Citrus Sinensis ID: 048780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
cccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccc
cccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccc
MGRASGGFVLLGRILmscftpnmVTFNSLIKGLCTEGRILEAARLFKKLNvfccdpnvitFNTLALVALNLFEEMVNEFgvickpdvvtctniidglckdgfmmdqgmrpdVVTLNVMtdnlskdgkmEEANCLLEVMIqrdvnpntctyntlmdgfawwskgcrhdvysyNILINgyckdrnvEDAVSLCREMLSEGIRADATTYNTLFMAinnvppdshvytTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLmqnpgltpdvvTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
******GFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQH******************
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETG****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
Q9SXD1630 Pentatricopeptide repeat- yes no 0.981 0.506 0.336 6e-51
Q9CAN5614 Pentatricopeptide repeat- no no 0.981 0.519 0.342 8e-50
Q9SH26577 Pentatricopeptide repeat- no no 0.981 0.552 0.339 2e-49
Q6NQ83619 Pentatricopeptide repeat- no no 0.984 0.516 0.341 2e-49
Q9SXD8634 Pentatricopeptide repeat- no no 0.981 0.503 0.339 7e-49
Q9C8T7559 Pentatricopeptide repeat- no no 0.981 0.570 0.336 3e-48
Q9LQ14629 Pentatricopeptide repeat- no no 0.981 0.507 0.331 3e-48
Q9CAN0630 Pentatricopeptide repeat- no no 0.981 0.506 0.336 6e-48
Q9CAM8629 Pentatricopeptide repeat- no no 0.972 0.502 0.336 9e-48
Q9ASZ8621 Pentatricopeptide repeat- no no 0.981 0.513 0.332 3e-47
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 Back     alignment and function desciption
 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 195/374 (52%), Gaps = 55/374 (14%)

Query: 3   RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
           +AS    L+ R++     P++VT+  ++ GLC  G    A  L  K+     +P V+ +N
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260

Query: 63  TL---------ALVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
           T+            ALNLF+EM  + G+  +P+VVT +++I  LC  G           M
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETK-GI--RPNVVTYSSLISCLCNYGRWSDASRLLSDM 317

Query: 104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
           +++ + PDV T + + D   K+GK+ EA  L + M++R ++P+  TY++L++GF      
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377

Query: 161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
                      SK C  DV +YN LI G+CK + VE+ + + REM   G+  +  TYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437

Query: 210 F------------------MAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKC 251
                              M  + VPP+   Y T +DGL KNG + +AM VF  +   K 
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497

Query: 252 VLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKAN 311
             TI T N +I+G+CK G+++  WD+F  L    G+ PDVV YN MI GFC++G  ++A+
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLK-GVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 312 GLLLDMEETGLEPN 325
            L  +M+E G  PN
Sbjct: 557 ALFKEMKEDGTLPN 570

Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 Back     alignment and function description
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 Back     alignment and function description
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 Back     alignment and function description
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 Back     alignment and function description
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 Back     alignment and function description
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
449462479 580 PREDICTED: pentatricopeptide repeat-cont 0.990 0.555 0.413 2e-71
449529622 618 PREDICTED: pentatricopeptide repeat-cont 0.990 0.521 0.402 1e-68
449520325 605 PREDICTED: pentatricopeptide repeat-cont 0.990 0.532 0.390 1e-68
449462477 597 PREDICTED: pentatricopeptide repeat-cont 0.990 0.539 0.391 8e-67
449520323 605 PREDICTED: pentatricopeptide repeat-cont 0.990 0.532 0.388 2e-66
449444222 588 PREDICTED: pentatricopeptide repeat-cont 0.990 0.547 0.403 1e-65
359479583 627 PREDICTED: pentatricopeptide repeat-cont 0.978 0.507 0.389 4e-65
255559961 628 pentatricopeptide repeat-containing prot 0.990 0.512 0.390 4e-63
449444228 585 PREDICTED: pentatricopeptide repeat-cont 0.990 0.550 0.403 2e-62
449491568412 PREDICTED: pentatricopeptide repeat-cont 0.944 0.745 0.384 2e-52
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 160/387 (41%), Positives = 218/387 (56%), Gaps = 65/387 (16%)

Query: 3   RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
           R   GF     IL   ++PN+VT+N+LIKGLC E RI EA RLF ++    C P+V+T+ 
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178

Query: 63  TLAL---------VALNLFEEMVNE---FGVICKPDVVTCTNIIDGLCKDGF-------- 102
           TL           +AL L +EM+N+   + + CKP+V+T   I+DGLCK G         
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238

