~--~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~ 83 (337)
T 2ool_A 40 QPHGYLFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLT 83 (337)
T ss_dssp CTTSEEEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBC
T ss_pred CCCEEEEEEEC--CCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcC
Confidence 344554 3443 258999999999999999999999999888863
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=80.06 E-value=0.63 Score=45.13 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=34.3
Q ss_pred cccccccC---CCCCCcccccccccccCc-hhHHHHhhhcccCchhhh
Q 048754 191 QSAQYFSG---GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 191 ~~~~~~~~---~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~ 234 (625)
....++|. +..++++|+++++++||+ +|++|..+..++++++..
T Consensus 22 ~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~ 69 (332)
T 2wkq_A 22 KNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDR 69 (332)
T ss_dssp SEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCH
T ss_pred CcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCH
Confidence 33344576 777789999999999999 889988888887765543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.03 E-value=41 Score=31.85 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=53.7
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE--EcCCEEEEEccCCCCCccccEEEEECC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS--LNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
++..++.|+.+. .+.++|+.+ .+...+. .... .. .++.. ..++.+++.|+.++ .+.+||+.
T Consensus 97 ~~~~l~s~~~dg------~v~iwd~~~--~~~~~~~--~~~~-~v-~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~ 159 (368)
T 3mmy_A 97 DGSKVFTASCDK------TAKMWDLSS--NQAIQIA--QHDA-PV-KTIHWIKAPNYSCVMTGSWDK-----TLKFWDTR 159 (368)
T ss_dssp TSSEEEEEETTS------EEEEEETTT--TEEEEEE--ECSS-CE-EEEEEEECSSCEEEEEEETTS-----EEEEECSS
T ss_pred CCCEEEEEcCCC------cEEEEEcCC--CCceeec--cccC-ce-EEEEEEeCCCCCEEEEccCCC-----cEEEEECC
Confidence 444555665432 388899877 3443332 1111 11 12222 23556777777543 58899988
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
+.+.... +.. +. . ..........+++.++ ...+.+|++......+..+.
T Consensus 160 ~~~~~~~-~~~---~~--~-~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~ 208 (368)
T 3mmy_A 160 SSNPMMV-LQL---PE--R-CYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIE 208 (368)
T ss_dssp CSSCSEE-EEC---SS--C-EEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECC
T ss_pred CCcEEEE-Eec---CC--C-ceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhcc
Confidence 7632222 111 11 1 1222333444444332 13578888766554455544
|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.02 E-value=0.32 Score=38.93 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=31.6
Q ss_pred cccccccccccCCCCCCccccccccccc------------Cc-hhHHHHhhhcccC
Q 048754 187 QQYDQSAQYFSGGHSPLSQHQDICGILQ------------LS-DEVLAHNILSRLT 229 (625)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g------------~~-~e~~~~~~~~~~~ 229 (625)
........++|.+..++++|+++++++| ++ ++++|.++..+++
T Consensus 12 ~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 12 DNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp TTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred hcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 3344455566888888899999999996 66 6777777666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 625 | ||||
| d1n9la_ | 109 | d.110.3.6 (A:) Putative blue light receptor, phot- | 8e-20 | |
| d1jnua_ | 104 | d.110.3.6 (A:) Photoreceptor phy3 flavin-binding d | 4e-19 | |
| d1bywa_ | 110 | d.110.3.6 (A:) Erg potassium channel, N-terminal d | 6e-12 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 7e-08 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 2e-07 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 6e-07 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 3e-05 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-04 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-04 | |
| d1xj3a1 | 106 | d.110.3.2 (A:154-259) Histidine kinase FixL heme d | 1e-04 | |
| d1ew0a_ | 130 | d.110.3.2 (A:) Histidine kinase FixL heme domain { | 3e-04 | |
| d1mzua_ | 110 | d.110.3.1 (A:) PYP domain of sensor histidine kina | 5e-04 | |
| d1ll8a_ | 114 | d.110.3.5 (A:) N-terminal PAS domain of Pas kinase | 8e-04 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 0.004 |
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Putative blue light receptor, phot-lov1 domain species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 83.0 bits (204), Expect = 8e-20
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
+FVVADA PD P++Y ++ F TGY DEVLG NCRF + DP V
Sbjct: 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRF---------LQGEGTDPKEVQ 55
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
+IR +++G LLN++KDGTP N L + PI+ DG V+ +G+Q
Sbjct: 56 KIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQ 104
|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Photoreceptor phy3 flavin-binding domain, lov2 species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]
Score = 80.7 bits (198), Expect = 4e-19
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
SFV+ D PD PII+ + F T Y +EVLG NCRFLQ R +
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQL-------- 53
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQ 164
IR ++E + ++LN+ K G N L +RD++G V + IG+Q
Sbjct: 54 -IRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDVQYFIGVQ 101
|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Erg potassium channel, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 6e-12
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVS 115
F++A+A + +IY N F GY EV+ R C P QRR +
Sbjct: 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAA-------A 55
Query: 116 EIRRCLEEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+I + L E + E+ ++KDG+ + + + P++++DG V I
Sbjct: 56 QIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 103
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 52.5 bits (124), Expect = 7e-08
Identities = 41/325 (12%), Positives = 75/325 (23%), Gaps = 21/325 (6%)
Query: 295 KFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSS 354
+ R F + + G+ V D D+++ W
Sbjct: 63 IVSDRTVTVTKHDMFCPGIS----MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV 118
Query: 355 PPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHS 414
G S +G + G + V +K TW + +
Sbjct: 119 ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLTADK 175
Query: 415 SCIIEGSKLVVSGGCTDAGVLL---SDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVY 471
+ G V S T+ + +R ++
Sbjct: 176 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAMC 233
Query: 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLD 531
G + + + + S + R
Sbjct: 234 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--PNTVFASNGLYFARTF 291
Query: 532 HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP---SEEKPSWRILNVPGQPPKFAWGHST 588
H +V +P G I GG G+ + P E+ ++ N HS
Sbjct: 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV---RVYHSI 348
Query: 589 CVVGGT-RVLVLGGHTGEEWVLNEL 612
++ RV GG + N
Sbjct: 349 SLLLPDGRVFNGGGGLCGDCTTNHF 373
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 2e-07
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGREVTGALEL 271
I L E+ + +LS L P+D+ CR R L ++ + + C+ E
Sbjct: 19 ISLLPKELALY-VLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE------- 70
Query: 272 MTKKLGWGRLARELTTLEAVCWRKFTVR 299
L R W+ +R
Sbjct: 71 ---PLHIKRRKVIKPGFIHSPWKSAYIR 95
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 6e-07
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 206 HQDICGIL--QLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHV-RKMVCQNAWG 262
+D L + D + NILS L + + + VC+ ++T + + +K++ +
Sbjct: 7 QRDFITALPARGLDHIA-ENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65
Query: 263 REVTGALELMTKKLGWG-----RLARELTTLEAVCWRK 295
+ + ++ GWG + +R
Sbjct: 66 DSLW---RGLAERRGWGQYLFKNKPPDGNAPPNSFYRA 100
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 215 LSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHV 252
L DE+L I S L ++ + VC+R +L +E +
Sbjct: 4 LPDELLLG-IFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 21/111 (18%), Positives = 27/111 (24%), Gaps = 10/111 (9%)
Query: 307 CNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL 366
C N + GG D V R ++
Sbjct: 187 SGAGVCVLHNCIYAAGG-----YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 241
Query: 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCI 417
G + V GG L+ V D D TW EV RS +
Sbjct: 242 QGR-IYVLGGYDGHTFLDSVECYDPDTD--TWSEV--TRMTSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 34/259 (13%), Positives = 61/259 (23%), Gaps = 23/259 (8%)
Query: 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSG 427
G + GG RQ L + + + TW+ ++ +PRS + C++ G V G
Sbjct: 4 GRLIYTAGGYFRQSL-SYLEAYNPSNG--TWLRLA--DLQVPRSGLAGCVVGGLLYAVGG 58
Query: 428 GCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSP-----PSRLGHSLSVYGRTKVLMFGGL 482
+ L W P + + G + +
Sbjct: 59 RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS 118
Query: 483 AKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLD----------- 531
+ L + VG +
Sbjct: 119 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 178
Query: 532 --HVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTC 589
+ + + I L+ E P K
Sbjct: 179 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGI 238
Query: 590 VVGGTRVLVLGGHTGEEWV 608
V R+ VLGG+ G ++
Sbjct: 239 TVHQGRIYVLGGYDGHTFL 257
|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Bradyrhizobium japonicum [TaxId: 375]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 7/101 (6%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D I + E G+ E +G+N L + D +
Sbjct: 6 IDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMP-----EPDRSRHDSYISRYRTTSDP 60
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
I + ++DGT L + ++ + G
Sbjct: 61 HIIGIGRIVTGKRRDGTTFPMHLSIGEMQSGGE--PYFTGF 99
|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Rhizobium meliloti [TaxId: 382]
Score = 39.3 bits (90), Expect = 3e-04
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 63 FDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE 122
D I+ N GY +EV+G+N R L D + + +
Sbjct: 32 SATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEP-----YRHEHDGYLQRYMATGEK 86
Query: 123 EGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
I + +KDG+ +L + +R G
Sbjct: 87 RIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGF 125
|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} Length = 110 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PYP-like domain: PYP domain of sensor histidine kinase Ppr species: Rhodospirillum centenum [TaxId: 34018]
Score = 37.8 bits (87), Expect = 5e-04
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 62 AFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCL 121
D I N+ +G + V+GRN F P +
Sbjct: 18 QVDGSGVIHRYNRTESRLSGRIPERVIGRN--FFTEVAPCTNIPA------FSGRFMDGV 69
Query: 122 EEGIEFQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHI 160
G F P+ ++R+ D +
Sbjct: 70 TSGTLDARFDFVFDFQMAPVRVQIRMQNAGVPDRYWIFV 108
|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: N-terminal PAS domain of Pas kinase domain: N-terminal PAS domain of Pas kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 8e-04
Identities = 10/95 (10%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 69 IIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQ 128
I+ N GY + +++G+ R L + + ++ + G
Sbjct: 21 ILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEA-LSEEHMEADGHAAVVFGTVVD 79
Query: 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGI 163
+ G + + + +R + + +
Sbjct: 80 ----IISRSGEKIPVSVWMKRMRQERR--LCCVVV 108
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.0 bits (80), Expect = 0.004
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQL-TKNEHVRKMVCQNAW 261
I L E+ I + L D+ + V + ++ K+ + K + +
Sbjct: 6 ITSLPFEISLK-IFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.89 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 99.73 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 99.64 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 99.64 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 99.48 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 99.35 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 99.32 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 99.25 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 99.11 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 99.09 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 98.95 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 98.67 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 96.81 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.23 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 95.64 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 95.54 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 95.53 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.48 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 95.44 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 95.36 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 95.27 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 94.81 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 94.55 | |
| d2oola2 | 114 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 94.5 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 94.5 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 94.45 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 94.41 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.08 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 93.47 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 92.38 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.01 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 91.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 91.85 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 91.23 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 91.05 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 91.02 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 90.82 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.62 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 90.42 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.3 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 90.12 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 89.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 89.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 89.03 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 88.61 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 88.22 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 88.21 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 87.09 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 87.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 86.32 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 85.9 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 85.69 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 85.68 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 85.09 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 81.92 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 81.66 | |
| d2veaa3 | 127 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 81.48 | |
| d2o9ca2 | 127 | Bacteriophytochrome BphP {Deinococcus radiodurans | 81.3 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 80.57 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-34 Score=279.72 Aligned_cols=265 Identities=16% Similarity=0.196 Sum_probs=226.0
Q ss_pred ceeeeecccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCC---CCCCCCeEEEeccCCCCceEEcccCCCCCCc
Q 048754 282 ARELTTLEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVN---MQPMDDTFVLNLDAANPEWRRVSVKSSPPGR 358 (625)
Q Consensus 282 ~~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r 358 (625)
...+||+.+++|.+++ ++|.+|.+|++++++++|||+||.... ...++++|+||+.+ ++|+++ +++|.+|
T Consensus 20 ~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--~~w~~~--~~~p~~r 92 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPC--APMSVPR 92 (288)
T ss_dssp CEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEEC--CCCSSCC
T ss_pred eEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccc--cccccc--cccccee
Confidence 3557999999999986 788899999999999999999997432 34578899999988 799987 6788999
Q ss_pred cceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceece
Q 048754 359 WGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSD 438 (625)
Q Consensus 359 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 438 (625)
.+|+++++ ++++|++||......+++++.||+.++ .|...+.. |.+|.+|+++.. .+++|++||.... ...++
T Consensus 93 ~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~r~~~~~~~~-~~~~~~~GG~~~~-~~~~~ 165 (288)
T d1zgka1 93 NRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPM--LTRRIGVGVAVL-NRLLYAVGGFDGT-NRLNS 165 (288)
T ss_dssp BTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTT--EEEECCCC--SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCC
T ss_pred cceecccc-ceeeEEecceecccccceeeeeccccC--cccccccc--ccccccceeeee-eecceEecCcccc-cccce
Confidence 99999988 568999999988778899999999999 99998866 778999999888 5599999997644 46778
Q ss_pred EEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCc
Q 048754 439 TYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGV 518 (625)
Q Consensus 439 ~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~ 518 (625)
++.||+.+.. |...+. .+.++..|+++++++ +++++||...... .++.+.||+. +.+|..+...