Query: 103 ------------MMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTY 150
                       M+DQG++PD+VT NV+ D L K+GK+ EA  LL VMI+  + P+  TY
Sbjct: 239 EEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTY 298

Query: 151 NTLMDGF--------------AWWSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLS 196
           N+L++GF              +  SKGC  DV SYN+LINGY K   VE+A+ L  EML 
Sbjct: 299 NSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLL 358

Query: 197 EGIRADATTYNTLF------------------MAINNVPPDSHVYTTYIDGLYKNGFVLE 238
            G R +  TY++L                   M  + +  +S+ Y  ++DGL KN  + E
Sbjct: 359 VGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFE 418

Query: 239 AMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMI 298
           AMK+F+ + +    L IE  NCLIDGLCK G+L+ AW++F  L  N G  P+VVTY IMI
Sbjct: 419 AMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKL-SNEGHEPNVVTYTIMI 477

Query: 299 HGFCKEGQHQKANGLLLDMEETGLEPN 325
           HGFC+EGQ  KAN L+  ME  G  P+
Sbjct: 478 HGFCREGQVDKANVLIQKMEANGCTPD 504

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
TAIR|locus:2015228614 AT1G63080 [Arabidopsis thalian 0.929 0.491 0.328 2.3e-37
TAIR|locus:2026172485 NG1 "novel gene 1" [Arabidopsi 0.88 0.589 0.325 1.2e-35
TAIR|locus:2015213629 AT1G63150 [Arabidopsis thalian 0.870 0.449 0.332 4.9e-35
TAIR|locus:2026192630 RPF2 "rna processing factor 2" 0.941 0.485 0.298 1.1e-34
TAIR|locus:1009023134 644 AT1G12775 [Arabidopsis thalian 0.923 0.465 0.308 4.2e-34
TAIR|locus:2015218590 AT1G63070 [Arabidopsis thalian 0.963 0.530 0.294 3.5e-31
TAIR|locus:2031301577 AT1G63400 [Arabidopsis thalian 0.953 0.537 0.286 6.7e-31
TAIR|locus:2024537 666 AT1G64100 [Arabidopsis thalian 0.858 0.418 0.324 9.4e-31
TAIR|locus:2009155500 AT1G06580 [Arabidopsis thalian 0.929 0.604 0.306 1.9e-30
TAIR|locus:2203916634 AT1G62590 [Arabidopsis thalian 0.963 0.493 0.298 4.6e-30
TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 404 (147.3 bits), Expect = 2.3e-37, P = 2.3e-37
 Identities = 117/356 (32%), Positives = 179/356 (50%)

Query:     3 RASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFN 62
             +AS    L+ R+++    P++VT+ ++I GLC  G    A  L  K+     + +V+ ++
Sbjct:   185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244

Query:    63 TL--ALV-------ALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------M 103
             T+  +L        ALNLF EM N+ G+  +PDV T +++I  LC  G           M
Sbjct:   245 TVIDSLCKYRHVDDALNLFTEMDNK-GI--RPDVFTYSSLISCLCNYGRWSDASRLLSDM 301

Query:   104 MDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW--- 160
             +++ + P+VVT N + D  +K+GK+ EA  L + MIQR ++PN  TYN+L++GF      
Sbjct:   302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361

Query:   161 -----------SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTL 209
                        SK C  DV +YN LING+CK + V D + L R+M   G+  +  TY TL
Sbjct:   362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421

Query:   210 FMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIG 269
                              I G ++      A  VF  + +      I T N L+DGLCK G
Sbjct:   422 -----------------IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query:   270 RLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEETGLEPN 325
             +L+ A  +F  L Q   + PD+ TYNIM  G CK G+ +    L   +   G++P+
Sbjct:   465 KLEKAMVVFEYL-QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024537 AT1G64100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009155 AT1G06580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
pfam1304150 pfam13041, PPR_2, PPR repeat family 2e-14
pfam1304150 pfam13041, PPR_2, PPR repeat family 3e-11
pfam1304150 pfam13041, PPR_2, PPR repeat family 6e-11
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 6e-11
pfam1304150 pfam13041, PPR_2, PPR repeat family 9e-11
PLN03081 697 PLN03081, PLN03081, pentatricopeptide (PPR) repeat 4e-10
pfam1285434 pfam12854, PPR_1, PPR repeat 1e-09
pfam1285434 pfam12854, PPR_1, PPR repeat 9e-09
pfam1304150 pfam13041, PPR_2, PPR repeat family 1e-08
pfam1304150 pfam13041, PPR_2, PPR repeat family 4e-07
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 9e-07
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 1e-06
pfam0153531 pfam01535, PPR, PPR repeat 1e-06
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 2e-06
pfam1285434 pfam12854, PPR_1, PPR repeat 3e-06
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 1e-05
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 3e-05
pfam0153531 pfam01535, PPR, PPR repeat 4e-05
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 6e-05
pfam1381234 pfam13812, PPR_3, Pentatricopeptide repeat domain 1e-04
pfam1381234 pfam13812, PPR_3, Pentatricopeptide repeat domain 2e-04
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 4e-04
pfam1285434 pfam12854, PPR_1, PPR repeat 0.001
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 0.001
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 0.002
PLN03077 857 PLN03077, PLN03077, Protein ECB2; Provisional 0.003
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information 
 Score = 65.9 bits (162), Expect = 2e-14
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 257 TCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCK 303
           T N LIDG CK G+++ A  +F+  M+  G+ P+V TY+I+I G CK
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNE-MKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat Back     alignment and domain information
>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|144943 pfam01535, PPR, PPR repeat Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information
>gnl|CDD|144943 pfam01535, PPR, PPR repeat Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain Back     alignment and domain information
>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PRK11788389 tetratricopeptide repeat protein; Provisional 99.87
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.81
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.78
PRK11788389 tetratricopeptide repeat protein; Provisional 99.76
KOG4422625 consensus Uncharacterized conserved protein [Funct 99.75
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.68
KOG4422 625 consensus Uncharacterized conserved protein [Funct 99.66
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.58
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.57
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.56
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.55
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.55
PF1304150 PPR_2: PPR repeat family 99.52
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.51
PF1304150 PPR_2: PPR repeat family 99.5
TIGR00990 615 3a0801s09 mitochondrial precursor proteins import 99.5
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.5
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.5
PRK14574 822 hmsH outer membrane protein; Provisional 99.46
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.44
PRK14574 822 hmsH outer membrane protein; Provisional 99.42
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.42
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.39
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.39
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.38
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.36
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.36
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.35
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.34
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.34
KOG2076 895 consensus RNA polymerase III transcription factor 99.33
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.31
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.3
KOG1126638 consensus DNA-binding cell division cycle control 99.3
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.28
PRK12370553 invasion protein regulator; Provisional 99.27
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.22
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.21
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.19
PRK12370553 invasion protein regulator; Provisional 99.18
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.16
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.15
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.07
COG2956 389 Predicted N-acetylglucosaminyl transferase [Carboh 99.05
KOG2003 840 consensus TPR repeat-containing protein [General f 99.01
KOG1126638 consensus DNA-binding cell division cycle control 99.0
PF1285434 PPR_1: PPR repeat 98.98
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 98.98
PRK11189296 lipoprotein NlpI; Provisional 98.98
PF1285434 PPR_1: PPR repeat 98.97
KOG1129478 consensus TPR repeat-containing protein [General f 98.96
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.96
KOG2076 895 consensus RNA polymerase III transcription factor 98.88
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 98.85
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.84
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 98.82
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.82
KOG1129478 consensus TPR repeat-containing protein [General f 98.8
KOG0495913 consensus HAT repeat protein [RNA processing and m 98.8
KOG0547 606 consensus Translocase of outer mitochondrial membr 98.73
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.69
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.69
KOG0547606 consensus Translocase of outer mitochondrial membr 98.69
PRK11189296 lipoprotein NlpI; Provisional 98.68
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.67
KOG2047 835 consensus mRNA splicing factor [RNA processing and 98.67
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.64
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.63
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.62
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.61
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 98.6
KOG2003 840 consensus TPR repeat-containing protein [General f 98.59