T Consensus 166 ~~~~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~-~i~i~GG~~~~~~----~~~~~~~~~~--~~~~~~~~~~----- 229 (288)
T d1zgka1 166 AECYYPERNE--WRMITA--MNTIRSGAGVCVLHN-CIYAAGGYDGQDQ----LNSVERYDVE--TETWTFVAPM----- 229 (288)
T ss_dssp EEEEETTTTE--EEECCC--CSSCCBSCEEEEETT-EEEEECCBCSSSB----CCCEEEEETT--TTEEEECCCC-----
T ss_pred EEEeeccccc--cccccc--cccccccccccceee-eEEEecCcccccc----ccceeeeeec--ceeeecccCc-----
Confidence 9999987655 998875 667888889888877 9999999876543 5899999998 6799998755
Q ss_pred CCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEE
Q 048754 519 GSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCV 590 (625)
Q Consensus 519 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~ 590 (625)
|.+|..|+++.+ +++|||+||.+.. ...+++|+||+ .+++|+.+. .+|.+|.+|++++
T Consensus 230 -------p~~r~~~~~~~~-~~~l~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~---~~p~~R~~~~~~~ 287 (288)
T d1zgka1 230 -------KHRRSALGITVH-QGRIYVLGGYDGH-TFLDSVECYDP--DTDTWSEVT---RMTSGRSGVGVAV 287 (288)
T ss_dssp -------SSCCBSCEEEEE-TTEEEEECCBCSS-CBCCEEEEEET--TTTEEEEEE---ECSSCCBSCEEEE
T ss_pred -------cCcccceEEEEE-CCEEEEEecCCCC-eecceEEEEEC--CCCEEEECC---CCCCCcEeEEEEE
Confidence 789999999988 8999999998643 44789999999 789999995 7899999999876
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-33 Score=275.76 Aligned_cols=265 Identities=17% Similarity=0.215 Sum_probs=222.4
Q ss_pred ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCC----CCccccEEEE
Q 048754 314 AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGR----QGLLNDVFVL 389 (625)
Q Consensus 314 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~ 389 (625)
+++.||||||... ..++++++||+.+ ++|+++ +++|.+|.+|+++++ +++|||+||... ...++++|+|
T Consensus 3 ~g~~iyv~GG~~~--~~~~~~~~yd~~t--~~W~~~--~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~y 75 (288)
T d1zgka1 3 VGRLIYTAGGYFR--QSLSYLEAYNPSN--GTWLRL--ADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCY 75 (288)
T ss_dssp CCCCEEEECCBSS--SBCCCEEEEETTT--TEEEEC--CCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEE
T ss_pred cCCEEEEECCcCC--CCCceEEEEECCC--CeEEEC--CCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhc
Confidence 4678999999853 5788999999998 799987 678999999999988 569999999742 2357899999
Q ss_pred ECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEE
Q 048754 390 DLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLS 469 (625)
Q Consensus 390 d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~ 469 (625)
|+.++ +|..++.+ |.+|.+|+++.+ ++++|++||... ....++++.||+.+.. |...+. .+.+|.+|+++
T Consensus 76 d~~~~--~w~~~~~~--p~~r~~~~~~~~-~~~i~~~gg~~~-~~~~~~~~~~~~~~~~--~~~~~~--~~~~r~~~~~~ 145 (288)
T d1zgka1 76 NPMTN--QWSPCAPM--SVPRNRIGVGVI-DGHIYAVGGSHG-CIHHNSVERYEPERDE--WHLVAP--MLTRRIGVGVA 145 (288)
T ss_dssp ETTTT--EEEECCCC--SSCCBTCEEEEE-TTEEEEECCEET-TEECCCEEEEETTTTE--EEECCC--CSSCCBSCEEE
T ss_pred ccccc--cccccccc--cceecceecccc-ceeeEEecceec-ccccceeeeeccccCc--cccccc--cccccccceee
Confidence 99999 99999977 889999999888 569999999764 4477889999976655 988776 77899999999
Q ss_pred EECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCC
Q 048754 470 VYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSI 549 (625)
Q Consensus 470 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 549 (625)
++.+ +++++||...... ..+++.||+. +.+|...... +.++..++++.. +++|+++||.+
T Consensus 146 ~~~~-~~~~~GG~~~~~~----~~~~~~~d~~--~~~~~~~~~~------------~~~~~~~~~~~~-~~~i~i~GG~~ 205 (288)
T d1zgka1 146 VLNR-LLYAVGGFDGTNR----LNSAECYYPE--RNEWRMITAM------------NTIRSGAGVCVL-HNCIYAAGGYD 205 (288)
T ss_dssp EETT-EEEEECCBCSSCB----CCCEEEEETT--TTEEEECCCC------------SSCCBSCEEEEE-TTEEEEECCBC
T ss_pred eeee-cceEecCcccccc----cceEEEeecc--cccccccccc------------ccccccccccce-eeeEEEecCcc
Confidence 8877 9999999875443 5789999998 6689887654 677788888888 89999999986
Q ss_pred CCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCccCceEEEEccCCCCC
Q 048754 550 AGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASKQDS 623 (625)
Q Consensus 550 ~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~~d~~~~~~~~~~~~ 623 (625)
.. ...++++.||+ .+++|..+. ..|.+|..|+++.++ ++||||||.++.. .++++|+||+.++++.
T Consensus 206 ~~-~~~~~~~~~~~--~~~~~~~~~---~~p~~r~~~~~~~~~-~~l~v~GG~~~~~-~~~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 206 GQ-DQLNSVERYDV--ETETWTFVA---PMKHRRSALGITVHQ-GRIYVLGGYDGHT-FLDSVECYDPDTDTWS 271 (288)
T ss_dssp SS-SBCCCEEEEET--TTTEEEECC---CCSSCCBSCEEEEET-TEEEEECCBCSSC-BCCEEEEEETTTTEEE
T ss_pred cc-ccccceeeeee--cceeeeccc---CccCcccceEEEEEC-CEEEEEecCCCCe-ecceEEEEECCCCEEE
Confidence 54 34789999999 789999884 678899999999887 5999999997765 6899999999988764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.96 E-value=5.3e-28 Score=246.15 Aligned_cols=298 Identities=16% Similarity=0.181 Sum_probs=211.0
Q ss_pred cccCeeEEeeecCCCCCCCcccceEEECCEEEEEcccCCCC-----CCCCCeEEEeccCCCCceEEcccCCCCCCcccee
Q 048754 288 LEAVCWRKFTVRGAVEPSRCNFSACAAGNRLVLFGGEGVNM-----QPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHT 362 (625)
Q Consensus 288 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~ 362 (625)
+..++|.... +.|..+.+++++..+++||+|||+.... ..+..+++||+.+ ++|+.+.....+..+.+++
T Consensus 6 p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~~~~~~~~~~~~~ 80 (387)
T d1k3ia3 6 PGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRTVTVTKHDMFCPG 80 (387)
T ss_dssp TTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCEEEECSCCCSSCE
T ss_pred CCCCccCCcC---CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCC--CcEeecCCCCCCcccceeE
Confidence 5678999876 5666666666566689999999975431 1233478999998 7998764444555566677
Q ss_pred EEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEE
Q 048754 363 LSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLL 442 (625)
Q Consensus 363 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 442 (625)
.+...+++||++||.+. +++++||+.++ +|..++.+ |.+|.+|+++.+.++++|++||.......++++++|
T Consensus 81 ~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~--~w~~~~~~--~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDA----KKTSLYDSSSD--SWIPGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp EEECTTSCEEEECSSST----TCEEEEEGGGT--EEEECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred EEEecCCcEEEeecCCC----cceeEecCccC--cccccccc--cccccccceeeecCCceeeeccccccccccceeeee
Confidence 77777778999998764 56899999999 99999887 889999999998778999999988777788999999
Q ss_pred ecCCCCCceEEcCCCCCC-------------------------------------------------------------C
Q 048754 443 DLTTDKPMWREIPTSWSP-------------------------------------------------------------P 461 (625)
Q Consensus 443 d~~~~~~~W~~~~~~~~p-------------------------------------------------------------~ 461 (625)
|+.+++ |+.++....+ .
T Consensus 153 d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (387)
T d1k3ia3 153 SPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 230 (387)
T ss_dssp ETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred cCCCCc--eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcc
Confidence 987766 9877531110 0
Q ss_pred CCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCC---CCCceeEeeeccccCcCCCCCCCCCCccceEEEEe
Q 048754 462 SRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGD---EEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSM 537 (625)
Q Consensus 462 ~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~---~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 537 (625)
.+.++++... .++++|++||....... ........++... ....|..+.. +|.+|..|+++++
T Consensus 231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------~p~~r~~~~~~~~ 297 (387)
T d1k3ia3 231 AMCGNAVMYDAVKGKILTFGGSPDYQDS-DATTNAHIITLGEPGTSPNTVFASNG------------LYFARTFHTSVVL 297 (387)
T ss_dssp CBTCEEEEEETTTTEEEEECCBSSSSSS-BCCCCEEEEECCSTTSCCEEEECTTC------------CSSCCBSCEEEEC
T ss_pred cccccEEEeeccCCceEEEEeccCCCCC-cccceeecccccccccCCCceeeccc------------cccccccceeeec
Confidence 1111111111 23488999987653321 1123333444332 1234544443 4889999999999
Q ss_pred cCCEEEEEecCCCCC-----CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEE-CCcEEEEEcCcCCC--CCcc
Q 048754 538 PCGRIIIFGGSIAGL-----HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVV-GGTRVLVLGGHTGE--EWVL 609 (625)
Q Consensus 538 ~~~~l~v~GG~~~~~-----~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~-~~~~i~i~GG~~~~--~~~~ 609 (625)
.+++|||+||..... .....+++||+ ++++|+.+. .+|.+|.+|+++++ .|++|||+||.... ....
T Consensus 298 ~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp--~~~~W~~~~---~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~ 372 (387)
T d1k3ia3 298 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVP--EQDTFYKQN---PNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH 372 (387)
T ss_dssp TTSCEEEECCBSBCCTTCCCSBCCCCEEEEG--GGTEEEECC---CCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCC
T ss_pred cCCeEEEECCcccCccCCCCcEeceEEEEEC--CCCeEEECC---CCCCcccceEEEEECCCCEEEEEeCCCcCCCCccc
Confidence 888999999975322 22457899999 799999984 67889999987655 57799999995433 2246
Q ss_pred CceEEEEcc
Q 048754 610 NELHELCLA 618 (625)
Q Consensus 610 ~d~~~~~~~ 618 (625)
.++++|+..
T Consensus 373 ~~~e~y~Pp 381 (387)
T d1k3ia3 373 FDAQIFTPN 381 (387)
T ss_dssp CEEEEEECG
T ss_pred ceEEEEcch
Confidence 778999864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.89 E-value=3e-22 Score=203.13 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=174.7
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEE-ECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccce
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACA-AGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGH 361 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~ 361 (625)
..+||+.+++|...+.. ..|..+..++.+. .+++||++||.+. +++++||+.+ ++|..+ +.+|.+|.+|
T Consensus 54 ~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~--~~w~~~--~~~~~~r~~~ 123 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSS--DSWIPG--PDMQVARGYQ 123 (387)
T ss_dssp EEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGG--TEEEEC--CCCSSCCSSC
T ss_pred EEEEECCCCcEeecCCC-CCCcccceeEEEEecCCcEEEeecCCC-----cceeEecCcc--Cccccc--cccccccccc
Confidence 45799999999876532 1222233333333 4779999999653 4589999998 799976 7889999999
Q ss_pred eEEEEcCCEEEEEccCCC-CCccccEEEEECCCCCCEEEEcCCCCCC---------------------------------
Q 048754 362 TLSSLNGSWLVVFGGCGR-QGLLNDVFVLDLDAKQPTWIEVSGGAPP--------------------------------- 407 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~t~~~~W~~~~~~~~p--------------------------------- 407 (625)
+++++.++++|++||... ....+++++||+.++ +|..++....+
T Consensus 124 ~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~ 201 (387)
T d1k3ia3 124 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS 201 (387)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred ceeeecCCceeeeccccccccccceeeeecCCCC--ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc
Confidence 999987788999999754 446789999999999 99987643111
Q ss_pred ----------------------------CCCccceEEE-EcCCEEEEEcCcCCCCc--eeceEEEEe---cCCCCCceEE
Q 048754 408 ----------------------------LPRSWHSSCI-IEGSKLVVSGGCTDAGV--LLSDTYLLD---LTTDKPMWRE 453 (625)
Q Consensus 408 ----------------------------~~r~~~~~~~-~~~~~iyv~GG~~~~~~--~~~~~~~~d---~~~~~~~W~~ 453 (625)
.++.++++.. ..++++|++||...... .......++ .......|..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (387)
T d1k3ia3 202 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 281 (387)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceee
Confidence 0111111111 12458999999754332 122223333 2333334666
Q ss_pred cCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCc--ccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccc
Q 048754 454 IPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHL--RLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLD 531 (625)
Q Consensus 454 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~ 531 (625)
+.. +|.+|..|+++++.+++||++||....... ......+++||++ +.+|+.+..+ |.+|.+
T Consensus 282 ~~~--~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~--~~~W~~~~~~------------~~~R~~ 345 (387)
T d1k3ia3 282 SNG--LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDTFYKQNPN------------SIVRVY 345 (387)
T ss_dssp TTC--CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTEEEECCCC------------SSCCCT
T ss_pred ccc--cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC--CCeEEECCCC------------CCcccc
Confidence 654 889999999999977799999997643211 1234678999998 6799999866 789999
Q ss_pred eEEEE-ecCCEEEEEecCCCCC--CCCCcEEEEeC
Q 048754 532 HVAVS-MPCGRIIIFGGSIAGL--HSPSQLFLLDP 563 (625)
Q Consensus 532 ~~~~~-~~~~~l~v~GG~~~~~--~~~~~v~~~d~ 563 (625)
|++.+ ..+++|||+||...+. ....++.+|+|
T Consensus 346 Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P 380 (387)
T d1k3ia3 346 HSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380 (387)
T ss_dssp TEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred eEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence 97654 4578999999964332 23578999998
|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Putative blue light receptor, phot-lov1 domain species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.73 E-value=2.9e-17 Score=132.62 Aligned_cols=108 Identities=44% Similarity=0.745 Sum_probs=96.9
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELL 132 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 132 (625)
..++++++|+..++|+|+++|++|++++||+++|++|++...+.. |+..+.....+.+.+..++.+..|++
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~---------~~~~~~~~~~~~~~l~~~~~~~~e~~ 72 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQG---------EGTDPKEVQKIRDAIKKGEACSVRLL 72 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCC---------TTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeec---------ccCCHHHhhhhhhHhhcCCceeeeEE
Confidence 467899999644489999999999999999999999999877743 45667778888899999999999999
Q ss_pred EEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeec
Q 048754 133 NFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEA 169 (625)
Q Consensus 133 ~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~ 169 (625)
+++|||+.+|+.+++.|++|++|.+.+++++.+|||+
T Consensus 73 ~~~kdG~~~w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 73 NYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEecCCeEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence 9999999999999999999999999999999999994
|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Erg potassium channel, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.9e-15 Score=122.14 Aligned_cols=108 Identities=25% Similarity=0.381 Sum_probs=93.5
Q ss_pred eEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEe
Q 048754 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFK 135 (625)
Q Consensus 56 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 135 (625)
.++++|.-.++..|+++|++|++++||+++|++|++...++. .+|+..+.....+.+.+..+.++..+++.++
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~ 75 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFL-------HGPCTQRRAAAQIAQALLGAEERKVEIAFYR 75 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGG-------CCTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccc-------eeeheecccccccchhhcccccccceeeeee
Confidence 456777522377899999999999999999999998765432 2356667778888899999999999999999
Q ss_pred ecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 136 KDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 136 ~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
++|+.+|+.+++.|++|++|++++++++++|||||
T Consensus 76 ~~g~~~w~~~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 76 KDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp TTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred cccceeeeeeeEEEEECCCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999986
|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Photoreceptor phy3 flavin-binding domain, lov2 species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]
Probab=99.64 E-value=1.7e-15 Score=121.10 Aligned_cols=103 Identities=39% Similarity=0.590 Sum_probs=93.6
Q ss_pred eEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEEEe
Q 048754 56 SFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFK 135 (625)
Q Consensus 56 ~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 135 (625)
.++++|+..++|+|+++|++|++++||+++|++|++..++.. |...+.....+...+..+..+..|++.++
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 72 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQG---------RGTDRKAVQLIRDAVKEQRDVTVQVLNYT 72 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCC---------TTSCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccc---------cccchHHHhhhhhhhhcCceeEeEEEEEe
Confidence 467888655689999999999999999999999999877753 45677888888899999999999999999
Q ss_pred ecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 136 KDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 136 ~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
+||+.+|+.+++.|++|++|++.+++++.+||
T Consensus 73 ~dg~~~~~~~~~~pi~d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 73 KGGRAFWNLFHLQVMRDENGDVQYFIGVQQEM 104 (104)
T ss_dssp TTSCEEEEEEEEEEECTTTSSCCEEEEEEEEC
T ss_pred cccceEEEEEEEEEEECCCCCEEEEEEEEEcC
Confidence 99999999999999999999999999999997
|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Hypoxia-inducible factor Hif2a, C-terminal domain domain: Hypoxia-inducible factor Hif2a, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=7e-14 Score=113.53 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=90.4
Q ss_pred CeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEEEEEE
Q 048754 54 PTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLN 133 (625)
Q Consensus 54 ~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 133 (625)
.+-|...|. +|+|+++|+++++++||+++|++|++..++. ||++.+...+.+...+..+..+..++++
T Consensus 6 ~~fi~r~~~---dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~---------~~ed~~~~~~~~~~~~~~~~~~~~e~~~ 73 (114)
T d1p97a_ 6 KTFLSRHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFY---------HALDSENMTKSHQNLCTKGQVVSGQYRM 73 (114)
T ss_dssp EEEEEEECT---TTSCSEECTTHHHHTSSCHHHHTTSCHHHHS---------CSSSHHHHHHHHHHHTTTSEEEEEEEEE
T ss_pred CEEEEEECC---CCcEEEECHHHHHHcCCCccccccccccccc---------cccccccceeeeeecccccceeecceee
Confidence 344555688 9999999999999999999999999887764 4556566556666666667777889999
Q ss_pred EeecCcceeEEEEEEEeeCC-CCCEEEEEEEEEeeecccc
Q 048754 134 FKKDGTPLVNRLRLAPIRDD-DGTVTHIIGIQIFSEAKID 172 (625)
Q Consensus 134 ~~~dG~~~~~~~~~~~~~d~-~g~~~~~i~~~~Dit~~~~ 172 (625)
+++||+.+|+.+...|+.+. +|.+..++++.+|||++|+
T Consensus 74 ~~kdG~~~wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 74 LAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp ECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred eeecCcceEEEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence 99999999999999999986 6899999999999999985
|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Rhizobium meliloti [TaxId: 382]
Probab=99.35 E-value=7.5e-13 Score=110.17 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=83.7
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+++++. ++++|+++|. +|+|+++|+++++++||++++++|++...+..+ .........+.+.+..+
T Consensus 19 ~~i~~~--~~~~i~~~d~---~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 84 (130)
T d1ew0a_ 19 RSILDT--VPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPE---------PYRHEHDGYLQRYMATG 84 (130)
T ss_dssp HHHHTT--CSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCT---------TTGGGHHHHHHHHHHHC
T ss_pred HHHHHc--CCCeEEEEeC---CccEEEEHHHHHHhhcCCHHHhcCCcccccccc---------chhHHHHHHHHHHHHhC
Confidence 344444 9999999999 999999999999999999999999998777542 22333334444445444
Q ss_pred cc----eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 125 IE----FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 125 ~~----~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.. ...++...++||+.+|+.+++.|+.+.++ ..++++++|||
T Consensus 85 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rDIT 130 (130)
T d1ew0a_ 85 EKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp CCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred CCccccceeeEEEEcCCCCEEEEEEEEEEEEECCe--EEEEEEEEECC
Confidence 32 45688889999999999999999987544 45889999997
|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.32 E-value=2.3e-12 Score=102.73 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=78.2
Q ss_pred eeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC----cceEEE
Q 048754 55 TSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG----IEFQGE 130 (625)
Q Consensus 55 ~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~e 130 (625)
++|+++|. +|+|+++|+++++++||+++|++|++...+.+ |.........+...+... .....+
T Consensus 1 dgi~~~D~---~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e 68 (106)
T d1xj3a1 1 DAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMP---------EPDRSRHDSYISRYRTTSDPHIIGIGRI 68 (106)
T ss_dssp CCEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSC---------TTHHHHHHHHHHHHHHHCCCSSTTTCEE
T ss_pred CEEEEECC---CCcEEEEcHHHHHHhhhchHhhcCCCcccccc---------cccccchhhhhhhhhhhcccccccccce
Confidence 58999999 99999999999999999999999998877753 222233333333333322 234567
Q ss_pred EEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeeecc
Q 048754 131 LLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSEAK 170 (625)
Q Consensus 131 ~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit~~ 170 (625)
...+++||+.+|+.+++.|+.+.++ ..++++++||||.
T Consensus 69 ~~~~~~dg~~~~v~~~~~~~~~~~~--~~~~~~~~DITE~ 106 (106)
T d1xj3a1 69 VTGKRRDGTTFPMHLSIGEMQSGGE--PYFTGFVRDLTEH 106 (106)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECHHH
T ss_pred eeeeeccceEEEEEEEEEEEEECCe--EEEEEEEEeCCCC
Confidence 8889999999999999999987554 4688999999973
|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Direct oxygen sensor protein, DOS species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=5.4e-12 Score=101.89 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHH----hCcc
Q 048754 51 PTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLE----EGIE 126 (625)
Q Consensus 51 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 126 (625)
++++++|+++|. +|+|+++|+++++++||+++|++|++...+.+. .........+...+. ....
T Consensus 8 e~~~d~i~~~d~---~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 75 (113)
T d1v9ya_ 8 EQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPR---------DLRPAHPEYIRHNREGGKARVEG 75 (113)
T ss_dssp HTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCG---------GGTTTHHHHHHHHHC--------
T ss_pred HcCcCcEEEEeC---CCCEEEEchhHhhhhccchhhhcCcceeccccc---------ccccccccccccccccccccccc
Confidence 348999999999 999999999999999999999999988766431 122222222222222 2223
Q ss_pred eEEEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEe
Q 048754 127 FQGELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIF 166 (625)
Q Consensus 127 ~~~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~D 166 (625)
...|...+++||+.+|+++++.|+.++++ ..++++++|
T Consensus 76 ~~~e~~~~~~dG~~~~v~~~~~~i~~~~~--~~~~~v~rD 113 (113)
T d1v9ya_ 76 MSRELQLEKKDGSKIWTRFALSKVSAEGK--VYYLALVRD 113 (113)
T ss_dssp --CEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEC
T ss_pred cceeeeeccccceeEEEEEEEEEEEECCe--EEEEEEEEC
Confidence 44577889999999999999999997654 347888876
|
| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PYP-like domain: Photoactive yellow protein, PYP species: Ectothiorhodospira halophila [TaxId: 1053]
Probab=99.11 E-value=2.2e-10 Score=93.67 Aligned_cols=103 Identities=14% Similarity=0.004 Sum_probs=78.6
Q ss_pred cCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCcceEE
Q 048754 50 YPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQG 129 (625)
Q Consensus 50 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.++.+++|+++|. +|+|+++|+++++++||++++++|++..+++.|. ...+.....+.+.+.++.....
T Consensus 23 ld~~p~gi~~lD~---~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~--------~~~~~~~~~~~~~~~~g~~~~~ 91 (125)
T d1nwza_ 23 LDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC--------TDSPEFYGKFKEGVASGNLNTM 91 (125)
T ss_dssp HTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHHTCCEEE
T ss_pred HhCCCccEEEEeC---CCCEEEEcHHHHHhhccchHhhcCCCHHHccCch--------hhhhheeeeceeeeecCCcceE
Confidence 4449999999999 9999999999999999999999999876654321 2334455667777778877666
Q ss_pred EEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEee
Q 048754 130 ELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFS 167 (625)
Q Consensus 130 e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Di 167 (625)
+....+++|+.+|+.+.+.+..+. .- +..+++||
T Consensus 92 ~~~~~~~~G~~~~v~v~l~~~~~g--~~--~~v~V~di 125 (125)
T d1nwza_ 92 FEYTFDYQMTPTKVKVHMKKALSG--DS--YWVFVKRV 125 (125)
T ss_dssp EEEEECTTSCCEEEEEEEEECSSS--SE--EEEEEEEC
T ss_pred EEEEeccCCcEEEEEEEEEEecCC--CE--EEEEEEEC
Confidence 666788899999999998887653 32 23455664
|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PYP-like domain: PYP domain of sensor histidine kinase Ppr species: Rhodospirillum centenum [TaxId: 34018]
Probab=99.09 E-value=5.6e-10 Score=88.77 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=73.4
Q ss_pred ccccccCCCCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhC
Q 048754 45 PGLLFYPTTPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEG 124 (625)
Q Consensus 45 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (625)
+++++. .+++|+++|. +|+|+++|+++++|+||+++|++|++..+++.|. ...+.....+.+.+.++
T Consensus 6 ~A~ld~--~p~gvi~~D~---~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~--------~~~~~~~~~~~~~~~~g 72 (110)
T d1mzua_ 6 TAEFDA--LPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC--------TNIPAFSGRFMDGVTSG 72 (110)
T ss_dssp CTTGGG--CSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG--------GCSTTTHHHHHHHHHTS
T ss_pred HHHHhC--CCcEEEEEcC---CCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCCh--------hhhHHHHHHHHHHHhcc
Confidence 455555 9999999999 9999999999999999999999999976554321 23445566777778877
Q ss_pred cceEEEEEEEeecCcceeEEEEEEEeeC
Q 048754 125 IEFQGELLNFKKDGTPLVNRLRLAPIRD 152 (625)
Q Consensus 125 ~~~~~e~~~~~~dG~~~~~~~~~~~~~d 152 (625)
..........+++|..+++++.+.+..+
T Consensus 73 ~~~~~~~~~l~~~G~~~~v~v~~~~~~~ 100 (110)
T d1mzua_ 73 TLDARFDFVFDFQMAPVRVQIRMQNAGV 100 (110)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEEEECSS
T ss_pred ccCcceEEEEecCCceEEEEEEEEEecC
Confidence 6544433445789999999999888764
|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: N-terminal PAS domain of Pas kinase domain: N-terminal PAS domain of Pas kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3.1e-10 Score=91.31 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCeeEEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCcccccCCcccccCCCCCChHHHHHHHHHHHhCc----ceE
Q 048754 53 TPTSFVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGI----EFQ 128 (625)
Q Consensus 53 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 128 (625)
..++|+++|. .+|+|+++|+++++++||+++|++|++..+|.+++ ........+...+..+. ...
T Consensus 7 ~n~AI~~id~--~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 75 (114)
T d1ll8a_ 7 FNKAIFTVDA--KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRS---------DSDVVEALSEEHMEADGHAAVVFG 75 (114)
T ss_dssp TTCEEEEEET--TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCT---------TTHHHHHTTSSTTSSSSCSSCCCS
T ss_pred cCcEEEEEEC--CCCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcc---------cHHHHHHHHHHHHhcCCCccceee
Confidence 6788999994 16999999999999999999999999998886422 22222222222333222 122
Q ss_pred EEEEEEeecCcceeEEEEEEEeeCCCCCEEEEEEEEEeee
Q 048754 129 GELLNFKKDGTPLVNRLRLAPIRDDDGTVTHIIGIQIFSE 168 (625)
Q Consensus 129 ~e~~~~~~dG~~~~~~~~~~~~~d~~g~~~~~i~~~~Dit 168 (625)
.++..++++|+.+|+++++.++..++ .. .++++++||+
T Consensus 76 ~e~~~~~~~G~~~pvevs~~~i~~~~-~~-~~l~vi~dV~ 113 (114)
T d1ll8a_ 76 TVVDIISRSGEKIPVSVWMKRMRQER-RL-CCVVVLEPVE 113 (114)
T ss_dssp SSEEECCTTCCCEEEECCEECCBSSS-SB-EEEEEEEECC
T ss_pred EEEEEEccCCcEEEEEEEEEEEEECC-eE-EEEEEEEECc
Confidence 36778899999999999999987644 43 4789999994
|
| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PAS domain of steroid receptor coactivator 1A, NCo-A1 domain: PAS domain of steroid receptor coactivator 1A, NCo-A1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.67 E-value=1.4e-08 Score=80.13 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=71.3
Q ss_pred EEecCCCCCCCEEEEehHHHHHhCCCc-hhhcCCCCcccccCCcccccCCCCCChHH--HHHHHHHHHhCcceEEEEEEE
Q 048754 58 VVADAFDPDFPIIYVNKVFEIFTGYRA-DEVLGRNCRFLQYRDPRAQRRHPLVDPVV--VSEIRRCLEEGIEFQGELLNF 134 (625)
Q Consensus 58 ~~~d~~~~~g~i~~~N~~~~~~~G~~~-~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~ 134 (625)
.-.|. +|+++++|++..+++||.+ +|++|++..++. ||++.+.. .......+..+.....+++++
T Consensus 6 trh~~---~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~---------HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~ 73 (109)
T d1oj5a_ 6 TKQDT---TGKIISIDTSSLRAAGRTGWEDLVRKCIYAFF---------QPQGREPSYARQLFQEVMTRGTASSPSYRFI 73 (109)
T ss_dssp EEECT---TCCEEEEECHHHHTTCCSCHHHHHHHHHHHHT---------SCBTTBCCHHHHHHHHHHHHSEEECCCEEEE
T ss_pred EEECC---CceEEEECHHHhhHhhcCCHHHHcCCcHHHeE---------CcccchHHHhhHHHHHHHhhcccchhhhhhh
Confidence 34566 9999999999999999985 899999998885 56565432 233455667888888899999
Q ss_pred eecCcceeEEEEEEEeeCCCCC-EEEEEEE
Q 048754 135 KKDGTPLVNRLRLAPIRDDDGT-VTHIIGI 163 (625)
Q Consensus 135 ~~dG~~~~~~~~~~~~~d~~g~-~~~~i~~ 163 (625)
+|||+..|+..+..++.+..+. +..++++
T Consensus 74 ~kdG~~vWv~t~~~~~~~~~~~~~~~Ii~~ 103 (109)
T d1oj5a_ 74 LNDGTMLSAHTRCKLCYPQSPDMQPFIMGI 103 (109)
T ss_dssp CTTSCEEEEEEEEEEECC----CCCEEEEE
T ss_pred hccCcEEEEEEEEEEEECCCCCcccEEEEE
Confidence 9999999999999999887554 4344444
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.00021 Score=43.74 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=35.9
Q ss_pred cCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHH
Q 048754 214 QLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVR 253 (625)
Q Consensus 214 g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (625)
.+|+|++ ..++..+++.++.+++.+||+|+.++.++.+|
T Consensus 3 ~LP~eil-~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 3 SLPDELL-LGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp SSCHHHH-HHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred cCCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 5788998 89999999999999999999999999988765
|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Rhizobium meliloti [TaxId: 382]
Probab=96.81 E-value=8.9e-05 Score=59.74 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=46.4
Q ss_pred hhhhhhccccccccc---cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHHH
Q 048754 180 VFKENCNQQYDQSAQ---YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRRI 243 (625)
Q Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (625)
..+++++..+++... ++|.++.++++|+++++++||+ ++++|.++..++++.+........+++
T Consensus 13 ~~e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T d1ew0a_ 13 ARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRY 80 (130)
T ss_dssp HHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHHHH
Confidence 444556655544443 4477778889999999999999 889988888888887766555444443
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0013 Score=50.00 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=45.8
Q ss_pred cccccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhcc
Q 048754 210 CGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAW 261 (625)
Q Consensus 210 ~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (625)
..+..+|+|++ ..|+..+++.++..+..+||+|+.++.+..+|+..|...|
T Consensus 17 D~i~~LP~Eil-~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~ 67 (102)
T d2ovrb1 17 DFISLLPKELA-LYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67 (102)
T ss_dssp STTTSSCHHHH-HHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred CChhhCCHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence 34567899999 8999999999999999999999999999999999887654
|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Hypoxia-inducible factor Hif2a, C-terminal domain domain: Hypoxia-inducible factor Hif2a, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0021 Score=49.81 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=37.2
Q ss_pred cCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhH
Q 048754 197 SGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSV 239 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~ 239 (625)
+.++.++|+|++++.++||+ +|++|..+..+++|++...+...
T Consensus 13 ~~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~ 56 (114)
T d1p97a_ 13 SMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKS 56 (114)
T ss_dssp CTTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHH
T ss_pred CCCCcEEEECHHHHHHcCCCccccccccccccccccccccceee
Confidence 67788889999999999999 88999999999999987766443
|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PYP-like domain: PYP domain of sensor histidine kinase Ppr species: Rhodospirillum centenum [TaxId: 34018]
Probab=95.54 E-value=0.0011 Score=51.25 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=35.2
Q ss_pred ccccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 190 DQSAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 190 ~~~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
.....++|.+..++++|+++++|+||+ +|++|+++++.+.|+.