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.59
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.59
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 98.58
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 98.56
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 98.5
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.5
KOG1915677 consensus Cell cycle control protein (crooked neck 98.47
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.42
KOG1125579 consensus TPR repeat-containing protein [General f 98.4
PRK10370198 formate-dependent nitrite reductase complex subuni 98.38
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 98.36
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 98.34
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.33
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 98.31
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.31
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.3
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.29
PRK10370198 formate-dependent nitrite reductase complex subuni 98.28
KOG1128777 consensus Uncharacterized conserved protein, conta 98.26
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.24
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.24
PLN02789320 farnesyltranstransferase 98.21
PRK15359144 type III secretion system chaperone protein SscB; 98.21
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.2
KOG0495913 consensus HAT repeat protein [RNA processing and m 98.19
PF10037 429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 98.19
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 98.18
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 98.16
PRK15359144 type III secretion system chaperone protein SscB; 98.12
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 98.12
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.09
PF10037 429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 98.08
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.07
KOG1128 777 consensus Uncharacterized conserved protein, conta 98.07
KOG4340 459 consensus Uncharacterized conserved protein [Funct 98.07
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.06
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.03
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.0
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 97.99
PF06239228 ECSIT: Evolutionarily conserved signalling interme 97.98
PF06239228 ECSIT: Evolutionarily conserved signalling interme 97.97
KOG1125579 consensus TPR repeat-containing protein [General f 97.97
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 97.95
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.95
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.94
COG4783484 Putative Zn-dependent protease, contains TPR repea 97.94
PLN02789320 farnesyltranstransferase 97.92
KOG2047 835 consensus mRNA splicing factor [RNA processing and 97.91
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 97.9
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 97.89
KOG3060 289 consensus Uncharacterized conserved protein [Funct 97.88
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.87
COG4783484 Putative Zn-dependent protease, contains TPR repea 97.86
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 97.83
cd00189100 TPR Tetratricopeptide repeat domain; typically con 97.82
KOG4162 799 consensus Predicted calmodulin-binding protein [Si 97.82
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.81
PRK04841 903 transcriptional regulator MalT; Provisional 97.79
cd00189100 TPR Tetratricopeptide repeat domain; typically con 97.79
KOG4162799 consensus Predicted calmodulin-binding protein [Si 97.77
PRK14720 906 transcript cleavage factor/unknown domain fusion p 97.71
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.69
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.67
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 97.65
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 97.65
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.63
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.56
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.54
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.51
KOG3616 1636 consensus Selective LIM binding factor [Transcript 97.46
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.41
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.41
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.41
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.39
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.39
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.38
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.36
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.33
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.33
KOG2376 652 consensus Signal recognition particle, subunit Srp 97.29
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.27
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.27
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.22
KOG3060289 consensus Uncharacterized conserved protein [Funct 97.21
KOG4340 459 consensus Uncharacterized conserved protein [Funct 97.21
KOG1174 564 consensus Anaphase-promoting complex (APC), subuni 97.19
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 97.14
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 97.13
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.12
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.11
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.1
KOG2376 652 consensus Signal recognition particle, subunit Srp 97.06
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 97.05
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.01
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.0
PF12688120 TPR_5: Tetratrico peptide repeat 96.98
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 96.98
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.93
KOG3941 406 consensus Intermediate in Toll signal transduction 96.9
PRK10153517 DNA-binding transcriptional activator CadC; Provis 96.88
PF12688120 TPR_5: Tetratrico peptide repeat 96.85
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 96.84
PRK04841 903 transcriptional regulator MalT; Provisional 96.83
PRK10803263 tol-pal system protein YbgF; Provisional 96.8
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 96.8
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 96.75
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 96.71
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 96.7
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 96.68
COG4235287 Cytochrome c biogenesis factor [Posttranslational 96.68
PRK10803263 tol-pal system protein YbgF; Provisional 96.63
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 96.62
PF1337173 TPR_9: Tetratricopeptide repeat 96.61
PF1337173 TPR_9: Tetratricopeptide repeat 96.58
KOG3941406 consensus Intermediate in Toll signal transduction 96.53
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 96.38
KOG0553 304 consensus TPR repeat-containing protein [General f 96.35
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 96.31
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.31
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.28
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.27
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 96.22
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 96.03
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 95.95
PF13170297 DUF4003: Protein of unknown function (DUF4003) 95.87
KOG2796366 consensus Uncharacterized conserved protein [Funct 95.84
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 95.8
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 95.79
COG3629280 DnrI DNA-binding transcriptional activator of the 95.69
PRK15331165 chaperone protein SicA; Provisional 95.58
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 95.55
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 95.53
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 95.47
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 95.43
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 95.41
KOG2041 1189 consensus WD40 repeat protein [General function pr 95.38
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 95.32
KOG0553304 consensus TPR repeat-containing protein [General f 95.28
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 95.19
KOG2796366 consensus Uncharacterized conserved protein [Funct 95.04
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 95.03
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 95.0
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 94.72
PRK15331165 chaperone protein SicA; Provisional 94.69
COG4700251 Uncharacterized protein conserved in bacteria cont 94.68
COG3629280 DnrI DNA-binding transcriptional activator of the 94.68
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 94.63
COG4700251 Uncharacterized protein conserved in bacteria cont 94.41
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.39
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 94.36
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 94.34
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 94.3
KOG20411189 consensus WD40 repeat protein [General function pr 94.15
smart00299140 CLH Clathrin heavy chain repeat homology. 94.12
PF1342844 TPR_14: Tetratricopeptide repeat 94.11
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 93.71
PF1342844 TPR_14: Tetratricopeptide repeat 93.56
PF13281374 DUF4071: Domain of unknown function (DUF4071) 93.48
smart00299140 CLH Clathrin heavy chain repeat homology. 93.47
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 93.37
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 93.16
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.11
PF13170297 DUF4003: Protein of unknown function (DUF4003) 93.05
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 93.04
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 93.03
PF13281374 DUF4071: Domain of unknown function (DUF4071) 92.91
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 92.86
KOG4570 418 consensus Uncharacterized conserved protein [Funct 92.79
COG3118304 Thioredoxin domain-containing protein [Posttransla 92.45
KOG4570 418 consensus Uncharacterized conserved protein [Funct 92.31
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 92.27
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 91.87
PF13929292 mRNA_stabil: mRNA stabilisation 91.16
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 91.15
KOG4555175 consensus TPR repeat-containing protein [Function 91.11
KOG4555175 consensus TPR repeat-containing protein [Function 91.1
COG1747 711 Uncharacterized N-terminal domain of the transcrip 90.68
PF13512142 TPR_18: Tetratricopeptide repeat 90.58
PF1343134 TPR_17: Tetratricopeptide repeat 90.5
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 90.32
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 90.28
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 90.03
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 89.82
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 89.77
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 89.69
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 89.57
COG4649221 Uncharacterized protein conserved in bacteria [Fun 89.47
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 89.46
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 89.42
KOG1585308 consensus Protein required for fusion of vesicles 89.32
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 89.11
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 88.22
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 88.21
COG4455 273 ImpE Protein of avirulence locus involved in tempe 88.15
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 88.08
COG1729262 Uncharacterized protein conserved in bacteria [Fun 87.93
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 87.61
COG4649221 Uncharacterized protein conserved in bacteria [Fun 86.98
PF13929292 mRNA_stabil: mRNA stabilisation 86.64
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 86.39
COG4105254 ComL DNA uptake lipoprotein [General function pred 85.94
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 85.78
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 85.75
COG3118304 Thioredoxin domain-containing protein [Posttransla 85.74
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 85.64
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 85.63
PF11846193 DUF3366: Domain of unknown function (DUF3366); Int 85.37
PRK11906458 transcriptional regulator; Provisional 85.03
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 84.72
KOG4077149 consensus Cytochrome c oxidase, subunit Va/COX6 [E 84.5
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 84.23
TIGR02508115 type_III_yscG type III secretion protein, YscG fam 84.12
PF07163 309 Pex26: Pex26 protein; InterPro: IPR010797 This fam 83.95
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 83.87
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 83.7
KOG4077149 consensus Cytochrome c oxidase, subunit Va/COX6 [E 83.57
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 83.49
COG3898531 Uncharacterized membrane-bound protein [Function u 83.42
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 83.42
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 83.38
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 83.17
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 83.08
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 83.03
PF04097613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 82.97
PF1184848 DUF3368: Domain of unknown function (DUF3368); Int 82.17
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 81.15
KOG2610 491 consensus Uncharacterized conserved protein [Funct 80.3
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 80.14
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-55  Score=401.61  Aligned_cols=321  Identities=23%  Similarity=0.348  Sum_probs=303.7