T Consensus 13 p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~ 56 (110)
T d1mzua_ 13 PVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCT 56 (110)
T ss_dssp SSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred CcEEEEEcCCCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChh
Confidence 344445688888889999999999999 9999999988777643
|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: N-terminal PAS domain of Pas kinase domain: N-terminal PAS domain of Pas kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.00086 Score=52.22 Aligned_cols=48 Identities=13% Similarity=0.327 Sum_probs=38.4
Q ss_pred cccccccccC-CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 189 YDQSAQYFSG-GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 189 ~~~~~~~~~~-~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
+++++.+++. .+.++++|+++++++||+ +|++|.++.+++++++...+
T Consensus 7 ~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~ 56 (114)
T d1ll8a_ 7 FNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVV 56 (114)
T ss_dssp TTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHH
T ss_pred cCcEEEEEECCCCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHH
Confidence 4555666674 456779999999999999 99999999999988775544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.48 E-value=0.65 Score=46.37 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=78.0
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC-----CCC-CccceeEEEEcCCEEEEEccCCCCCc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS-----SPP-GRWGHTLSSLNGSWLVVFGGCGRQGL 382 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~-----~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~ 382 (625)
.+-+++++.||+..+. +.++++|..+-...|+.-.... ... .......+.. +++||+....
T Consensus 60 stPiv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~----- 126 (560)
T d1kv9a2 60 ATPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLD----- 126 (560)
T ss_dssp CCCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTT-----
T ss_pred eCCEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeCC-----
Confidence 5567889999988753 2489999988778898421100 011 1112223333 5567666431
Q ss_pred cccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
..++.+|..+++..|..-.....+......+..+. ++.+|+ |+..........+..||..|.+..|+.-.
T Consensus 127 -g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~-~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 127 -GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVII-GNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp -SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred -CEEEEEECCCCcEEeccCccCcccceeeeeeeeee-cCcccc-cccceeccccceEEEEECCCceEEeeeee
Confidence 35899999999888986543322222222233344 545555 44333333445799999999999998654
|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Putative blue light receptor, phot-lov1 domain species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=95.44 E-value=0.0011 Score=51.07 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.4
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhcccCchhh
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDV 233 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~ 233 (625)
+..++|+|+++++++||+ +|++|.++..+.++++.
T Consensus 15 dg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~ 50 (109)
T d1n9la_ 15 DCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTD 50 (109)
T ss_dssp TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCC
T ss_pred CCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCC
Confidence 567889999999999999 89999888777766543
|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Histidine kinase FixL heme domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=95.36 E-value=0.0025 Score=48.40 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=37.9
Q ss_pred cccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHHHH
Q 048754 195 YFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVCRR 242 (625)
Q Consensus 195 ~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 242 (625)
++|.++.++++|+++++++||+ +|++|.++..++++.+..........
T Consensus 5 ~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~ 53 (106)
T d1xj3a1 5 VIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISR 53 (106)
T ss_dssp EEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHH
T ss_pred EECCCCcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhh
Confidence 4477777889999999999999 88999889888888776655444433
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.0042 Score=46.70 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=41.6
Q ss_pred cccCchhHHHHhhhcccCchhhhhHHhHHHHHHHhhc-chhHHhhhhhhc
Q 048754 212 ILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTK-NEHVRKMVCQNA 260 (625)
Q Consensus 212 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 260 (625)
+..+|+|++ ..|+..+++.++..+..+|++|+.++. +..+|+..+...
T Consensus 6 ~~~LP~Ell-~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~ 54 (100)
T d1nexb1 6 ITSLPFEIS-LKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE 54 (100)
T ss_dssp HHHSCHHHH-HHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred hhhCCHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 457899998 899999999999999999999999875 578899877654
|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Heme-binding PAS domain domain: Direct oxygen sensor protein, DOS species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0037 Score=48.02 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=37.8
Q ss_pred ccccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhHHhHH
Q 048754 192 SAQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASIGSVC 240 (625)
Q Consensus 192 ~~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~~~~~ 240 (625)
...++|.+..++++|+++++++||+ +|++|.++...+++.+........
T Consensus 13 ~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~ 62 (113)
T d1v9ya_ 13 GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYI 62 (113)
T ss_dssp EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHH
T ss_pred cEEEEeCCCCEEEEchhHhhhhccchhhhcCcceeccccccccccccccc
Confidence 3345588878889999999999999 889998888888776655443333
|
| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PYP-like domain: Photoactive yellow protein, PYP species: Ectothiorhodospira halophila [TaxId: 1053]
Probab=94.55 E-value=0.0025 Score=50.37 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=33.8
Q ss_pred cccccCCCCCCcccccccccccCc-hhHHHHhhhcccCchh
Q 048754 193 AQYFSGGHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRD 232 (625)
Q Consensus 193 ~~~~~~~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~ 232 (625)
..++|.++.++++|+++++++|++ ++++|.++++.++|++
T Consensus 30 i~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~ 70 (125)
T d1nwza_ 30 AIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCT 70 (125)
T ss_dssp EEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG
T ss_pred EEEEeCCCCEEEEcHHHHHhhccchHhhcCCCHHHccCchh
Confidence 445588888889999999999999 8899999988887643
|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: BphP N-terminal domain-like domain: Sensor protein PhyB2 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.50 E-value=0.017 Score=44.34 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred EEEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 57 FVVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 57 i~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
++++|. .+++|++++++...++|+++++++|++..+++.
T Consensus 20 Llvld~--~d~~I~~vS~N~~~lLG~~~~~llG~~l~dll~ 58 (114)
T d2oola2 20 LFVVSE--TDLRIASVSANVEDLLRQPPASLLNVPIAHYLT 58 (114)
T ss_dssp EEEECT--TTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBC
T ss_pred EEEEEC--CCCEEEEEcCCHHHHhCCChHHHcCCCHHHhCC
Confidence 344553 279999999999999999999999999988863
|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Photoreceptor phy3 flavin-binding domain, lov2 species: Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]
Probab=94.50 E-value=0.0053 Score=46.44 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhcccCchhhhhH
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRLTPRDVASI 236 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~~~~~~~~~ 236 (625)
+..++|+|+++|+++||+ +|++|.++..+.++++....
T Consensus 12 d~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~ 50 (104)
T d1jnua_ 12 DNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKA 50 (104)
T ss_dssp TCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHH
T ss_pred CCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHH
Confidence 566779999999999999 89999988888887665444
|
| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: PAS domain of steroid receptor coactivator 1A, NCo-A1 domain: PAS domain of steroid receptor coactivator 1A, NCo-A1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.0044 Score=47.49 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=33.7
Q ss_pred cCCCCCCcccccccccccCc--hhHHHHhhhcccCchhhh
Q 048754 197 SGGHSPLSQHQDICGILQLS--DEVLAHNILSRLTPRDVA 234 (625)
Q Consensus 197 ~~~~~~~~~n~~~~~~~g~~--~e~~~~~~~~~~~~~~~~ 234 (625)
+.+..++++|+++.+++||. +|++|..+.+++||+|..
T Consensus 9 ~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~ 48 (109)
T d1oj5a_ 9 DTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGRE 48 (109)
T ss_dssp CTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTB
T ss_pred CCCceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccch
Confidence 56677789999999999985 789999999999999965
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0089 Score=46.42 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=42.1
Q ss_pred cccCc----hhHHHHhhhcccCchhhhhHHhHHHHHHHhhcchhHHhhhhhhcc
Q 048754 212 ILQLS----DEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAW 261 (625)
Q Consensus 212 ~~g~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (625)
+..+| +|++ ..|+..+++.++..+..+||+|+.++.+..+|+..+...+
T Consensus 11 i~~LP~~l~~EI~-~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~ 63 (118)
T d1p22a1 11 ITALPARGLDHIA-ENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (118)
T ss_dssp HHHTGGGTCHHHH-HHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHCCCCChHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence 34555 4676 9999999999999999999999999999999998876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.08 E-value=3.2 Score=41.16 Aligned_cols=131 Identities=10% Similarity=0.045 Sum_probs=75.9
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCC------CCCCccceeEEEEcCCEEEEEccCCCCCc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKS------SPPGRWGHTLSSLNGSWLVVFGGCGRQGL 382 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~------~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 382 (625)
.+-+++++.||+.... +.++++|..+-+..|+.-.... ........+.+.. ++++|+...
T Consensus 71 stPiv~~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~------ 136 (573)
T d1kb0a2 71 ATPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAW------ 136 (573)
T ss_dssp CCCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECT------
T ss_pred ECCEEECCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEec------
Confidence 4456789999987653 3489999987767887421110 0011111223333 556776543
Q ss_pred cccEEEEECCCCCCEEEEcCC-CCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcC
Q 048754 383 LNDVFVLDLDAKQPTWIEVSG-GAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIP 455 (625)
Q Consensus 383 ~~~~~~~d~~t~~~~W~~~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~ 455 (625)
-..++.+|..|++..|+.-.. ..........+.+++ ++.+|+ |+..........+..||..+....|+.-.
T Consensus 137 ~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 137 DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVII-GNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred ccceeeeccccccceecccCccCCcceEEeecceEEE-eccEEE-eeccccccccceEEEEecCCccceeeeee
Confidence 135889999999888986432 211111112223344 545555 55433333456799999999998897643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.47 E-value=2.5 Score=37.80 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=32.2
Q ss_pred CeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCCCCEEE
Q 048754 333 DTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI 399 (625)
Q Consensus 333 ~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~ 399 (625)
.+.++|+.+.. .-..+.... ....-.+.+.. +++++|+.|+.+ +.+.+||..+++..+.
T Consensus 12 ~v~v~D~~s~~-~~~~i~~~~--~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 12 KLVVIDTEKMA-VDKVITIAD--AGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGR 71 (337)
T ss_dssp EEEEEETTTTE-EEEEEECTT--CTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCe-EEEEEECCC--CCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEE
Confidence 48999998731 122232111 11111223332 456788887643 3699999998844443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.38 E-value=3.4 Score=37.97 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+ ..+.+||+.+ .++..+..-....... .+++...+++.++.||.++ .+.++|+.++
T Consensus 18 dg~~la~~~~~------~~i~iw~~~~--~~~~~~~~l~gH~~~V-~~l~fsp~~~~l~s~s~D~-----~i~vWd~~~~ 83 (371)
T d1k8kc_ 18 DRTQIAICPNN------HEVHIYEKSG--NKWVQVHELKEHNGQV-TGVDWAPDSNRIVTCGTDR-----NAYVWTLKGR 83 (371)
T ss_dssp TSSEEEEECSS------SEEEEEEEET--TEEEEEEEEECCSSCE-EEEEEETTTTEEEEEETTS-----CEEEEEEETT
T ss_pred CCCEEEEEeCC------CEEEEEECCC--CCEEEEEEecCCCCCE-EEEEECCCCCEEEEEECCC-----eEEEEeeccc
Confidence 44566666542 2378888876 5666553111001011 1222223334555666432 5888888887
Q ss_pred CCEEEEcC
Q 048754 395 QPTWIEVS 402 (625)
Q Consensus 395 ~~~W~~~~ 402 (625)
.|....
T Consensus 84 --~~~~~~ 89 (371)
T d1k8kc_ 84 --TWKPTL 89 (371)
T ss_dssp --EEEEEE
T ss_pred --cccccc
Confidence 777553
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.01 E-value=4 Score=36.50 Aligned_cols=196 Identities=11% Similarity=0.027 Sum_probs=85.6
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.+++.|+.+. .+.+||+........... .. ..... .+++...+++.++.+|.+.. ..+.+++..+.
T Consensus 69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~~-~~-~~~~v-~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~ 136 (311)
T d1nr0a1 69 SGYYCASGDVHG------NVRIWDTTQTTHILKTTI-PV-FSGPV-KDISWDSESKRIAAVGEGRE---RFGHVFLFDTG 136 (311)
T ss_dssp TSSEEEEEETTS------EEEEEESSSTTCCEEEEE-EC-SSSCE-EEEEECTTSCEEEEEECCSS---CSEEEEETTTC
T ss_pred CCCeEeccccCc------eEeeeeeecccccccccc-cc-ccCcc-cccccccccccccccccccc---ccccccccccc
Confidence 455666776533 278888877432232211 11 11111 12222233445555553322 23566777665
Q ss_pred CCEEEEcCCCCCCCCCccceEEEE--cCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCII--EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG 472 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~ 472 (625)
+... .+.. .. ..-..+.+ +++.+++.|+.+ ..+.+||+.+.. -...... . ...-.++....
T Consensus 137 ~~~~-~l~~---h~--~~v~~v~~~~~~~~~l~sgs~d------~~i~i~d~~~~~--~~~~~~~-~--~~~i~~v~~~p 199 (311)
T d1nr0a1 137 TSNG-NLTG---QA--RAMNSVDFKPSRPFRIISGSDD------NTVAIFEGPPFK--FKSTFGE-H--TKFVHSVRYNP 199 (311)
T ss_dssp CBCB-CCCC---CS--SCEEEEEECSSSSCEEEEEETT------SCEEEEETTTBE--EEEEECC-C--SSCEEEEEECT
T ss_pred cccc-cccc---cc--cccccccccccceeeecccccc------cccccccccccc--ccccccc-c--cccccccccCc
Confidence 2111 1111 00 11112223 344456666532 257788875533 2111110 1 11112333333
Q ss_pred CcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCC-ccceEEEEe-cCCEEEEEecCCC
Q 048754 473 RTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPP-RLDHVAVSM-PCGRIIIFGGSIA 550 (625)
Q Consensus 473 ~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~-~~~~l~v~GG~~~ 550 (625)
++.+++.|+.+ ..+.+||+.+ ...+...... ...... ...-.++.+ .+++.++.||.+
T Consensus 200 ~~~~l~~~~~d---------~~v~~~d~~~----~~~~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~l~tgs~D- 259 (311)
T d1nr0a1 200 DGSLFASTGGD---------GTIVLYNGVD----GTKTGVFEDD------SLKNVAHSGSVFGLTWSPDGTKIASASAD- 259 (311)
T ss_dssp TSSEEEEEETT---------SCEEEEETTT----CCEEEECBCT------TSSSCSSSSCEEEEEECTTSSEEEEEETT-
T ss_pred ccccccccccc---------cccccccccc----cccccccccc------ccccccccccccccccCCCCCEEEEEeCC-
Confidence 44666666643 5677888873 2233333100 000000 011123333 356777777753
Q ss_pred CCCCCCcEEEEeCC
Q 048754 551 GLHSPSQLFLLDPS 564 (625)
Q Consensus 551 ~~~~~~~v~~~d~~ 564 (625)
..|.+||+.