Q ss_pred             CCCcchHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048780            1 MGRASGGFVLLGRILMSCFT--------------------------------PNMVTFNSLIKGLCTEGRILEAARLFKK   48 (325)
Q Consensus         1 ~g~~~~A~~l~~~~~~~~~~--------------------------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~   48 (325)
                      .|++++|+++|+.|.+.|+.                                ||..+|+.+|.+|++.|+++.|.++|++
T Consensus       383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~  462 (1060)
T PLN03218        383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRL  462 (1060)
T ss_pred             CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            36777788888888777642                                7889999999999999999999999999


Q ss_pred             HHhcCCCCCchhHHHHH---------HHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHhcCc----------hhhcCCC
Q 048780           49 LNVFCCDPNVITFNTLA---------LVALNLFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF----------MMDQGMR  109 (325)
Q Consensus        49 m~~~g~~~~~~~~~~l~---------~~a~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~~~~~  109 (325)
                      |.+.|+.||..+|+.++         +.|.++|++|.+.+   +.||..+|+.+|.+|++.|+          |...|+.
T Consensus       463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~  539 (1060)
T PLN03218        463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK  539 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence            99999999999999998         88999999999998   99999999999999999998          7778999


Q ss_pred             CChhhHHHHHHHHHccCcHHHHHHHHHHHHH--CCCCCCcccHHHHHHHHHh--------------hcCCCCCchhhHHH
Q 048780          110 PDVVTLNVMTDNLSKDGKMEEANCLLEVMIQ--RDVNPNTCTYNTLMDGFAW--------------WSKGCRHDVYSYNI  173 (325)
Q Consensus       110 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~--------------~~~~~~~~~~~~~~  173 (325)
                      ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++              ...+..|+..+|++
T Consensus       540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns  619 (1060)
T PLN03218        540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI  619 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence            9999999999999999999999999999986  6899999999999999997              56788999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH------------------HhCCCCCChHhHHHHHHHHHHcCC
Q 048780          174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFM------------------AINNVPPDSHVYTTYIDGLYKNGF  235 (325)
Q Consensus       174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~------------------~~~~~~~~~~~~~~l~~~~~~~~~  235 (325)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|+.++.                  ...++.|+..+|++||.+|++.|+
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~  699 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN  699 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999987                  456889999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHH
Q 048780          236 VLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLL  315 (325)
Q Consensus       236 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  315 (325)
                      +++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. ..|+.||..||+.++.+|.+.|++++|.++++
T Consensus       700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 78999999999999999999999999999999


Q ss_pred             HHHHcCCCCC
Q 048780          316 DMEETGLEPN  325 (325)
Q Consensus       316 ~m~~~g~~pd  325 (325)
                      +|.+.|+.||
T Consensus       779 ~M~k~Gi~pd  788 (1060)
T PLN03218        779 QAKEDGIKPN  788 (1060)
T ss_pred             HHHHcCCCCC
Confidence            9999999997

>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>PF13929 mRNA_stabil: mRNA stabilisation Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13929 mRNA_stabil: mRNA stabilisation Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>TIGR02508 type_III_yscG type III secretion protein, YscG family Back     alignment and domain information
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 4e-13
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 3e-10
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
 Score = 69.1 bits (167), Expect = 4e-13
 Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 34/218 (15%)

Query: 101 GFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAWW 160
           G      +      L           ++  A+ LL V   +                   
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ------------------R 157

Query: 161 SKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDS 220
            K     +  YN ++ G+ +    ++ V +   +   G+  D  +Y      +     D+
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 221 HVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHM 280
                 ++ + + G  L+A+                    L+    +   LK    +   
Sbjct: 218 GTIERCLEQMSQEGLKLQAL----------------FTAVLLSEEDRATVLKAVHKVKPT 261