T Consensus 260 -----g~v~iwd~~ 268 (311)
T d1nr0a1 260 -----KTIKIWNVA 268 (311)
T ss_dssp -----SEEEEEETT
T ss_pred -----CeEEEEECC
Confidence 368889983
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=3.7 Score=37.08 Aligned_cols=221 Identities=14% Similarity=0.064 Sum_probs=98.1
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++..++.|+.+. .+.+||+... +......-....+. -...+...++.+++.|+.. ..+..+|..++
T Consensus 108 dg~~l~s~~~dg------~i~iwd~~~~--~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~ 173 (337)
T d1gxra_ 108 DGCTLIVGGEAS------TLSIWDLAAP--TPRIKAELTSSAPA-CYALAISPDSKVCFSCCSD-----GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESSS------EEEEEECCCC----EEEEEEECSSSC-EEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred CCCEEEEeeccc------cccccccccc--cccccccccccccc-ccccccccccccccccccc-----ccccccccccc
Confidence 445556666532 2788887652 22221100111111 1222222344455555533 25888898877
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCc
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRT 474 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~ 474 (625)
+-...... ..... .+.+...++..++.|+.+ ..+.+||+.+... -.... ...+ -.+++...++
T Consensus 174 --~~~~~~~~--~~~~v-~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~-~~~~~---~~~~--i~~l~~~~~~ 236 (337)
T d1gxra_ 174 --TLVRQFQG--HTDGA-SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQ-LQQHD---FTSQ--IFSLGYCPTG 236 (337)
T ss_dssp --EEEEEECC--CSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTTTEE-EEEEE---CSSC--EEEEEECTTS
T ss_pred --cccccccc--ccccc-cccccccccccccccccc------cccccccccccee-ecccc---cccc--eEEEEEcccc
Confidence 43322211 11111 122222344556666532 3577888755431 11111 1111 1223333344
Q ss_pred EEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCC
Q 048754 475 KVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHS 554 (625)
Q Consensus 475 ~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~ 554 (625)
.+++.|+.+ ..+.++|+... .- .... ..... -.++....+++.++.|+.+
T Consensus 237 ~~l~~~~~d---------~~i~i~d~~~~--~~--~~~~-----------~~~~~-i~~v~~s~~g~~l~s~s~D----- 286 (337)
T d1gxra_ 237 EWLAVGMES---------SNVEVLHVNKP--DK--YQLH-----------LHESC-VLSLKFAYCGKWFVSTGKD----- 286 (337)
T ss_dssp SEEEEEETT---------SCEEEEETTSS--CE--EEEC-----------CCSSC-EEEEEECTTSSEEEEEETT-----
T ss_pred cccceeccc---------ccccccccccc--cc--cccc-----------ccccc-cceEEECCCCCEEEEEeCC-----
Confidence 566666543 56788888732 21 2111 01111 1122223466777777753
Q ss_pred CCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 555 PSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 555 ~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
..+.+||+. +. ..+...+. .. .-.++...+++++++.||.++
T Consensus 287 -g~i~iwd~~--~~--~~~~~~~~--~~-~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 287 -NLLNAWRTP--YG--ASIFQSKE--SS-SVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp -SEEEEEETT--TC--CEEEEEEC--SS-CEEEEEECTTSCEEEEEETTS
T ss_pred -CeEEEEECC--CC--CEEEEccC--CC-CEEEEEEeCCCCEEEEEeCCC
Confidence 468888884 22 22221111 11 112344445667888887654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.85 E-value=3.8 Score=35.95 Aligned_cols=101 Identities=8% Similarity=-0.007 Sum_probs=49.5
Q ss_pred ECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCC
Q 048754 471 YGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIA 550 (625)
Q Consensus 471 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 550 (625)
..++.+++.|+.+ ..+.+||+. +.+...+.... .... -.++....+++.++.|+.
T Consensus 145 s~~~~~l~~g~~d---------g~i~~~d~~--~~~~~~~~~~~-----------~~~~-i~~~~~~~~~~~l~~~~~-- 199 (299)
T d1nr0a2 145 SNDKQFVAVGGQD---------SKVHVYKLS--GASVSEVKTIV-----------HPAE-ITSVAFSNNGAFLVATDQ-- 199 (299)
T ss_dssp CTTSCEEEEEETT---------SEEEEEEEE--TTEEEEEEEEE-----------CSSC-EEEEEECTTSSEEEEEET--
T ss_pred ccccccccccccc---------ccccccccc--ccccccccccc-----------cccc-cccccccccccccccccc--
Confidence 3444677777653 567788887 33444433321 1111 122223335566677664
Q ss_pred CCCCCCcEEEEeCCCCCCCeEEEcCCCCCC-CCCCcceEEEECCcEEEEEcCcCC
Q 048754 551 GLHSPSQLFLLDPSEEKPSWRILNVPGQPP-KFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 551 ~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p-~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
...+..||+ .+....... .... ....-.++...+++.+++.||.++
T Consensus 200 ----d~~i~~~~~--~~~~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg 246 (299)
T d1nr0a2 200 ----SRKVIPYSV--ANNFELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDN 246 (299)
T ss_dssp ----TSCEEEEEG--GGTTEESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----ccccccccc--ccccccccc--ccccccccccccccccccccceEEEcCCC
Confidence 346889998 333332211 1111 111112333445678888888654
|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: Flavin-binding PAS domain domain: Erg potassium channel, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.024 Score=43.07 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCCCCcccccccccccCc-hhHHHHhhhccc
Q 048754 199 GHSPLSQHQDICGILQLS-DEVLAHNILSRL 228 (625)
Q Consensus 199 ~~~~~~~n~~~~~~~g~~-~e~~~~~~~~~~ 228 (625)
+..++|+|+++++++|++ +|++|.++...+
T Consensus 13 d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~ 43 (110)
T d1bywa_ 13 NCAVIYCNDGFCELCGYSRAEVMQRPCTCDF 43 (110)
T ss_dssp SCBEEEECHHHHHHHTCCHHHHTTSBTTCGG
T ss_pred CCEEEEEcHHHHHHhCCCHHHhcccCccccc
Confidence 456789999999999999 889988776543
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=3.5 Score=34.02 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=76.2
Q ss_pred ceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc----CCCCCCccceeEEEEcCCEEEEEccCCCCCcccc
Q 048754 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV----KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLND 385 (625)
Q Consensus 310 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~----~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 385 (625)
+++.+++.+|+|=|. .+|+++... ..+..... +++|. ....+.....++++|+|-| +.
T Consensus 13 Av~~~~g~~y~Fkg~--------~~wr~~~~~--~~~~p~~i~~~w~~lp~-~IDAAf~~~~~~~~yffkg-------~~ 74 (192)
T d1pexa_ 13 AITSLRGETMIFKDR--------FFWRLHPQQ--VDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRG-------RK 74 (192)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSS--SCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEET-------TE
T ss_pred EEEEcCCeEEEEECC--------EEEEEcCCC--CCCcccchhhhCcCCCC-cccceEEEcCCCEEEEEcC-------CE
Confidence 455678999999874 145555433 23332111 12232 2222222224678998887 35
Q ss_pred EEEEECCCCCCE-EEEcCCCCCCCCCcc-ceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCce---EEcCC--C
Q 048754 386 VFVLDLDAKQPT-WIEVSGGAPPLPRSW-HSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW---REIPT--S 457 (625)
Q Consensus 386 ~~~~d~~t~~~~-W~~~~~~~~p~~r~~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~--~ 457 (625)
.|+|+..+.... -..+.....|.+-.. -++... .++++|+|-| +..|.||..+..... ..+.. +
T Consensus 75 ~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg--------~~y~~y~~~~~~~~~~~pk~I~~~w~ 146 (192)
T d1pexa_ 75 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRLIEEDFP 146 (192)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC--------CEEEEEcCccccccCCCcEEHhhcCC
Confidence 788875443111 124443222222111 122232 4568999977 357889864432111 11111 1
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+.|.. -.++.. .++++|+|-| +..++||..
T Consensus 147 gvp~~--vdAa~~-~~g~~YfF~g-----------~~y~r~~~~ 176 (192)
T d1pexa_ 147 GIGDK--VDAVYE-KNGYIYFFNG-----------PIQFEYSIW 176 (192)
T ss_dssp TSCSC--CSEEEE-ETTEEEEEET-----------TEEEEEETT
T ss_pred CCCCC--ceEEEE-eCCEEEEEEC-----------CEEEEEeCC
Confidence 22322 123333 4559999965 688899876
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=91.02 E-value=5 Score=35.73 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
+++.++.++... .+.++|+.+.+ ....+. .|....-.+.+.. ++.++|+.+..+ +.+.+||+.+
T Consensus 7 ~~~~l~~~~~~~------~v~v~D~~t~~-~~~t~~---~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t 71 (346)
T d1jmxb_ 7 GHEYMIVTNYPN------NLHVVDVASDT-VYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDT 71 (346)
T ss_dssp TCEEEEEEETTT------EEEEEETTTTE-EEEEEE---CSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTT
T ss_pred CCcEEEEEcCCC------EEEEEECCCCC-EEEEEE---cCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCcc
Confidence 567777777533 39999998731 122222 1222222233433 456788887643 4689999988
Q ss_pred CCCEE
Q 048754 394 KQPTW 398 (625)
Q Consensus 394 ~~~~W 398 (625)
.+...
T Consensus 72 ~~~~~ 76 (346)
T d1jmxb_ 72 CKNTF 76 (346)
T ss_dssp TEEEE
T ss_pred Ceeee
Confidence 74333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=5.4 Score=35.81 Aligned_cols=180 Identities=18% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..++.|+.++ .+.+||+... +.............. ...+...++.+++.|+.. ..+..+++.+.
T Consensus 108 dg~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~ 173 (337)
T d1gxra_ 108 DGCTLIVGGEAS-----TLSIWDLAAP--TPRIKAELTSSAPAC-YALAISPDSKVCFSCCSD------GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESSS-----EEEEEECCCC----EEEEEEECSSSCE-EEEEECTTSSEEEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEeeccc-----cccccccccc--ccccccccccccccc-cccccccccccccccccc------ccccccccccc
Confidence 444666776543 5888898765 332221110011111 122222344455555422 25777887554
Q ss_pred CCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCC
Q 048754 448 KPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPP 527 (625)
Q Consensus 448 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~ 527 (625)
.. +..... ...+ -.++....++..+++|+.+ ..+.+||+.+. + .+.... .+.
T Consensus 174 ~~-~~~~~~--~~~~--v~~l~~s~~~~~~~~~~~d---------~~v~i~d~~~~--~--~~~~~~----------~~~ 225 (337)
T d1gxra_ 174 TL-VRQFQG--HTDG--ASCIDISNDGTKLWTGGLD---------NTVRSWDLREG--R--QLQQHD----------FTS 225 (337)
T ss_dssp EE-EEEECC--CSSC--EEEEEECTTSSEEEEEETT---------SEEEEEETTTT--E--EEEEEE----------CSS
T ss_pred cc-cccccc--cccc--ccccccccccccccccccc---------ccccccccccc--e--eecccc----------ccc
Confidence 31 222221 1111 1222232344566666543 56778888732 2 222220 011
Q ss_pred CccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEEEEcCcCC
Q 048754 528 PRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTG 604 (625)
Q Consensus 528 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~ 604 (625)
.-.++....+++.++.|+. ...+.+||+. +..-..... ... .-.++...+++.+++.||.++
T Consensus 226 --~i~~l~~~~~~~~l~~~~~------d~~i~i~d~~--~~~~~~~~~----~~~-~i~~v~~s~~g~~l~s~s~Dg 287 (337)
T d1gxra_ 226 --QIFSLGYCPTGEWLAVGME------SSNVEVLHVN--KPDKYQLHL----HES-CVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp --CEEEEEECTTSSEEEEEET------TSCEEEEETT--SSCEEEECC----CSS-CEEEEEECTTSSEEEEEETTS
T ss_pred --ceEEEEEcccccccceecc------cccccccccc--ccccccccc----ccc-ccceEEECCCCCEEEEEeCCC
Confidence 1122223335667777765 3467888883 333322211 111 112333344556777776543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.62 E-value=2.1 Score=42.42 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=73.8
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC------CCCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA------PPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~------~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+.++.||+... .+.++.+|..|++..|+.-+... ..........+.. ++++|+... + ..+
T Consensus 64 v~~g~vyv~t~------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~---~----g~l 129 (560)
T d1kv9a2 64 FHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTL---D----GRL 129 (560)
T ss_dssp EETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECT---T----SEE
T ss_pred EECCEEEEECC------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeC---C----CEE
Confidence 34678998765 35799999999999998543210 0111111223333 556766432 1 368
Q ss_pred EEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 440 YLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+.+|..+....|+.-............+.+++++ .+++ |+....... ...+..||..+....|+.-.
T Consensus 130 ~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~-~viv-g~~~~~~~~---~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVII-GNGGAEYGV---RGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEE-CCBCTTTCC---BCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCcEEeccCccCcccceeeeeeeeeecC-cccc-cccceeccc---cceEEEEECCCceEEeeeee
Confidence 8899988888898754321222222334445554 5554 443222211 35788999998777888654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=90.42 E-value=5.1 Score=34.85 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=36.3
Q ss_pred CEEEEEcccCCCCCCCCCeEEEeccCCCCceEE-cccCCCCCCccceeEEEE-cCCEEEEEccCCCCCccccEEEEECCC
Q 048754 316 NRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRR-VSVKSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDA 393 (625)
Q Consensus 316 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t 393 (625)
.++||.+..+. .+.++|+.+ .+... ++.. ..| +.++.. +++++|+.++.+ +.+.+||..+
T Consensus 2 ~~~yV~~~~~~------~v~v~D~~t--~~~~~~i~~g--~~p---~~va~spdG~~l~v~~~~~-----~~i~v~d~~t 63 (301)
T d1l0qa2 2 TFAYIANSESD------NISVIDVTS--NKVTATIPVG--SNP---MGAVISPDGTKVYVANAHS-----NDVSIIDTAT 63 (301)
T ss_dssp EEEEEEETTTT------EEEEEETTT--TEEEEEEECS--SSE---EEEEECTTSSEEEEEEGGG-----TEEEEEETTT
T ss_pred eEEEEEECCCC------EEEEEECCC--CeEEEEEECC--CCc---eEEEEeCCCCEEEEEECCC-----CEEEEEECCC
Confidence 36788765422 388999987 44432 2111 111 333333 456788877633 4699999988
Q ss_pred C
Q 048754 394 K 394 (625)
Q Consensus 394 ~ 394 (625)
+
T Consensus 64 ~ 64 (301)
T d1l0qa2 64 N 64 (301)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.30 E-value=7.7 Score=38.25 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred EcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCC------CCCCccceEEEEcCCEEEEEcCcCCCCceeceE
Q 048754 366 LNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAP------PLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDT 439 (625)
Q Consensus 366 ~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~------p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 439 (625)
+.+++||+... .+.++.+|..|++..|+.-+.... .........+.. ++++|+... -..+
T Consensus 75 v~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~-------~g~l 140 (573)
T d1kb0a2 75 VVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAW-------DGRL 140 (573)
T ss_dssp EETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECT-------TSEE
T ss_pred EECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEec-------ccce
Confidence 33678998754 356999999999888985432100 011111223334 557776421 1368
Q ss_pred EEEecCCCCCceEEcCCCCCC-CCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEee
Q 048754 440 YLLDLTTDKPMWREIPTSWSP-PSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLE 511 (625)
Q Consensus 440 ~~~d~~~~~~~W~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 511 (625)
+.+|..+....|+.-...... ......+.+++++ .++ +|+....... ...+..||..+....|+.-.
T Consensus 141 ~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~vi-vg~~~~~~~~---~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVI-IGNGGAEYGV---RGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEE-ECCBCTTTCC---BCEEEEEETTTCCEEEEEES
T ss_pred eeeccccccceecccCccCCcceEEeecceEEEec-cEE-Eeeccccccc---cceEEEEecCCccceeeeee
Confidence 889998888889864321111 1112233445554 554 4544332221 36788999998777887543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.12 E-value=4.3 Score=37.25 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=37.2
Q ss_pred CCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCC
Q 048754 368 GSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTD 447 (625)
Q Consensus 368 ~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 447 (625)
++..+++|+.+ ..+.+||..++ ++..+.....- ...-.+.+...++++++.||.+ ..+.++|+.+.