Query: 281 LMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDME 318
               P L P V T  ++   + K+G+       L    
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.94
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.94
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.87
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.85
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.84
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.84
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.84
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 99.77
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.75
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.74
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.73
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.72
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.72
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.72
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.68
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.68
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.68
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.67
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 99.65
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.64
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.62
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.62
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.61
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.59
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.59
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.59
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.59
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.58
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.57
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.55
3u4t_A272 TPR repeat-containing protein; structural genomics 99.55
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.54
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.54
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.53
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.52
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.51
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.5
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.48
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.45
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.44
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.4
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.39
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.39
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.38
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.38
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.38
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.38
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.36
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.35
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.35
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.34
3u4t_A272 TPR repeat-containing protein; structural genomics 99.32
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.31
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.29
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.29
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.28
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.26
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.26
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.26
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.26
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.24
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.23
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.22
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.2
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.2
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.17
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.15
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.15
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.15
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.15
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.15
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.09
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 99.08
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.07
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.07
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.07
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.05
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.05
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.04
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.0
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.98
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.94
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 98.91
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.9
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.89
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 98.87
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 98.87
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 98.87
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 98.86
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 98.86
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 98.86
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 98.86
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 98.84
3q15_A378 PSP28, response regulator aspartate phosphatase H; 98.83
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.81
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.81
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 98.8
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 98.79
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 98.76
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.75
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 98.75
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.74
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 98.74
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.7
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.69
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 98.69
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 98.67
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.67
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 98.66
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.65
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.64
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.64
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.62
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.62
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.62
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.58
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.57
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.55
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.55
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.55
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.54
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 98.52
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 98.52
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.51
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.47
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.46
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.46
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.45
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.45
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.41
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.41
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.41
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.4
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.4
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.39
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.39
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.38
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.36
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 98.35
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.33
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.32
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.32
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 98.32
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.31
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 98.3
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.29
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.28
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.28
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.28
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 98.28
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.28
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.27
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.26
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.25
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.23
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.22
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 98.21
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.2
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.18
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.17
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.15
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.15
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.13
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.13
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.11
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.1
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.1
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.1
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.08
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.08
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.03
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.02
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.01
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.0
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.0
3k9i_A117 BH0479 protein; putative protein binding protein, 97.98
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 97.96
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.94
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 97.93
2c2l_A 281 CHIP, carboxy terminus of HSP70-interacting protei 97.91
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 97.91
3k9i_A117 BH0479 protein; putative protein binding protein, 97.85
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 97.75
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 97.73
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 97.71
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 97.67
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 97.67
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.61
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 97.59
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.57
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 97.56
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.54
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.52
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 97.51
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.5
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.47
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.46
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 97.45
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.41
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.37
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.36
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 97.32
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.17
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 97.17
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 96.89
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 96.84
3qww_A433 SET and MYND domain-containing protein 2; methyltr 96.83
3qww_A433 SET and MYND domain-containing protein 2; methyltr 96.83
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 96.72
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.64
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 96.55
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 96.53
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 96.43
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 96.42
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 96.24
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.19
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 96.16
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.05
1pc2_A152 Mitochondria fission protein; unknown function; NM 95.89
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 95.82
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 95.81
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 95.08
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 95.03
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 94.97
1pc2_A152 Mitochondria fission protein; unknown function; NM 94.6
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 94.41
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 94.33
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 94.22
2ff4_A 388 Probable regulatory protein EMBR; winged-helix, te 94.11
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 93.56
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 93.51
2ff4_A 388 Probable regulatory protein EMBR; winged-helix, te 93.1
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 92.68
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 92.06
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 91.92
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 91.89
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 91.4
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 91.26
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 91.22
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 90.55
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 90.1
3lpz_A336 GET4 (YOR164C homolog); protein targeting, tail-an 89.53
2uwj_G115 Type III export protein PSCG; virulence, chaperone 88.86
2p58_C116 Putative type III secretion protein YSCG; type III 88.67
4fhn_B 1139 Nucleoporin NUP120; protein complex,structural pro 88.34
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 88.25
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 88.23
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 87.01
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 85.63
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 85.57
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 84.33
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 83.53
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 82.13
4b4t_R 429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 81.96
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 81.38
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
Probab=100.00  E-value=3.7e-35  Score=253.46  Aligned_cols=219  Identities=14%  Similarity=0.109  Sum_probs=173.5

Q ss_pred             CCc-chHHHHHHHHHhcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 048780            2 GRA-SGGFVLLGRILMSCFTPNM-VTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPNVITFNTLALVALNLFEEMVNEF   79 (325)
Q Consensus         2 g~~-~~A~~l~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~a~~~~~~~~~~~   79 (325)
                      |+. ..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|                          
T Consensus         3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--------------------------   56 (501)
T 4g26_A            3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG--------------------------   56 (501)
T ss_dssp             ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--------------------------
T ss_pred             ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence            444 3455666777777766554 468999999999999999999999999877                          


Q ss_pred             CCccCccHHHHHHHHHHHHhcCchhhcCCCCChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 048780           80 GVICKPDVVTCTNIIDGLCKDGFMMDQGMRPDVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNTCTYNTLMDGFAW  159 (325)
Q Consensus        80 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~  159 (325)
                         ++||..|||+||.+|++.+.....                .+.+.++.|.++|++|...|+.|              
T Consensus        57 ---v~pd~~tyn~Li~~c~~~~~~~~~----------------~~~~~l~~A~~lf~~M~~~G~~P--------------  103 (501)
T 4g26_A           57 ---VQLSQYHYNVLLYVCSLAEAATES----------------SPNPGLSRGFDIFKQMIVDKVVP--------------  103 (501)
T ss_dssp             ---CCCCHHHHHHHHHHHTTCCCCSSS----------------SCCHHHHHHHHHHHHHHHTTCCC--------------
T ss_pred             ---CCCCHhHHHHHHHHHHhCCchhhh----------------hhcchHHHHHHHHHHHHHhCCCC--------------
Confidence               456666666667776665543221                23456899999999999999888              