T Consensus 18 dg~~la~~~~~-----~~i~iw~~~~~--~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~ 83 (371)
T d1k8kc_ 18 DRTQIAICPNN-----HEVHIYEKSGN--KWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGR 83 (371)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETT--EEEEEEEEECC-SSCEEEEEEETTTTEEEEEETT------SCEEEEEEETT
T ss_pred CCCEEEEEeCC-----CEEEEEECCCC--CEEEEEEecCC-CCCEEEEEECCCCCEEEEEECC------CeEEEEeeccc
Confidence 34466666643 35888998887 77655421100 0111222233344566666642 25777787665
Q ss_pred CCceEEc
Q 048754 448 KPMWREI 454 (625)
Q Consensus 448 ~~~W~~~ 454 (625)
. |...
T Consensus 84 ~--~~~~ 88 (371)
T d1k8kc_ 84 T--WKPT 88 (371)
T ss_dssp E--EEEE
T ss_pred c--cccc
Confidence 5 6644
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.77 E-value=2.6 Score=37.09 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=53.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCC
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTT 446 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 446 (625)
.++..++.|+.+ ..+.+||+.+. +...+.....+ ... .+.+...++..++.|+.+ ..+.+||+.+
T Consensus 146 ~~~~~l~~g~~d-----g~i~~~d~~~~--~~~~~~~~~~~-~~i-~~~~~~~~~~~l~~~~~d------~~i~~~~~~~ 210 (299)
T d1nr0a2 146 NDKQFVAVGGQD-----SKVHVYKLSGA--SVSEVKTIVHP-AEI-TSVAFSNNGAFLVATDQS------RKVIPYSVAN 210 (299)
T ss_dssp TTSCEEEEEETT-----SEEEEEEEETT--EEEEEEEEECS-SCE-EEEEECTTSSEEEEEETT------SCEEEEEGGG
T ss_pred cccccccccccc-----ccccccccccc--ccccccccccc-ccc-cccccccccccccccccc------cccccccccc
Confidence 344567777754 35888898877 54433221101 111 122222333455555532 2578899765
Q ss_pred CCCceEEcCCCCCCCCCCc-ceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCC
Q 048754 447 DKPMWREIPTSWSPPSRLG-HSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGD 502 (625)
Q Consensus 447 ~~~~W~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~ 502 (625)
.. ....... ....... .+++...++.+++.|+.+ ..+.+||+.+
T Consensus 211 ~~--~~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~d---------g~i~iwd~~~ 255 (299)
T d1nr0a2 211 NF--ELAHTNS-WTFHTAKVACVSWSPDNVRLATGSLD---------NSVIVWNMNK 255 (299)
T ss_dssp TT--EESCCCC-CCCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTC
T ss_pred cc--ccccccc-ccccccccccccccccccceEEEcCC---------CEEEEEECCC
Confidence 43 2221110 1111111 223333455777777754 5678899874
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=89.71 E-value=5.8 Score=34.44 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=45.2
Q ss_pred eeeeecccCeeEEeeecCCCCCCCcccceEEE--CCEEEEEcccCCCCCCCCCeEEEeccCCCCceE-EcccCCCCCCcc
Q 048754 283 RELTTLEAVCWRKFTVRGAVEPSRCNFSACAA--GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWR-RVSVKSSPPGRW 359 (625)
Q Consensus 283 ~~~~~~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~~~p~~r~ 359 (625)
-.++|+.+++...--..+..| +..+.. +++||+.++.+. .+.+||+.+. +-. .+. ....
T Consensus 14 v~v~D~~t~~~~~~i~~g~~p-----~~va~spdG~~l~v~~~~~~------~i~v~d~~t~--~~~~~~~-----~~~~ 75 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVGSNP-----MGAVISPDGTKVYVANAHSN------DVSIIDTATN--NVIATVP-----AGSS 75 (301)
T ss_dssp EEEEETTTTEEEEEEECSSSE-----EEEEECTTSSEEEEEEGGGT------EEEEEETTTT--EEEEEEE-----CSSS
T ss_pred EEEEECCCCeEEEEEECCCCc-----eEEEEeCCCCEEEEEECCCC------EEEEEECCCC--ceeeeee-----cccc
Confidence 356787777665432222211 233332 467888776432 3899998763 221 121 1111
Q ss_pred ceeEEEE-cCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 360 GHTLSSL-NGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 360 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
-+.++.. +++.+++.+..+ ..+.++|..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 106 (301)
T d1l0qa2 76 PQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSN 106 (301)
T ss_dssp EEEEEECTTSSEEEEEETTT-----TEEEEEETTTT
T ss_pred cccccccccccccccccccc-----ceeeecccccc
Confidence 2333333 344555554422 35677888777
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.18 E-value=7.9 Score=38.24 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=71.7
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc-CCCCCCc---cceeEEEEcCCEEEEEccCCCCCccc
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV-KSSPPGR---WGHTLSSLNGSWLVVFGGCGRQGLLN 384 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~~~p~~r---~~~~~~~~~~~~iyv~GG~~~~~~~~ 384 (625)
.+-+++++.||+.... +.++.+|..+-+..|+.-.. +....+. ..-+.+ +.+++||+... -.
T Consensus 62 stPiv~~g~vy~~t~~-------~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a-~~~~~i~~~t~------~~ 127 (582)
T d1flga_ 62 SQAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA-IYGDKVFFGTL------DA 127 (582)
T ss_dssp CCCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE-EETTEEEEEET------TT
T ss_pred cCCEEECCEEEEeCCC-------CeEEEEeCCCCCeEEEEcCCCCCccccccccccCCce-EeCCceEEecC------CC
Confidence 4567889999997653 34899999887778874211 1111111 111222 33567776432 23
Q ss_pred cEEEEECCCCCCEEEEcCCCCCC-CCCccceEEEEcC--CEEEEEcCcCC-CCceeceEEEEecCCCCCceEEc
Q 048754 385 DVFVLDLDAKQPTWIEVSGGAPP-LPRSWHSSCIIEG--SKLVVSGGCTD-AGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 385 ~~~~~d~~t~~~~W~~~~~~~~p-~~r~~~~~~~~~~--~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.++.+|..|++..|......... ....+...+..+. ..++++.|... .......+..||..+....|+.-
T Consensus 128 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~ 201 (582)
T d1flga_ 128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred eEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence 58899999998889754321111 1112222222211 13334444322 11234568889999888888753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.03 E-value=7.1 Score=34.53 Aligned_cols=228 Identities=12% Similarity=-0.001 Sum_probs=109.9
Q ss_pred eEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEEEcCCCC--CCCCCc
Q 048754 334 TFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGA--PPLPRS 411 (625)
Q Consensus 334 ~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~--~p~~r~ 411 (625)
++++|+.+. +-.....+ . . ..+.+...++.+++... +.+++||+.++ +++.+.... .+..|.
T Consensus 42 I~r~d~~~g--~~~~~~~~---~-~-~~~i~~~~dg~l~va~~-------~gl~~~d~~tg--~~~~l~~~~~~~~~~~~ 105 (295)
T d2ghsa1 42 LHELHLASG--RKTVHALP---F-M-GSALAKISDSKQLIASD-------DGLFLRDTATG--VLTLHAELESDLPGNRS 105 (295)
T ss_dssp EEEEETTTT--EEEEEECS---S-C-EEEEEEEETTEEEEEET-------TEEEEEETTTC--CEEEEECSSTTCTTEEE
T ss_pred EEEEECCCC--eEEEEECC---C-C-cEEEEEecCCCEEEEEe-------CccEEeecccc--eeeEEeeeecCCCcccc
Confidence 889998873 33322211 1 1 12344445666776542 35899999998 777664321 122233
Q ss_pred cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-CcEEEEEcCCcCCCCccc
Q 048754 412 WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-RTKVLMFGGLAKSGHLRL 490 (625)
Q Consensus 412 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~ 490 (625)
+.. .+..++.+|+--..... .......|.+...+ .+.+... ... ..+.+... ++.+|+..-.
T Consensus 106 nd~-~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~--~~~~~~~-~~~---~Ng~~~s~d~~~l~~~dt~-------- 168 (295)
T d2ghsa1 106 NDG-RMHPSGALWIGTMGRKA--ETGAGSIYHVAKGK--VTKLFAD-ISI---PNSICFSPDGTTGYFVDTK-------- 168 (295)
T ss_dssp EEE-EECTTSCEEEEEEETTC--CTTCEEEEEEETTE--EEEEEEE-ESS---EEEEEECTTSCEEEEEETT--------
T ss_pred eee-EECCCCCEEEEeccccc--cccceeEeeecCCc--EEEEeec-cCC---cceeeecCCCceEEEeecc--------
Confidence 332 23334467664221111 12233444443443 4444321 111 12333333 3356766332
Q ss_pred ccCceEEEEcCCCCCce----eEeeeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCC
Q 048754 491 RSGESYTIDLGDEEPQW----KQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEE 566 (625)
Q Consensus 491 ~~~~~~~~d~~~~~~~W----~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~ 566 (625)
...+++|+++.+...+ ...... ....-....+++-.+++|||..-. ...|.+||+ +
T Consensus 169 -~~~I~~~~~d~~~~~~~~~~~~~~~~-----------~~~~g~pdG~~vD~~GnlWva~~~------~g~V~~~dp--~ 228 (295)
T d2ghsa1 169 -VNRLMRVPLDARTGLPTGKAEVFIDS-----------TGIKGGMDGSVCDAEGHIWNARWG------EGAVDRYDT--D 228 (295)
T ss_dssp -TCEEEEEEBCTTTCCBSSCCEEEEEC-----------TTSSSEEEEEEECTTSCEEEEEET------TTEEEEECT--T
T ss_pred -cceeeEeeecccccccccceEEEecc-----------CcccccccceEEcCCCCEEeeeeC------CCceEEecC--C
Confidence 3788888876422111 111111 011112234444447789987321 237999999 4
Q ss_pred CCCeEEEcCCCCCCCCCCcceEEEEC---CcEEEEEcCcCCCC-------CccCceEEEEccCC
Q 048754 567 KPSWRILNVPGQPPKFAWGHSTCVVG---GTRVLVLGGHTGEE-------WVLNELHELCLASK 620 (625)
Q Consensus 567 ~~~W~~v~~~~~~p~~r~~~~~~~~~---~~~i~i~GG~~~~~-------~~~~d~~~~~~~~~ 620 (625)
......+.. |..+ .+++.+. .+.|||.-...+.. ..-..+|.++++..
T Consensus 229 G~~~~~i~l----P~~~--~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~~~~ 286 (295)
T d2ghsa1 229 GNHIARYEV----PGKQ--TTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGIEVK 286 (295)
T ss_dssp CCEEEEEEC----SCSB--EEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSSCCC
T ss_pred CcEeeEecC----CCCc--eEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcCCCC
Confidence 556666643 3332 3455553 26798876544321 01245777665543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.61 E-value=12 Score=36.67 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=73.3
Q ss_pred cceEEECCEEEEEcccCCCCCCCCCeEEEecc-CCCCceEEcccCCCCCCcc-------ceeEEEEcCCEEEEEccCCCC
Q 048754 309 FSACAAGNRLVLFGGEGVNMQPMDDTFVLNLD-AANPEWRRVSVKSSPPGRW-------GHTLSSLNGSWLVVFGGCGRQ 380 (625)
Q Consensus 309 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~-~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~~iyv~GG~~~~ 380 (625)
.+-+++++.|||..+.. +.++.+|.. +-...|+.-. ......+. ....+ +.+++||+...
T Consensus 56 ~tP~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~-~~~~~~~~~~~~~~~~rg~a-~~~~~i~~~~~---- 123 (571)
T d2ad6a1 56 GAPLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKP-KQDASTKAVMCCDVVDRGLA-YGAGQIVKKQA---- 123 (571)
T ss_dssp SCCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECC-CCCGGGGGGCTTCSCCCCCE-EETTEEEEECT----
T ss_pred cCCEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecC-CCCcccccccccCcCCCcce-eeCCeEEEEeC----
Confidence 45668899999987531 238888863 4446787421 11111111 11223 33567776532
Q ss_pred CccccEEEEECCCCCCEEEE-cCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 381 GLLNDVFVLDLDAKQPTWIE-VSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 381 ~~~~~~~~~d~~t~~~~W~~-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
...++.+|..|++..|.. +... .+......+-+++ ++.+|+-+. .........+..||..|.+..|+.-
T Consensus 124 --~g~l~alda~tG~~~w~~~~~~~-~~~~~~t~~p~v~-~~~vivg~~-~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 124 --NGHLLALDAKTGKINWEVEVCDP-KVGSTLTQAPFVA-KDTVLMGCS-GAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp --TSEEEEEETTTCCEEEEEECCCG-GGTCBCCSCCEEE-TTEEEEECB-CGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred --CCcEEeeehhhhhhhcccccccc-ccccceeecCeEe-CCeEEEeec-cccccccCcEEEEECCCCcEEEEEe
Confidence 136899999999888985 3221 1112222233455 557766432 2222244679999999999999754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.22 E-value=7.9 Score=34.02 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=72.9
Q ss_pred EECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECC
Q 048754 313 AAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLD 392 (625)
Q Consensus 313 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~ 392 (625)
..++..++.|+.+. .+.++|+... +-.... .. .. ..-.+....++ +++.|+.+ ..+.+||..
T Consensus 184 ~~~~~~l~s~~~dg------~i~~~d~~~~--~~~~~~-~~-~~--~~v~~~~~~~~-~l~s~s~d-----~~i~iwd~~ 245 (342)
T d2ovrb2 184 QFDGIHVVSGSLDT------SIRVWDVETG--NCIHTL-TG-HQ--SLTSGMELKDN-ILVSGNAD-----STVKIWDIK 245 (342)
T ss_dssp EECSSEEEEEETTS------CEEEEETTTC--CEEEEE-CC-CC--SCEEEEEEETT-EEEEEETT-----SCEEEEETT
T ss_pred cCCCCEEEEEeCCC------eEEEeecccc--eeeeEe-cc-cc--cceeEEecCCC-EEEEEcCC-----CEEEEEecc
Confidence 34555566666533 2788888763 222111 11 11 11122334455 55666643 358889987
Q ss_pred CCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCC-cceEEEE
Q 048754 393 AKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRL-GHSLSVY 471 (625)
Q Consensus 393 t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~-~~~~~~~ 471 (625)
+.+ ....+... ........+...++ .+++.||.+ ..+.+||+.+..... .+.....+.... -.++...
T Consensus 246 ~~~-~~~~~~~~--~~~~~~~~~~~~~~-~~~~s~s~D------g~i~iwd~~tg~~i~-~~~~~~~~~~~~~v~~v~~s 314 (342)
T d2ovrb2 246 TGQ-CLQTLQGP--NKHQSAVTCLQFNK-NFVITSSDD------GTVKLWDLKTGEFIR-NLVTLESGGSGGVVWRIRAS 314 (342)
T ss_dssp TCC-EEEEECST--TSCSSCEEEEEECS-SEEEEEETT------SEEEEEETTTCCEEE-EEEECTTGGGTCEEEEEEEC
T ss_pred ccc-cccccccc--ceeeeceeecccCC-CeeEEEcCC------CEEEEEECCCCCEEE-EEecccCCCCCCCEEEEEEC
Confidence 762 22233321 11222223334444 466666632 267889987655222 221100110000 1122223
Q ss_pred CCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 472 GRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 472 ~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.++.++..|+.++... ..++++|++
T Consensus 315 ~~~~~la~g~~dGt~~-----~~l~~~Df~ 339 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTEE-----TKLLVLDFD 339 (342)
T ss_dssp SSEEEEEEECSSSSSC-----CEEEEEECC
T ss_pred CCCCEEEEEeCCCCCe-----eEEEEEeCC
Confidence 4446667776554322 568888876
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=7.9 Score=34.02 Aligned_cols=191 Identities=16% Similarity=0.093 Sum_probs=91.0
Q ss_pred EEEEccCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCc
Q 048754 371 LVVFGGCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPM 450 (625)
Q Consensus 371 iyv~GG~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~ 450 (625)
.++.|+.+ ..+.++|+... .-...-.. ... .......++ ..++.|+.+ ..+.+||+.+....
T Consensus 149 ~~~~~~~d-----~~i~~~d~~~~--~~~~~~~~--~~~--~~~~~~~~~-~~l~s~~~d------g~i~~~d~~~~~~~ 210 (342)
T d2ovrb2 149 RVVSGAYD-----FMVKVWDPETE--TCLHTLQG--HTN--RVYSLQFDG-IHVVSGSLD------TSIRVWDVETGNCI 210 (342)
T ss_dssp CEEEEETT-----SCEEEEEGGGT--EEEEEECC--CSS--CEEEEEECS-SEEEEEETT------SCEEEEETTTCCEE
T ss_pred eeeeecCC-----CeEEEeecccc--eeeEEEcC--ccc--ccccccCCC-CEEEEEeCC------CeEEEeecccceee
Confidence 55555543 24777887765 32221111 111 122334444 456666533 25788887654421
Q ss_pred eEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCcc
Q 048754 451 WREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRL 530 (625)
Q Consensus 451 W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~ 530 (625)
.. ... .... -.++...+ .+++.|+.+ ..+.+||+... .....+... .....
T Consensus 211 ~~-~~~--~~~~---v~~~~~~~-~~l~s~s~d---------~~i~iwd~~~~-~~~~~~~~~------------~~~~~ 261 (342)
T d2ovrb2 211 HT-LTG--HQSL---TSGMELKD-NILVSGNAD---------STVKIWDIKTG-QCLQTLQGP------------NKHQS 261 (342)
T ss_dssp EE-ECC--CCSC---EEEEEEET-TEEEEEETT---------SCEEEEETTTC-CEEEEECST------------TSCSS
T ss_pred eE-ecc--cccc---eeEEecCC-CEEEEEcCC---------CEEEEEecccc-ccccccccc------------ceeee
Confidence 11 111 1111 12333444 455666543 57888998732 122222111 12222
Q ss_pred ceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEE-EcCCCCCCCCCCcceEEEECCcEEEEEcCcCCCCCcc
Q 048754 531 DHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRI-LNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVL 609 (625)
Q Consensus 531 ~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~-v~~~~~~p~~r~~~~~~~~~~~~i~i~GG~~~~~~~~ 609 (625)
...++.. ++.+++.|+. ...|.+||+ .+.+-.. +...........-.++...+++.+++.|+.++.. .
T Consensus 262 ~~~~~~~-~~~~~~s~s~------Dg~i~iwd~--~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~--~ 330 (342)
T d2ovrb2 262 AVTCLQF-NKNFVITSSD------DGTVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE--E 330 (342)
T ss_dssp CEEEEEE-CSSEEEEEET------TSEEEEEET--TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS--C
T ss_pred ceeeccc-CCCeeEEEcC------CCEEEEEEC--CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC--e
Confidence 3344445 5667777775 346889998 4444322 2110011111011223334566788888877754 2
Q ss_pred CceEEEEccC
Q 048754 610 NELHELCLAS 619 (625)
Q Consensus 610 ~d~~~~~~~~ 619 (625)
..++++|++.
T Consensus 331 ~~l~~~Df~~ 340 (342)
T d2ovrb2 331 TKLLVLDFDV 340 (342)
T ss_dssp CEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 5577887754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=87.09 E-value=9.9 Score=33.94 Aligned_cols=259 Identities=8% Similarity=-0.028 Sum_probs=117.9
Q ss_pred CCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEEEcCCEEEEEccCCCCCccccEEEEECCCC
Q 048754 315 GNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAK 394 (625)
Q Consensus 315 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~ 394 (625)
++.||+.--. .+.++++++... ......... ...-+.++...++++||..-.+ ......+..++..+.
T Consensus 50 ~G~Ly~~D~~------~g~I~ri~p~g~--~~~~~~~~~---~~~p~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 50 QGQLFLLDVF------EGNIFKINPETK--EIKRPFVSH---KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGD 117 (319)
T ss_dssp TSCEEEEETT------TCEEEEECTTTC--CEEEEEECS---SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSC
T ss_pred CCCEEEEECC------CCEEEEEECCCC--eEEEEEeCC---CCCeeEEEECCCCCEEEEecCC-CccceeEEEEcCCCc
Confidence 3468876421 223888988762 333221111 1112344444455788874211 112345777887776
Q ss_pred CCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCCCcceEEEEC-C
Q 048754 395 QPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYG-R 473 (625)
Q Consensus 395 ~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~-~ 473 (625)
....+.....+..+.+ ..+...++.+|+-.-..........++.++++... .+.+... ...+ .+.++-. +
T Consensus 118 --~~~~~~~~~~~~~~~n-d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~-~~~p---nGia~s~dg 188 (319)
T d2dg1a1 118 --NLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQN-ISVA---NGIALSTDE 188 (319)
T ss_dssp --SCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEE-ESSE---EEEEECTTS
T ss_pred --eeeeeccCCCcccCCc-ceeEEeccceeecccccccccCcceeEEEecccce--eEEEeec-ccee---eeeeecccc
Confidence 3333222111222322 23333445688753211122234568888875544 5554321 1112 2344433 3
Q ss_pred cEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEe-eeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCC
Q 048754 474 TKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQL-ECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGL 552 (625)
Q Consensus 474 ~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~-~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~ 552 (625)
+.||+.--. .+.+++|+++.+...-... .... ...........+++-.+++|||.--.
T Consensus 189 ~~lyvad~~---------~~~I~~~d~~~~g~~~~~~~~~~~--------~~~~~~~~PdGl~vD~~G~l~Va~~~---- 247 (319)
T d2dg1a1 189 KVLWVTETT---------ANRLHRIALEDDGVTIQPFGATIP--------YYFTGHEGPDSCCIDSDDNLYVAMYG---- 247 (319)
T ss_dssp SEEEEEEGG---------GTEEEEEEECTTSSSEEEEEEEEE--------EECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred ceEEEeccc---------CCceEEEEEcCCCceeccccceee--------eccCCccceeeeeEcCCCCEEEEEcC----
Confidence 478887332 4789999886432221111 1110 00011111223444457889998432
Q ss_pred CCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEEC--CcEEEEEcCcCCCCCccCceEEEEccCC
Q 048754 553 HSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVG--GTRVLVLGGHTGEEWVLNELHELCLASK 620 (625)
Q Consensus 553 ~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~--~~~i~i~GG~~~~~~~~~d~~~~~~~~~ 620 (625)
...|.+||+ +-..-..+..++..+......+++... .+.+|+.-.... ..--..+|+++....
T Consensus 248 --~g~V~~~~p--~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~g~l~~~~~~~~ 312 (319)
T d2dg1a1 248 --QGRVLVFNK--RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE-MGGGSMLYTVNGFAK 312 (319)
T ss_dssp --TTEEEEECT--TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG-GTCCEEEEEEECSSC
T ss_pred --CCEEEEECC--CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCC-cCCceeEEEEeCCCc
Confidence 458999998 333344554433222222222333332 245665432111 111245677666543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=87.00 E-value=11 Score=34.39 Aligned_cols=54 Identities=7% Similarity=-0.000 Sum_probs=27.2
Q ss_pred EEEcccCCCCCCCCCeEEEeccCCCCceEEcccCCCCCCccceeEEE-EcCCEEEEEcc
Q 048754 319 VLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSVKSSPPGRWGHTLSS-LNGSWLVVFGG 376 (625)
Q Consensus 319 yv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~r~~~~~~~-~~~~~iyv~GG 376 (625)
+++|.+..+ ..++.+.++..+.+...+.....+....-..++. -+++.+|+..+
T Consensus 5 l~vGtyt~~----~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~ 59 (365)
T d1jofa_ 5 LMIGTWTPP----GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM 59 (365)
T ss_dssp EEEEESSSS----CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB
T ss_pred EEEEeecCC----CCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC
Confidence 566776443 2387777776556665543222222211112332 24567888754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.32 E-value=9.8 Score=33.11 Aligned_cols=168 Identities=6% Similarity=0.037 Sum_probs=84.6
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEcCCCCCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWSPPSR 463 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~p~~r 463 (625)
..+..++.... .+..+... .....+..+...++.+|+.... ...+++|+++..- -..+.. .....
T Consensus 93 ~~i~~~~~~g~--~~~~~~~~---~~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~--~~~~g~--~~~~~ 157 (279)
T d1q7fa_ 93 HQIQIYNQYGQ--FVRKFGAT---ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNV--LHKFGC--SKHLE 157 (279)
T ss_dssp CEEEEECTTSC--EEEEECTT---TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCE--EEEEEC--TTTCS
T ss_pred ccccccccccc--ceeecCCC---cccccceeccccCCcEEEEeec------cceeeEeccCCce--eecccc--ccccc
Confidence 35777777655 55555321 1222233434444578886542 2357778864321 223221 11222
Q ss_pred CcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccCcCCCCCCCCCCccceEEEEecCCEEE
Q 048754 464 LGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRII 543 (625)
Q Consensus 464 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~ 543 (625)
..+.+++-.++.+|+.... ...+++||.+ ......+... +. .......++-.+++||
T Consensus 158 ~~~~i~~d~~g~i~v~d~~---------~~~V~~~d~~--G~~~~~~g~~---------g~---~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDNR---------AHCVKVFNYE--GQYLRQIGGE---------GI---TNYPIGVGINSNGEIL 214 (279)
T ss_dssp SEEEEEECSSSEEEEEEGG---------GTEEEEEETT--CCEEEEESCT---------TT---SCSEEEEEECTTCCEE
T ss_pred ccceeeeccceeEEeeecc---------ccceeeeecC--Cceeeeeccc---------cc---ccCCcccccccCCeEE
Confidence 3334444455688887654 3678899987 3333333221 11 1112333444467899
Q ss_pred EEecCCCCCCCCCcEEEEeCCCCCCCeEEE-cCCCCCCCCCCcceEEEECCcEEEEEc
Q 048754 544 IFGGSIAGLHSPSQLFLLDPSEEKPSWRIL-NVPGQPPKFAWGHSTCVVGGTRVLVLG 600 (625)
Q Consensus 544 v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v-~~~~~~p~~r~~~~~~~~~~~~i~i~G 600 (625)
|.-..+ ...|.+|+. +.++... ......+ .-++.++.+++.|||..
T Consensus 215 Vad~~~-----~~~v~~f~~---~G~~~~~~~~~~~~~---~p~~vav~~dG~l~V~~ 261 (279)
T d1q7fa_ 215 IADNHN-----NFNLTIFTQ---DGQLISALESKVKHA---QCFDVALMDDGSVVLAS 261 (279)
T ss_dssp EEECSS-----SCEEEEECT---TSCEEEEEEESSCCS---CEEEEEEETTTEEEEEE
T ss_pred EEECCC-----CcEEEEECC---CCCEEEEEeCCCCCC---CEeEEEEeCCCcEEEEe
Confidence 974431 235888987 3443222 1111121 23566677777888754
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.90 E-value=8.1 Score=31.75 Aligned_cols=153 Identities=12% Similarity=0.033 Sum_probs=73.4
Q ss_pred ceEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCceEEccc--CCCCCCccceeEEEE-cCCEEEEEccCCCCCccccE
Q 048754 310 SACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRRVSV--KSSPPGRWGHTLSSL-NGSWLVVFGGCGRQGLLNDV 386 (625)
Q Consensus 310 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 386 (625)
+++.+++.+|+|-|.- +|+++.......=..+.. +++|.. . -++... .++++|+|-| +..
T Consensus 16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~-I-DAAf~~~~~~~~yfFkG-------~~y 78 (195)
T d1su3a2 16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNG-L-EAAYEFADRDEVRFFKG-------NKY 78 (195)
T ss_dssp EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSS-C-CEEEEEGGGTEEEEEET-------TEE
T ss_pred EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCc-c-cceEEecCCcEEEEECC-------cEE
Confidence 4556789999998741 344332221111111111 112221 1 233323 3568999988 468
Q ss_pred EEEECCCC-CCEEEEcCC-CCCCCCCc-cceEEEE-cCCEEEEEcCcCCCCceeceEEEEecCCCCCce---EEcCC--C
Q 048754 387 FVLDLDAK-QPTWIEVSG-GAPPLPRS-WHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW---REIPT--S 457 (625)
Q Consensus 387 ~~~d~~t~-~~~W~~~~~-~~~p~~r~-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~--~ 457 (625)
|+|+..+. ......+.. ...|.... --++... .++++|+|-| +..|.||..+....- ..+.. .
T Consensus 79 ~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG--------~~y~ry~~~~~~vd~gyPk~I~~~w~ 150 (195)
T d1su3a2 79 WAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYPKMIAHDFP 150 (195)
T ss_dssp EEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC--------CEEEEEeccCccccCCcccccccccC
Confidence 88874321 001122211 00121111 1123233 4568999988 367899865432110 11211 1
Q ss_pred CCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 458 WSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 458 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
+.|... .++... ++++|++-| +..|+||..
T Consensus 151 Gvp~~i--DAAf~~-~g~~YfFkg-----------~~y~r~~~~ 180 (195)
T d1su3a2 151 GIGHKV--DAVFMK-DGFFYFFHG-----------TRQYKFDPK 180 (195)
T ss_dssp TSCSCC--SEEEEE-TTEEEEEET-----------TEEEEEETT
T ss_pred CCCCCc--cEEEEE-CCeEEEEEC-----------CEEEEEeCC
Confidence 233322 234444 559999866 678889876
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=85.69 E-value=14 Score=36.31 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=70.0
Q ss_pred ccceEEECCEEEEEcccCCCCCCCCCeEEEec-cCCCCceEEcccCCCCCCcc-------ceeEEEEcCC----EEEEEc
Q 048754 308 NFSACAAGNRLVLFGGEGVNMQPMDDTFVLNL-DAANPEWRRVSVKSSPPGRW-------GHTLSSLNGS----WLVVFG 375 (625)
Q Consensus 308 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~W~~~~~~~~p~~r~-------~~~~~~~~~~----~iyv~G 375 (625)
..+-+++++.||+.+... +.++.+|. .+-+..|+--. ...+..+. +-.++...++ ..++++
T Consensus 55 ~~tPiv~~g~ly~~t~~~------~~v~a~d~~~tG~~~W~~~~-~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~ 127 (596)
T d1w6sa_ 55 EGAPLVVDGKMYIHTSFP------NNTFALGLDDPGTILWQDKP-KQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT 127 (596)
T ss_dssp CSCCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECC-CCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE
T ss_pred eeCCEEECCEEEEeeCCC------CcEEEEeCCCCCCEEEEecC-CCCcccccccccccccceeEEecCCCCCceEEEEE
Confidence 355678899999986532 22777775 34446676421 11111110 0112222221 123333
Q ss_pred cCCCCCccccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCceEEc
Q 048754 376 GCGRQGLLNDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREI 454 (625)
Q Consensus 376 G~~~~~~~~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~ 454 (625)
.. -..++.+|..|++..|..-.....+......+-.++ ++++|| |...........+..||..|....|+.-
T Consensus 128 t~-----dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~viv-g~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 128 QL-----DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVII-GSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CT-----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEE-CCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred eC-----CCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEE-eeccccccccCceEEEECCCCcEEEEee
Confidence 32 136889999999888986332111112222233445 556666 4322222234678999999999999754
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=8.4 Score=31.78 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=55.5
Q ss_pred cCCEEEEEccCCCCCccccEEEEECCCCCC-EEEEcCCCCCCCC-CccceEEEE-cCCEEEEEcCcCCCCceeceEEEEe
Q 048754 367 NGSWLVVFGGCGRQGLLNDVFVLDLDAKQP-TWIEVSGGAPPLP-RSWHSSCII-EGSKLVVSGGCTDAGVLLSDTYLLD 443 (625)
Q Consensus 367 ~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~-~W~~~~~~~~p~~-r~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d 443 (625)
.++++|+|-| +..|+|+-.+-.. --..+.....|.. ..--++... .++++|+|-| +..|.||
T Consensus 68 ~~~~~yffkg-------~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg--------~~y~ryd 132 (200)
T d1gena_ 68 QEEKAVFFAG-------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYN 132 (200)
T ss_dssp TTTEEEEEET-------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEE
T ss_pred CCCeEEEecC-------ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC--------cEEEEec
Confidence 4668999987 3578887432110 1123332111221 111233333 4568999987 4679999
Q ss_pred cCCCCCce---EEcCC--CCCCCCCCcceEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 444 LTTDKPMW---REIPT--SWSPPSRLGHSLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 444 ~~~~~~~W---~~~~~--~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
..+..... ..+.. .+.|. .-.++... .++++|++-| +..|.||..
T Consensus 133 ~~~~~vd~~yPk~I~~~w~gvp~--~idAAf~~~~~g~~Yff~g-----------~~y~r~d~~ 183 (200)
T d1gena_ 133 EVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKG-----------AYYLKLENQ 183 (200)
T ss_dssp TTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEET-----------TEEEEEETT
T ss_pred cccceeccCcceehhhccCCCCC--CccEEEEecCCCEEEEEEC-----------CEEEEEECC
Confidence 75543211 12211 12332 22344444 3568999866 577888865
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=8.7 Score=31.43 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=73.8
Q ss_pred eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEE--EcCC--CCCCCCCccceEEEE-cCCEEEEEcCcCCCCcee
Q 048754 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI--EVSG--GAPPLPRSWHSSCII-EGSKLVVSGGCTDAGVLL 436 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~--~~~~--~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~ 436 (625)
+++.+ ++.+|+|-|. .+|+++.... .+. .+.. ...|... -++... .++++|+|-|
T Consensus 13 Av~~~-~g~~y~Fkg~-------~~wr~~~~~~--~~~p~~i~~~w~~lp~~I--DAAf~~~~~~~~yffkg-------- 72 (192)
T d1pexa_ 13 AITSL-RGETMIFKDR-------FFWRLHPQQV--DAELFLTKSFWPELPNRI--DAAYEHPSHDLIFIFRG-------- 72 (192)
T ss_dssp EEEEE-TTEEEEEETT-------EEEEECSSSS--CCEEEEHHHHCTTSCSSC--CEEEEETTTTEEEEEET--------
T ss_pred EEEEc-CCeEEEEECC-------EEEEEcCCCC--CCcccchhhhCcCCCCcc--cceEEEcCCCEEEEEcC--------
Confidence 34444 5689999772 4666654433 222 2221 0113221 223333 4678898877
Q ss_pred ceEEEEecCCCCCce-EEcCCCCCCCCCCcc-eEEEE-CCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCce---eEe
Q 048754 437 SDTYLLDLTTDKPMW-REIPTSWSPPSRLGH-SLSVY-GRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQW---KQL 510 (625)
Q Consensus 437 ~~~~~~d~~~~~~~W-~~~~~~~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W---~~~ 510 (625)
+.+|+|+-.+-...+ ..+.....|.+...- ++... .++++|++-| +..|.||........ ..+
T Consensus 73 ~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-----------~~y~~y~~~~~~~~~~~pk~I 141 (192)
T d1pexa_ 73 RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-----------NQVWRYDDTNHIMDKDYPRLI 141 (192)
T ss_dssp TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-----------TEEEEEETTTTEECSSCCCBH
T ss_pred CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-----------CEEEEEcCccccccCCCcEEH
Confidence 357888732211111 223221222221112 23333 3468999965 678999876321100 111
Q ss_pred eeccccCcCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeC
Q 048754 511 ECNAFTGVGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDP 563 (625)
Q Consensus 511 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~ 563 (625)
... ....|-.-.+++.. ++++|+|-|. ..|+||.
T Consensus 142 ~~~----------w~gvp~~vdAa~~~-~g~~YfF~g~--------~y~r~~~ 175 (192)
T d1pexa_ 142 EED----------FPGIGDKVDAVYEK-NGYIYFFNGP--------IQFEYSI 175 (192)
T ss_dssp HHH----------STTSCSCCSEEEEE-TTEEEEEETT--------EEEEEET
T ss_pred hhc----------CCCCCCCceEEEEe-CCEEEEEECC--------EEEEEeC
Confidence 110 00111223355555 8999999664 7788887
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.92 E-value=15 Score=31.77 Aligned_cols=187 Identities=7% Similarity=0.078 Sum_probs=87.8
Q ss_pred eEEEEcCCEEEEEccCCCCCccccEEEEECCCCCCEEE-EcCCCCCCC-CCcc-ceEEEEcC-CEEEEEcCcCCCCceec
Q 048754 362 TLSSLNGSWLVVFGGCGRQGLLNDVFVLDLDAKQPTWI-EVSGGAPPL-PRSW-HSSCIIEG-SKLVVSGGCTDAGVLLS 437 (625)
Q Consensus 362 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~t~~~~W~-~~~~~~~p~-~r~~-~~~~~~~~-~~iyv~GG~~~~~~~~~ 437 (625)
..++-.+++|||.-.. .+.+.+||++.. +. .+.....+. .... +..+...+ +..++..-. ...
T Consensus 27 gvavd~dg~i~VaD~~-----n~rI~v~d~~G~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~ 93 (279)
T d1q7fa_ 27 GVAVNAQNDIIVADTN-----NHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTH 93 (279)
T ss_dssp EEEECTTCCEEEEEGG-----GTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGC
T ss_pred EEEEcCCCCEEEEECC-----CCEEEEEeCCCC---EEEEecccCCCcccccccccccccccccccceeccC-----Ccc
Confidence 3444345579998532 246888987643 32 222111111 1111 22222322 233332111 123
Q ss_pred eEEEEecCCCCCceEEcCCCCCCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcCCCCCceeEeeeccccC
Q 048754 438 DTYLLDLTTDKPMWREIPTSWSPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLGDEEPQWKQLECNAFTG 517 (625)
Q Consensus 438 ~~~~~d~~~~~~~W~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~ 517 (625)
.+..++.... .+..+... .....+..++..++.+|+.... ...+++++.+. ..-..+...
T Consensus 94 ~i~~~~~~g~--~~~~~~~~---~~~~p~~~avd~~G~i~v~~~~---------~~~~~~~~~~g--~~~~~~g~~---- 153 (279)
T d1q7fa_ 94 QIQIYNQYGQ--FVRKFGAT---ILQHPRGVTVDNKGRIIVVECK---------VMRVIIFDQNG--NVLHKFGCS---- 153 (279)
T ss_dssp EEEEECTTSC--EEEEECTT---TCSCEEEEEECTTSCEEEEETT---------TTEEEEECTTS--CEEEEEECT----
T ss_pred cccccccccc--ceeecCCC---cccccceeccccCCcEEEEeec---------cceeeEeccCC--ceeeccccc----
Confidence 5677775332 25554321 1222244555555678887543 25677888762 222222211
Q ss_pred cCCCCCCCCCCccceEEEEecCCEEEEEecCCCCCCCCCcEEEEeCCCCCCCeEEEcCCCCCCCCCCcceEEEECCcEEE
Q 048754 518 VGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVL 597 (625)
Q Consensus 518 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~v~~~d~~~~~~~W~~v~~~~~~p~~r~~~~~~~~~~~~i~ 597 (625)
.........+.-.++.+|+.... ...|++||.+ ......+...+.... -.+.++..++.||
T Consensus 154 --------~~~~~~~~i~~d~~g~i~v~d~~------~~~V~~~d~~--G~~~~~~g~~g~~~~---P~giavD~~G~i~ 214 (279)
T d1q7fa_ 154 --------KHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYE--GQYLRQIGGEGITNY---PIGVGINSNGEIL 214 (279)
T ss_dssp --------TTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETT--CCEEEEESCTTTSCS---EEEEEECTTCCEE
T ss_pred --------ccccccceeeeccceeEEeeecc------ccceeeeecC--CceeeeecccccccC---CcccccccCCeEE
Confidence 22222233344446789988664 4589999983 333334432232221 2344454556677
Q ss_pred EEc
Q 048754 598 VLG 600 (625)
Q Consensus 598 i~G 600 (625)
|.-
T Consensus 215 Vad 217 (279)
T d1q7fa_ 215 IAD 217 (279)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.66 E-value=12 Score=30.57 Aligned_cols=150 Identities=12% Similarity=0.098 Sum_probs=75.0
Q ss_pred eEEECCEEEEEcccCCCCCCCCCeEEEeccCCCCce---EEccc--CCCCCCccceeEEEEcCCEEEEEccCCCCCcccc
Q 048754 311 ACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEW---RRVSV--KSSPPGRWGHTLSSLNGSWLVVFGGCGRQGLLND 385 (625)
Q Consensus 311 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W---~~~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 385 (625)
.+.+++.+|+|-|. ..|+++-... ..+ ..+.. +++|. ....+...-.++++|+|-| +.
T Consensus 12 v~~~~G~~y~Fkg~--------~ywr~~~~~~-~~~~~P~~I~~~w~glp~-~IDAAf~~~~~~k~yfFkg-------~~ 74 (195)
T d1itva_ 12 IAEIGNQLYLFKDG--------KYWRFSEGRG-SRPQGPFLIADKWPALPR-KLDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEETTEEEEEETT--------EEEEECCSSS-CCCEEEEEHHHHCTTSCS-SCSEEEECTTTCCEEEEET-------TE
T ss_pred EEEeCCEEEEEECC--------EEEEEeCCCC-CcCCCcEEeeeecCCCCC-CccEEEEECCCCEEEEEec-------CE
Confidence 45678999999873 1556653221 111 11111 12222 1222221112467999876 35
Q ss_pred EEEEECCCCCCEE-EEcCCCCCCCCCc-cceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCCce---EEcCC--CC
Q 048754 386 VFVLDLDAKQPTW-IEVSGGAPPLPRS-WHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMW---REIPT--SW 458 (625)
Q Consensus 386 ~~~~d~~t~~~~W-~~~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W---~~~~~--~~ 458 (625)
.|+|+-.+- .. ..+.....|..-. -.++....++++|+|-| +..|.||..+.+... +.+.. .+
T Consensus 75 ~~~y~~~~~--~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG--------~~y~ryd~~~~~v~~gyPk~i~~~w~g 144 (195)
T d1itva_ 75 VWVYTGASV--LGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp EEEEETTEE--EEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred EEEEcCccc--cCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec--------cEEEEEeCCcccccCCCccchhhhcCC
Confidence 788874321 11 2443321222212 12333445568999977 367999976543111 12211 12
Q ss_pred CCCCCCcceEEEECCcEEEEEcCCcCCCCcccccCceEEEEcC
Q 048754 459 SPPSRLGHSLSVYGRTKVLMFGGLAKSGHLRLRSGESYTIDLG 501 (625)
Q Consensus 459 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~d~~ 501 (625)
.|.. -.++....+ .+|++-| +..|+||..
T Consensus 145 vp~~--idaAf~~~~-~~Yffkg-----------~~y~r~~~~ 173 (195)
T d1itva_ 145 VPLD--THDVFQFRE-KAYFCQD-----------RFYWRVSSR 173 (195)
T ss_dssp SCSS--CSEEEEETT-EEEEEET-----------TEEEEEECC
T ss_pred CCCC--CcEEEEeCC-cEEEEEC-----------CEEEEEcCC
Confidence 3332 244555555 8888866 577888865
|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: BphP N-terminal domain-like domain: Phytochrome-like protein Cph1 species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=81.48 E-value=1.3 Score=33.85 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=34.1
Q ss_pred CeeE-EEecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 54 PTSF-VVADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 54 ~~~i-~~~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
+.|+ +++|. .+++|..++.....++|.++++++|++..+++.
T Consensus 25 phG~LLald~--~~~~I~~aS~N~~~~lG~~~~~lLG~~l~~ll~ 67 (127)
T d2veaa3 25 PHGLVVVLQE--PDLTISQISANCTGILGRSPEDLLGRTLGEVFD 67 (127)
T ss_dssp TTSEEEEEET--TTTEEEEEETTHHHHTSCCTTTSSTTTTTTTSB
T ss_pred CCeEEEEEEC--CCCEEEEEcCCHHHHhCcChHHHcCCCHHHHCC
Confidence 4444 34452 278999999999999999999999999988865
|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: PYP-like sensor domain (PAS domain) family: BphP N-terminal domain-like domain: Bacteriophytochrome BphP species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.30 E-value=1 Score=34.49 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCeeEEE-ecCCCCCCCEEEEehHHHHHhCCCchhhcCCCCccccc
Q 048754 53 TPTSFVV-ADAFDPDFPIIYVNKVFEIFTGYRADEVLGRNCRFLQY 97 (625)
Q Consensus 53 ~~~~i~~-~d~~~~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~ 97 (625)
.+.|+++ +|. .++.|..++.....++|+++++++|++..+++.
T Consensus 33 QphG~LLald~--~~~~I~~~S~N~~~~lG~~~~~llG~~l~~ll~ 76 (127)
T d2o9ca2 33 QPHGALLTADG--HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLP 76 (127)
T ss_dssp CTTSEEEEEET--TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHCT
T ss_pred CCCeEEEEEEC--CCCEEEEECCCHHHHhCCChHHHcCCCHHHHCC
Confidence 3445444 453 279999999999999999999999999888863
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=80.57 E-value=15 Score=32.03 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=31.7
Q ss_pred ccEEEEECCCCCCEEEEcCCCCCCCCCccceEEEEcCCEEEEEcCcCCCCceeceEEEEecCCCCC
Q 048754 384 NDVFVLDLDAKQPTWIEVSGGAPPLPRSWHSSCIIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKP 449 (625)
Q Consensus 384 ~~~~~~d~~t~~~~W~~~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~ 449 (625)
+.+.++|..+.+. ...++... ......+.+..-+++.+|+.|+.. ..+.+||+.+.+.
T Consensus 11 ~~v~v~D~~s~~~-~~~i~~~~-~~~~~~~i~~spDg~~l~v~~~~~------~~v~v~D~~t~~~ 68 (337)
T d1pbyb_ 11 DKLVVIDTEKMAV-DKVITIAD-AGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGET 68 (337)
T ss_dssp TEEEEEETTTTEE-EEEEECTT-CTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCE
T ss_pred CEEEEEECCCCeE-EEEEECCC-CCCCccEEEECCCCCEEEEEECCC------CeEEEEECCCCcE
Confidence 5789999988732 22232210 011112222223566788876532 3789999877653
|