Q ss_pred             hcCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHH
Q 048780          160 WSKGCRHDVYSYNILINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEA  239 (325)
Q Consensus       160 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  239 (325)
                             |..+|++||.+|++.|++++|.++|++|.+.|+.|                 |..+|+++|.+|++.|++++|
T Consensus       104 -------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-----------------d~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          104 -------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-----------------RLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             -------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred             -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------ccceehHHHHHHHHCCCHHHH
Confidence                   78889999999999999999999999999988666                 555556669999999999999


Q ss_pred             HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHcc
Q 048780          240 MKVFSAIGNHKCVLTIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKE  304 (325)
Q Consensus       240 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~  304 (325)
                      .++|++|.+.|+.||..||++||.+|++.|++++|.+++++|. +.|..|+..||+.++..|...
T Consensus       160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999 889999999999999998764
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Back     alignment and structure
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} Back     alignment and structure
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.73
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.68
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.51
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.4
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.15
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.06
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.01
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 98.98
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 98.87
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 98.78
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 98.65
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.55
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 98.52
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.44
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.42
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.41
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.41
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.39
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.36
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.34
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.29
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 98.27
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.26
d1hz4a_366 Transcription factor MalT domain III {Escherichia 98.25
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.16
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.16
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.13
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.07
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 97.83
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.8
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.8
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.7
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 97.68
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 97.68
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.63
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.63
d1zbpa1 264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 97.63
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.59
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.59
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 97.59
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.47
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.45
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.43
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 97.42
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.38
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 97.24
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.03
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 96.74
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 96.73
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 96.37
d1b89a_ 336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.35
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 96.19
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 95.8
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 95.48
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 94.94
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 94.93
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 93.74
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 93.11
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 92.34
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 90.59
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 87.94
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 85.36
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.8e-14  Score=116.74  Aligned_cols=290  Identities=13%  Similarity=0.047  Sum_probs=206.3

Q ss_pred             CCCcchHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chhHHHHH---------HHHHH
Q 048780            1 MGRASGGFVLLGRILMSCFTPNMVTFNSLIKGLCTEGRILEAARLFKKLNVFCCDPN-VITFNTLA---------LVALN   70 (325)
Q Consensus         1 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~---------~~a~~   70 (325)
                      .|++++|++.++.+.+.. +-+...+..+...|.+.|++++|...|++..+.  .|+ ..+|..+.         +.|++
T Consensus        12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~~~A~~   88 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcccccccc
Confidence            389999999999998875 456788999999999999999999999999876  343 34444443         78888


Q ss_pred             HHHHHHHhcCCccCccHHHHHHHHHHHHhcCc------------------------------------------hhhcCC
Q 048780           71 LFEEMVNEFGVICKPDVVTCTNIIDGLCKDGF------------------------------------------MMDQGM  108 (325)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------------------------------------------~~~~~~  108 (325)
                      .+....+..    +.+...+............                                          ......
T Consensus        89 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          89 HYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            888887765    2233333222222222221                                          000111


Q ss_pred             CC-ChhhHHHHHHHHHccCcHHHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHh-------------hcCCCCCchhhHHH
Q 048780          109 RP-DVVTLNVMTDNLSKDGKMEEANCLLEVMIQRDVNPNT-CTYNTLMDGFAW-------------WSKGCRHDVYSYNI  173 (325)
Q Consensus       109 ~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~-------------~~~~~~~~~~~~~~  173 (325)
                      .| +...+..+...+...|++++|...++...+.  .|+. ..+..+...+..             .......+...+..
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  242 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence            22 3556777777888889999999988887765  3332 233333333322             11112234556667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHhCCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCc
Q 048780          174 LINGYCKDRNVEDAVSLCREMLSEGIRADATTYNTLFMAINNVPPDSHVYTTYIDGLYKNGFVLEAMKVFSAIGNHKCVL  253 (325)
Q Consensus       174 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~  253 (325)
                      +...+.+.|++++|...|++..+.                  .+.+..+|..+...+...|++++|.+.++...... +.
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  303 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIEL------------------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT  303 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT------------------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cc
Confidence            777788888888888888877764                  23456778888999999999999999999887664 45


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCcHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048780          254 TIETCNCLIDGLCKIGRLKIAWDIFHMLMQNPGLTPDVVTYNIMIHGFCKEGQHQKANGLLLDMEET  320 (325)
Q Consensus       254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  320 (325)
                      +...+..+...+.+.|++++|...|++..+..  +-+..++..+..+|.+.|++++|.+.+++..+.
T Consensus       304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77888999999999999999999999987322  234677888999999999999999999988753
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure