Citrus Sinensis ID: 048793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680---
Protein Sequence
MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLDARSSSTTTVTTTAMTNSRIVLPS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcHHcHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccHccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEccccccccccccccccccccccccccHccccccHHHccccEEEEccccccHHHHHHHHHcccccccccccEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHEccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mavspqifpprkrrpsagafisptlsdLKLVESLLILSQEvssmkplqFLLQRSCLSIIRKVKLLSLFFEELLANqvsffspptvlcFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLstlldimplqelrlsqDVEDVVVLIKKQCskrtkgalvdskddkLRLQVLTTLDQikkeivpdhSILKQMFEslglrnssaCKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFgasvqksdsrlrrkksasdanvpadfrcpislelmrnpvvvatgqtydrqSISLWIEsghntcpktgqtlahtNLVTNTALKNLIALWCreqripfdyaassekvngvVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSlsktdsdsRACIAEAGAIALLARhlgpdtasrlpnlqvNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDlvkggptssKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAgldarssstttvtttamtnsrivlps
Flexible Loop (DISEMBL)
mavspqifpprkrrpsagafiSPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKkqcskrtkgalvdskddklrlQVLTTldqikkeivpdhSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGasvqksdsrlrrkksasdanvpadfrcpislelmrNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIfslsgvhahrktlgrktrvvkGLMDlvkggptsskrdALVAILnlagdretvgrLVERGIVEIVAeamdvlpeeSVTILEAVVKRGGLTAIVAAYNTIKKLCILLRegsdtsreSAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRwaagldarssstttvtttamtnsrivlps
Low Complexity Region (SEG)
MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKeeiesleeeiQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTararrkaaallrilrrwaaglDARssstttvtttamtnsRIVLPS
Disordered region (IsUnstruct)
*******************FISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESL****************************HFAAALIGLVRYTKCVLFGAS********************ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLA************Y************RACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP***KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREG*******AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGL************************
Disordered Region (DISOPRED)
*******************FISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELL************LCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQC***********KDDKLRLQVL******************QMFESLGLRNSSACKE***********************LIGLVRYT****************************ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAAS********TNKAALEATKMTASFLINKLAT****EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA**LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI********************************
Disordered Region (DISEMBL)
MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQ*********VDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIE*************SKHFAAALIGLVRYTKCVLFGASV****************NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGL***********TTAMTNSRIVLPS
Disordered Region (DISPRO)
*******************FISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGA****************DANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD********************TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAG*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLDARSSSTTTVTTTAMTNSRIVLPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	683	2.2.26 [Sep-21-2011]
Q9LZW3	674	U-box domain-containing p	yes	no	0.964	0.977	0.598	0.0
Q9C7R6	729	U-box domain-containing p	no	no	0.920	0.862	0.365	1e-100
Q6EUK7	728	U-box domain-containing p	no	no	0.916	0.859	0.354	1e-100
O80742	686	U-box domain-containing p	no	no	0.885	0.881	0.319	3e-73
Q8VZ40	632	U-box domain-containing p	no	no	0.877	0.947	0.333	2e-70
Q9SNC6	660	U-box domain-containing p	no	no	0.890	0.921	0.316	3e-68
Q681N2	660	U-box domain-containing p	no	no	0.833	0.862	0.303	1e-66
Q5VRH9	611	U-box domain-containing p	no	no	0.853	0.954	0.310	2e-62
Q8GUG9	612	U-box domain-containing p	no	no	0.849	0.947	0.298	1e-57
Q9XIJ5	697	U-box domain-containing p	no	no	0.891	0.873	0.268	2e-57

>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/678 (59%), Positives = 512/678 (75%), Gaps = 19/678 (2%)

Query: 9   PPRKRRP-SAGAFISPTLS-DLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLS 66
           P RKRRP   G+F SP LS D KL  SL + S E+SSM+PL F+L+R+ LS+IRKVK+L+
Sbjct: 10  PARKRRPLVVGSFESPKLSSDTKLTRSLFLASHEISSMQPLPFILRRNSLSLIRKVKILA 69

Query: 67  LFFEELLA--NQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124
             F+ELL   +Q+  +S    LCFEEM IV+QR+K+LI+DC   SK+WLL+QI+  A NF
Sbjct: 70  SVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRVSKLWLLLQIDIVAFNF 129

Query: 125 HELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTL 184
           HEL  DLST+LDI+PL +  LS D +D++ L+ KQCS   +   VD++D  LR +V  T+
Sbjct: 130 HELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQ--FVDARDVALRRKVTDTI 187

Query: 185 DQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVR 244
             IK +I PDHS L ++F  LGL +S++  +EI+ LE+EIQ+Q D +SK  AA+LIGLVR
Sbjct: 188 AGIKHQISPDHSTLIKIFNDLGLSDSASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVR 247

Query: 245 YTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSIS 304
           Y+KCVL+G S    D   RR +S SDAN+PADFRCPI+LELMR+PVVVATGQTYDR+SI 
Sbjct: 248 YSKCVLYGPSTPAPD--FRRHQSLSDANIPADFRCPITLELMRDPVVVATGQTYDRESID 305

Query: 305 LWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKA 364
           LWI+SGHNTCPKTGQ L HT+LV N ALKNLI LWCR+Q+IPF+              K 
Sbjct: 306 LWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGG--GEPAPCKE 363

Query: 365 ALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG 424
           A+E TKM  SFLI KL+ + S    N  V+ELR+L+K+D+ +RACIAEAGAI  L R+L 
Sbjct: 364 AVEFTKMMVSFLIEKLSVADS----NGVVFELRALAKSDTVARACIAEAGAIPKLVRYL- 418

Query: 425 PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT 484
              A+  P+LQ+NAVTTILNLSILE NKTRIMET+GALNGVIEVLRSGATWEAK NAAAT
Sbjct: 419 ---ATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAAT 475

Query: 485 IFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG 544
           +FSL+GV A+R+ LGRK RVV GL+DL K GPTSSKRDALVAILNL  +RE VGR VE G
Sbjct: 476 LFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAG 535

Query: 545 IVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAAT 604
           ++    +A   LPEE+V ++EAVV+RGGL A+ AA++ I+ L  ++REG+DT+RESAAAT
Sbjct: 536 VMGAAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADTTRESAAAT 595

Query: 605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLDARSS 664
           LVT+CRKGGSE+VA++AA+PGIERVIWE++ +GTAR  RKAA+L+R LRRWAAG D  ++
Sbjct: 596 LVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLMRYLRRWAAG-DTHNT 654

Query: 665 STTTVTTTAMTNSRIVLP 682
           +  T +    T SRI  P
Sbjct: 655 AAETQSIVVPTPSRIFSP 672

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 247/675 (36%), Positives = 374/675 (55%), Gaps = 46/675 (6%)

Query: 19  AFISPT-LSDLKLVESLLILSQEV-SSMKPLQFLLQR-SCLSIIRKVKLLSLFFEELLAN 75
           AF++P  LS + LV++L  +S EV S    ++F  QR +  S+IRK+++  + FE L+ +
Sbjct: 20  AFLAPVDLSGVALVQTLASISSEVVSCFTSVRFSFQRKNARSLIRKIEIFVVLFEFLVDS 79

Query: 76  Q---------------VSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETA 120
                            S      +LC +E+Y++L R K L++ C   SK+WLL+Q  + 
Sbjct: 80  NWGSTTTRTRARRRSKSSVSESTALLCLKELYLLLYRSKILVDYCAQSSKLWLLLQNPSI 139

Query: 121 ANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV 180
           +  FH+L  ++STLLD++P+ +L LS D+ + + L+++Q   R     +D  D+ LR   
Sbjct: 140 SGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQ--SRKARLYIDKNDESLRESF 197

Query: 181 LTTLDQIKKEIVPDHSILKQMF-ESLGLRNSSACKEEIESLEEEIQNQTD--QKSKHFAA 237
            + LD  +   +P    L+  F E LG+R+S +C+ EIE LEE+I N     + +     
Sbjct: 198 YSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEEQIVNHDGDLEPTGSVIN 257

Query: 238 ALIGLVRYTKCVLFGAS-------VQKSDSRLRRKKSASDAN-----VPADFRCPISLEL 285
             + + RY + +LFG         ++ +  + R+   A +       VP DF CPISL+L
Sbjct: 258 GFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQEIGDTFITVPKDFVCPISLDL 317

Query: 286 MRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI 345
           M +PV+++TGQTYDR SI+ WIE GH TCPKTGQ L  + +V N ALKNLI  WC    I
Sbjct: 318 MTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGI 377

Query: 346 PFDYA---ASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKT 402
            ++     + +E     +  KAA+EA K T S LI  LA   S  A   A  E+R L+KT
Sbjct: 378 SYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADG-SQAAQTVAAREIRLLAKT 436

Query: 403 DSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGAL 462
             ++RA IAEAGAI  L R L  + A      Q N+VT +LNLSI E NK+RIME    L
Sbjct: 437 GKENRAYIAEAGAIPHLCRLLTSENAI----AQENSVTAMLNLSIYEKNKSRIMEEGDCL 492

Query: 463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD 522
             ++ VL SG T EA+ NAAAT+FSLS VH ++K +    + V+ L  L++ G    K+D
Sbjct: 493 ESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKD 552

Query: 523 ALVAILNLAGDRETVGRLVERGIVEIVAEAM---DVLPEESVTILEAVVKRGGLTAIVAA 579
           A+ A+ NL+   +   R++E G V  +  A+    V  E +  +   V +  G  AI   
Sbjct: 553 AVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKE 612

Query: 580 YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTA 639
            + +  L  ++R G+   +E+A A L+ +CR GG+ +   +   P I  ++  L+ +GT 
Sbjct: 613 DSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTK 672

Query: 640 RARRKAAALLRILRR 654
           RARRKAA+L R+ +R
Sbjct: 673 RARRKAASLARVFQR 687

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=PUB4 PE=2 SV=1

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/663 (35%), Positives = 374/663 (56%), Gaps = 37/663 (5%)

Query: 18  GAFISPT-LSDLKLVESLLILSQE-VSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLAN 75
           GAF +PT L+   L+ ++  L+   V+  +P     +R+  ++ R++ LLS   E +L +
Sbjct: 29  GAFFAPTGLAGATLLRAVASLAASLVAGARPPS--QRRNVDALARRLALLSAILESILLD 86

Query: 76  QVSFFSPPTV--LCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLST 133
             +  +      LCF E+Y+VL R + L+    +  + W L++    A +F +L  +L+ 
Sbjct: 87  TAAAGAFSDAANLCFRELYVVLFRAELLVSYVASAGRAWALLRSPHLAASFRDLDAELAV 146

Query: 134 LLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVP 193
           +LD++P   LRLS D   ++ L++  C  R      D  +  LR +++  L Q      P
Sbjct: 147 VLDVLPAASLRLSHDATGLLDLLRAHCRCRAPAQYHDPDEAALRERLMDALRQFDLGQPP 206

Query: 194 DHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGA 253
           DH  L+ +   +G+  +++C+ EI+ LEE+I +Q +        +++ L+RY    +F  
Sbjct: 207 DHPSLQSLLADMGISTAASCRAEIDYLEEQILSQEEDTDLPLVGSVLALLRYCLFAVFDP 266

Query: 254 SVQKS---------DSRLRRKKSASDAN--VPADFRCPISLELMRNPVVVATGQTYDRQS 302
           S  K+           RL       D +  VP +F CPISL+LMR+PVV +TGQTYDR S
Sbjct: 267 SNAKALRDWPLSGNRQRLLSIGGGDDTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPS 326

Query: 303 ISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVV-- 360
           I  WIE GH+TCP +GQTLA   LV N AL++LI+ WC    + +D   S+E +   V  
Sbjct: 327 IIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQWCGVYGLQYDSPESNEGMAECVAA 386

Query: 361 --TNKAALEATKMTASFLINKLAT-SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIA 417
             +++AA+EA K TA  L+  L   S++++A   A  E+R L+KT   +RA IA+ GAI 
Sbjct: 387 SCSSRAAMEANKATARILVRMLEDGSENVKAV--AAKEIRLLAKTGKQNRAFIADLGAIP 444

Query: 418 LLARHLGPDTASRLPN---LQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGAT 474
           LL R L       L N    Q NAVT +LNLSI E NK RIME EG L  ++ VL++G T
Sbjct: 445 LLCRLL-------LSNDWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQNGWT 497

Query: 475 WEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR 534
            EAK NAAAT+FSLS VH  +K +  +   V+ L  ++  G +  K+DA++A+ NL+   
Sbjct: 498 TEAKENAAATLFSLSVVHNFKKLIMNEPGAVEELASMLTKGTSRGKKDAVMALFNLSTHP 557

Query: 535 ETVGRLVERGIVEIVAEAM--DVLPEESVTILEAVVKRGGLTAIVAAYNT-IKKLCILLR 591
           E+  R++E   V  + +++  D + EE+   L  ++K+  +  +V +  T I  L  L+R
Sbjct: 558 ESSARMLESCAVVALIQSLRNDTVSEEAAGALALLMKQPSIVHLVGSSETVITSLVGLMR 617

Query: 592 EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI 651
            G+   +E+A + L  ICR+GGS +V  +A +PG+  VI  +  +GT RA++KA+ ++++
Sbjct: 618 RGTPKGKENAVSALYEICRRGGSALVQRVAKIPGLNTVIQTITLNGTKRAKKKASLIVKM 677

Query: 652 LRR 654
            +R
Sbjct: 678 CQR 680

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1

 Score =  277 bits (708), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 210/658 (31%), Positives = 343/658 (52%), Gaps = 53/658 (8%)

Query: 30  LVESLLILSQEVSSMKPLQFLL-QRSCLSIIRKVKLLSLFFEELLANQVSFFSPP----T 84
           LV+SLL L+ E+ S KP  F   +RS    +R V+ L +FFEEL   Q+   S P     
Sbjct: 29  LVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLVIFFEELRI-QIRVGSIPAGRSV 87

Query: 85  VLCFEEMYIVLQRMKTLIEDC-YNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQEL 143
           +L   E++++ Q++K L++DC  +G+K+++LM     + +F +LT  +ST LD  P++ +
Sbjct: 88  ILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLDTFPVRSV 147

Query: 144 RLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFE 203
            L  +V +++ L+ +Q   R   A  D  D +    V    +  +  I P+   + ++ +
Sbjct: 148 DLPGEVNELIYLVMRQT--RKSEARPDRDDKRAIDSVYWFFNLFENRINPNSDEILRVLD 205

Query: 204 SLGLRNSSACKEEIESLEEEIQNQTDQKSK---HFAAALIGLVRYTKCVLF-GASVQKSD 259
            +G+R    C +EI+ L EEI     +KS       + L+G + Y +CV+  G  V   +
Sbjct: 206 HIGVRKWRDCVKEIDFLREEIS--VGKKSNIEIELLSNLMGFICYCRCVILRGIDVDDEE 263

Query: 260 SRLRRKK--SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKT 317
                         NV  D RCPISLE+M +PVV+ +G TYDR SI+ W  SG+ TCPKT
Sbjct: 264 KDKEEDDLMMVRSLNVD-DLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKT 322

Query: 318 GQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLI 377
           G+TL  T LV N ++K +I  + ++  +        +K   V  + AA EA K+TA FL 
Sbjct: 323 GKTLVSTVLVDNFSVKQVIQSYSKQNGVVM--GQKGKKKVDVAESLAAEEAGKLTAEFLA 380

Query: 378 NKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVN 437
            +L      E    A+ E+R L+KT +  R+C+ EAG +  L + L  D     P +Q N
Sbjct: 381 GELIKGDEEEMVK-ALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDD----PRIQEN 435

Query: 438 AVTTILNLSILEANKTRIM-ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRK 496
           A+  I+NLS   A KTRI+ E  G L  ++EVL  GA  E++  AAA +F LS +  + +
Sbjct: 436 AMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAAAALFYLSSLGDYSR 495

Query: 497 TLGRKTRVVKGLMDLVKGGPT--SSKRDALVAILNLAGDR-ETVGRLVERGIVEIV---- 549
            +G  +  + GL+ +VK      S+KR+AL+AI +L  ++ +   R++  GIV ++    
Sbjct: 496 LIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAAGIVPVLLDLV 555

Query: 550 --AEAMDVLPEESVTILE----------AVVKRGGLTAIVAAYNTIKKLCILLREGSDTS 597
              E  D +  +S+ IL           +V++RGGL   V    +         E S  +
Sbjct: 556 KSEEISDGVTADSMAILAKMAEYPDGMISVLRRGGLKLAVKILGS--------SEVSPAT 607

Query: 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655
           ++   A L+ +C  GGS++V  +A  P I   ++    +G     +KA+AL++++  +
Sbjct: 608 KQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASALIKMIHEF 665

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  267 bits (683), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 212/635 (33%), Positives = 333/635 (52%), Gaps = 36/635 (5%)

Query: 29  KLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCF 88
           +LV+S+    +E+S     +  + +    ++R++ LLS FFEEL+   V       +  F
Sbjct: 15  RLVDSV----KEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVEL-KKDQITGF 69

Query: 89  EEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQD 148
           E M I L     L      GSK++ L   ++    F ++T+++   L  +P +++ +S++
Sbjct: 70  EAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEE 129

Query: 149 VEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR 208
           V + V L+  Q  KR K    +S      LQ+   L   +  + PD  ILK++ + L L 
Sbjct: 130 VREQVQLLHFQF-KRAKERWEESD-----LQLSHDLAMAENVMDPDPIILKRLSQELQLT 183

Query: 209 NSSACKEEIESLEEEI---QNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRK 265
                K+E  ++ E         D   +  ++ L  LV +                + R 
Sbjct: 184 TIDELKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTMESSDPDPSTGSRIVSRH 243

Query: 266 KSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325
           +S     +P  FRCPISLELM++PV+V+TGQTY+R SI  W+++GH TCPK+ +TL H  
Sbjct: 244 RSPV---IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 300

Query: 326 LVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQS 385
           L  N  LK+LIALWC    I       S +   +  + ++ +  +     L+ KLA   +
Sbjct: 301 LTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSS-DCDRTFVLSLLEKLANG-T 358

Query: 386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL-GPDTASRLPNLQVNAVTTILN 444
            E    A  ELR L+K + D+R CIAEAGAI LL   L  PD     P  Q ++VT +LN
Sbjct: 359 TEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPD-----PRTQEHSVTALLN 413

Query: 445 LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRV 504
           LSI E NK  I++  GA+  ++EVL++G + EA+ NAAAT+FSLS V    K        
Sbjct: 414 LSINEGNKGAIVDA-GAITDIVEVLKNG-SMEARENAAATLFSLS-VIDENKVAIGAAGA 470

Query: 505 VKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVE----IVAEAMDVLPEES 560
           ++ L+ L++ G    K+DA  AI NL   +    R V+ GIV+    ++ +A   + +E+
Sbjct: 471 IQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEA 530

Query: 561 VTILEAV-VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVAD 619
           + IL  +   + G TAI  A  +I  L  ++R GS  +RE+AAA L  +C  G  E + +
Sbjct: 531 LAILAILSTNQEGKTAIAEA-ESIPVLVEIIRTGSPRNRENAAAILWYLC-IGNIERL-N 587

Query: 620 IAAVPGIERVIWELMESGTARARRKAAALLRILRR 654
           +A   G +  + EL E+GT RA+RKAA+LL ++++
Sbjct: 588 VAREVGADVALKELTENGTDRAKRKAASLLELIQQ 622

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  260 bits (664), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 202/639 (31%), Positives = 330/639 (51%), Gaps = 31/639 (4%)

Query: 32  ESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEM 91
           +SL+ +  E++++   +  +++ C ++ R++KLL   FEE+  +     S  T+     +
Sbjct: 10  QSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESN-EPISEDTLKTLMNL 68

Query: 92  YIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVED 151
              +   K  ++ C  GSK++L+M+ E   +   E+++ L   L  +P +EL +S +V +
Sbjct: 69  KEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVRE 128

Query: 152 VVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSS 211
            V L+  Q  +R KG  VD  DD+L  + L +L     ++     +L+++ + L L    
Sbjct: 129 QVELVLSQF-RRAKGR-VDVSDDEL-YEDLQSLCNKSSDVDAYQPVLERVAKKLHLMEIP 185

Query: 212 ACKEEIESLEEEIQN---QTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSA 268
              +E  +L E + +      +  +  A  L  +  + +        QK     R     
Sbjct: 186 DLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQT 245

Query: 269 SDAN------VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322
           S A       +P DFRCPISLE+MR+PV+V++GQTY+R  I  WIE GH+TCPKT Q L 
Sbjct: 246 STAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALT 305

Query: 323 HTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLAT 382
            T L  N  L++LIA WC    I      SS +   V +  +  EA K+    L+ +LA 
Sbjct: 306 STTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIED--LMWRLAY 363

Query: 383 SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTT 441
               E    A  E+R L+K ++D+R  IAEAGAI LL   L  PD+      +Q ++VT 
Sbjct: 364 GNP-EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDS-----RIQEHSVTA 417

Query: 442 ILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK 501
           +LNLSI E NK  I+ + GA+ G+++VL+ G + EA+ NAAAT+FSLS +  ++ T+G  
Sbjct: 418 LLNLSICENNKGAIV-SAGAIPGIVQVLKKG-SMEARENAAATLFSLSVIDENKVTIG-A 474

Query: 502 TRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV----EIVAEAMDVLP 557
              +  L+ L+  G    K+DA  A+ NL   +   G+ +  G++     ++ E    + 
Sbjct: 475 LGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMV 534

Query: 558 EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV 617
           +E++ IL  +       AI+ + + +  L   +R GS  +RE+AAA LV +C      +V
Sbjct: 535 DEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLV 594

Query: 618 ADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA 656
              A   G+   + +L  +GT R +RKAA LL  + R A
Sbjct: 595 E--AQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLA 631

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 332/616 (53%), Gaps = 47/616 (7%)

Query: 52  QRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM 111
           Q+ C +++R++K+L  F +E+      F SP        +  V    K L+E C NGSK+
Sbjct: 75  QKECFNLVRRLKILIPFLDEIRG----FESPSCKHFLNRLRKVFLAAKKLLETCSNGSKI 130

Query: 112 WLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDS 171
           ++ +  ET    FH +   L+ +L   P  EL +S D +D +  + KQ  K  +    D+
Sbjct: 131 YMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAKDEIDSLCKQLKKAKRRT--DT 188

Query: 172 KDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQT--D 229
           +D +L + ++    +       D +I++++ + L L+     K E  +++  IQ++   +
Sbjct: 189 QDIELAVDMMVVFSKTDPRNA-DSAIIERLAKKLELQTIDDLKTETIAIQSLIQDKGGLN 247

Query: 230 QKSKHFAAALIGLVRYTKC-----VLFGASVQKSDSRLRRKKSASDANVPADFRCPISLE 284
            ++K     L+   +  +      +L+   + K+ ++      ++   +P +F CPI+LE
Sbjct: 248 IETKQHIIELLNKFKKLQGLEATDILYQPVINKAITK------STSLILPHEFLCPITLE 301

Query: 285 LMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344
           +M +PV++ATGQTY+++SI  W ++GH TCPKT Q L H +L  N ALKNLI  WC +  
Sbjct: 302 IMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKN- 360

Query: 345 IPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS 404
              ++    ++V+    N+      K   S L+  L++SQ +E    +V ++R L++ + 
Sbjct: 361 ---NFKIPEKEVSPDSQNE-----QKDEVSLLVEALSSSQ-LEEQRRSVKQMRLLARENP 411

Query: 405 DSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALN 463
           ++R  IA AGAI LL + L  PD+      +Q NAVTT+LNLSI E NK +++  EGA+ 
Sbjct: 412 ENRVLIANAGAIPLLVQLLSYPDSG-----IQENAVTTLLNLSIDEVNK-KLISNEGAIP 465

Query: 464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA 523
            +IE+L +G   EA+ N+AA +FSLS +  ++ T+G  +  +  L+DL++ G    K+DA
Sbjct: 466 NIIEILENG-NREARENSAAALFSLSMLDENKVTIGL-SNGIPPLVDLLQHGTLRGKKDA 523

Query: 524 LVAILNLAGDRETVGRLVERGIVE-----IVAEAMDVLPEESVTILEAVVKRGGLTAIVA 578
           L A+ NL+ +    GR ++ GIV+     +  + + ++ E    +L       G  AI  
Sbjct: 524 LTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAI-G 582

Query: 579 AYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638
             + I+ L   +R+G+  ++E A + L+ +     S ++A  A   G+   + E+  SGT
Sbjct: 583 QLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILA--ALQFGVYEYLVEITTSGT 640

Query: 639 ARARRKAAALLRILRR 654
            RA+RKA AL++++ +
Sbjct: 641 NRAQRKANALIQLISK 656

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  240 bits (613), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 323/631 (51%), Gaps = 48/631 (7%)

Query: 37  LSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQ 96
           ++ E++++   +  L+R C  + R+V+LL+   + L A+  S  S P       +   L 
Sbjct: 5   VADEIAALPEPRGPLRRPCADLSRRVRLLAPLLDHLPASSSSSSSTP-------LADALG 57

Query: 97  RMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLI 156
             + L+    +GSK+   M+ +   + F  +   +   LD +P     + Q+V++ V L+
Sbjct: 58  AARDLLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALV 117

Query: 157 KKQ---CSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSAC 213
             Q    S RT     D  D +L + +   L     +   D ++L ++   L L   +  
Sbjct: 118 HSQFQRASTRT-----DPPDTQLSMDLAWAL----TDNPSDPALLTRISHKLQLHTMADM 168

Query: 214 KEEIESLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDAN- 272
           K E  +L   + +   +           L +   CV+       +D+   R  S    + 
Sbjct: 169 KNESIALHNMVISTAGEPDGCVDQMSSLLKKLKDCVV--TEDHANDALTTRSASIKHRSP 226

Query: 273 -VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTA 331
            +P +FRCPISLELM++PV+V++GQTY+R  I  W++SGH TCPKT Q L+HT+L  N  
Sbjct: 227 IIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286

Query: 332 LKNLIALWCREQRI--PFDYAASSEKVNGVVTNKAALEATKMTASF--LINKLATSQSME 387
           LK+LI+ WC    I  P +   S +K       KAA  +    A    L+N+L  S + +
Sbjct: 287 LKSLISQWCEANGIELPKNKQNSRDK-------KAAKSSDYDHAGLVSLMNRL-RSGNQD 338

Query: 388 AANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI 447
               A  E+R L+K + ++R CIAEAGAI LL   L    +S  P  Q +AVT +LNLSI
Sbjct: 339 EQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLL----SSSDPRTQEHAVTALLNLSI 394

Query: 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKG 507
            E NK  I+++  A+  ++EVL++G + E + NAAAT+FSLS V  ++ T+G     +  
Sbjct: 395 HENNKASIVDSH-AIPKIVEVLKTG-SMETRENAAATLFSLSVVDENKVTIG-AAGAIPP 451

Query: 508 LMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV----EIVAEAMDVLPEESVTI 563
           L++L+  G    K+DA  AI NL   +    R V+ GIV      + +    + +E++++
Sbjct: 452 LINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSL 511

Query: 564 LEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAV 623
           L  +        ++A    I  L  +++ GS  +RE+AAA L  +C     + +A  AA 
Sbjct: 512 LSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAA- 570

Query: 624 PGIERVIWELMESGTARARRKAAALLRILRR 654
            G+E  + EL E+GT RA+RKA+++L ++ +
Sbjct: 571 -GVEDALKELSETGTDRAKRKASSILELMHQ 600

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 199/666 (29%), Positives = 319/666 (47%), Gaps = 86/666 (12%)

Query: 17  AGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLAN- 75
           AG  +SP         SLL L  ++  +     + ++ C  + R+V LL+   EE+  + 
Sbjct: 2   AGGIVSPA--------SLLDLIADIVEIPLNTGMFKKDCADLTRRVCLLTHLLEEIRDST 53

Query: 76  --QVSFFSPPTVLCFEEMYIVLQRMKTLI-------EDCYNGSKMWLLMQIETAANNFHE 126
               +  S      + ++ + LQ  K L+        D  +G+   +  Q       F  
Sbjct: 54  PIDSAASSSSENDWWSDLVVGLQAAKRLLSTARFQARDSSDGAAKRISFQ-------FQC 106

Query: 127 LTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQ 186
           +T  L   L  +P     +S +V + V L + Q  +               +Q   +L+ 
Sbjct: 107 VTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRA--------------MQRYGSLNS 152

Query: 187 IKKEIVPDHSILKQMFESLGLRNSSACK--EEIESLEEEIQ-NQTDQKSKHFAAALIGLV 243
            K       S L +  E  G  N    K  E++ES+ E +   + ++K           +
Sbjct: 153 NKF-----SSALSEPMERDGFSNVIKIKAEEKLESVSETLHFGEEEEKQSSPPLRRSSSI 207

Query: 244 RYTKCVLFGASVQKSDSRLRRK----KSASDANVPADFRCPISLELMRNPVVVATGQTYD 299
                +   A   + D  + +     K +    +P DF CP+SLELM++PV+VATGQTY+
Sbjct: 208 SLAYYLSKDADTDRLDKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYE 267

Query: 300 RQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI--PFDYAASSEKVN 357
           R  I  WI+ G+ TCPKT Q L +  L  N  L++LI+ WC E  I  P  Y      +N
Sbjct: 268 RAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQPAGY------IN 321

Query: 358 GVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIA 417
           G   N   +   +     L+ +L +S+S E   +AV E+RSLSK  +D+R  IAEAGAI 
Sbjct: 322 GRTKNSGDMSVIRA----LVQRL-SSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIP 376

Query: 418 LLARHL-GPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWE 476
           +L   L   D A+     Q NA+T +LNLSI E NK  IM   GA+  +++VLR+G T E
Sbjct: 377 VLVNLLTSEDVAT-----QENAITCVLNLSIYENNKELIM-FAGAVTSIVQVLRAG-TME 429

Query: 477 AKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRET 536
           A+ NAAAT+FSLS    ++  +G  +  +  L+DL++ G    K+DA  A+ NL      
Sbjct: 430 ARENAAATLFSLSLADENKIIIG-GSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGN 488

Query: 537 VGRLVERGIVEIVAEAMD-----VLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR 591
            GR V  GIV  + + +       + +E++TIL  +       + +   NT+  L  +L+
Sbjct: 489 KGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQ 548

Query: 592 EGSDTSRESAAATLVTICRKGGSEMVAD---IAAVPGIERVIWELMESGTARARRKAAAL 648
                +RE+AAA L+++C++   +++      A VP     + +L ++GT R +RKA +L
Sbjct: 549 TDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVP-----LMDLSKNGTERGKRKAISL 603

Query: 649 LRILRR 654
           L +LR+
Sbjct: 604 LELLRK 609

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 183/681 (26%), Positives = 336/681 (49%), Gaps = 72/681 (10%)

Query: 22  SPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCL-SIIRKVKLLSLFFEELLANQVS-- 78
           S ++S + L++SL+ L+ ++ + K   F   +      +R+++ L + FEE+     +  
Sbjct: 21  SESISIVTLLDSLIQLAGDILTFKSKHFSTNKQSFRETLRRIQNLLVVFEEIRIRIRNSR 80

Query: 79  --FFSPPTVLCFEEMYIVLQRMKTLIEDC-YNGSKMWLLMQIETAANNFHELTIDLSTLL 135
             F         +E+++  Q++K L+EDC  +G+++ ++M  +  +++   LT  +ST L
Sbjct: 81  RYFHDSAAASSLKEIHVGFQKLKFLLEDCTRDGARLCMMMNSDQVSDHLRVLTRSISTSL 140

Query: 136 DIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDH 195
              P+  + L+ +V +++ L+ +Q   R  G   ++ D +    +   L      +VPD 
Sbjct: 141 SAFPVASVDLTTEVNELIDLVVRQA--RKYGVQPETNDKRAVSSINRILALFVNRVVPDP 198

Query: 196 SILKQMFESLGLRNSSACKEEIESLEEEIQ-NQTDQKSK------HFAAALIGLVRYTKC 248
             + ++ + +G+R    C +EI  L EEI   + D+K K         ++L+G + Y +C
Sbjct: 199 DEINRILDHVGIRKWGDCVKEINFLGEEIDAERLDEKKKKSSDQVELLSSLMGFICYCRC 258

Query: 249 VLFGASVQKSDSRLRRKKS-ASDANV-----PADFRCPISLELMRNPVVVATGQTYDRQS 302
           ++ G  +++ D     +     D ++       D  CPISLE+M +PVV+ TG TYDR S
Sbjct: 259 IILG-RIERDDHHNHHEDGIKKDHDLIRGLKVEDLLCPISLEIMTDPVVIETGHTYDRSS 317

Query: 303 ISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTN 362
           I+ W  SG+ TCP TG+ L  T LV N +++ +I   C+   I     +   K +  V  
Sbjct: 318 ITKWFGSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTNGIVLAGISRRRKSHDDVVP 377

Query: 363 K--AALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA 420
           +  AA  A K+ A FL ++L      E    AV E+R  +KT S +R+C+ +AGA+  L 
Sbjct: 378 ESLAAKGAGKLIAKFLTSELINGGE-EMIYRAVREIRVQTKTSSFNRSCLVKAGAVTPLL 436

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGN 480
           + L    +S    +Q NA+  ILNLS     K++I   EG L  ++E+L  GA  E +  
Sbjct: 437 KLL----SSVDIRIQENAMAGILNLSKHVTGKSKIA-GEG-LKILVEILNEGAKTETRLY 490

Query: 481 AAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDALVAILNLAGDRETVG 538
           +A+ +F LS V  + + +G     + GLM++VKG     S+KR AL+A++ L    +   
Sbjct: 491 SASALFYLSSVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHW 550

Query: 539 RLVERGIVEIVAEAM-----------DVL---------PEESVTILEAVVKRGGLTAIVA 578
           R++  G V I+ + +           D L         P+ ++     V++RGGL     
Sbjct: 551 RVLAAGAVPILLDLLRSGEISGGLTADCLATLAKLAEYPDGTI----GVIRRGGL----- 601

Query: 579 AYNTIKKLCILLREGSDTS----RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM 634
                 KL + +   S+ S    ++     ++ +C  GG ++V  +     +   ++ ++
Sbjct: 602 ------KLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVL 655

Query: 635 ESGTARARRKAAALLRILRRW 655
            +G     +KA+AL+R++  +
Sbjct: 656 SNGEYGGSKKASALIRMIHEF 676

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	683
224087845	679	predicted protein [Populus trichocarpa]	0.992	0.998	0.676	0.0
224139334	654	predicted protein [Populus trichocarpa]	0.953	0.995	0.684	0.0
147803361	677	hypothetical protein VITISV_006741 [Viti	0.986	0.995	0.679	0.0
225439655	677	PREDICTED: U-box domain-containing prote	0.986	0.995	0.679	0.0
449522482	689	PREDICTED: U-box domain-containing prote	0.947	0.939	0.646	0.0
449466526	689	PREDICTED: U-box domain-containing prote	0.947	0.939	0.645	0.0
297735560	648	unnamed protein product [Vitis vinifera]	0.906	0.955	0.648	0.0
356495119	702	PREDICTED: U-box domain-containing prote	0.960	0.934	0.605	0.0
15241068	674	U-box domain-containing protein 16 [Arab	0.964	0.977	0.598	0.0
297810217	669	armadillo/beta-catenin repeat family pro	0.963	0.983	0.593	0.0

>gi|224087845|ref|XP_002308247.1| predicted protein [Populus trichocarpa] gi|222854223|gb|EEE91770.1| predicted protein [Populus trichocarpa]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/684 (67%), Positives = 568/684 (83%), Gaps = 6/684 (0%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MAVSPQ+FPPRKRRPSAGAFI P  SD +L+++LL LSQE+SS+KPLQFLL+R+  SI+R
Sbjct: 1   MAVSPQVFPPRKRRPSAGAFIPPKFSDQRLLQTLLELSQEISSLKPLQFLLKRNSSSILR 60

Query: 61  KVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETA 120
           K K+LS+ FEELL N + F SP T+LCFEEMY+VLQR KTL+EDC NGS+MWLLMQ ++ 
Sbjct: 61  KTKILSILFEELLKNPILFLSP-TLLCFEEMYLVLQRFKTLLEDCVNGSRMWLLMQSDSV 119

Query: 121 ANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV 180
           ANNF ELT++L+TLLDI P++E+ +S++VE++ +L++KQCSK      VD +D  LR  V
Sbjct: 120 ANNFLELTVELATLLDIFPVKEVEISEEVEELFLLLRKQCSK--AKTFVDKRDYNLRQDV 177

Query: 181 LTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALI 240
           LT LD+I+KEIVPDHS L ++F  LG RNS +CKEEIE+LE+E+QNQ D+KSK    ALI
Sbjct: 178 LTMLDRIQKEIVPDHSKLAEIFYLLGFRNSLSCKEEIENLEDEVQNQKDEKSKSDLIALI 237

Query: 241 GLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDR 300
           GLVRY KCVLF  S   +DSR   KK ASD NVP DFRCPISL+LMR+PVVVATGQTYDR
Sbjct: 238 GLVRYVKCVLFEPSTPGADSR--SKKLASDVNVPVDFRCPISLDLMRDPVVVATGQTYDR 295

Query: 301 QSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVV 360
           +SI+LWIESGH+TCPKTGQ L +TNL+ N ALKNLIA+WCREQ+IPF+ A  + +++ V+
Sbjct: 296 ESINLWIESGHSTCPKTGQALVNTNLIPNRALKNLIAMWCREQKIPFETAEGNNRIDRVI 355

Query: 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA 420
            +KAALEA KMT SFL+NK++ SQSMEA N  +YELR+L+K++SDSRACIAEAGAI +LA
Sbjct: 356 KSKAALEANKMTVSFLVNKMSASQSMEAVNGVIYELRALAKSNSDSRACIAEAGAIPVLA 415

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGN 480
           R+LGPD  S  PNLQVNAVT +LNLSILEANKT+I+E   ALNGVIEVLR+GATWEAKGN
Sbjct: 416 RYLGPDIGSEFPNLQVNAVTAMLNLSILEANKTKIIENGRALNGVIEVLRTGATWEAKGN 475

Query: 481 AAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRL 540
           AAATIFSLSGVH++RK LGRKTRVVKGL+DL K GP SSKRDALVAILNLAGDRETVGRL
Sbjct: 476 AAATIFSLSGVHSYRKRLGRKTRVVKGLVDLAKSGPASSKRDALVAILNLAGDRETVGRL 535

Query: 541 VERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRES 600
           V+ G+V++V E ++ +PEE+  +LE VVKRGG+ A+ AAYN IKKL +L+REGSD  RES
Sbjct: 536 VKEGVVDMVNEVINEMPEEAAAVLEMVVKRGGIVAVAAAYNAIKKLGVLMREGSDIVRES 595

Query: 601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLD 660
           AAATLVTICRKGG++ +A++A++ GIER+IWEL+ SGT RARRKA+ LLRILRRWAAGLD
Sbjct: 596 AAATLVTICRKGGADTIAELASIMGIERIIWELLASGTMRARRKASTLLRILRRWAAGLD 655

Query: 661 AR-SSSTTTVTTTAMTNSRIVLPS 683
                  +TV T +  +S +VLP+
Sbjct: 656 VEFFYGHSTVATVSSASSTVVLPA 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139334|ref|XP_002323061.1| predicted protein [Populus trichocarpa] gi|222867691|gb|EEF04822.1| predicted protein [Populus trichocarpa]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/656 (68%), Positives = 547/656 (83%), Gaps = 5/656 (0%)

Query: 3   VSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKV 62
           + PQ+FPPRKRRPSAGAFI P  SD +L++SL +LSQE+SS+KPLQFLL+R+ LSIIRK 
Sbjct: 4   IPPQVFPPRKRRPSAGAFIPPKFSDQRLLQSLFLLSQEISSLKPLQFLLKRNSLSIIRKA 63

Query: 63  KLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAAN 122
           K+L++ FEELL   +   SP T+LCFEEMY+VLQR+KTL+EDC NGSKMWLLMQ ++ AN
Sbjct: 64  KILAILFEELLKKPILVLSP-TLLCFEEMYLVLQRIKTLLEDCVNGSKMWLLMQSDSVAN 122

Query: 123 NFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLT 182
           NFHELT++L+TLLDI  ++E+ +S+DVE++ +L++KQCS+      VD +D  LRL VLT
Sbjct: 123 NFHELTVELATLLDIFSVKEVEVSEDVEELFLLLRKQCSQAK--VFVDKRDSSLRLDVLT 180

Query: 183 TLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGL 242
            LD+I+KEIVPD+S L ++F+ LGL NS +CKEEIE+LE+E+QNQ D+K+K    ALIGL
Sbjct: 181 MLDRIQKEIVPDNSKLAEIFDFLGLPNSLSCKEEIENLEDEVQNQKDEKAKSDMIALIGL 240

Query: 243 VRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQS 302
           VRY KCVLF      SDS+   KK ASDAN+PADFRCPISL+LMR+PVV+ATGQTYDR+S
Sbjct: 241 VRYAKCVLFEPLTPGSDSK--TKKLASDANIPADFRCPISLDLMRDPVVMATGQTYDRES 298

Query: 303 ISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTN 362
           I+LWIESGHNTCPKTGQ L HT+L+ N ALKNLIA+WCRE +IPF+ A  + + NGV+ N
Sbjct: 299 IALWIESGHNTCPKTGQALVHTSLIPNQALKNLIAMWCRELKIPFETAGDNNRTNGVIKN 358

Query: 363 KAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARH 422
           KAALEATKMTASFL+NK++ SQSMEA N  +YELR+L+K++SDSRACIAEAGAI +LAR+
Sbjct: 359 KAALEATKMTASFLVNKMSASQSMEAVNGVIYELRTLAKSNSDSRACIAEAGAIPVLARY 418

Query: 423 LGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAA 482
           LG D      NLQVNAVT +LNLSILEANKT+IME   ALNGVIEVLR+GATWEAKGNAA
Sbjct: 419 LGSDVGVGSLNLQVNAVTAMLNLSILEANKTKIMENGKALNGVIEVLRTGATWEAKGNAA 478

Query: 483 ATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE 542
           ATIFSLS VH+HRK LGRKTRV+KGLMDL K GP   KRDALVAILNLAGDRE   RLVE
Sbjct: 479 ATIFSLSCVHSHRKLLGRKTRVIKGLMDLAKSGPPGPKRDALVAILNLAGDREAARRLVE 538

Query: 543 RGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAA 602
            G+V++V E ++VLP E+  ILE VVKRGG+ A+ AA+NTIKKL  L+REGS+T+RESA 
Sbjct: 539 EGVVDVVKEMINVLPVEAAAILEMVVKRGGIMAVAAAHNTIKKLGTLMREGSETARESAV 598

Query: 603 ATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAG 658
           ATLVTICRKGG+EMVA++A + GIER+IWELM SGT RARRKA++LLR ++RWAAG
Sbjct: 599 ATLVTICRKGGAEMVAELATITGIERIIWELMGSGTMRARRKASSLLRTVKRWAAG 654

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147803361|emb|CAN71048.1| hypothetical protein VITISV_006741 [Vitis vinifera]

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/686 (67%), Positives = 551/686 (80%), Gaps = 12/686 (1%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MA+SPQ FP RKRRPSAG+FISPTLSD +LV+SLL++SQE+SS+ PLQFLL+R+ +SIIR
Sbjct: 1   MAISPQNFP-RKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIR 59

Query: 61  KVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETA 120
           K  LL+  FEELL N VS F+P  +LCFEEMYIVLQRMKTLIEDC NGS+ WLLMQ E+ 
Sbjct: 60  KSNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESV 119

Query: 121 ANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV 180
           +N FHELT+DLSTLLDI+P++ L L +D+E++V+LI+KQCS+    A VD  D+ LR  +
Sbjct: 120 SNGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSE--TAAYVDPTDETLRRDL 177

Query: 181 LTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALI 240
           L  LDQIK+EIVPDH  L ++FE L L++S++C +EI+SLEEE QNQ D KSK    ALI
Sbjct: 178 LKMLDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALI 237

Query: 241 GLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDR 300
           GLVRY KCVLFGAS  KS  R  R+KS +D  +PADFRCPI+L+LMR+PVVVATGQTYDR
Sbjct: 238 GLVRYAKCVLFGASTPKSHGR--RQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDR 295

Query: 301 QSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVV 360
            SI+ WIESGHN CPKTGQ LAHTNL+ N AL+NLI LWCREQ IPF     ++KV    
Sbjct: 296 TSINRWIESGHNXCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAAT 355

Query: 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA 420
            NK    ATKMT  FLINKL  S+S+EA N  V+ELR L+KTDS+SRACIAEAGAI LL 
Sbjct: 356 QNKTLFGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLV 415

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGN 480
           R LG D     P+LQVNAVTT+LNLSILEANKTRIME +GALNGVIEVLRSGATWEAKGN
Sbjct: 416 RFLGSDN----PSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGN 471

Query: 481 AAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRL 540
           AAATIFSL+GV ++RK LG+KTRV+KGLMDL KGGP SS+RDALVAIL+LAG+R+TVGRL
Sbjct: 472 AAATIFSLAGVQSYRKRLGKKTRVIKGLMDLAKGGPASSRRDALVAILSLAGERDTVGRL 531

Query: 541 VERGIVEIVAEAM---DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS 597
           +E G+VE+V E M       EE+VT+LE VV+RGGL A+ AAY+ IKKL ++LR GSD +
Sbjct: 532 IEGGVVEMVIEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRA 591

Query: 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657
           RESAAATLV ICRKGGSE VA +AA+PGIERVIWELM +GT R RRKAA+LLR+LRRWAA
Sbjct: 592 RESAAATLVNICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAA 651

Query: 658 GLDARSSSTTTVTTTAMTNSRIVLPS 683
           GLD    +TT  +TT  T SR VL S
Sbjct: 652 GLDEDVPTTTGHSTTVTTTSRPVLHS 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439655|ref|XP_002266747.1| PREDICTED: U-box domain-containing protein 16 [Vitis vinifera]

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/686 (67%), Positives = 551/686 (80%), Gaps = 12/686 (1%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MA+SPQ FP RKRRPSAG+FISPTLSD +LV+SLL++SQE+SS+ PLQFLL+R+ +SIIR
Sbjct: 1   MAISPQNFP-RKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIR 59

Query: 61  KVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETA 120
           K  LL+  FEELL N VS F+P  +LCFEEMYIVLQRMKTLIEDC NGS+ WLLMQ E+ 
Sbjct: 60  KSNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESV 119

Query: 121 ANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV 180
           +N FHELT+DLSTLLDI+P++ L L +D+E++V+LI+KQCS+    A VD  D+ LR  +
Sbjct: 120 SNGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSE--TAAYVDPTDETLRRDL 177

Query: 181 LTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALI 240
           L  LDQIK+EIVPDH  L ++FE L L++S++C +EI+SLEEE QNQ D KSK    ALI
Sbjct: 178 LKMLDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALI 237

Query: 241 GLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDR 300
           GLVRY KCVLFGAS  KS  R  R+KS +D  +PADFRCPI+L+LMR+PVVVATGQTYDR
Sbjct: 238 GLVRYAKCVLFGASTPKSHGR--RQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDR 295

Query: 301 QSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVV 360
            SI+ WIESGHN CPKTGQ LAHTNL+ N AL+NLI LWCREQ IPF     ++KV    
Sbjct: 296 TSINRWIESGHNMCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAAT 355

Query: 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA 420
            NK    ATKMT  FLINKL  S+S+EA N  V+ELR L+KTDS+SRACIAEAGAI LL 
Sbjct: 356 QNKTLFGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLV 415

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGN 480
           R LG D     P+LQVNAVTT+LNLSILEANKTRIME +GALNGVIEVLRSGATWEAKGN
Sbjct: 416 RFLGSDN----PSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGN 471

Query: 481 AAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRL 540
           AAATIFSL+GV ++RK LG+KTRV+KGLMDL KGGP SS+RDALVAIL+LAG+R+TVGRL
Sbjct: 472 AAATIFSLAGVQSYRKRLGKKTRVIKGLMDLAKGGPASSRRDALVAILSLAGERDTVGRL 531

Query: 541 VERGIVEIVAEAM---DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS 597
           +E G+VE+V E M       EE+VT+LE VV+RGGL A+ AAY+ IKKL ++LR GSD +
Sbjct: 532 IEGGVVEMVIEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRA 591

Query: 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657
           RESAAATLV ICRKGGSE VA +AA+PGIERVIWELM +GT R RRKAA+LLR+LRRWAA
Sbjct: 592 RESAAATLVNICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAA 651

Query: 658 GLDARSSSTTTVTTTAMTNSRIVLPS 683
           GLD    +TT  +TT  T SR VL S
Sbjct: 652 GLDEDVPTTTGHSTTVTTTSRPVLHS 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522482|ref|XP_004168255.1| PREDICTED: U-box domain-containing protein 16-like [Cucumis sativus]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/657 (64%), Positives = 522/657 (79%), Gaps = 10/657 (1%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MAVSP  FPPRKRRPSA AF+SP LS   L++SLL LSQE+SS KPL+FLL R  LS+IR
Sbjct: 1   MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLTRYSLSMIR 60

Query: 61  KVKLLSLFFEELLANQ-VSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIET 119
           K  LL +   +LL    V   SP   LC EEMYI+LQR+KTL+EDC NGSK+WLL Q ++
Sbjct: 61  KSLLLEIILHDLLRRHPVLSLSPSASLCLEEMYILLQRIKTLLEDCSNGSKIWLLTQNQS 120

Query: 120 AANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQ 179
            AN+FHELT+DLSTLLDI P+++  L+QDVE++  L++ Q S+ +    +D +D+ LR +
Sbjct: 121 IANSFHELTLDLSTLLDIFPVKDAALTQDVEELFYLLRNQTSESS--VFLDPRDEALRFR 178

Query: 180 VLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAAL 239
           VL  +D+IK EIVPD+S L ++F  + +R+SS+C+EEIE+LE+EIQNQTD+KS+    AL
Sbjct: 179 VLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIAL 238

Query: 240 IGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYD 299
           IGLVRY KCVL+GAS   ++   +RK S SD  VPADFRCPISL+LM++PVVVATG TYD
Sbjct: 239 IGLVRYAKCVLYGASTT-AEYGFQRKDSISDIAVPADFRCPISLDLMQDPVVVATGHTYD 297

Query: 300 RQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASS-EKVNG 358
           R +I+LWIESGHNTCPKTGQTLAHTNL+ N ALKNLIA+WCR++RIPFD   S+ ++VN 
Sbjct: 298 RAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESNKDRVND 357

Query: 359 VVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIAL 418
           V  NKAALEA +MTA+FL+NKLATS    + ND VYELR L+KTD  SR  IA AGA+ L
Sbjct: 358 VTLNKAALEAMRMTATFLVNKLATSVD-SSVNDVVYELRVLAKTDPGSRGYIALAGALPL 416

Query: 419 LARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAK 478
           L R+L  +     P LQVNAVTT+LNLSI E+NK+ IMETEGAL GVIEVLRSGATWEAK
Sbjct: 417 LVRYLNSEN----PILQVNAVTTVLNLSIFESNKSLIMETEGALIGVIEVLRSGATWEAK 472

Query: 479 GNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVG 538
           GNAAATIFSLS +H++R+ LGRKTRV++GL+DL K GP SSKRDALV IL LAGDRETVG
Sbjct: 473 GNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGDRETVG 532

Query: 539 RLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSR 598
           RL+E G++E V+  M+ LPEE+VTILE VV++GG  AI + +  IKKL ++LREGSD SR
Sbjct: 533 RLIEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRSR 592

Query: 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655
           ESAAA LVT+CR+GGSEMV ++A++ GIERVIWELM SGT R RRKAA+LLRILRRW
Sbjct: 593 ESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRW 649

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466526|ref|XP_004150977.1| PREDICTED: U-box domain-containing protein 16-like [Cucumis sativus]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/657 (64%), Positives = 521/657 (79%), Gaps = 10/657 (1%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MAVSP  FPPRKRRPSA AF+SP LS   L++SLL LSQE+SS KPL+FLL R  LS+IR
Sbjct: 1   MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLQSLLSLSQEISSTKPLKFLLNRYSLSMIR 60

Query: 61  KVKLLSLFFEELLANQ-VSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIET 119
           K  LL +   +LL    V   SP   LC EEMYI+LQR+KTL+EDC NGSK+WLL Q ++
Sbjct: 61  KSLLLEIILHDLLRRHPVLSLSPSASLCLEEMYILLQRIKTLLEDCSNGSKIWLLTQNQS 120

Query: 120 AANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQ 179
            AN+FHELT+DLSTLLDI P+++  L+QDVE++  L++ Q S+ +    +D +D+ LR +
Sbjct: 121 IANSFHELTLDLSTLLDIFPVKDAALTQDVEELFYLLRNQTSESS--VFLDPRDEALRFR 178

Query: 180 VLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAAL 239
           VL  +D+IK EIVPD+S L ++F  + +R+SS+C+EEIE+LE+EIQNQTD+KS+    AL
Sbjct: 179 VLKMIDRIKDEIVPDYSELLEIFTMIDIRDSSSCREEIENLEDEIQNQTDEKSRSDVIAL 238

Query: 240 IGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYD 299
           IGLVRY KCVL+GAS   ++   +RK S SD  VPADFRCPISL+LM++PVVVATG TYD
Sbjct: 239 IGLVRYAKCVLYGASTT-AEYGFQRKDSISDIAVPADFRCPISLDLMQDPVVVATGHTYD 297

Query: 300 RQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASS-EKVNG 358
           R +I+LWIESGHNTCPKTGQTLAHTNL+ N ALKNLIA+WCR++RIPFD   S+ ++VN 
Sbjct: 298 RAAITLWIESGHNTCPKTGQTLAHTNLIPNRALKNLIAMWCRQERIPFDITESNKDRVND 357

Query: 359 VVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIAL 418
           V  NKAALEA +MTA+FL+NKLATS    + ND VYELR L+KTD  SR  IA AGA+ L
Sbjct: 358 VTLNKAALEAMRMTATFLVNKLATSVD-SSVNDVVYELRVLAKTDPGSRGYIALAGALPL 416

Query: 419 LARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAK 478
           L R+L  +     P LQVNAVTT+LNLSI E+NK+ IMETEGAL GVIEVLRSGATWEAK
Sbjct: 417 LVRYLNSEN----PILQVNAVTTVLNLSIFESNKSLIMETEGALIGVIEVLRSGATWEAK 472

Query: 479 GNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVG 538
           GNAAATIFSLS +H++R+ LGRKTRV++GL+DL K GP SSKRDALV IL LAG RETVG
Sbjct: 473 GNAAATIFSLSSIHSYRRRLGRKTRVIRGLLDLAKDGPISSKRDALVTILTLAGVRETVG 532

Query: 539 RLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSR 598
           RL+E G++E V+  M+ LPEE+VTILE VV++GG  AI + +  IKKL ++LREGSD SR
Sbjct: 533 RLIEGGVMETVSYLMNSLPEEAVTILEVVVRKGGFVAIASGFYLIKKLGVVLREGSDRSR 592

Query: 599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW 655
           ESAAA LVT+CR+GGSEMV ++A++ GIERVIWELM SGT R RRKAA+LLRILRRW
Sbjct: 593 ESAAAALVTMCRQGGSEMVTELASMAGIERVIWELMGSGTMRGRRKAASLLRILRRW 649

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735560|emb|CBI18054.3| unnamed protein product [Vitis vinifera]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/663 (64%), Positives = 509/663 (76%), Gaps = 44/663 (6%)

Query: 1   MAVSPQIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIR 60
           MA+SPQ FP RKRRPSAG+FISPTLSD +LV+SLL++SQE+SS+ PLQFLL+R+ +SIIR
Sbjct: 1   MAISPQNFP-RKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIR 59

Query: 61  KVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETA 120
           K  LL+  FEELL N VS F+P  +LCFEEMYIVLQRMKTLIEDC NGS+ WLLMQ E+ 
Sbjct: 60  KSNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESV 119

Query: 121 ANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQV 180
           +N FHELT+DLSTLLDI+P++ L L +D+E++V+LI+KQCS+    A VD  D+ LR  +
Sbjct: 120 SNGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSE--TAAYVDPTDETLRRDL 177

Query: 181 LTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALI 240
           L  LDQIK+EIVPDH  L ++FE L L++S++C +EI+SLEEE QNQ D KSK    ALI
Sbjct: 178 LKMLDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALI 237

Query: 241 GLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDR 300
           GLVRY KCVLFGAS  KS  R  R+KS +D  +PADFRCPI+L+LMR+PVVVATGQTYDR
Sbjct: 238 GLVRYAKCVLFGASTPKSHGR--RQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDR 295

Query: 301 QSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVV 360
            SI+ WIESGHN CPKTGQ LAHTNL+ N AL+NLI LWCREQ IPF     ++KV    
Sbjct: 296 TSINRWIESGHNMCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAAT 355

Query: 361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA 420
            NK    ATKMT  FLINKL  S+S+EA N  V+ELR L+KTDS+SRACIAEAGAI LL 
Sbjct: 356 QNKTLFGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLV 415

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGN 480
           R LG D     P+LQVNAVTT+LNLSILEANKTRIME +GALNGVIEVLRSGATWEAKGN
Sbjct: 416 RFLGSDN----PSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGN 471

Query: 481 AAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRL 540
           AAATIFSL+GV ++RK LG+KTRV+KG                                L
Sbjct: 472 AAATIFSLAGVQSYRKRLGKKTRVIKG--------------------------------L 499

Query: 541 VERGIVEIVAEAM---DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS 597
           +E G+VE+V E M       EE+VT+LE VV+RGGL A+ AAY+ IKKL ++LR GSD +
Sbjct: 500 IEGGVVEMVIEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRA 559

Query: 598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA 657
           RESAAATLV ICRKGGSE VA +AA+PGIERVIWELM +GT R RRKAA+LLR+LRRWAA
Sbjct: 560 RESAAATLVNICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAA 619

Query: 658 GLD 660
           GLD
Sbjct: 620 GLD 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495119|ref|XP_003516428.1| PREDICTED: U-box domain-containing protein 16-like [Glycine max]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/676 (60%), Positives = 503/676 (74%), Gaps = 20/676 (2%)

Query: 1   MAVSPQIFPPRKRRP-SAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSII 59
           MA+SP+ FP RKRRP +  +F+SP ++DL ++ SLL L+ ++ S+     LL R   S I
Sbjct: 1   MAISPETFPTRKRRPENMASFMSPKINDLNVLCSLLQLTDQICSLNLTTTLLNRVSSSTI 60

Query: 60  RKVKLLSLFFEELL-ANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIE 118
           RK +LL + FEEL+  + ++  S    LC EEMYIVL  +K LIED  NGSK  LLMQIE
Sbjct: 61  RKTQLLGVVFEELVRVSNLNSNSSVLFLCLEEMYIVLHNIKILIEDFSNGSKFNLLMQIE 120

Query: 119 TAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRL 178
           T A+NFH LT +LSTLLD++PLQEL L+ DV ++ +L++KQ S+    A + ++   LR 
Sbjct: 121 TVADNFHRLTGELSTLLDVLPLQELDLNDDVRELALLVRKQGSE--AKAFIGAEQISLRN 178

Query: 179 QVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAA 238
            V+  LD+IK EIVPD + L  +FE L +R++S+C+ EIESLEEEI N+++++ K    A
Sbjct: 179 DVVFVLDRIKNEIVPDQAHLASIFEKLEIRDASSCRAEIESLEEEIHNRSEEQPKTDLVA 238

Query: 239 LIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTY 298
           LIGLVR+ KCVL+GAS     +   R+  + +  +PAD+RCPISLELMR+PVVVATGQTY
Sbjct: 239 LIGLVRFAKCVLYGASTPSQKTVTMRRNQSLELTIPADYRCPISLELMRDPVVVATGQTY 298

Query: 299 DRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNG 358
           DR SI LW++SGHNTCPKTGQTL+HT L+ N  L+N+IA WCREQRIPF     + K N 
Sbjct: 299 DRASIKLWMDSGHNTCPKTGQTLSHTELIPNRVLRNMIAAWCREQRIPFKVETVTGKHNS 358

Query: 359 VVTNKAALEATKMTASFLINKLATSQ-------------SMEAANDAVYELRSLSKTDSD 405
            VTNKAALEAT+M  SFL+NKL  +              S+E AN  VYELR L+KTDS 
Sbjct: 359 GVTNKAALEATRMMVSFLVNKLKGNGHGKEDNDNVNVPLSVEDANGVVYELRVLAKTDSG 418

Query: 406 SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGV 465
           SRACIAEAGAI LL R L    A   P+LQVNAVTTILNLSILEANKT+IMET+GALNGV
Sbjct: 419 SRACIAEAGAIPLLVRFL---NAEENPSLQVNAVTTILNLSILEANKTKIMETDGALNGV 475

Query: 466 IEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV 525
            EVL SGATWEAK NAAAT+FSLSGV AHR+ LGRKTRVV GL+ L K GP  ++RDAL 
Sbjct: 476 AEVLISGATWEAKANAAATVFSLSGVAAHRRRLGRKTRVVSGLVGLAKTGPEGARRDALA 535

Query: 526 AILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKK 585
           A+LNLA DRETV RLVE G+V + AE M  +PEE VTILEAVVKRGGL A+ AAY  IK+
Sbjct: 536 AVLNLAADRETVARLVEGGVVGMAAEVMAAMPEEGVTILEAVVKRGGLVAVAAAYAGIKR 595

Query: 586 LCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA 645
           L  +LREGS+ +RESAAATLVT+CRKGGSE+VA++AAVPG+ERVIWELM  G+ R RRKA
Sbjct: 596 LGAVLREGSERARESAAATLVTMCRKGGSEVVAELAAVPGVERVIWELMAVGSVRGRRKA 655

Query: 646 AALLRILRRWAAGLDA 661
           A LLRI+RRWAAG+D 
Sbjct: 656 ATLLRIMRRWAAGIDG 671

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241068|ref|NP_195803.1| U-box domain-containing protein 16 [Arabidopsis thaliana] gi|75264490|sp|Q9LZW3.1|PUB16_ARATH RecName: Full=U-box domain-containing protein 16; AltName: Full=Plant U-box protein 16 gi|7329656|emb|CAB82753.1| putative protein [Arabidopsis thaliana] gi|51536504|gb|AAU05490.1| At5g01830 [Arabidopsis thaliana] gi|52421307|gb|AAU45223.1| At5g01830 [Arabidopsis thaliana] gi|110738668|dbj|BAF01259.1| hypothetical protein [Arabidopsis thaliana] gi|332003015|gb|AED90398.1| U-box domain-containing protein 16 [Arabidopsis thaliana]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/678 (59%), Positives = 512/678 (75%), Gaps = 19/678 (2%)

Query: 9   PPRKRRP-SAGAFISPTLS-DLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLS 66
           P RKRRP   G+F SP LS D KL  SL + S E+SSM+PL F+L+R+ LS+IRKVK+L+
Sbjct: 10  PARKRRPLVVGSFESPKLSSDTKLTRSLFLASHEISSMQPLPFILRRNSLSLIRKVKILA 69

Query: 67  LFFEELLA--NQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124
             F+ELL   +Q+  +S    LCFEEM IV+QR+K+LI+DC   SK+WLL+QI+  A NF
Sbjct: 70  SVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRVSKLWLLLQIDIVAFNF 129

Query: 125 HELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTL 184
           HEL  DLST+LDI+PL +  LS D +D++ L+ KQCS   +   VD++D  LR +V  T+
Sbjct: 130 HELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQ--FVDARDVALRRKVTDTI 187

Query: 185 DQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVR 244
             IK +I PDHS L ++F  LGL +S++  +EI+ LE+EIQ+Q D +SK  AA+LIGLVR
Sbjct: 188 AGIKHQISPDHSTLIKIFNDLGLSDSASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVR 247

Query: 245 YTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSIS 304
           Y+KCVL+G S    D   RR +S SDAN+PADFRCPI+LELMR+PVVVATGQTYDR+SI 
Sbjct: 248 YSKCVLYGPSTPAPD--FRRHQSLSDANIPADFRCPITLELMRDPVVVATGQTYDRESID 305

Query: 305 LWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKA 364
           LWI+SGHNTCPKTGQ L HT+LV N ALKNLI LWCR+Q+IPF+              K 
Sbjct: 306 LWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGG--GEPAPCKE 363

Query: 365 ALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG 424
           A+E TKM  SFLI KL+ + S    N  V+ELR+L+K+D+ +RACIAEAGAI  L R+L 
Sbjct: 364 AVEFTKMMVSFLIEKLSVADS----NGVVFELRALAKSDTVARACIAEAGAIPKLVRYL- 418

Query: 425 PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT 484
              A+  P+LQ+NAVTTILNLSILE NKTRIMET+GALNGVIEVLRSGATWEAK NAAAT
Sbjct: 419 ---ATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAAT 475

Query: 485 IFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG 544
           +FSL+GV A+R+ LGRK RVV GL+DL K GPTSSKRDALVAILNL  +RE VGR VE G
Sbjct: 476 LFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAG 535

Query: 545 IVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAAT 604
           ++    +A   LPEE+V ++EAVV+RGGL A+ AA++ I+ L  ++REG+DT+RESAAAT
Sbjct: 536 VMGAAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADTTRESAAAT 595

Query: 605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLDARSS 664
           LVT+CRKGGSE+VA++AA+PGIERVIWE++ +GTAR  RKAA+L+R LRRWAAG D  ++
Sbjct: 596 LVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLMRYLRRWAAG-DTHNT 654

Query: 665 STTTVTTTAMTNSRIVLP 682
           +  T +    T SRI  P
Sbjct: 655 AAETQSIVVPTPSRIFSP 672

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810217|ref|XP_002872992.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297318829|gb|EFH49251.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/676 (59%), Positives = 509/676 (75%), Gaps = 18/676 (2%)

Query: 8   FPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSL 67
           FP RKRRP      SP LSD KL  SL + S E++SM+PL+F+L+ + LS+IRKVK+L+ 
Sbjct: 9   FPARKRRPLV--VDSPKLSDAKLTRSLFLASHEIASMQPLRFILRPNSLSLIRKVKILAS 66

Query: 68  FFEELLA-NQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHE 126
            F+ELL  +Q+  +S    LCFEEM IV+QR+K+LI+DC   SK+WLL+QI+  A NFHE
Sbjct: 67  VFDELLLRSQLLVYSQSAQLCFEEMQIVMQRIKSLIDDCSRVSKLWLLLQIDIVAFNFHE 126

Query: 127 LTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQ 186
           L  DLST+LDI+P+ E  LS D +D++ L++KQCS   +   VD++D  LR +V  T+  
Sbjct: 127 LLTDLSTVLDILPVHEFDLSNDAQDLISLLRKQCSDSVQ--FVDARDHALRRKVTDTIAG 184

Query: 187 IKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLVRYT 246
           IK +I PDHS L ++F  LG  +S++  +EI+ LE+EIQ+Q D +SK  AA+LIGLVRY+
Sbjct: 185 IKHQISPDHSSLIEIFNDLGFTDSASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVRYS 244

Query: 247 KCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLW 306
           KCVL+G S    D   RR +S SDAN+PADFRCPI+LELMR+PVVV+TGQTYDR+SI LW
Sbjct: 245 KCVLYGPSTPAPD--FRRHQSLSDANIPADFRCPITLELMRDPVVVSTGQTYDRESIDLW 302

Query: 307 IESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAAL 366
           I+SGHNTCPKTGQ L HT+L+ N ALKNLI LWCR+Q+IPF+              K A+
Sbjct: 303 IQSGHNTCPKTGQVLKHTSLIPNRALKNLIVLWCRDQKIPFELYGDGG--GEPAPCKEAV 360

Query: 367 EATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD 426
           E TKM  SFLI KL+ + S    N  V+ELR+L+K+D+ +RACIAEAGAI  L R L   
Sbjct: 361 EFTKMIVSFLIEKLSLADS----NGVVFELRALAKSDTVARACIAEAGAIPKLVRFL--- 413

Query: 427 TASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF 486
            A+  P+LQ+NAVTTILNLSILE NKTRIMET+GALNGVIEVLRSGATWEAK NAAAT+F
Sbjct: 414 -ATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAATLF 472

Query: 487 SLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV 546
           SL+GV A+R+ LGRK RVV GL+DL K GPTSSKRDALVAILNL  +RE VGR VE G++
Sbjct: 473 SLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAGVM 532

Query: 547 EIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV 606
           E   +A   LPEE+V ++EAVV+RGGL A+ AA++ I+ L  ++REG+DT+RESAAATLV
Sbjct: 533 EAAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADTTRESAAATLV 592

Query: 607 TICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLDARSSST 666
           T+CRKGGSE+VA++AA+PGIERVIWE++ +GTAR  RKAA+L+R LRRWAAG D   ++ 
Sbjct: 593 TMCRKGGSELVAEMAAIPGIERVIWEMIGAGTARGGRKAASLMRYLRRWAAG-DTHDTAA 651

Query: 667 TTVTTTAMTNSRIVLP 682
            T +    T SRI  P
Sbjct: 652 ETQSIVVPTPSRIFSP 667

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	683
TAIR|locus:2181077	674	SAUR21 "SMALL AUXIN UP RNA 21"	0.901	0.913	0.596	3e-188
UNIPROTKB|Q6EUK7	728	PUB4 "U-box domain-containing	0.909	0.853	0.356	2.6e-94
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.800	0.750	0.363	1.1e-87
TAIR|locus:2195563	686	PUB19 "plant U-box 19" [Arabid	0.881	0.877	0.315	1e-68
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.859	0.928	0.323	1e-68
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.863	0.893	0.309	1.4e-64
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.836	0.934	0.304	1.9e-58
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.513	0.573	0.376	2.3e-56
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.850	0.880	0.275	8.6e-56
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.528	0.574	0.372	6.9e-55

TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
 Identities = 378/634 (59%), Positives = 475/634 (74%)

Query:     9 PPRKRRPSA-GAFISPTLS-DLKLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLS 66
             P RKRRP   G+F SP LS D KL  SL + S E+SSM+PL F+L+R+ LS+IRKVK+L+
Sbjct:    10 PARKRRPLVVGSFESPKLSSDTKLTRSLFLASHEISSMQPLPFILRRNSLSLIRKVKILA 69

Query:    67 LFFEELLA--NQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124
               F+ELL   +Q+  +S    LCFEEM IV+QR+K+LI+DC   SK+WLL+QI+  A NF
Sbjct:    70 SVFDELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKSLIDDCSRVSKLWLLLQIDIVAFNF 129

Query:   125 HELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTL 184
             HEL  DLST+LDI+PL +  LS D +D++ L+ KQCS   +   VD++D  LR +V  T+
Sbjct:   130 HELVTDLSTVLDILPLHDFDLSDDAQDLISLLTKQCSDSVQ--FVDARDVALRRKVTDTI 187

Query:   185 DQIKKEIVPDHSILKQMFESLGLRNSSACKXXXXXXXXXXQNQTDQKSKHFAAALIGLVR 244
               IK +I PDHS L ++F  LGL +S++            Q+Q D +SK  AA+LIGLVR
Sbjct:   188 AGIKHQISPDHSTLIKIFNDLGLSDSASLTDEIQRLEDEIQDQIDDRSKSAAASLIGLVR 247

Query:   245 YTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSIS 304
             Y+KCVL+G S    D   RR +S SDAN+PADFRCPI+LELMR+PVVVATGQTYDR+SI 
Sbjct:   248 YSKCVLYGPSTPAPD--FRRHQSLSDANIPADFRCPITLELMRDPVVVATGQTYDRESID 305

Query:   305 LWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKA 364
             LWI+SGHNTCPKTGQ L HT+LV N ALKNLI LWCR+Q+IPF+              K 
Sbjct:   306 LWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGG--GEPAPCKE 363

Query:   365 ALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG 424
             A+E TKM  SFLI KL+ + S    N  V+ELR+L+K+D+ +RACIAEAGAI  L R+L 
Sbjct:   364 AVEFTKMMVSFLIEKLSVADS----NGVVFELRALAKSDTVARACIAEAGAIPKLVRYL- 418

Query:   425 PDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT 484
                A+  P+LQ+NAVTTILNLSILE NKTRIMET+GALNGVIEVLRSGATWEAK NAAAT
Sbjct:   419 ---ATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAAT 475

Query:   485 IFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG 544
             +FSL+GV A+R+ LGRK RVV GL+DL K GPTSSKRDALVAILNL  +RE VGR VE G
Sbjct:   476 LFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAG 535

Query:   545 IVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAAT 604
             ++    +A   LPEE+V ++EAVV+RGGL A+ AA++ I+ L  ++REG+DT+RESAAAT
Sbjct:   536 VMGAAGDAFQELPEEAVAVVEAVVRRGGLMAVSAAFSLIRLLGEVMREGADTTRESAAAT 595

Query:   605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638
             LVT+CRKGGSE+VA++AA+PGIERVIWE++ +GT
Sbjct:   596 LVTMCRKGGSELVAEMAAIPGIERVIWEMIGAGT 629

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

UNIPROTKB|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 919 (328.6 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
 Identities = 233/653 (35%), Positives = 364/653 (55%)

Query:    10 PRKRR-PSAGAFISPT-LSDLKLVESLLILSQE-VSSMKPLQFLLQRSCLSIIRKVKLLS 66
             PR+RR P AGAF +PT L+   L+ ++  L+   V+  +P     +R+  ++ R++ LLS
Sbjct:    20 PRRRRLPLAGAFFAPTGLAGATLLRAVASLAASLVAGARPPS--QRRNVDALARRLALLS 77

Query:    67 LFFEELLANQVSF--FSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124
                E +L +  +   FS    LCF E+Y+VL R + L+    +  + W L++    A +F
Sbjct:    78 AILESILLDTAAAGAFSDAANLCFRELYVVLFRAELLVSYVASAGRAWALLRSPHLAASF 137

Query:   125 HELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTL 184
              +L  +L+ +LD++P   LRLS D   ++ L++  C  R      D  +  LR +++  L
Sbjct:   138 RDLDAELAVVLDVLPAASLRLSHDATGLLDLLRAHCRCRAPAQYHDPDEAALRERLMDAL 197

Query:   185 DQIKKEIVPDHSILKQMFESLGLRNSSACKXXXXXXXXXXQNQTDQKSKHFAAALIGLVR 244
              Q      PDH  L+ +   +G+  +++C+           +Q +        +++ L+R
Sbjct:   198 RQFDLGQPPDHPSLQSLLADMGISTAASCRAEIDYLEEQILSQEEDTDLPLVGSVLALLR 257

Query:   245 YTKCVLFGASVQKS--DSRL--RRKKSAS-----DAN--VPADFRCPISLELMRNPVVVA 293
             Y    +F  S  K+  D  L   R++  S     D +  VP +F CPISL+LMR+PVV +
Sbjct:   258 YCLFAVFDPSNAKALRDWPLSGNRQRLLSIGGGDDTSFSVPKEFSCPISLDLMRDPVVAS 317

Query:   294 TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASS 353
             TGQTYDR SI  WIE GH+TCP +GQTLA   LV N AL++LI+ WC    + +D   S+
Sbjct:   318 TGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRALRSLISQWCGVYGLQYDSPESN 377

Query:   354 EKVNGVV----TNKAALEATKMTASFLINKLAT-SQSMEAANDAVYELRSLSKTDSDSRA 408
             E +   V    +++AA+EA K TA  L+  L   S++++A   A  E+R L+KT   +RA
Sbjct:   378 EGMAECVAASCSSRAAMEANKATARILVRMLEDGSENVKAV--AAKEIRLLAKTGKQNRA 435

Query:   409 CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEV 468
              IA+ GAI LL R L     S     Q NAVT +LNLSI E NK RIME EG L  ++ V
Sbjct:   436 FIADLGAIPLLCRLL----LSNDWMAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGV 491

Query:   469 LRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528
             L++G T EAK NAAAT+FSLS VH  +K +  +   V+ L  ++  G +  K+DA++A+ 
Sbjct:   492 LQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPGAVEELASMLTKGTSRGKKDAVMALF 551

Query:   529 NLAGDRETVGRLVERGIVEIVAEAM--DVLPEESVTILEAVVKRGGLTAIVAAYNT-IKK 585
             NL+   E+  R++E   V  + +++  D + EE+   L  ++K+  +  +V +  T I  
Sbjct:   552 NLSTHPESSARMLESCAVVALIQSLRNDTVSEEAAGALALLMKQPSIVHLVGSSETVITS 611

Query:   586 LCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638
             L  L+R G+   +E+A + L  ICR+GGS +V  +A +PG+  VI  +  +GT
Sbjct:   612 LVGLMRRGTPKGKENAVSALYEICRRGGSALVQRVAKIPGLNTVIQTITLNGT 664

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 209/575 (36%), Positives = 322/575 (56%)

Query:    85 VLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELR 144
             +LC +E+Y++L R K L++ C   SK+WLL+Q  + +  FH+L  ++STLLD++P+ +L 
Sbjct:   104 LLCLKELYLLLYRSKILVDYCAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLG 163

Query:   145 LSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMF-E 203
             LS D+ + + L+++Q S++ +   +D  D+ LR    + LD  +   +P    L+  F E
Sbjct:   164 LSDDIREQIELLQRQ-SRKAR-LYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVE 221

Query:   204 SLGLRNSSACKXXXXXXXXXXQNQTD--QKSKHFAAALIGLVRYTKCVLFGAS------- 254
              LG+R+S +C+           N     + +       + + RY + +LFG         
Sbjct:   222 KLGIRDSKSCRSEIEFLEEQIVNHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWW 281

Query:   255 VQKSDSRLRRKKSASDAN-----VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES 309
             ++ +  + R+   A +       VP DF CPISL+LM +PV+++TGQTYDR SI+ WIE 
Sbjct:   282 IENNPKKPRKGFVAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEE 341

Query:   310 GHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD--YAAS-SEKVNGVVTNKAAL 366
             GH TCPKTGQ L  + +V N ALKNLI  WC    I ++  +  S +E     +  KAA+
Sbjct:   342 GHCTCPKTGQMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAV 401

Query:   367 EATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD 426
             EA K T S LI  LA   S  A   A  E+R L+KT  ++RA IAEAGAI  L R L  +
Sbjct:   402 EANKATVSILIKYLADG-SQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSE 460

Query:   427 TASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF 486
              A      Q N+VT +LNLSI E NK+RIME    L  ++ VL SG T EA+ NAAAT+F
Sbjct:   461 NAIA----QENSVTAMLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLF 516

Query:   487 SLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV 546
             SLS VH ++K +    + V+ L  L++ G    K+DA+ A+ NL+   +   R++E G V
Sbjct:   517 SLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGV 576

Query:   547 EIVAEAM--DVLPEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILLREGSDTSRESAAA 603
               +  A+  + + EE+   L  +V++  G  AI    + +  L  ++R G+   +E+A A
Sbjct:   577 SSLVGALKNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVA 636

Query:   604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESGT 638
              L+ +CR GG+ +   +   P I  ++  L+ +GT
Sbjct:   637 ALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGT 671

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

TAIR|locus:2195563 PUB19 "plant U-box 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 201/637 (31%), Positives = 333/637 (52%)

Query:    24 TLSDLKLVESLLILSQEVSSMKPLQFLL-QRSCLSIIRKVKLLSLFFEELLANQVSFFSP 82
             ++S   LV+SLL L+ E+ S KP  F   +RS    +R V+ L +FFEEL   Q+   S 
Sbjct:    23 SISLTTLVDSLLQLAGEILSFKPKHFSTNKRSVKETLRHVQTLVIFFEELRI-QIRVGSI 81

Query:    83 PT----VLCFEEMYIVLQRMKTLIEDCY-NGSKMWLLMQIETAANNFHELTIDLSTLLDI 137
             P     +L   E++++ Q++K L++DC  +G+K+++LM     + +F +LT  +ST LD 
Sbjct:    82 PAGRSVILSLSELHVIFQKLKFLLDDCTRDGAKLYMLMNSGQVSAHFRDLTRSISTSLDT 141

Query:   138 MPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQ-VLTTLDQIKKEIVPDHS 196
              P++ + L  +V +++ L+ +Q  K    A  D +DDK  +  V    +  +  I P+  
Sbjct:   142 FPVRSVDLPGEVNELIYLVMRQTRKSE--ARPD-RDDKRAIDSVYWFFNLFENRINPNSD 198

Query:   197 ILKQMFESLGLRNSSAC-KXXXXXXXXXXQNQTDQKSKHFAAALIGLVRYTKCVLF-GAS 254
              + ++ + +G+R    C K            +         + L+G + Y +CV+  G  
Sbjct:   199 EILRVLDHIGVRKWRDCVKEIDFLREEISVGKKSNIEIELLSNLMGFICYCRCVILRGID 258

Query:   255 V--QKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHN 312
             V  ++ D            NV  D RCPISLE+M +PVV+ +G TYDR SI+ W  SG+ 
Sbjct:   259 VDDEEKDKEEDDLMMVRSLNVD-DLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNI 317

Query:   313 TCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMT 372
             TCPKTG+TL  T LV N ++K +I  + ++  +        +KV+ V  + AA EA K+T
Sbjct:   318 TCPKTGKTLVSTVLVDNFSVKQVIQSYSKQNGVVMGQKGK-KKVD-VAESLAAEEAGKLT 375

Query:   373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLP 432
             A FL  +L      E    A+ E+R L+KT +  R+C+ EAG +  L + L  D     P
Sbjct:   376 AEFLAGELIKGDEEEMVK-ALVEIRILTKTSTFYRSCLVEAGVVESLMKILRSDD----P 430

Query:   433 NLQVNAVTTILNLSILEANKTRIM-ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV 491
              +Q NA+  I+NLS   A KTRI+ E  G L  ++EVL  GA  E++  AAA +F LS +
Sbjct:   431 RIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLNDGARRESRQYAAAALFYLSSL 490

Query:   492 HAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDALVAILNLAGDR-ETVGRLVERGIVEI 548
               + + +G  +  + GL+ +VK      S+KR+AL+AI +L  ++ +   R++  GIV +
Sbjct:   491 GDYSRLIGEISDAIPGLVRIVKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAAGIVPV 550

Query:   549 VA------EAMDVLPEESVTILEAVVKR-GGLTAIVAAYNTIKKLCIL-LREGSDTSRES 600
             +       E  D +  +S+ IL  + +   G+ +++        + IL   E S  +++ 
Sbjct:   551 LLDLVKSEEISDGVTADSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSPATKQH 610

Query:   601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG 637
               A L+ +C  GGS++V  +A  P I   ++    +G
Sbjct:   611 CVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNG 647

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010029 "regulation of seed germination" evidence=IGI

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 200/619 (32%), Positives = 316/619 (51%)

Query:    29 KLVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCF 88
             +L+  L+   +E+S     +  + +    ++R++ LLS FFEEL+   V       +  F
Sbjct:    11 ELMSRLVDSVKEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVEL-KKDQITGF 69

Query:    89 EEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQD 148
             E M I L     L      GSK++ L   ++    F ++T+++   L  +P +++ +S++
Sbjct:    70 EAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEE 129

Query:   149 VEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR 208
             V + V L+  Q  KR K    +S      LQ+   L   +  + PD  ILK++ + L L 
Sbjct:   130 VREQVQLLHFQF-KRAKERWEESD-----LQLSHDLAMAENVMDPDPIILKRLSQELQLT 183

Query:   209 NSSACKXXXXXXXX---XXQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRK 265
                  K                 D   +  ++ L  LV +                + R 
Sbjct:   184 TIDELKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTMESSDPDPSTGSRIVSRH 243

Query:   266 KSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325
             +S     +P  FRCPISLELM++PV+V+TGQTY+R SI  W+++GH TCPK+ +TL H  
Sbjct:   244 RSPV---IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 300

Query:   326 LVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQS 385
             L  N  LK+LIALWC    I       S +   +  + ++ +  +     L+ KLA   +
Sbjct:   301 LTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSS-DCDRTFVLSLLEKLANGTT 359

Query:   386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILN 444
              E    A  ELR L+K + D+R CIAEAGAI LL   L  PD     P  Q ++VT +LN
Sbjct:   360 -EQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPD-----PRTQEHSVTALLN 413

Query:   445 LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRV 504
             LSI E NK  I++  GA+  ++EVL++G+  EA+ NAAAT+FSLS +  ++  +G     
Sbjct:   414 LSINEGNKGAIVDA-GAITDIVEVLKNGSM-EARENAAATLFSLSVIDENKVAIGA-AGA 470

Query:   505 VKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVE----IVAEAMDVLPEES 560
             ++ L+ L++ G    K+DA  AI NL   +    R V+ GIV+    ++ +A   + +E+
Sbjct:   471 IQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEA 530

Query:   561 VTILEAV-VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVAD 619
             + IL  +   + G TAI  A  +I  L  ++R GS  +RE+AAA L  +C  G  E + +
Sbjct:   531 LAILAILSTNQEGKTAIAEA-ESIPVLVEIIRTGSPRNRENAAAILWYLCI-GNIERL-N 587

Query:   620 IAAVPGIERVIWELMESGT 638
             +A   G +  + EL E+GT
Sbjct:   588 VAREVGADVALKELTENGT 606

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 192/621 (30%), Positives = 321/621 (51%)

Query:    32 ESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEM 91
             +SL+ +  E++++   +  +++ C ++ R++KLL   FEE+  +     S  T+     +
Sbjct:    10 QSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPI-SEDTLKTLMNL 68

Query:    92 YIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVED 151
                +   K  ++ C  GSK++L+M+ E   +   E+++ L   L  +P +EL +S +V +
Sbjct:    69 KEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVRE 128

Query:   152 VVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRN-S 210
              V L+  Q  +R KG  VD  DD+L  + L +L     ++     +L+++ + L L    
Sbjct:   129 QVELVLSQF-RRAKGR-VDVSDDEL-YEDLQSLCNKSSDVDAYQPVLERVAKKLHLMEIP 185

Query:   211 SACKXXXXXXXXXXQNQTD--QKSKHFAAALIGLVRYTKCVLFGASVQKS--DSRLRRKK 266
                +           +  D  +  +  A  L  +  + +        QK   +SR   + 
Sbjct:   186 DLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQT 245

Query:   267 SASDAN----VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA 322
             S + +     +P DFRCPISLE+MR+PV+V++GQTY+R  I  WIE GH+TCPKT Q L 
Sbjct:   246 STAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALT 305

Query:   323 HTNLVTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLAT 382
              T L  N  L++LIA WC    I      SS +   V +  +  EA K+    L+ +LA 
Sbjct:   306 STTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIED--LMWRLAY 363

Query:   383 SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTT 441
                 E    A  E+R L+K ++D+R  IAEAGAI LL   L  PD  SR+   Q ++VT 
Sbjct:   364 GNP-EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPD--SRI---QEHSVTA 417

Query:   442 ILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK 501
             +LNLSI E NK  I+   GA+ G+++VL+ G+  EA+ NAAAT+FSLS +  ++ T+G  
Sbjct:   418 LLNLSICENNKGAIVSA-GAIPGIVQVLKKGSM-EARENAAATLFSLSVIDENKVTIGA- 474

Query:   502 TRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV----EIVAEAMDVLP 557
                +  L+ L+  G    K+DA  A+ NL   +   G+ +  G++     ++ E    + 
Sbjct:   475 LGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMV 534

Query:   558 EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV 617
             +E++ IL  +       AI+ + + +  L   +R GS  +RE+AAA LV +C  G  + +
Sbjct:   535 DEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLC-SGDPQHL 593

Query:   618 ADIAAVPGIERVIWELMESGT 638
              +   + G+   + +L  +GT
Sbjct:   594 VEAQKL-GLMGPLIDLAGNGT 613

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 186/611 (30%), Positives = 305/611 (49%)

Query:    37 LSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQ 96
             ++ E++++   +  L+R C  + R+V+LL+   + L A+  S  S P       +   L 
Sbjct:     5 VADEIAALPEPRGPLRRPCADLSRRVRLLAPLLDHLPASSSSSSSTP-------LADALG 57

Query:    97 RMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLI 156
               + L+    +GSK+   M+ +   + F  +   +   LD +P     + Q+V++ V L+
Sbjct:    58 AARDLLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALV 117

Query:   157 KKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKXX 216
               Q  + +     D  D +L + +   L         D ++L ++   L L   +  K  
Sbjct:   118 HSQFQRAS--TRTDPPDTQLSMDLAWALTDNPS----DPALLTRISHKLQLHTMADMKNE 171

Query:   217 XXXXXXXXQNQTDQKSKHFAAALIGLVRYTK-CVLFGASVQKSDSRLRRKKSASDAN--V 273
                      + T  +       +  L++  K CV+       +D+   R  S    +  +
Sbjct:   172 SIALHNMVIS-TAGEPDGCVDQMSSLLKKLKDCVV--TEDHANDALTTRSASIKHRSPII 228

Query:   274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALK 333
             P +FRCPISLELM++PV+V++GQTY+R  I  W++SGH TCPKT Q L+HT+L  N  LK
Sbjct:   229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLK 288

Query:   334 NLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASF--LINKLATSQSMEAAND 391
             +LI+ WC    I         K N     KAA  +    A    L+N+L  S + +    
Sbjct:   289 SLISQWCEANGIELP----KNKQNSR-DKKAAKSSDYDHAGLVSLMNRLR-SGNQDEQRA 342

Query:   392 AVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN 451
             A  E+R L+K + ++R CIAEAGAI LL   L    +S  P  Q +AVT +LNLSI E N
Sbjct:   343 AAGEIRLLAKRNVNNRICIAEAGAIPLLVNLL----SSSDPRTQEHAVTALLNLSIHENN 398

Query:   452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDL 511
             K  I+++  A+  ++EVL++G+  E + NAAAT+FSLS V  ++ T+G     +  L++L
Sbjct:   399 KASIVDSH-AIPKIVEVLKTGSM-ETRENAAATLFSLSVVDENKVTIGA-AGAIPPLINL 455

Query:   512 VKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV----EIVAEAMDVLPEESVTILEAV 567
             +  G    K+DA  AI NL   +    R V+ GIV      + +    + +E++++L  +
Sbjct:   456 LCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSIL 515

Query:   568 VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIE 627
                     ++A    I  L  +++ GS  +RE+AAA L  +C     + +A  AA  G+E
Sbjct:   516 AGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAA--GVE 573

Query:   628 RVIWELMESGT 638
               + EL E+GT
Sbjct:   574 DALKELSETGT 584

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 144/382 (37%), Positives = 219/382 (57%)

Query:   266 KSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325
             K +    +P DF CP+SLELM++PV+VATGQTY+R  I  WI+ G+ TCPKT Q L +  
Sbjct:   234 KKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFT 293

Query:   326 LVTNTALKNLIALWCREQRI--PFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATS 383
             L  N  L++LI+ WC E  I  P  Y      +NG   N   +   +     L+ +L+ S
Sbjct:   294 LTPNYVLRSLISRWCAEHNIEQPAGY------INGRTKNSGDMSVIRA----LVQRLS-S 342

Query:   384 QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL-GPDTASRLPNLQVNAVTTI 442
             +S E   +AV E+RSLSK  +D+R  IAEAGAI +L   L   D A+     Q NA+T +
Sbjct:   343 RSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVAT-----QENAITCV 397

Query:   443 LNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKT 502
             LNLSI E NK  IM   GA+  +++VLR+G T EA+ NAAAT+FSLS    ++  +G  +
Sbjct:   398 LNLSIYENNKELIMFA-GAVTSIVQVLRAG-TMEARENAAATLFSLSLADENKIIIGG-S 454

Query:   503 RVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV-----LP 557
               +  L+DL++ G    K+DA  A+ NL       GR V  GIV  + + +       + 
Sbjct:   455 GAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMV 514

Query:   558 EESVTILEAVVK-RGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEM 616
             +E++TIL  +   +   +AIV A NT+  L  +L+     +RE+AAA L+++C++   ++
Sbjct:   515 DEALTILSVLANNQDAKSAIVKA-NTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKL 573

Query:   617 VADIAAVPGIERVIWELMESGT 638
             +  I  +  +  ++ +L ++GT
Sbjct:   574 IT-IGRLGAVVPLM-DLSKNGT 593

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 170/616 (27%), Positives = 311/616 (50%)

Query:    30 LVESLLILSQEVSSMKPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFE 89
             LV  ++ + + +  +   +   Q+ C +++R++K+L  F +E+      F SP       
Sbjct:    53 LVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRG----FESPSCKHFLN 108

Query:    90 EMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDV 149
              +  V    K L+E C NGSK+++ +  ET    FH +   L+ +L   P  EL +S D 
Sbjct:   109 RLRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDA 168

Query:   150 EDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRN 209
             +D +  + KQ  K  +    D++D +L + ++    +       D +I++++ + L L+ 
Sbjct:   169 KDEIDSLCKQLKKAKRRT--DTQDIELAVDMMVVFSKTDPRNA-DSAIIERLAKKLELQT 225

Query:   210 SSACKXXXXXXXXXXQNQ--TDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKS 267
                 K          Q++   + ++K     L+   ++ K     A+       + +  +
Sbjct:   226 IDDLKTETIAIQSLIQDKGGLNIETKQHIIELLN--KFKKLQGLEATDILYQPVINKAIT 283

Query:   268 ASDANV-PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326
              S + + P +F CPI+LE+M +PV++ATGQTY+++SI  W ++GH TCPKT Q L H +L
Sbjct:   284 KSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSL 343

Query:   327 VTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSM 386
               N ALKNLI  WC +     ++    ++V+    N+      K   S L+  L++SQ +
Sbjct:   344 APNFALKNLIMQWCEKN----NFKIPEKEVSPDSQNEQ-----KDEVSLLVEALSSSQ-L 393

Query:   387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNL 445
             E    +V ++R L++ + ++R  IA AGAI LL + L  PD+      +Q NAVTT+LNL
Sbjct:   394 EEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSG-----IQENAVTTLLNL 448

Query:   446 SILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVV 505
             SI E NK +++  EGA+  +IE+L +G   EA+ N+AA +FSLS +  ++ T+G    + 
Sbjct:   449 SIDEVNK-KLISNEGAIPNIIEILENGNR-EARENSAAALFSLSMLDENKVTIGLSNGIP 506

Query:   506 KGLMDLVKGGPTSSKR--DALVAI-LNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVT 562
               +  L  G     K    AL  + LN A     +   + + ++ ++ +    + +E+++
Sbjct:   507 PLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALS 566

Query:   563 ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAA 622
             IL  +         +   + I+ L   +R+G+  ++E A + L+ +     S ++A +  
Sbjct:   567 ILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQF 626

Query:   623 VPGIERVIWELMESGT 638
               G+   + E+  SGT
Sbjct:   627 --GVYEYLVEITTSGT 640

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 142/381 (37%), Positives = 218/381 (57%)

Query:   266 KSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN 325
             + + +  +P DF CPISLELM++P +V+TGQTY+R  I  WI+ G+ +CPKT Q L +  
Sbjct:   236 QKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFT 295

Query:   326 LVTNTALKNLIALWCREQRI--PFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATS 383
             L  N  L++LI+ WC +  I  P  Y     K +       + + + + A  L+ KL+ S
Sbjct:   296 LTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRA--LVCKLS-S 352

Query:   384 QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL 443
             QS+E    AV E+RSLSK  +D+R  IAEAGAI +L + L  D  +     Q NAVT IL
Sbjct:   353 QSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTET---QENAVTCIL 409

Query:   444 NLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR 503
             NLSI E NK  IM   GA+  ++ VLR+G+  EA+ NAAAT+FSLS    ++  +G    
Sbjct:   410 NLSIYEHNKELIM-LAGAVTSIVLVLRAGSM-EARENAAATLFSLSLADENKIIIGASGA 467

Query:   504 VVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM-----DVLPE 558
             ++  L+DL++ G    K+DA  A+ NL   +   GR V  GIV+ + + +     + + +
Sbjct:   468 IM-ALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMAD 526

Query:   559 ESVTILEAVVKRG-GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV 617
             E++TIL  +       TAI+ A N I  L   L++    +RE+AAA L+ +C++   +++
Sbjct:   527 EALTILSVLASNQVAKTAILRA-NAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLI 585

Query:   618 ADIAAVPGIERVIWELMESGT 638
             + I  +  +  ++ EL   GT
Sbjct:   586 S-IGRLGAVVPLM-ELSRDGT 604

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZW3	PUB16_ARATH	6, ., 3, ., 2, ., -	0.5988	0.9648	0.9777	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	683
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-24
pfam04564	73	pfam04564, U-box, U-box domain	2e-18
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	6e-05
smart00184	40	smart00184, RING, Ring finger	0.001

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 97.3 bits (243), Expect = 1e-24
 Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNL 335
           +F CPISLE+M++PV++ +GQTY+R +I  W+ S H T P TGQ L H +L+ N ALK+ 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 336 IALW 339
           I  W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 30/73 (41%), Positives = 42/73 (57%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTAL 332
           +P +F  PI+LELM++PV++ +G TYDR +I   + S   T P T + L H  L+ N  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 333 KNLIALWCREQRI 345
           K  I  W  E R 
Sbjct: 61  KEKIDAWLEENRW 73

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 277 FRCPISLELMRN----PVVVATGQTYDRQSI-SLWIESGHNTCP 315
           F CPIS E+M +    PV++  G  Y R+++  L    G   CP
Sbjct: 11  FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 279 CPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCP 315
           CPI LE      V+   G T+ R  I  W+ESG+NTCP
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCP 38

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	683
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.91
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.88
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.88
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.84
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.81
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.74
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.69
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.68
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.6
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.6
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.53
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.46
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.45
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.38
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.31
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.27
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.16
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.1
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.08
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.07
PRK09687	280	putative lyase; Provisional	98.92
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.92
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.89
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.84
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.81
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.8
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.75
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.74
PRK09687	280	putative lyase; Provisional	98.72
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.7
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.68
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.57
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.54
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.51
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.48
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.39
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.38
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.27
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.26
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.26
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.25
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.2
PHA02929	238	N1R/p28-like protein; Provisional	98.19
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.18
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.17
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.15
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.11
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.11
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.09
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.06
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.04
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.04
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.01
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.0
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.97
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	97.97
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.95
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.93
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.91
PF05536	543	Neurochondrin: Neurochondrin	97.9
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.86
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.86
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.85
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.84
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.8
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.8
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.8
TIGR02270	410	conserved hypothetical protein. Members are found	97.72
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.71
PHA02926	242	zinc finger-like protein; Provisional	97.7
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.69
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.68
PF05536	543	Neurochondrin: Neurochondrin	97.65
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.61
PTZ00429	746	beta-adaptin; Provisional	97.56
KOG0289	506	consensus mRNA splicing factor [General function p	97.49
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.46
PTZ00429	746	beta-adaptin; Provisional	97.43
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.43
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.39
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.37
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.36
PF14634	44	zf-RING_5: zinc-RING finger domain	97.36
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.33
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.32
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.28
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.28
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.2
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.19
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.06
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.06
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.04
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.02
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.99
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.97
KOG2660	331	consensus Locus-specific chromosome binding protei	96.97
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.9
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.9
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.86
KOG1293	678	consensus Proteins containing armadillo/beta-caten	96.84
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.75
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.75
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.65
KOG3678	832	consensus SARM protein (with sterile alpha and arm	96.59
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.56
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.53
COG5369	743	Uncharacterized conserved protein [Function unknow	96.51
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.41
TIGR02270	410	conserved hypothetical protein. Members are found	96.34
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.31
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.22
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.2
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.17
PF04641	260	Rtf2: Rtf2 RING-finger	96.1
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.07
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.06
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.91
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	95.91
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.83
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	95.78
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.71
KOG4413	524	consensus 26S proteasome regulatory complex, subun	95.66
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.56
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.5
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	95.47
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.46
KOG2979	262	consensus Protein involved in DNA repair [General	95.46
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.46
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.37
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.33
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.2
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.08
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.03
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.02
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.0
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.96
KOG3036	293	consensus Protein involved in cell differentiation	94.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.95
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.92
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.83
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.66
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.46
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.42
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.34
COG5369	743	Uncharacterized conserved protein [Function unknow	94.19
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.1
COG5152	259	Uncharacterized conserved protein, contains RING a	93.65
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.54
KOG1242	569	consensus Protein containing adaptin N-terminal re	93.54
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.32
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.31
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.21
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.21
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.13
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.06
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	92.97
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.88
KOG3113	293	consensus Uncharacterized conserved protein [Funct	92.62
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.54
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.49
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	92.47
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	92.47
KOG1824	1233	consensus TATA-binding protein-interacting protein	92.34
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	92.05
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.7
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	91.52
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.48
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	91.46
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	91.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	91.22
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.15
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.15
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.07
KOG3036	293	consensus Protein involved in cell differentiation	90.98
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	90.75
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	90.69
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.66
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	90.47
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	90.28
KOG1824	1233	consensus TATA-binding protein-interacting protein	90.28
PF05004	309	IFRD: Interferon-related developmental regulator (	90.1
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.03
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.87
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	89.79
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	89.76
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	89.53
PF05004	309	IFRD: Interferon-related developmental regulator (	88.77
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	88.65
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	88.35
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	87.63
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	87.59
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	87.53
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	87.38
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	87.15
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	86.82
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	86.67
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	86.65
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	86.57
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	86.28
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.2
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.58
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.18
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	85.16
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	85.11
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	84.91
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.76
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	84.58
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	84.54
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	84.53
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	84.17
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	83.49
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	83.4
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	83.07
PF04641	260	Rtf2: Rtf2 RING-finger	82.87
COG5175	480	MOT2 Transcriptional repressor [Transcription]	82.79
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	82.66
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.56
PF08045	257	CDC14: Cell division control protein 14, SIN compo	82.46
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	82.45
KOG0301	745	consensus Phospholipase A2-activating protein (con	81.96
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	81.89
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	81.54
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	81.53
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	81.29
KOG1001	674	consensus Helicase-like transcription factor HLTF/	81.22
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	80.47

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=5.1e-26  Score=277.88  Aligned_cols=278  Identities=20%  Similarity=0.209  Sum_probs=237.6

Q ss_pred             hhhhHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          369 TKMTASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      ..+.+..|++.|.++ .+++.++.|+..|+.+++.+++||..|++ .|+||.|+.+|.++    +..+|++|+++|.||+
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg----~~~vk~nAaaaL~nLS   86 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG----TLGAKVNAAAVLGVLC   86 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC----CHHHHHHHHHHHHHHh
Confidence            345678899999865 26789999999999999999999999997 79999999999998    9999999999999999


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHHHHHHhhcCCCh---hHH
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVKGLMDLVKGGPT---SSK  520 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~~Lv~lL~~~~~---~~~  520 (683)
                      .+++++..|+.. |+|++|+++|++| ++++|++|+++|++|+.+   +.++..|+...|+||+|+.+|++++.   ..+
T Consensus        87 ~~e~nk~~Iv~~-GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~  164 (2102)
T PLN03200         87 KEEDLRVKVLLG-GCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVE  164 (2102)
T ss_pred             cCHHHHHHHHHc-CChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHH
Confidence            999999999987 9999999999999 799999999999999987   45666766558999999999998753   244


Q ss_pred             HHHHHHHHHhcCCcchhHH-HHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhcCC
Q 048793          521 RDALVAILNLAGDRETVGR-LVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLREGS  594 (683)
Q Consensus       521 ~~A~~aL~nLs~~~~n~~~-iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~~s  594 (683)
                      +.|+.+|+|||.+++|+.+ ++++|+|+.|+++|.++ +.....|+.+|.+++.+ .+.   +.+.|++|.|+++|++++
T Consensus       165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~  244 (2102)
T PLN03200        165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN  244 (2102)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence            6778999999999999865 58999999999999864 44578888888766533 433   345699999999998754


Q ss_pred             -hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC---------HHHHHHHHHHHHHHHh
Q 048793          595 -DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT---------ARARRKAAALLRILRR  654 (683)
Q Consensus       595 -~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~---------~~~k~kA~~lL~~l~~  654 (683)
                       +.+|++|+++|.+||.++  ...+..+.+.|+++.|+.++.+.+         ...++.|.|.|.++.+
T Consensus       245 ~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        245 EVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             ChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence             589999999999999864  345667888999999999987654         3459999999999877

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=5.6e-26  Score=277.57  Aligned_cols=285  Identities=18%  Similarity=0.197  Sum_probs=240.0

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .+|+++.|+++|+++ +...|..|++.|++++..+++++..|+++|+||.|+.+|.++    +..+|++|+++|.|++.+
T Consensus       444 ~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~----~~~iqeeAawAL~NLa~~  518 (2102)
T PLN03200        444 GREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG----SQKAKEDSATVLWNLCCH  518 (2102)
T ss_pred             HcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence            678999999999998 999999999999999999988999999999999999999999    999999999999999998


Q ss_pred             chhHHHHh-cccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc----------------------------------
Q 048793          449 EANKTRIM-ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA----------------------------------  493 (683)
Q Consensus       449 ~~~k~~I~-~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~----------------------------------  493 (683)
                      +++++.++ .. |+|++|+++|+++ +.+.++.|+++|++|+...+                                  
T Consensus       519 ~~qir~iV~~a-GAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~  596 (2102)
T PLN03200        519 SEDIRACVESA-GAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS  596 (2102)
T ss_pred             cHHHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence            77766666 55 9999999999999 79999999999999952111                                  


Q ss_pred             ----------------------------------------------hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          494 ----------------------------------------------HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       494 ----------------------------------------------~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                                                                    ++..++. .|+|++|+.+|.+++.+.++.|+++|
T Consensus       597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LLss~~~~v~keAA~AL  675 (2102)
T PLN03200        597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLLTNNTEAVATQSARAL  675 (2102)
T ss_pred             hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCChHHHHHHHHHH
Confidence                                                          1122233 56777777777777777778888999


Q ss_pred             HHhcC--CcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHH---cCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAG--DRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAA---YNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~--~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .||..  +++|+..++++|+|++|+++|.+. .+..+.|+.+|.+++...++..+   .|+++.|+++|++|++++|++|
T Consensus       676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~A  755 (2102)
T PLN03200        676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNA  755 (2102)
T ss_pred             HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHH
Confidence            99985  445778889999999999999864 45688889998888877766543   4789999999999999999999


Q ss_pred             HHHHHHHHhcCCch-HHHHHHhcCCcHHHHHHHhhcCCHHHHHH--HHHHHHHHHhhhccccc
Q 048793          602 AATLVTICRKGGSE-MVADIAAVPGIERVIWELMESGTARARRK--AAALLRILRRWAAGLDA  661 (683)
Q Consensus       602 ~~aL~~L~~~~~~~-~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k--A~~lL~~l~~~~~~~~~  661 (683)
                      +++|++||++.+.. .....+...|.+..|+.++...+.+....  |...|.+|.+...+..+
T Consensus       756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~  818 (2102)
T PLN03200        756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF  818 (2102)
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence            99999999987743 35566788999999999999988777765  88999999887666554

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7e-25  Score=237.29  Aligned_cols=278  Identities=16%  Similarity=0.211  Sum_probs=236.3

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .|.|+.+|..|..+.++..|.+|+|+|.++|.++.+.-..++++|++|.++.+|.++    +..+++.|+++|.|++.+.
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~----~~~v~eQavWALgNIagds  183 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP----SADVREQAVWALGNIAGDS  183 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC----cHHHHHHHHHHHhccccCC
Confidence            389999999998764799999999999999999999999999999999999999999    9999999999999999886


Q ss_pred             hh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          450 AN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       450 ~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                      .. |..+... |++++|..++..........+++|+|.|||.+......+.....++|.|..+|.+.++.+..+|+|||.
T Consensus       184 ~~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls  262 (514)
T KOG0166|consen  184 PDCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS  262 (514)
T ss_pred             hHHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55 5555565 999999999987744478899999999999988666665555789999999999999999999999999


Q ss_pred             HhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHHHH---HHcCchHHHHHHHh-cCChHHHHHH
Q 048793          529 NLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTAIV---AAYNTIKKLCILLR-EGSDTSRESA  601 (683)
Q Consensus       529 nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e~~---~~~g~v~~Lv~lL~-~~s~~~ke~A  601 (683)
                      +|+.+. +....++++|+++.||++|... ......||..+.++. |+.+..   ...|.++.|..++. +.....|+.|
T Consensus       263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA  342 (514)
T KOG0166|consen  263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA  342 (514)
T ss_pred             HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence            999765 5667778999999999999854 334567777777755 444433   33488999999997 4455688999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      +|++.||+.+..  ...+.+...|++|.|+.+++++..+.|+.|+|++.++..
T Consensus       343 cW~iSNItAG~~--~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  343 CWTISNITAGNQ--EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             HHHHHHhhcCCH--HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence            999999999543  345557788999999999999999999999999998865

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.3e-23  Score=211.30  Aligned_cols=272  Identities=22%  Similarity=0.289  Sum_probs=235.9

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      +...|+..+..+ ..+.|+.++++|.+|+..+ +||..|+..|++.+|.++-++.    |..+|.++..+|.|+....+|
T Consensus       127 Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLaksk----dirvqrnatgaLlnmThs~En  200 (550)
T KOG4224|consen  127 GLDLLILQMMTD-GVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAKSK----DIRVQRNATGALLNMTHSREN  200 (550)
T ss_pred             ChHHHHHHhcCC-CcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcccc----hhhHHHHHHHHHHHhhhhhhh
Confidence            444555555555 6889999999999999985 5999999999999999988888    999999999999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc--cHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR--VVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G--~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      |+.++.+ |++|.||.+++++ +..++..++.++.+++.+..+|..+++ +|  .|+.||.+..+++++++-.|..||.|
T Consensus       201 Rr~LV~a-G~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  201 RRVLVHA-GGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhcc-CCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhh
Confidence            9999998 9999999999999 799999999999999999999999988 77  99999999999999999999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHH---HHHcCCcHHHHHHcCchHHHHHHHhcCCh-HHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEA---VVKRGGLTAIVAAYNTIKKLCILLREGSD-TSRESAAAT  604 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~---L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~-~~ke~A~~a  604 (683)
                      |+.+.+-...++++|.+|.++++|.+. -......++.   ++....+.-.+.+.|.+.+||.+|+-+.. +.|-+|+.+
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvst  357 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVST  357 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence            999999999999999999999999854 2223333333   44444556667777999999999987654 599999999


Q ss_pred             HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ||+|+..+.  ....++.+.|++|.|.+|+.+|.-.+|..-...+..|.-
T Consensus       358 LrnLAasse--~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  358 LRNLAASSE--HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             HHHHhhhhh--hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            999998543  335568899999999999999999999988888888765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=7.4e-23  Score=207.70  Aligned_cols=274  Identities=14%  Similarity=0.180  Sum_probs=241.0

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|+...+.++-++. +..+|++|.++|.+++... +||+.++.+|++|.||.+|+++    |..+|..+.+++.|++.+
T Consensus       165 ~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~----d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  165 RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSG----DLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccC----ChhHHHHHHHHhhhhhhh
Confidence            345666677755566 8899999999999998755 6999999999999999999999    999999999999999999


Q ss_pred             chhHHHHhcccC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          449 EANKTRIMETEG--ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       449 ~~~k~~I~~~~G--~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      ..+|+.++++ |  .++.||.++..| ++.++-.|.-+|.+|+...++...|++ +|.+|.+|++|+++.-......+.+
T Consensus       239 ~~~Rk~Laqa-ep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaC  315 (550)
T KOG4224|consen  239 RRARKILAQA-EPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVAC  315 (550)
T ss_pred             HHHHHHHHhc-ccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHH
Confidence            9999988876 6  999999999999 799999999999999999999999999 9999999999988766666778899


Q ss_pred             HHHhcCCcchhHHHHhcCchHHHHHHhcc--CchhHHHHHHHHHHcCCcH----HHHHHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAGDRETVGRLVERGIVEIVAEAMDV--LPEESVTILEAVVKRGGLT----AIVAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~~~~n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L~~l~~~~----e~~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      +.|++.++-|-..++++|.+.+||.+|..  +.+..-.|..+|.++++..    ..+...|+++.+..++..++-..++.
T Consensus       316 IrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  316 IRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             HhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence            99999999999999999999999999974  3446788888998888633    24455599999999999999999988


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      -.+++..|+-+..+   +..+.+.|+++.|+.+..+.+..++.+|+..|-+|+.
T Consensus       396 isac~a~Lal~d~~---k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  396 ISACIAQLALNDND---KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHHHHHHhcccc---HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            88888888875544   4457789999999999999999999999999999876

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.88  E-value=4.4e-22  Score=200.52  Aligned_cols=282  Identities=16%  Similarity=0.138  Sum_probs=229.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.||.+|+++...+..-.+.+|+|+|.+++.......+.++++|++|.++.+|.++    +.++++.++++|.|++.+
T Consensus       112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGD  187 (526)
T COG5064         112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGD  187 (526)
T ss_pred             hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCC
Confidence            4688999999996543566789999999999998886777788999999999999999    899999999999999998


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      .+.++.++-..|++++++.+|.+.. +....+++.|+|.|||........-.....++|.|.+|+.+.++++..+|+|||
T Consensus       188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi  267 (526)
T COG5064         188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI  267 (526)
T ss_pred             chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            7665555533499999999998653 257889999999999987543322222246899999999999999999999999


Q ss_pred             HHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHH---HHHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTA---IVAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .+|+..+. ....+++.|+.+.|+++|... ......|+....++. |+..   .+...|.++++..+|.+.....|..|
T Consensus       268 SYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEa  347 (526)
T COG5064         268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA  347 (526)
T ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhh
Confidence            99999875 456668999999999999853 233555666665543 3322   34445889999999988888999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +|++.++...+  ....+.+.+..++|+|+.++....-++|+.|+|.+.+.....
T Consensus       348 CWTiSNITAGn--teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg  400 (526)
T COG5064         348 CWTISNITAGN--TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG  400 (526)
T ss_pred             heeecccccCC--HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999998854  334566788999999999999999999999999999887643

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=8.5e-21  Score=205.73  Aligned_cols=282  Identities=18%  Similarity=0.173  Sum_probs=240.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLP-NLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~-~~qe~A~~aL~nLs~  447 (683)
                      ..|+++.++.+|.++ +.++++.|+|+|.+++.+++..|..+.+.|++++|+.++...    +. ....++.|+|.||+.
T Consensus       150 ~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~----~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  150 DAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS----DKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             cCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc----cchHHHHHHHHHHHHHHc
Confidence            568899999999999 999999999999999999999999999999999999999887    54 688899999999998


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      +.+-...+.....++|.|..+|.+. |.++...|+|+|.+|+.....+..++-..|+++.||.+|.+.+..++.-|++++
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai  303 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI  303 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence            7532122111125899999999988 799999999999999998887877777799999999999999888999999999


Q ss_pred             HHhcCCcchh-HHHHhcCchHHHHHHhccC-ch-hHHHHHHHHHHcC-CcHHHHHH---cCchHHHHHHHhcCChHHHHH
Q 048793          528 LNLAGDRETV-GRLVERGIVEIVAEAMDVL-PE-ESVTILEAVVKRG-GLTAIVAA---YNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       528 ~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~-~~~~aL~~L~~l~-~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      .|+..+.+.. ..++++|+++.|..+|... .+ ...+|.+++.+++ |+.+.+.+   .|-+|.|+.+|+++.-+.|..
T Consensus       304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE  383 (514)
T KOG0166|consen  304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE  383 (514)
T ss_pred             cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence            9999887764 5558999999999999844 33 4677888888754 66655444   488999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      |+|++.|++..+.. .+...+.+.|++++|..|+.-.+.+.-..+...|+++.+..+
T Consensus       384 AawaIsN~ts~g~~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e  439 (514)
T KOG0166|consen  384 AAWAISNLTSSGTP-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE  439 (514)
T ss_pred             HHHHHHhhcccCCH-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence            99999999987664 456667889999999999977788888888888888887543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.84  E-value=2.4e-21  Score=159.64  Aligned_cols=72  Identities=44%  Similarity=0.898  Sum_probs=63.9

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR  344 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  344 (683)
                      ||++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+++||..||+.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            699999999999999999999999999999999999988999999999999999999999999999999985

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.81  E-value=1.8e-18  Score=174.60  Aligned_cols=279  Identities=15%  Similarity=0.134  Sum_probs=233.9

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|+||.++.+|.++ +.+++..|+|+|.+++.+++..|..+.+.|++.+|+.+|.+..  .+..+..++.+.|.||+.+
T Consensus       155 d~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         155 DAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             eCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHHHHHHhHHHHHHhhCC
Confidence            568899999999999 8999999999999999999999999999999999999988761  1457889999999999975


Q ss_pred             c---hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793          449 E---ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV  525 (683)
Q Consensus       449 ~---~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~  525 (683)
                      .   .+-..| .  -++|.|.+++.+. ++++...|+|+|.+|+.....+..++-..|..+-||++|.+++..+..-|++
T Consensus       232 knP~P~w~~i-s--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         232 KNPPPDWSNI-S--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             CCCCCchHHH-H--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            2   222333 3  3699999999888 7999999999999999998888877776899999999999998889999999


Q ss_pred             HHHHhcCCcch-hHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHc-CCcHHHHHH---cCchHHHHHHHhcCChHHHH
Q 048793          526 AILNLAGDRET-VGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKR-GGLTAIVAA---YNTIKKLCILLREGSDTSRE  599 (683)
Q Consensus       526 aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l-~~~~e~~~~---~g~v~~Lv~lL~~~s~~~ke  599 (683)
                      .+.|+....+. -+.++++|+++++-.+|++.. ....+|++.+.++ +|+.+.+++   ..-+|.|+++|....-.+|.
T Consensus       308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK  387 (526)
T COG5064         308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK  387 (526)
T ss_pred             hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            99999887665 455689999999999998643 3467778888775 577665544   36799999999998999999


Q ss_pred             HHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          600 SAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .|+|++.+...++.. ..+...+...|++++|..++.-.+.++-+.|...+++.-+
T Consensus       388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            999999998775543 2445667889999999999998888888888877777765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.74  E-value=2.7e-16  Score=179.64  Aligned_cols=271  Identities=17%  Similarity=0.184  Sum_probs=221.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .++.|+.|++.|.++ +.+....+++.|.+|+.... |+..|++.|+||.|++++.++    +..++..++.+|+|||.+
T Consensus       288 ~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~----~~~l~~~aLrlL~NLSfd  361 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSE----NEDLVNVALRLLFNLSFD  361 (708)
T ss_pred             hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCC----CHHHHHHHHHHHHHhCcC
Confidence            688999999999998 99999999999999998764 999999999999999999998    899999999999999999


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAI  527 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL  527 (683)
                      .+.|..|+.. |+||.|+.+|.++   ..+..+..+|++||..+++|..+.. .++||.|+++|-++ +++...+++.++
T Consensus       362 ~~~R~~mV~~-GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~  436 (708)
T PF05804_consen  362 PELRSQMVSL-GLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALL  436 (708)
T ss_pred             HHHHHHHHHC-CCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHH
Confidence            9999999998 9999999999754   4667899999999999999999988 78999999987654 455677889999


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHH--cCchHHHHHHHhcC-ChHHHHHHHHH
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAA--YNTIKKLCILLREG-SDTSRESAAAT  604 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~--~g~v~~Lv~lL~~~-s~~~ke~A~~a  604 (683)
                      .||+.++.|...+++.|+++.|++......+.  -.+..+.+++.++.....  .+.++.|+.++..+ +....-.+.++
T Consensus       437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~--lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi  514 (708)
T PF05804_consen  437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDP--LLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGI  514 (708)
T ss_pred             HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence            99999999999999999999999987644332  123444555544321111  24567777777654 66677888888


Q ss_pred             HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 048793          605 LVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAALLRILRR  654 (683)
Q Consensus       605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~lL~~l~~  654 (683)
                      |.||...+  .....++.+.+++|.|..++..|  .+.+.-.+..++..+..
T Consensus       515 LaNL~~~~--ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~  564 (708)
T PF05804_consen  515 LANLTIPD--LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS  564 (708)
T ss_pred             HHhcccCC--cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence            88887643  24677788899999999999887  34566666666666554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.1e-16  Score=153.53  Aligned_cols=242  Identities=21%  Similarity=0.281  Sum_probs=179.6

Q ss_pred             HHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchH--------HHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 048793           67 LFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM--------WLLMQIETAANNFHELTIDLSTLLDIM  138 (683)
Q Consensus        67 ~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~skl--------yl~~~~~~~~~~~~~~~~~l~~~l~~~  138 (683)
                      ..-++|.-+... .+--.+.+++.|.  ++.|.....||+..-.|        |++.++......|.+++..|.+++++.
T Consensus        32 ~y~raI~~nP~~-~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   32 CYSRAICINPTV-ASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHhcCCCc-chhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            445556555443 3445588999666  99999999999987666        999999999999999999999999998


Q ss_pred             CCccccchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCCCHHHHHHHHH
Q 048793          139 PLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIE  218 (683)
Q Consensus       139 p~~~~~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~~~~~~~~E~~  218 (683)
                      -.+.+...++|-.++.+++++.|...+..|+ .++.++.+.+.+++......      .+.+.-+. | -+...++.-  
T Consensus       109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri-~Q~~El~~yl~slie~~~~~------~~s~~~~N-~-~sde~~k~~--  177 (284)
T KOG4642|consen  109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRI-RQELELHSYLESLIEGDRER------ELSEWQEN-G-ESDEHLKTM--  177 (284)
T ss_pred             hcCCCCCcchHHHHHHHHHhCccchhHHHHH-HHHhhHHHHHHHHhccchhh------HHHHHHHc-C-CChHHHhhh--
Confidence            6666778899999999999998877555565 57778888887777542111      12111111 2 222222221  


Q ss_pred             HHHHHHhhhcccccHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCcccc
Q 048793          219 SLEEEIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTY  298 (683)
Q Consensus       219 ~l~~e~~~~~~~~~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty  298 (683)
                        +..|+.. .+.....|+.|           |..++      +.+.    ..++|+.++|.||+++|+|||++|+|.||
T Consensus       178 --q~~~~~~-~d~~~kel~el-----------f~~v~------e~rk----~rEvpd~lcgkIt~el~~~pvi~psgIty  233 (284)
T KOG4642|consen  178 --QVPIEQD-HDHTTKELSEL-----------FSKVD------EKRK----KREVPDYLCGKITLELMREPVITPSGITY  233 (284)
T ss_pred             --cchhHHH-HHHHHHHHHHH-----------HHHHH------HHhc----cccccchhhhhhhHHhhcCCccCccccch
Confidence              1122111 13344455554           33222      2233    35799999999999999999999999999


Q ss_pred             chhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCC
Q 048793          299 DRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIP  346 (683)
Q Consensus       299 ~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  346 (683)
                      +|..|.+++..-+...|+|+.+|+..+++||++|+..|..|...|+|.
T Consensus       234 ~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~  281 (284)
T KOG4642|consen  234 DRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA  281 (284)
T ss_pred             hHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence            999999999987779999999999999999999999999999999875

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.68  E-value=6.1e-15  Score=168.59  Aligned_cols=251  Identities=18%  Similarity=0.196  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHH
Q 048793          386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGV  465 (683)
Q Consensus       386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~L  465 (683)
                      ....+.+...|.+++.+. .+...+.+.|+|+.|+++|.++    +.++...++++|.+||...+||..|++. |+|+.|
T Consensus       263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~----n~ellil~v~fLkkLSi~~ENK~~m~~~-giV~kL  336 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRE----NEELLILAVTFLKKLSIFKENKDEMAES-GIVEKL  336 (708)
T ss_pred             HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHH
Confidence            445567788899998866 5888999999999999999998    9999999999999999999999999998 999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCc
Q 048793          466 IEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGI  545 (683)
Q Consensus       466 v~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~  545 (683)
                      ++++.++ +.+.+..+.++|+|||.+.+.|..++. .|+||.|+.+|.+++  .+..++.+|++||..+++|..+...++
T Consensus       337 ~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Tdc  412 (708)
T PF05804_consen  337 LKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDC  412 (708)
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcch
Confidence            9999988 689999999999999999999999999 899999999998654  556799999999999999999999999


Q ss_pred             hHHHHHHhccC--chhHHHHHHHHHHcCCcHHH---HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 048793          546 VEIVAEAMDVL--PEESVTILEAVVKRGGLTAI---VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADI  620 (683)
Q Consensus       546 V~~Lv~lL~~~--~~~~~~aL~~L~~l~~~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~  620 (683)
                      ||.|+++|..+  +......++.+.+++.++..   ..+.++++.|++...+..+   .....++.|++.|.+.  .+..
T Consensus       413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~--~k~~  487 (708)
T PF05804_consen  413 IPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP--LKEL  487 (708)
T ss_pred             HHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch--HHHH
Confidence            99999988654  22344567777777766543   3444778888887544332   2245688999998754  2333


Q ss_pred             HhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 048793          621 AAVPGIERVIWELMESG-TARARRKAAALLRILR  653 (683)
Q Consensus       621 ~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~  653 (683)
                      +  .+.+..|+.++..+ ++...-.+..+|.+|.
T Consensus       488 f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  488 F--VDFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            3  35777777777776 5667777777777775

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.63  E-value=1.4e-14  Score=162.16  Aligned_cols=276  Identities=18%  Similarity=0.156  Sum_probs=223.7

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC---
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL---  448 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~---  448 (683)
                      .++..+.+|.+. ++..|-+|+..|..++..+...|..+.+.|+||.||.+|.+.    ..++|.+|+++|.||...   
T Consensus       234 ~lpe~i~mL~~q-~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~----~~evq~~acgaLRNLvf~~~~  308 (717)
T KOG1048|consen  234 TLPEVISMLMSQ-DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR----NDEVQRQACGALRNLVFGKST  308 (717)
T ss_pred             ccHHHHHHHhcc-ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC----cHHHHHHHHHHHHhhhcccCC
Confidence            466778899988 999999999999999999999999999999999999999999    999999999999999854   


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC-------------
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG-------------  515 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~-------------  515 (683)
                      ++||..|.+. ++|+.++++|+...|.++++..+.+|+||++.|.-|..|..  .++..|.+-+-.+             
T Consensus       309 ~~NKlai~~~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  309 DSNKLAIKEL-NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             cccchhhhhc-CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccccc
Confidence            4689999998 99999999999744899999999999999999988888875  6788888765321             


Q ss_pred             -ChhHHHHHHHHHHHhcC-CcchhHHHHh-cCchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHH---------H
Q 048793          516 -PTSSKRDALVAILNLAG-DRETVGRLVE-RGIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTA---------I  576 (683)
Q Consensus       516 -~~~~~~~A~~aL~nLs~-~~~n~~~iv~-aG~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e---------~  576 (683)
                       +..+..++..+|.|++. ..+.+.+|-+ .|.|..|+..+..       +...++.|+++|.+++-.-+         .
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~  465 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV  465 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence             13466899999999988 6788999977 5999999998861       23349999999988662211         0


Q ss_pred             H-----------------------HH----------------cCc-----hHHHHHH----Hh-cCChHHHHHHHHHHHH
Q 048793          577 V-----------------------AA----------------YNT-----IKKLCIL----LR-EGSDTSRESAAATLVT  607 (683)
Q Consensus       577 ~-----------------------~~----------------~g~-----v~~Lv~l----L~-~~s~~~ke~A~~aL~~  607 (683)
                      .                       ..                ..+     -+.+++.    |. ...+.+.|.++++|-+
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence            0                       00                001     1233332    32 4678899999999999


Q ss_pred             HHhcCCc--h-HHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          608 ICRKGGS--E-MVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       608 L~~~~~~--~-~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      |+....-  . ....++....+.+.|++|++.+++++.+-++.+|++|+.-
T Consensus       546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            9986652  2 3344447888999999999999999999999999999884

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.60  E-value=3.7e-14  Score=163.87  Aligned_cols=289  Identities=20%  Similarity=0.176  Sum_probs=226.0

Q ss_pred             HHHhhhhHHHHHHHhccC-------CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC--CCC------C
Q 048793          366 LEATKMTASFLINKLATS-------QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD--TAS------R  430 (683)
Q Consensus       366 i~~~~~~i~~Lv~~L~s~-------~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~--~~~------~  430 (683)
                      ++..+....++..+|...       .+..-.+.|+..|..++.+ +++|..|-+.|++..+-.||.-.  +..      .
T Consensus       285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~  363 (2195)
T KOG2122|consen  285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGE  363 (2195)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHH
Confidence            344455556666666543       1233445788888888765 56999999999999998877522  110      1


Q ss_pred             ChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHH
Q 048793          431 LPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGL  508 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~L  508 (683)
                      ...++.+|.++|-||..++ .||..+-...|+|+.+|..|.+. ..+..+--+.+|+||+= .|.|-..+....|-|.+|
T Consensus       364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL  442 (2195)
T KOG2122|consen  364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL  442 (2195)
T ss_pred             HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence            3468999999999999765 67877777669999999999987 57899999999999994 455655555558999999


Q ss_pred             HHh-hcCCChhHHHHHHHHHHHhcCC-cchhHHHHh-cCchHHHHHHhccC-c----hhHHHHHHHHHHcC----CcH--
Q 048793          509 MDL-VKGGPTSSKRDALVAILNLAGD-RETVGRLVE-RGIVEIVAEAMDVL-P----EESVTILEAVVKRG----GLT--  574 (683)
Q Consensus       509 v~l-L~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~-aG~V~~Lv~lL~~~-~----~~~~~aL~~L~~l~----~~~--  574 (683)
                      +.. +.+......+..+.|||||+.| .+|+..|+. -|++..||.+|.-. +    ...+.+=++|.+.+    .+.  
T Consensus       443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y  522 (2195)
T KOG2122|consen  443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY  522 (2195)
T ss_pred             HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence            975 5666667889999999999886 689999988 59999999999732 1    23667777776643    332  


Q ss_pred             -HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          575 -AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       575 -e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                       ++......+..|+..|++.|-.+..|++++||||...++.  -++++++.|+++.|..|+++.+..+-+-++..|++|-
T Consensus       523 RQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~--DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  523 RQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE--DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             HHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH--HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence             2334447788899999999999999999999999987764  3678999999999999999999999999999999998


Q ss_pred             hhhcc
Q 048793          654 RWAAG  658 (683)
Q Consensus       654 ~~~~~  658 (683)
                      .|+++
T Consensus       601 n~RPA  605 (2195)
T KOG2122|consen  601 NFRPA  605 (2195)
T ss_pred             cCCch
Confidence            88755

>smart00504 Ubox Modified RING finger domain

Probab=99.60  E-value=8.4e-16  Score=123.24  Aligned_cols=63  Identities=52%  Similarity=0.992  Sum_probs=60.0

Q ss_pred             cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793          276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW  339 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  339 (683)
                      +|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|+++++..+++||..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999987 67999999999999999999999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=2.5e-12  Score=130.60  Aligned_cols=273  Identities=15%  Similarity=0.140  Sum_probs=214.1

Q ss_pred             HHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          373 ASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       373 i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ...++.+|... .+.+.....+..++.-+-.++.||..+++.|+.|.+...|....   ...+...+.+++.-|..+++.
T Consensus       147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g---k~~~VRel~~a~r~l~~dDDi  223 (461)
T KOG4199|consen  147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG---KTRTVRELYDAIRALLTDDDI  223 (461)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC---ccHHHHHHHHHHHHhcCCCce
Confidence            34456666432 26777788888899888888899999999999999997666541   335677788899988776654


Q ss_pred             H----------HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh-h--
Q 048793          452 K----------TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT-S--  518 (683)
Q Consensus       452 k----------~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~-~--  518 (683)
                      |          +.|++. |++..|++.|+.+.++.....++.+|..|+..++.+..|.+ .|++..|++++.+.+. .  
T Consensus       224 RV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r  301 (461)
T KOG4199|consen  224 RVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNR  301 (461)
T ss_pred             eeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHH
Confidence            3          567776 88999999999988899999999999999999999999999 8999999999987442 2  


Q ss_pred             -HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc---cCchhHHHHHHHHHHcC----CcHHHHHHcCchHHHHHHH
Q 048793          519 -SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD---VLPEESVTILEAVVKRG----GLTAIVAAYNTIKKLCILL  590 (683)
Q Consensus       519 -~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~---~~~~~~~~aL~~L~~l~----~~~e~~~~~g~v~~Lv~lL  590 (683)
                       ..+.++..|..|+.++.++..+|+.|+.+.++.++.   +++..++.++++++.++    .+.....+.|+....+.-|
T Consensus       302 ~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAm  381 (461)
T KOG4199|consen  302 TLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAM  381 (461)
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHH
Confidence             447889999999999999999999999999999885   34556777777776655    3344555567788888888


Q ss_pred             hcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          591 REG--SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       591 ~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      +..  ...++++|++++.||..++.+  .+..+...|+.. |+.......+....-|...||-|.
T Consensus       382 kahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~~GiE~-Li~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  382 KAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLANGIEK-LIRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHhccHHH-HHHHHHhcCccHHHHHHHHHHhcC
Confidence            753  456889999999999987654  345555666655 555666666667777777787664

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=2.1e-11  Score=123.91  Aligned_cols=262  Identities=16%  Similarity=0.211  Sum_probs=204.8

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc-cCchhHHHHhcccCcHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS-ILEANKTRIMETEGALN  463 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs-~~~~~k~~I~~~~G~I~  463 (683)
                      +.....+++.+|-.+...-+    .+.++-+...++.+|...+.  +.++....+..+..-+ .|+.||+.+++. |+++
T Consensus       120 ~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~--~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~  192 (461)
T KOG4199|consen  120 NESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVE--SEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILE  192 (461)
T ss_pred             chhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHH
Confidence            77788899999988876555    44566788889999876532  5566666666666655 578999999998 9999


Q ss_pred             HHHHHHh-cCCCHHHHHHHHHHHHHhhcCcc----------hhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHHHhc
Q 048793          464 GVIEVLR-SGATWEAKGNAAATIFSLSGVHA----------HRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAILNLA  531 (683)
Q Consensus       464 ~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~----------~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs  531 (683)
                      .+...|. +| .....+.++++++.|...|+          +...|+. .|+...|++.+..+ ++.....+..+|..|+
T Consensus       193 Li~~~l~~~g-k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA  270 (461)
T KOG4199|consen  193 LILQVLNREG-KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALA  270 (461)
T ss_pred             HHHHHHcccC-ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            9997776 45 35677889999999987764          4566666 67899999999876 5778899999999999


Q ss_pred             CCcchhHHHHhcCchHHHHHHhccCc-----hhHHHHHHHHHHcCCcHHH---HHHcCchHHHHHHHh--cCChHHHHHH
Q 048793          532 GDRETVGRLVERGIVEIVAEAMDVLP-----EESVTILEAVVKRGGLTAI---VAAYNTIKKLCILLR--EGSDTSRESA  601 (683)
Q Consensus       532 ~~~~n~~~iv~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~~~~e~---~~~~g~v~~Lv~lL~--~~s~~~ke~A  601 (683)
                      ..++-+..++++|++..|+.++.+..     +.+..++..|..++|+...   +...|+.+.++.++.  ..+|.+-+.+
T Consensus       271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  271 VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            99999999999999999999998632     2377899999999987655   455599999999875  3678889999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHH-HHHhhcC-CHHHHHHHHHHHHHHHhhhc
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVI-WELMESG-TARARRKAAALLRILRRWAA  657 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L-~~Ll~~~-~~~~k~kA~~lL~~l~~~~~  657 (683)
                      +.++.-||-..++.. +. +.+.|+-... ..|-.++ ...++++|++++|++-....
T Consensus       351 ~a~i~~l~LR~pdhs-a~-~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~  406 (461)
T KOG4199|consen  351 MAIISILCLRSPDHS-AK-AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA  406 (461)
T ss_pred             HHHHHHHHhcCcchH-HH-HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999888743 34 4455555444 4555555 56799999999999976443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.45  E-value=4.2e-12  Score=129.76  Aligned_cols=190  Identities=17%  Similarity=0.205  Sum_probs=165.9

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      +....|+.+|+...|+..+..|+.++.+.+... .++..|.+.|+++.+..+|..+    ++.+++.|+.+|.|++.+.+
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p----~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDP----NPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCC----ChHHHHHHHHHHHhcCCChh
Confidence            456789999987658999999999999987755 6999999999999999999999    99999999999999999999


Q ss_pred             hHHHHhcccCcHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRSG-ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~-~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      |+..|-   ..++.+.+.+.+. .+.+.+..+.++|.+|+..++++..+.   +.++.++.+|..|+...+..++++|.|
T Consensus        87 n~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   87 NQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            988773   2577777766543 356888999999999999998888874   479999999999999999999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccC--chhHHHHHHHHHHcC
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVL--PEESVTILEAVVKRG  571 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~  571 (683)
                      ||.++.+...++.++++..++.++...  .+....++..+.++.
T Consensus       161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~  204 (254)
T PF04826_consen  161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENIN  204 (254)
T ss_pred             hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999999999999999999999999753  455777888877764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.38  E-value=3.4e-11  Score=135.30  Aligned_cols=280  Identities=17%  Similarity=0.104  Sum_probs=206.5

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      .-+.|+.||.+|.+. +.+++..|+++|+||...+..  |+..|.+.|+||.|+.+|+...   |.++++.+..+|+||+
T Consensus       273 qlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~---D~ev~e~iTg~LWNLS  348 (717)
T KOG1048|consen  273 QLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ---DDEVRELITGILWNLS  348 (717)
T ss_pred             HhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc---chHHHHHHHHHHhccc
Confidence            357899999999999 999999999999999987765  9999999999999999999742   8999999999999999


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCC-------------CHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhh
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGA-------------TWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLV  512 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~-------------~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL  512 (683)
                      .+|.-|..|+..  ++..|..-+-...             +.++..+++.+|.|++. ..+.+.++.+..|.|.+|+..+
T Consensus       349 S~D~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i  426 (717)
T KOG1048|consen  349 SNDALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI  426 (717)
T ss_pred             chhHHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence            998888888765  6777766553211             14566899999999987 6778999998889999998887


Q ss_pred             cC------CChhHHHHHHHHHHHhcCCcc---------------------------------------------------
Q 048793          513 KG------GPTSSKRDALVAILNLAGDRE---------------------------------------------------  535 (683)
Q Consensus       513 ~~------~~~~~~~~A~~aL~nLs~~~~---------------------------------------------------  535 (683)
                      .+      -+....++++.+|.||+-.-+                                                   
T Consensus       427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~  506 (717)
T KOG1048|consen  427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT  506 (717)
T ss_pred             HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence            52      234456777777777753211                                                   


Q ss_pred             --------------------------------------------------hhHHH-HhcCchHHHHHHhccC-chhHHHH
Q 048793          536 --------------------------------------------------TVGRL-VERGIVEIVAEAMDVL-PEESVTI  563 (683)
Q Consensus       536 --------------------------------------------------n~~~i-v~aG~V~~Lv~lL~~~-~~~~~~a  563 (683)
                                                                        -+..+ .+.-+.++|+++|..+ ...+..+
T Consensus       507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~  586 (717)
T KOG1048|consen  507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSA  586 (717)
T ss_pred             CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHH
Confidence                                                              01112 2334556677777643 4446667


Q ss_pred             HHHHHHcCCcHHHHHHcC--chHHHHHHHhcC------ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh
Q 048793          564 LEAVVKRGGLTAIVAAYN--TIKKLCILLREG------SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME  635 (683)
Q Consensus       564 L~~L~~l~~~~e~~~~~g--~v~~Lv~lL~~~------s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~  635 (683)
                      .++|.|++.+......+|  +++.|++.|..+      +..+-..++.+|+++...+.. .... +.+.+.++.|+.|..
T Consensus       587 a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~-nAkd-l~~~~g~~kL~~I~~  664 (717)
T KOG1048|consen  587 AGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVL-NAKD-LLEIKGIPKLRLISK  664 (717)
T ss_pred             HHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHH-HHHH-HHhccChHHHHHHhc
Confidence            777777776665555553  578888887643      246667788888888865432 2333 556677777887766


Q ss_pred             cC-CHHHHHHHHHHHHHHHhhh
Q 048793          636 SG-TARARRKAAALLRILRRWA  656 (683)
Q Consensus       636 ~~-~~~~k~kA~~lL~~l~~~~  656 (683)
                      +. ++++-+.|+.+|..|-.+.
T Consensus       665 s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  665 SQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHH
Confidence            65 6799999999998886644

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.31  E-value=2e-10  Score=117.57  Aligned_cols=224  Identities=12%  Similarity=0.112  Sum_probs=175.9

Q ss_pred             HHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793          411 AEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG  490 (683)
Q Consensus       411 ~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~  490 (683)
                      .+++-+..|+.+|+..   .|+.+++.|+.++.|.+..+.++..|.+. |+++.+..+|.++ ++.+++.|..+|.|++.
T Consensus         9 l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~   83 (254)
T PF04826_consen    9 LEAQELQKLLCLLEST---EDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDP-NPSVREKALNALNNLSV   83 (254)
T ss_pred             cCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCC-ChHHHHHHHHHHHhcCC
Confidence            5677889999999965   28999999999999999999999999998 9999999999998 79999999999999999


Q ss_pred             CcchhhHHhhhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHH
Q 048793          491 VHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAV  567 (683)
Q Consensus       491 ~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L  567 (683)
                      ..+|+..|-.   .|+.+.+...+.  +..++..++.+|.||+..++.+..+.  +.++.++.+|..+. .....++.+|
T Consensus        84 ~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L  158 (254)
T PF04826_consen   84 NDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL  158 (254)
T ss_pred             ChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence            9999998843   577777765544  46788899999999999888777764  47999999998764 4478999999


Q ss_pred             HHcCCcHHHHHHc---CchHHHHHHHhcC-ChHHHHHHHHHHHHHHhcCCch------------HHHHHHhcCC-cHHHH
Q 048793          568 VKRGGLTAIVAAY---NTIKKLCILLREG-SDTSRESAAATLVTICRKGGSE------------MVADIAAVPG-IERVI  630 (683)
Q Consensus       568 ~~l~~~~e~~~~~---g~v~~Lv~lL~~~-s~~~ke~A~~aL~~L~~~~~~~------------~~~~~~~~~G-~~~~L  630 (683)
                      .+++.++....+.   .+...++.++... +...-..+.....+|..+-..+            ..-.++.+.+ ..+.|
T Consensus       159 ~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  159 VNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             HHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence            9999998865554   5677888888764 6677888999999996543321            1112233333 44555


Q ss_pred             HHHhhcCCHHHHHH
Q 048793          631 WELMESGTARARRK  644 (683)
Q Consensus       631 ~~Ll~~~~~~~k~k  644 (683)
                      ..|..+.++++|+|
T Consensus       239 ~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  239 QALANHPDPEVKEQ  252 (254)
T ss_pred             HHHHcCCCHHHhhh
Confidence            56666666666665

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.27  E-value=1.9e-09  Score=121.89  Aligned_cols=276  Identities=13%  Similarity=0.136  Sum_probs=210.2

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ....+.|...|.++ ++.++.-+++.|.+++.++......+.+.+.++.++..|.++    |..+...|+.+|.+++.++
T Consensus        76 ~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~----d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen   76 PQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP----DLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC----cHHHHHHHHHHHHHHhCCc
Confidence            44567888999998 999999999999999988876677777899999999999999    9999999999999999988


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      .+...+... +.+..|..++.+. +...|..+..++.+++...+....++...|.++.++..|.+++.-++.+|+..|..
T Consensus       151 ~~~~~l~~~-~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~  228 (503)
T PF10508_consen  151 EGLEQLFDS-NLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSE  228 (503)
T ss_pred             hhHHHHhCc-chHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            888778887 7799999999886 57889999999999987766555555558999999999998777789999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccC---c-hh---HHHHHHHHHHcCC-cH-HHHHHc-CchHHHHHHHhcCChHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVL---P-EE---SVTILEAVVKRGG-LT-AIVAAY-NTIKKLCILLREGSDTSRE  599 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~---~-~~---~~~aL~~L~~l~~-~~-e~~~~~-g~v~~Lv~lL~~~s~~~ke  599 (683)
                      |+..+.+...+.+.|+++.|+.++.+.   + -.   .-..+....+++. .+ ...... ..+..+..++.+.++..+.
T Consensus       229 La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~  308 (503)
T PF10508_consen  229 LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIRE  308 (503)
T ss_pred             HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence            999999999999999999999999742   2 11   1112222233332 22 222211 1233444455678889999


Q ss_pred             HHHHHHHHHHhcCCchHHHHH-HhcCCc----HHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          600 SAAATLVTICRKGGSEMVADI-AAVPGI----ERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~-~~~~G~----~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .|..+|..+|+.....  ..+ ....+.    +........+++..+|-++-..|..+-.
T Consensus       309 ~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  309 VAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            9999999999754322  222 233334    3444455667888888888888877743

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.16  E-value=4.3e-10  Score=101.21  Aligned_cols=117  Identities=23%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048793          409 CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS  487 (683)
Q Consensus       409 ~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~  487 (683)
                      .+++.|+++.|+.+|.++    +..+++.++.+|.+++.+ ++.+..+... |+++.++.+|.++ ++.++..|+++|.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~-~~~v~~~a~~~L~~   75 (120)
T cd00020           2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSE-DEEVVKAALWALRN   75 (120)
T ss_pred             hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            356889999999999998    899999999999999987 6778888887 9999999999987 79999999999999


Q ss_pred             hhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          488 LSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       488 Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      |+.... .+..+.. .|+++.|++++.+++...++.|+++|.||+.
T Consensus        76 l~~~~~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          76 LAAGPEDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HccCcHHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            998875 4555555 8999999999999889999999999999973

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.4e-09  Score=111.39  Aligned_cols=257  Identities=17%  Similarity=0.196  Sum_probs=185.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .+..|.-||+.|..+ +.+...-...-|..|+...+ |+..+.+.|.|..|+++....    +++++...+..|+|||.+
T Consensus       302 rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~e-NK~~M~~~~iveKL~klfp~~----h~dL~~~tl~LlfNlSFD  375 (791)
T KOG1222|consen  302 RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDE-NKIVMEQNGIVEKLLKLFPIQ----HPDLRKATLMLLFNLSFD  375 (791)
T ss_pred             HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhcc-chHHHHhccHHHHHHHhcCCC----CHHHHHHHHHHhhhcccc
Confidence            356788899999888 88888888889999988775 999999999999999999999    999999999999999999


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAI  527 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL  527 (683)
                      ..++.+++.. |.+|.++.+|.+.   .-+..|...|+.+|.+++.+..+.. ..+|+.|++.+-.+. .++-.+.+..-
T Consensus       376 ~glr~KMv~~-GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~c  450 (791)
T KOG1222|consen  376 SGLRPKMVNG-GLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALC  450 (791)
T ss_pred             ccccHHHhhc-cchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHH
Confidence            9999999998 9999999999754   3456799999999999999999988 799999998776554 34444444444


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhc-----------------cC---------------------c-hhHHHHHHHHH
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMD-----------------VL---------------------P-EESVTILEAVV  568 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~-----------------~~---------------------~-~~~~~aL~~L~  568 (683)
                      .|||.+..|.+.+++..++..|++.-.                 ++                     . +-..+|+++|+
T Consensus       451 iNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  451 INLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             HHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            689999888888888767776655321                 00                     0 11445555555


Q ss_pred             HcCC----cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC
Q 048793          569 KRGG----LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG  637 (683)
Q Consensus       569 ~l~~----~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~  637 (683)
                      ++.-    .....+...-+|-+-..|+.|-.. -+-...+...+.....+.....++...|+++.|++|++.+
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~e-ddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADE-DDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccc-hhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence            5442    122333344455555555543221 1122222222322222334456677789999999998875

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=2.7e-09  Score=124.61  Aligned_cols=223  Identities=12%  Similarity=0.061  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chh-HHHHhcccCcH
Q 048793          386 MEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EAN-KTRIMETEGAL  462 (683)
Q Consensus       386 ~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~-k~~I~~~~G~I  462 (683)
                      ...+++|..+|.||+..+..|+..+.. .|++..+|..|.+.    ..+++.-.+.+|.||+=. +.| |+.+-+. |-+
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~----peeL~QV~AsvLRNLSWRAD~nmKkvLrE~-GsV  439 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA----PEELLQVYASVLRNLSWRADSNMKKVLRET-GSV  439 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC----hHHHHHHHHHHHHhccccccccHHHHHHhh-hhH
Confidence            467899999999999999888887765 59999999999987    667777788899999843 445 4444455 888


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCC----ChhHHHHHHHHHHHhcCC----
Q 048793          463 NGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGG----PTSSKRDALVAILNLAGD----  533 (683)
Q Consensus       463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~----  533 (683)
                      ..|+..--...........+.+||||+.+ -+||..|....|++..||.+|.-.    .-.+.+.|-.+|.|.+.+    
T Consensus       440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~  519 (2195)
T KOG2122|consen  440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC  519 (2195)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence            88888654332456778899999999976 579999999999999999999654    235778999999998764    


Q ss_pred             cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-c---HHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH
Q 048793          534 RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-L---TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI  608 (683)
Q Consensus       534 ~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~---~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L  608 (683)
                      ..-|+.+.+.+++..|++.|.+. -..+-++++.|+|+.. +   .+.+-..|+++.|..++.+.+...-+-++.+|.||
T Consensus       520 E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNL  599 (2195)
T KOG2122|consen  520 EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNL  599 (2195)
T ss_pred             chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            44577778899999999999854 2347788888888763 2   34556669999999999999988889999999999


Q ss_pred             HhcCC
Q 048793          609 CRKGG  613 (683)
Q Consensus       609 ~~~~~  613 (683)
                      -.+-+
T Consensus       600 ln~RP  604 (2195)
T KOG2122|consen  600 LNFRP  604 (2195)
T ss_pred             hcCCc
Confidence            87654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.07  E-value=2.1e-09  Score=96.64  Aligned_cols=115  Identities=22%  Similarity=0.309  Sum_probs=104.0

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.++.|+++|.++ +...+..+++.|.+++..+++++..+.+.|++|.|+.+|.+.    ++.++..|+++|.||+.+
T Consensus         5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLAAG   79 (120)
T ss_pred             HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHccC
Confidence            457899999999998 899999999999999999888999999999999999999998    999999999999999987


Q ss_pred             ch-hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793          449 EA-NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG  490 (683)
Q Consensus       449 ~~-~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~  490 (683)
                      .. .+..+... |+++.++++|..+ +.+.++.++++|.+|+.
T Consensus        80 ~~~~~~~~~~~-g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          80 PEDNKLIVLEA-GGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             cHHHHHHHHHC-CChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            64 45556666 9999999999988 79999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=98.92  E-value=1.1e-07  Score=99.19  Aligned_cols=221  Identities=11%  Similarity=0.040  Sum_probs=155.2

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHh-hCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARH-LGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~l-L~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      +.+.+..++.+. ++..|..|++.|..+..... .     ..-++|.|..+ +...    ++.++..|+.+|.++.....
T Consensus        55 ~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~----d~~VR~~A~~aLG~~~~~~~  123 (280)
T PRK09687         55 VFRLAIELCSSK-NPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDK----SACVRASAINATGHRCKKNP  123 (280)
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCC----CHHHHHHHHHHHhccccccc
Confidence            445566777777 88888888888888743221 1     22467778776 5566    88899999999988854322


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      ..    . +.+++.+...+.+. +..+|..++.+|..+          +. ..+++.|+.+|.+.++.++..|+.+|.++
T Consensus       124 ~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        124 LY----S-PKIVEQSQITAFDK-STNVRFAVAFALSVI----------ND-EAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             cc----c-hHHHHHHHHHhhCC-CHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence            11    1 13456666777766 688998888888543          33 56899999999988889999999999988


Q ss_pred             cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      ....        ..+++.|+.+|.+. .++...|+..|..+.. .      .+++.|++.|..+.  .+..|+.+|..+.
T Consensus       187 ~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~------~av~~Li~~L~~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        187 KYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-K------RVLSVLIKELKKGT--VGDLIIEAAGELG  249 (280)
T ss_pred             CCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-h------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence            3322        25677889999764 4557777777766432 1      35888999988765  4445666654443


Q ss_pred             hcCCchHHHHHHhcCCcHHHHHHHhh-cCCHHHHHHHHHHHH
Q 048793          610 RKGGSEMVADIAAVPGIERVIWELME-SGTARARRKAAALLR  650 (683)
Q Consensus       610 ~~~~~~~~~~~~~~~G~~~~L~~Ll~-~~~~~~k~kA~~lL~  650 (683)
                      .             .-+++.|..++. +++.+++++|.+.|+
T Consensus       250 ~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        250 D-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             C-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            3             134788888886 789999999998875

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.92  E-value=6.4e-10  Score=106.61  Aligned_cols=61  Identities=26%  Similarity=0.514  Sum_probs=53.1

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc---------------CCCCCCCCCCccCCCCCcchHH
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES---------------GHNTCPKTGQTLAHTNLVTNTA  331 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~---------------g~~~cP~~~~~l~~~~l~pn~~  331 (683)
                      ....++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+.++....++|.+.
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            456688999999999999999999999999999999852               2358999999999888888753

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.89  E-value=9.8e-10  Score=79.97  Aligned_cols=39  Identities=28%  Similarity=0.721  Sum_probs=31.0

Q ss_pred             ccccccCCCCceecCCccccchhhHHHHHhcCC---CCCCCC
Q 048793          279 CPISLELMRNPVVVATGQTYDRQSISLWIESGH---NTCPKT  317 (683)
Q Consensus       279 CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~---~~cP~~  317 (683)
                      |||++++|+|||+++|||+|+++||++|++...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999997532   468875

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.84  E-value=3e-09  Score=114.11  Aligned_cols=69  Identities=16%  Similarity=0.343  Sum_probs=62.5

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCR  341 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  341 (683)
                      .+...|+||||++++.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..|.++++.|..
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            46678999999999999999999999999999999976 4589999999888889999999999998853

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.81  E-value=7.1e-07  Score=101.11  Aligned_cols=272  Identities=16%  Similarity=0.181  Sum_probs=202.8

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRI  455 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I  455 (683)
                      +...|... +.+....++..|..+-.... -...  ..+..+.|...|.++    ++.++..++..|.++..+.+....+
T Consensus        43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~----~~~Vr~l~l~~l~~~~~~~~~~~~~  114 (503)
T PF10508_consen   43 LFDCLNTS-NREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHP----SPKVRRLALKQLGRIARHSEGAAQL  114 (503)
T ss_pred             HHHHHhhc-ChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            77778877 77777888888888776543 2222  467889999999998    9999999999999999887776665


Q ss_pred             hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc
Q 048793          456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE  535 (683)
Q Consensus       456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  535 (683)
                      +...+.++.++..|..+ +.++...|+.+|.+|+....+...+.. .+.+..|..++...+..++-.+..++.+++...+
T Consensus       115 ~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~  192 (503)
T PF10508_consen  115 LVDNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP  192 (503)
T ss_pred             hcCccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence            55459999999999988 799999999999999999888877777 6789999999988777788889999999987655


Q ss_pred             -hhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCCcHHHH---HHcCchHHHHHHHhcCChHHHHH------HHHH
Q 048793          536 -TVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGGLTAIV---AAYNTIKKLCILLREGSDTSRES------AAAT  604 (683)
Q Consensus       536 -n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~~~e~~---~~~g~v~~Lv~lL~~~s~~~ke~------A~~a  604 (683)
                       ....+.+.|.++.++..|.++.- ....++.+|..++..+.+.   ...|.++.|..++...+...+-.      ....
T Consensus       193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence             55666778999999999986332 2778888888887766654   44588999999987532211111      1233


Q ss_pred             HHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhcccc
Q 048793          605 LVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAAGLD  660 (683)
Q Consensus       605 L~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~~~~  660 (683)
                      ..+++..++.... ..  -..++..|..+..++++..+.-|-..+..+....+|..
T Consensus       273 ~g~la~~~~~~v~-~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~  325 (503)
T PF10508_consen  273 FGNLARVSPQEVL-EL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQ  325 (503)
T ss_pred             HHHHHhcChHHHH-HH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHH
Confidence            3445554332221 11  13456667777888888888888888888877655543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.80  E-value=5.5e-07  Score=94.87  Aligned_cols=264  Identities=13%  Similarity=0.103  Sum_probs=184.5

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCC---hhhHHHHHHHHHhccc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRL---PNLQVNAVTTILNLSI  447 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d---~~~qe~A~~aL~nLs~  447 (683)
                      +.++.|++...|+ +.++-.+..++|.++|.++.++|..+.+.|+-..++++|+..+..++   .+...-+...|.|...
T Consensus        87 ~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            4677788888888 88999999999999999999999999999998888888886532223   2445566778888876


Q ss_pred             C-chhHHHHhcccCcHHHHHHHHhcCC-CH--------------------------------------------HHHHHH
Q 048793          448 L-EANKTRIMETEGALNGVIEVLRSGA-TW--------------------------------------------EAKGNA  481 (683)
Q Consensus       448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~-~~--------------------------------------------~~~~~A  481 (683)
                      + ++.+.++++. |+++.|+.++.=+. +.                                            ..++..
T Consensus       166 ~~~~l~aq~~~~-gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~  244 (604)
T KOG4500|consen  166 DSRELRAQVADA-GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI  244 (604)
T ss_pred             CcHHHHHHHHhc-ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence            5 5668888888 99997775553211 11                                            122222


Q ss_pred             HHHHHHhhcCcchhhHHhhhcc--------------------------------------------------cHHHHHHh
Q 048793          482 AATIFSLSGVHAHRKTLGRKTR--------------------------------------------------VVKGLMDL  511 (683)
Q Consensus       482 a~~L~~Ls~~~~~~~~i~~~~G--------------------------------------------------~i~~Lv~l  511 (683)
                      ..+|...+.++..+..+++ .|                                                  .+..++..
T Consensus       245 feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence            3333333333333333333 33                                                  34444455


Q ss_pred             hcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC------chhHHHHHHHHHHcC---CcHHHHHHcCc
Q 048793          512 VKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL------PEESVTILEAVVKRG---GLTAIVAAYNT  582 (683)
Q Consensus       512 L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~------~~~~~~aL~~L~~l~---~~~e~~~~~g~  582 (683)
                      +.+.+......+.-+|.|++..+.++..+++.|.+..|+++|..+      -+..-.++++|.++.   .+.......|.
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv  403 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV  403 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence            555566667788899999999999999999999999999998631      123666788887765   34455555688


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC
Q 048793          583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT  638 (683)
Q Consensus       583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~  638 (683)
                      ++++...++..+|.++..-.+.|..+-. +.+....++.+....+..|+.-.++.+
T Consensus       404 teaIL~~lk~~~ppv~fkllgTlrM~~d-~qe~~a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  404 TEAILLQLKLASPPVTFKLLGTLRMIRD-SQEYIACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHh-chHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence            8999999999999999888888766544 333355666666666666776666654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.7e-06  Score=89.67  Aligned_cols=282  Identities=16%  Similarity=0.138  Sum_probs=194.6

Q ss_pred             chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHH
Q 048793          361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVT  440 (683)
Q Consensus       361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~  440 (683)
                      +++..++ .-+.|+.|+++.... .++.+...+.-+.+++.++. +|..++..|.+|.|+.+|.+.    .  -...|+.
T Consensus       336 eNK~~M~-~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d----~--~~~iA~~  406 (791)
T KOG1222|consen  336 ENKIVME-QNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSD----T--KHGIALN  406 (791)
T ss_pred             cchHHHH-hccHHHHHHHhcCCC-CHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCc----c--cchhhhh
Confidence            3444455 467899999999888 89999999999999998775 999999999999999999987    2  2345888


Q ss_pred             HHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-----------------
Q 048793          441 TILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR-----------------  503 (683)
Q Consensus       441 aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G-----------------  503 (683)
                      .|..+|.+++.|....-. .+|+.+.+.+-++.+.++-....+.-.|||....|...+++..|                 
T Consensus       407 ~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLm  485 (791)
T KOG1222|consen  407 MLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLM  485 (791)
T ss_pred             hhhhhccCcHHHHHHHHH-HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHH
Confidence            999999999999988887 89999999877664444444444444588877766666555222                 


Q ss_pred             -------------------cHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccCchh---
Q 048793          504 -------------------VVKGLMDLVKGGPT-SSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVLPEE---  559 (683)
Q Consensus       504 -------------------~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~~~~---  559 (683)
                                         -|.-|...+++.+. ...-.++.+|.||...+-.-..+++ ...||.+-..|.++...   
T Consensus       486 K~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddL  565 (791)
T KOG1222|consen  486 KVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDL  565 (791)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence                               23333444444332 3445688888888887666666654 68899998888765333   


Q ss_pred             HHHHHHHHHHcCCc---HHHHHHcCchHHHHHHHhcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHh
Q 048793          560 SVTILEAVVKRGGL---TAIVAAYNTIKKLCILLREG--SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM  634 (683)
Q Consensus       560 ~~~aL~~L~~l~~~---~e~~~~~g~v~~Lv~lL~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll  634 (683)
                      +...+-.+...+..   .......+.+++|+.+|+..  +++..-.-.-+...+..|.  ...+-++++...-..|+.|.
T Consensus       566 vL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  566 VLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLM  643 (791)
T ss_pred             hhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHH
Confidence            33333323222221   11223346799999999753  4444444555566666652  23345566677788899999


Q ss_pred             hcCCHHHHHHHHHHHHHHHh
Q 048793          635 ESGTARARRKAAALLRILRR  654 (683)
Q Consensus       635 ~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ++.+..+|+-.-..|-.+..
T Consensus       644 HDkN~eiRkVCDn~LdIiae  663 (791)
T KOG1222|consen  644 HDKNAEIRKVCDNALDIIAE  663 (791)
T ss_pred             hcccHHHHHHHHHHHHHHHH
Confidence            99999988877777766654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.74  E-value=9.5e-07  Score=93.14  Aligned_cols=277  Identities=11%  Similarity=0.082  Sum_probs=194.5

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCC-CCCC---CChhhHHHHHHHHHhcccCch
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGP-DTAS---RLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~---~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++++|.+...++. ...+.++..-+.+++..+-.+++.|.+..++.+++. ....   ++...-..++....-|..+++
T Consensus       227 ~l~~ll~~~v~~d~-~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe  305 (604)
T KOG4500|consen  227 MLLQLLPSMVREDI-DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE  305 (604)
T ss_pred             HHHHHHHHhhccch-hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence            36666765523333 344444444444566688899999999999999986 2100   112233344444444556677


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-----CChhHHHHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-----GPTSSKRDALV  525 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-----~~~~~~~~A~~  525 (683)
                      .-..+...|.++..++..+.+. +......++-+|.|++..|+++..++. .|.+..|+.+|..     |+.+.+..++.
T Consensus       306 SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ls  383 (604)
T KOG4500|consen  306 SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLS  383 (604)
T ss_pred             HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence            7666766634899999999988 688899999999999999999999999 8999999999843     45678899999


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCCcHH-HHHHcCchHHHHHHHhc----CC-hHHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGGLTA-IVAAYNTIKKLCILLRE----GS-DTSR  598 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~~~e-~~~~~g~v~~Lv~lL~~----~s-~~~k  598 (683)
                      ||.||...-.|+..++.+|++++++..+.. .+..+-.-++.|..+-...+ ...+.+.-+.++.-|..    .+ ..+.
T Consensus       384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~  463 (604)
T KOG4500|consen  384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVA  463 (604)
T ss_pred             HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhh
Confidence            999999999999999999999999998874 46678888888876554444 44555665666665542    11 1234


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      -...+.|..+-+|+....+...+-..|+++.++.+.....-..+..|.-.|-.+..
T Consensus       464 gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  464 GESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             hhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            45566777777775544344445567778888888777766666666555555444

>PRK09687 putative lyase; Provisional

Probab=98.72  E-value=1.2e-06  Score=91.48  Aligned_cols=228  Identities=9%  Similarity=0.007  Sum_probs=163.9

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +-.++.|...|.+. +..++..|++.|..+-.           ..+++.+..++.+.    ++.++..|+++|..|-..+
T Consensus        22 ~~~~~~L~~~L~d~-d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~----d~~vR~~A~~aLg~lg~~~   85 (280)
T PRK09687         22 KLNDDELFRLLDDH-NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSK----NPIERDIGADILSQLGMAK   85 (280)
T ss_pred             hccHHHHHHHHhCC-CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCc
Confidence            44577899999988 99999999999987632           34677888999998    9999999999999985432


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ..     .. -+++.|..++.+..++.+|..|+.+|.++.......    . ..+++.|...+.+++..++..|+.+|..
T Consensus        86 ~~-----~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~  154 (280)
T PRK09687         86 RC-----QD-NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDKSTNVRFAVAFALSV  154 (280)
T ss_pred             cc-----hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCCCHHHHHHHHHHHhc
Confidence            21     11 467888877554447999999999999986433211    1 2356778888888899999999999965


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI  608 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L  608 (683)
                      +.          ...+++.|+.+|.+. ..+...|+..|..+.....     ..++.|+.++...+..++..|+++|..+
T Consensus       155 ~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-----~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        155 IN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-----DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             cC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence            53          233789999999864 4556677777766532111     3467899999989999999999987553


Q ss_pred             HhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          609 CRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       609 ~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      -.             ..+++.|+..+.++.  ++..|...|..+..
T Consensus       220 ~~-------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        220 KD-------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             CC-------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence            21             134677777777766  34455555554433

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.70  E-value=5e-09  Score=81.36  Aligned_cols=44  Identities=32%  Similarity=0.826  Sum_probs=31.7

Q ss_pred             CcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCC
Q 048793          275 ADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTG  318 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~  318 (683)
                      -.++||||++.|+|||.. .|||+|+|.+|.+|+.. +...||+.|
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            468999999999999975 99999999999999954 456799965

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.68  E-value=7.1e-06  Score=89.61  Aligned_cols=269  Identities=13%  Similarity=0.081  Sum_probs=188.8

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR  454 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~  454 (683)
                      .++.+|.++ |.-.+..|...|..+...+..+.......-....|...|.+.   .+...+.-|+.+|.+|...++.|..
T Consensus       105 ~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~~~~~v~~L~~LL~~~~~R~~  180 (429)
T cd00256         105 PFFNLLNRQ-DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNI---TNNDYVQTAARCLQMLLRVDEYRFA  180 (429)
T ss_pred             HHHHHHcCC-chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhcc---CCcchHHHHHHHHHHHhCCchHHHH
Confidence            355678777 888999999999988766543322111112334555666654   1467788889999999999999998


Q ss_pred             HhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcC
Q 048793          455 IMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAG  532 (683)
Q Consensus       455 I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~  532 (683)
                      +.+. ++++.|+.+|+... +.+..-.++-+++-||..++....... .|.|+.|+++++... ..+.+-++.+|.||..
T Consensus       181 f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         181 FVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            9887 78999999998743 568889999999999999887777665 899999999998754 5588999999999987


Q ss_pred             Cc-------chhHHHHhcCchHHHHHHhcc---CchhHHHHHHHHH--------HcCCcHH-------------------
Q 048793          533 DR-------ETVGRLVERGIVEIVAEAMDV---LPEESVTILEAVV--------KRGGLTA-------------------  575 (683)
Q Consensus       533 ~~-------~n~~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~--------~l~~~~e-------------------  575 (683)
                      .+       .....|++.|+.+.+-.+...   +++. ...+..|.        .+++-.+                   
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se  337 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE  337 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence            43       234567778876655444432   2222 11111111        1221111                   


Q ss_pred             -----HHHHc-----CchHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 048793          576 -----IVAAY-----NTIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRK  644 (683)
Q Consensus       576 -----~~~~~-----g~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k  644 (683)
                           .....     ..+..|+++|. +.++.+..-|+.=+..++++.+.  .+.++...|+=..+..|+.+.++++|..
T Consensus       338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~vM~Lm~h~d~~Vr~e  415 (429)
T cd00256         338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRVMRLLNHEDPNVRYE  415 (429)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence                 11111     12456777774 34666777788878888887764  3556777899999999999999999999


Q ss_pred             HHHHHHHH
Q 048793          645 AAALLRIL  652 (683)
Q Consensus       645 A~~lL~~l  652 (683)
                      |-..++.|
T Consensus       416 AL~avQkl  423 (429)
T cd00256         416 ALLAVQKL  423 (429)
T ss_pred             HHHHHHHH
Confidence            98888765

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=1.7e-05  Score=89.35  Aligned_cols=278  Identities=16%  Similarity=0.180  Sum_probs=202.1

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ..+|+.|+..+.++.-.+.|+.|+..|..+++   .+|..++..| +++|+..|....  .|+++...++.+++++..++
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~--~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDY--MDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhcc--CCHHHHHHHHHHHHHHHhcC
Confidence            45789999999876457899999999999987   4788777654 688999998652  38999999999999997665


Q ss_pred             h-------hH----------HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHH
Q 048793          450 A-------NK----------TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMD  510 (683)
Q Consensus       450 ~-------~k----------~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~  510 (683)
                      +       .+          ..+...++.|..++..+..- +-.+|..+...|.+|-...  +.+..+...+-+|..||.
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            3       22          23445568899999999887 7899999999999987654  466666666889999999


Q ss_pred             hhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccCc-----hhHHHHHHHHHH----cCCcHHHHHHc
Q 048793          511 LVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVLP-----EESVTILEAVVK----RGGLTAIVAAY  580 (683)
Q Consensus       511 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~----l~~~~e~~~~~  580 (683)
                      +|.+....++-+|+-.|..|..+..+.+++|. .++...|..++.++.     -+++.||..|.+    ..++.....+-
T Consensus       174 lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  174 LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            99987778999999999999999999988877 689999999997432     348888888866    34566677777


Q ss_pred             CchHHHHHHHhc---CCh----H--HH----HHHHHHHHHHHhcCCc----hHHHHHHhcCCcHHHHHHHhhcC--CHHH
Q 048793          581 NTIKKLCILLRE---GSD----T--SR----ESAAATLVTICRKGGS----EMVADIAAVPGIERVIWELMESG--TARA  641 (683)
Q Consensus       581 g~v~~Lv~lL~~---~s~----~--~k----e~A~~aL~~L~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~--~~~~  641 (683)
                      +-+|.|.++|..   ++.    .  -|    -.|..++..+..-+..    ...+.++...+++..|..++.+.  ..++
T Consensus       254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI  333 (970)
T KOG0946|consen  254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI  333 (970)
T ss_pred             ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence            889999988752   221    1  11    1233333333332221    23335677778888887765554  4456


Q ss_pred             HHHHHHHHHHHHh
Q 048793          642 RRKAAALLRILRR  654 (683)
Q Consensus       642 k~kA~~lL~~l~~  654 (683)
                      +..+.-.+...-+
T Consensus       334 ltesiitvAevVR  346 (970)
T KOG0946|consen  334 LTESIITVAEVVR  346 (970)
T ss_pred             HHHHHHHHHHHHH
Confidence            6555554444433

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.54  E-value=5.1e-08  Score=69.97  Aligned_cols=38  Identities=34%  Similarity=0.848  Sum_probs=33.3

Q ss_pred             ccccccCCCCc-eecCCccccchhhHHHHHhcCCCCCCCC
Q 048793          279 CPISLELMRNP-VVVATGQTYDRQSISLWIESGHNTCPKT  317 (683)
Q Consensus       279 CPis~~~m~dP-v~~~~g~ty~r~~I~~w~~~g~~~cP~~  317 (683)
                      |||+++.++|| ++++|||+|++.+|++|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 6799975

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.52  E-value=1.5e-06  Score=92.58  Aligned_cols=178  Identities=17%  Similarity=0.171  Sum_probs=138.0

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      ...+++.+.++ |...+..|+..|..+...++...... ..+.++.++..|.+...+.+.+.+..|+.+|.+|...+.+|
T Consensus       107 ~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R  184 (312)
T PF03224_consen  107 YSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR  184 (312)
T ss_dssp             HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence            45577788888 99999999999999988776433332 25677888888776422225677899999999999999999


Q ss_pred             HHHhcccCcHHHHHHHH------hcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHH
Q 048793          453 TRIMETEGALNGVIEVL------RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALV  525 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL------~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~  525 (683)
                      ..+.+. |+++.++.+|      .++.+.+..-+++-++|-||..++....+.. .+.|+.|+++++... ..+.+-++.
T Consensus       185 ~~f~~~-~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la  262 (312)
T PF03224_consen  185 QVFWKS-NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLA  262 (312)
T ss_dssp             HHHHTH-HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred             HHHHhc-CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHH
Confidence            999997 9999999999      4444588889999999999999999999988 789999999998754 568899999


Q ss_pred             HHHHhcCCcc--hhHHHHhcCchHHHHHHhc
Q 048793          526 AILNLAGDRE--TVGRLVERGIVEIVAEAMD  554 (683)
Q Consensus       526 aL~nLs~~~~--n~~~iv~aG~V~~Lv~lL~  554 (683)
                      +|.||.....  +...|+.+|+.+.+-.+..
T Consensus       263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999998776  8999999998887777665

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.51  E-value=1.4e-05  Score=97.04  Aligned_cols=228  Identities=15%  Similarity=0.072  Sum_probs=132.9

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ...++.|+..|.+. ++.+|..|+..|..+.           ..+++|.|+.+|+++    +..++..|+.+|..+....
T Consensus       620 ~~~~~~L~~~L~D~-d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~----d~~VR~~Aa~aL~~l~~~~  683 (897)
T PRK13800        620 APSVAELAPYLADP-DPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG----AAAVRRAAAEGLRELVEVL  683 (897)
T ss_pred             chhHHHHHHHhcCC-CHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhcc
Confidence            44678899999988 9999999999987653           245788899999888    8899999988887663110


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-----------c--hh----hHHhhhcccHHHHHHhh
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-----------A--HR----KTLGRKTRVVKGLMDLV  512 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-----------~--~~----~~i~~~~G~i~~Lv~lL  512 (683)
                                ...+.|...|.+. ++.+|..|+.+|..+...+           +  .|    ..++. .+..+.|..++
T Consensus       684 ----------~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l  751 (897)
T PRK13800        684 ----------PPAPALRDHLGSP-DPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAA  751 (897)
T ss_pred             ----------CchHHHHHHhcCC-CHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHh
Confidence                      1123445555554 4566666655555442100           0  00    00000 11123344444


Q ss_pred             cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh
Q 048793          513 KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR  591 (683)
Q Consensus       513 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~  591 (683)
                      .++++.++..++.+|..+...        +.+.++.|..++.+. +.....|+..|..+......      +..+...|.
T Consensus       752 ~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~------~~~l~~aL~  817 (897)
T PRK13800        752 TDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDD------VAAATAALR  817 (897)
T ss_pred             cCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchh------HHHHHHHhc
Confidence            444444555555555444321        112356777777643 34466666666665432211      234556666


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793          592 EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL  652 (683)
Q Consensus       592 ~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l  652 (683)
                      ..++.+|..|+.+|..+..             ...++.|..++.+.+..+|+.|...|..+
T Consensus       818 d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        818 ASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             CCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            6677777777777654422             12246677777777777777777777665

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.48  E-value=4.8e-06  Score=88.75  Aligned_cols=213  Identities=15%  Similarity=0.122  Sum_probs=148.9

Q ss_pred             HHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHh------CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793          373 ASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEA------GAIALLARHLGPDTASRLPNLQVNAVTTILNL  445 (683)
Q Consensus       373 i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~------G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL  445 (683)
                      +..++.+|+.- .+.+.....+..+..+..+++.....+...      ....++++++.++    |..++..|+.+|..|
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~----D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN----DSFIQLKAAFILTSL  132 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence            33444544432 378999999999999999888666666652      2577888899988    999999999999998


Q ss_pred             ccCchhHHHHhcccCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh-----cCC--
Q 048793          446 SILEANKTRIMETEGALNGVIEVLRSGA---TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV-----KGG--  515 (683)
Q Consensus       446 s~~~~~k~~I~~~~G~I~~Lv~lL~~~~---~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL-----~~~--  515 (683)
                      ......+..-... +.++.++..|++..   +.+....|+.+|.+|...+++|..+.+ .|+++.|+.+|     .++  
T Consensus       133 l~~~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~  210 (312)
T PF03224_consen  133 LSQGPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSS  210 (312)
T ss_dssp             HTSTTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------
T ss_pred             HHcCCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCC
Confidence            7664443333223 67888999988532   245568899999999999999999999 89999999999     222  


Q ss_pred             ChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chh-HHHHHHHHHHcCCcHH--HHHH--cCchHHHHHH
Q 048793          516 PTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEE-SVTILEAVVKRGGLTA--IVAA--YNTIKKLCIL  589 (683)
Q Consensus       516 ~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~-~~~aL~~L~~l~~~~e--~~~~--~g~v~~Lv~l  589 (683)
                      +.+..-.++-++|-|+.+++....+.+.+.|+.|++++... .+. +.-++++|.|+.....  ....  .+++..++..
T Consensus       211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~  290 (312)
T PF03224_consen  211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN  290 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred             chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence            25677999999999999999999999999999999999854 343 6668999988764432  2222  1345555555


Q ss_pred             Hh
Q 048793          590 LR  591 (683)
Q Consensus       590 L~  591 (683)
                      |.
T Consensus       291 L~  292 (312)
T PF03224_consen  291 LS  292 (312)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.39  E-value=1.5e-07  Score=68.53  Aligned_cols=36  Identities=25%  Similarity=0.658  Sum_probs=23.3

Q ss_pred             ccccccCCCC----ceecCCccccchhhHHHHHhcC---CCCCC
Q 048793          279 CPISLELMRN----PVVVATGQTYDRQSISLWIESG---HNTCP  315 (683)
Q Consensus       279 CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g---~~~cP  315 (683)
                      ||||.+ |.+    |++++|||+|++.||++|...+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999864   34676

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.38  E-value=3.8e-05  Score=93.23  Aligned_cols=228  Identities=15%  Similarity=0.108  Sum_probs=149.8

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-  448 (683)
                      ...++.|+..|+.+ +..++..|+..|..+....+          ..+.|...|.+.    |+.++..|+.+|..+... 
T Consensus       651 ~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~----d~~VR~~A~~aL~~~~~~~  715 (897)
T PRK13800        651 PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSP----DPVVRAAALDVLRALRAGD  715 (897)
T ss_pred             hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCC----CHHHHHHHHHHHHhhccCC
Confidence            45678899999887 89999999988877643211          124555566655    666666666665544210 


Q ss_pred             ----------ch--hHH----HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh
Q 048793          449 ----------EA--NKT----RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV  512 (683)
Q Consensus       449 ----------~~--~k~----~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL  512 (683)
                                ++  .|.    .+... +..+.|...|... +.++|..++.+|..+...        . .+.++.|..++
T Consensus       716 ~~~l~~~L~D~d~~VR~~Av~aL~~~-~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll  784 (897)
T PRK13800        716 AALFAAALGDPDHRVRIEAVRALVSV-DDVESVAGAATDE-NREVRIAVAKGLATLGAG--------G-APAGDAVRALT  784 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcc-cCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc--------c-chhHHHHHHHh
Confidence                      00  010    00011 2233445555555 566666666666655332        1 33578999999


Q ss_pred             cCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh
Q 048793          513 KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR  591 (683)
Q Consensus       513 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~  591 (683)
                      +++++.++..|+.+|.++...+         .+++.|+..|.+. ..+...|+..|..+...       ..++.|+.+|.
T Consensus       785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-------~a~~~L~~~L~  848 (897)
T PRK13800        785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAAD-------VAVPALVEALT  848 (897)
T ss_pred             cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-------chHHHHHHHhc
Confidence            9999999999999998874321         1235577778754 34567788888765432       24689999999


Q ss_pred             cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          592 EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       592 ~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                      ..+..+|..|+.+|..+   .++.         ...+.|...+.+.+..+|+.|...|+.
T Consensus       849 D~~~~VR~~A~~aL~~~---~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        849 DPHLDVRKAAVLALTRW---PGDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CCCHHHHHHHHHHHhcc---CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999999999998775   1121         235667788999999999999998863

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.27  E-value=6.4e-07  Score=64.95  Aligned_cols=39  Identities=38%  Similarity=0.923  Sum_probs=35.9

Q ss_pred             ccccccCCCCce-ecCCccccchhhHHHHHh-cCCCCCCCC
Q 048793          279 CPISLELMRNPV-VVATGQTYDRQSISLWIE-SGHNTCPKT  317 (683)
Q Consensus       279 CPis~~~m~dPv-~~~~g~ty~r~~I~~w~~-~g~~~cP~~  317 (683)
                      |||+++.+.+|+ +++|||+|++.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 556789976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=4.7e-05  Score=79.75  Aligned_cols=177  Identities=19%  Similarity=0.185  Sum_probs=139.7

Q ss_pred             CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcH
Q 048793          384 QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGAL  462 (683)
Q Consensus       384 ~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I  462 (683)
                      .+.+.+..|+..|..++.+- +|..-+...|+.++|+..|.+.    +..+++.|+++|..++.+ +..+..+++. |++
T Consensus        95 ~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~-~~L  168 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIEL-GAL  168 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHc-ccH
Confidence            38899999999999998765 4889999999999999999999    999999999999999876 5678888898 999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCc-chhH
Q 048793          463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDR-ETVG  538 (683)
Q Consensus       463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~-~n~~  538 (683)
                      +.|+..|.+..+..++..|..++.+|-.+.. ....+-. .++...|.+++.++  +.+.+..++..|.+|...+ ....
T Consensus       169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999977678888999999999988765 4444445 67799999999885  4667888999999987644 3444


Q ss_pred             HHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793          539 RLVERGIVEIVAEAMDVL-PEESVTILEAV  567 (683)
Q Consensus       539 ~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L  567 (683)
                      .+-..|....++.+.... .+.-+.++..+
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTAL  277 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHH
Confidence            444566666666666532 23344444443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=5e-07  Score=88.39  Aligned_cols=57  Identities=23%  Similarity=0.525  Sum_probs=51.6

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCCCCccCCCCCcchHH
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKTGQTLAHTNLVTNTA  331 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~~~~l~pn~~  331 (683)
                      ..|.|-||++.-+|||++.|||-||=-||-+|++.  +...||+|+...+.+.++|-+.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            67999999999999999999999999999999974  4567999999999999999754

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.25  E-value=4.4e-07  Score=92.22  Aligned_cols=64  Identities=20%  Similarity=0.424  Sum_probs=58.5

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW  339 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  339 (683)
                      +-++|-||++.|.-|+++|||||||--||.+++.. ++.||.|..+.+...|+-|..|.++|+.|
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSL   85 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHH
Confidence            45799999999999999999999999999999985 78999999999999999999888888765

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.20  E-value=6.1e-07  Score=69.88  Aligned_cols=58  Identities=22%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             cccccccccCCCCcee-cCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHH
Q 048793          276 DFRCPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLI  336 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~-~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i  336 (683)
                      -++|++|.++|++||. ..|.|.||..||.+.+..   -||+|..|....++.-|..|.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            4689999999999995 599999999999876543   499999998888999999888775

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.19  E-value=1.3e-06  Score=87.87  Aligned_cols=49  Identities=20%  Similarity=0.493  Sum_probs=41.3

Q ss_pred             CCCcccccccccCCCCc--------eecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          273 VPADFRCPISLELMRNP--------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dP--------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      ...+..||||++.+.++        ++++|||+||+.||.+|+.. +.+||.||.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            34567899999987764        56799999999999999975 779999998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.18  E-value=1.3e-06  Score=66.28  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=40.8

Q ss_pred             CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      +++.|+|+++-..++++.||||. |+..|+.+|+. +...||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999999 4789999998764

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.3e-06  Score=88.01  Aligned_cols=56  Identities=21%  Similarity=0.526  Sum_probs=48.6

Q ss_pred             CCCC-CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc
Q 048793          271 ANVP-ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV  327 (683)
Q Consensus       271 ~~~p-~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~  327 (683)
                      ..+| ..+.|-||++-+.||--+||||.||=+||..|+.+ ..-||.||+++++.+++
T Consensus       233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI  289 (293)
T ss_pred             ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence            3444 56999999999999999999999999999999986 45699999998877654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.15  E-value=9.9e-05  Score=84.31  Aligned_cols=252  Identities=14%  Similarity=0.145  Sum_probs=128.7

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .+..+.+.|.++ ++..+..|++.|.+++.  +    .+++ -.+|.+..+|.++    ++.++..|+.++..+......
T Consensus        80 ~~n~l~kdl~~~-n~~~~~lAL~~l~~i~~--~----~~~~-~l~~~v~~ll~~~----~~~VRk~A~~~l~~i~~~~p~  147 (526)
T PF01602_consen   80 IINSLQKDLNSP-NPYIRGLALRTLSNIRT--P----EMAE-PLIPDVIKLLSDP----SPYVRKKAALALLKIYRKDPD  147 (526)
T ss_dssp             HHHHHHHHHCSS-SHHHHHHHHHHHHHH-S--H----HHHH-HHHHHHHHHHHSS----SHHHHHHHHHHHHHHHHHCHC
T ss_pred             HHHHHHHhhcCC-CHHHHHHHHhhhhhhcc--c----chhh-HHHHHHHHHhcCC----chHHHHHHHHHHHHHhccCHH
Confidence            455566667666 77777777777776652  1    1111 2466667777776    777777777777776533211


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHh-hcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL-SGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~L-s~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                         .+.. +.++.+..+|... ++.++.+|+.++..+ ...+.....+   ...+..|.+++...++-.+..++..|..+
T Consensus       148 ---~~~~-~~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~~~~~~~~---~~~~~~L~~~l~~~~~~~q~~il~~l~~~  219 (526)
T PF01602_consen  148 ---LVED-ELIPKLKQLLSDK-DPSVVSAALSLLSEIKCNDDSYKSLI---PKLIRILCQLLSDPDPWLQIKILRLLRRY  219 (526)
T ss_dssp             ---CHHG-GHHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTHHHHTTHH---HHHHHHHHHHHTCCSHHHHHHHHHHHTTS
T ss_pred             ---HHHH-HHHHHHhhhccCC-cchhHHHHHHHHHHHccCcchhhhhH---HHHHHHhhhcccccchHHHHHHHHHHHhc
Confidence               1121 1466666777655 577777777777777 1111112111   23455555555555555666666666666


Q ss_pred             cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      +........-  ...++.+..++.+. +...-+|+..+..+......  ....++.|.+++.+.++..+-.++..|..++
T Consensus       220 ~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~--~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  220 APMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPEL--LQKAINPLIKLLSSSDPNVRYIALDSLSQLA  295 (526)
T ss_dssp             TSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHH--HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             ccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHH--HHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence            5543322100  33445555555432 23345555555555544441  1123555666666555556666666666665


Q ss_pred             hcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          610 RKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       610 ~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ....     ..+.  .....+..+..+.+..+|.+|..+|..+..
T Consensus       296 ~~~~-----~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  296 QSNP-----PAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             CHCH-----HHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             cccc-----hhhh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            5431     1111  112222223335555566665555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=5.8e-05  Score=85.72  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=123.6

Q ss_pred             cccHHHHHHhhcCC-ChhHHHHHHHHHHHhcC-CcchhHHHHhcCchHHHHHHhcc--CchhHHHHHHHHHHcCC-cHHH
Q 048793          502 TRVVKGLMDLVKGG-PTSSKRDALVAILNLAG-DRETVGRLVERGIVEIVAEAMDV--LPEESVTILEAVVKRGG-LTAI  576 (683)
Q Consensus       502 ~G~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L~~l~~-~~e~  576 (683)
                      .-.||.||.+|++. +.++.-.|++||.+||. .++....+|+.|+||.|++-|..  .-+.++.+|.+|-.++. ++..
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A  289 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA  289 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence            56899999999876 57899999999999998 68899999999999999998863  34668889998888774 4567


Q ss_pred             HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          577 VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       577 ~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      +...|++.+.+..+.--|-.+|+.|.++-.|+|..-..+...-++   .++|+|..|++..+.+.-+.++..+..+..
T Consensus       290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            777899999999888888999999999999999865543333333   569999999999998888877776665555

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=0.00013  Score=76.52  Aligned_cols=177  Identities=13%  Similarity=0.080  Sum_probs=140.9

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLM  509 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv  509 (683)
                      +.+-++.|+.-|..+..+-+|...+... |++.+++..|+++ +.+.|+.|+++|..++.+ +.....+.+ .|+.+.|+
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~-ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~Ll  172 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISL-GGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKLL  172 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhc-cCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHHH
Confidence            7788888998888888888999999998 9999999999998 799999999999999876 457777777 89999999


Q ss_pred             HhhcCCCh-hHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC-ch--hHHHHHHHHHHcCC----cHHHHHHc
Q 048793          510 DLVKGGPT-SSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PE--ESVTILEAVVKRGG----LTAIVAAY  580 (683)
Q Consensus       510 ~lL~~~~~-~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~--~~~~aL~~L~~l~~----~~e~~~~~  580 (683)
                      .+|...++ .++..|+.|+..|-.+.. +...+...++...|...|.++ .+  ...+++..+..+..    ..+.....
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            99986654 577999999999988754 788889999999999999863 22  26667766665442    12233334


Q ss_pred             CchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          581 NTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       581 g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      +....++.+....+....++|..++..+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            555566667777888999999988877665

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00099  Score=68.33  Aligned_cols=264  Identities=15%  Similarity=0.092  Sum_probs=174.8

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      .+|.+|.+. ++.++..|+..+..++..  ..+.+... .-.++.|..++...    ++  -+.|+++|.|++.+..-++
T Consensus         7 elv~ll~~~-sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~----~~--~~~a~~alVnlsq~~~l~~   77 (353)
T KOG2973|consen    7 ELVELLHSL-SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL----DP--AEPAATALVNLSQKEELRK   77 (353)
T ss_pred             HHHHHhccC-ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc----cc--ccHHHHHHHHHHhhHHHHH
Confidence            478899988 999999999999888876  24444443 35788889998876    44  5678999999999988888


Q ss_pred             HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhc----ccHHHHHH-hhcCC-Ch-hHHHHHHH
Q 048793          454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKT----RVVKGLMD-LVKGG-PT-SSKRDALV  525 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~----G~i~~Lv~-lL~~~-~~-~~~~~A~~  525 (683)
                      .+...  .+..+++.+-+.. ...-...|-+|.||+..++....+. ...    .++.-|+. ....+ +. .-...-+-
T Consensus        78 ~ll~~--~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   78 KLLQD--LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHHH--HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            88775  8888998887763 3455678889999999876444332 111    23444443 33332 22 23367788


Q ss_pred             HHHHhcCCcchhHHHHhcCchHH--HHHHhccCch-hHHHHHHHHHHcCCcH---HHHHHcCchHHHH------------
Q 048793          526 AILNLAGDRETVGRLVERGIVEI--VAEAMDVLPE-ESVTILEAVVKRGGLT---AIVAAYNTIKKLC------------  587 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~--Lv~lL~~~~~-~~~~aL~~L~~l~~~~---e~~~~~g~v~~Lv------------  587 (683)
                      .+.||+....+|..+.+...++.  |+.+-..+.. ......++|-|.|...   +.... -.+..|.            
T Consensus       155 vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  155 VFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCcccc
Confidence            88899999888888766553221  1111111111 1444555565544221   11111 1111121            


Q ss_pred             ------------HHHh-----cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 048793          588 ------------ILLR-----EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALL  649 (683)
Q Consensus       588 ------------~lL~-----~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL  649 (683)
                                  +.+.     ..++.++..-+.+|..||...   ..++.++.-|+.+++.++-... ++++++..-.+.
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~---~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR---AGREVLRSKGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh---HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence                        2221     257788999999999999843   4577789999999999886654 778888888888


Q ss_pred             HHHHh
Q 048793          650 RILRR  654 (683)
Q Consensus       650 ~~l~~  654 (683)
                      .++-+
T Consensus       311 q~Lv~  315 (353)
T KOG2973|consen  311 QMLVR  315 (353)
T ss_pred             HHHHh
Confidence            88877

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00013  Score=83.12  Aligned_cols=175  Identities=15%  Similarity=0.162  Sum_probs=143.7

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      .+..||.|+.+|+...+.+++..|+++|..++.--+..-..+++.|+||.|+. |+.-.    -.++-|.++.+|-.++.
T Consensus       209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie----yiDvAEQ~LqALE~iSR  284 (1051)
T KOG0168|consen  209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE----YIDVAEQSLQALEKISR  284 (1051)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh----hhHHHHHHHHHHHHHHh
Confidence            35678999999988668999999999999999999988999999999999996 55555    67899999999999986


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV  525 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~  525 (683)
                      ...  +.|..+ |+|...+..|.-= +..+++.|.++..|+|..-  +.-..+   ..++|.|-.+|...+....+.++-
T Consensus       285 ~H~--~AiL~A-G~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v---~ealPlL~~lLs~~D~k~ies~~i  357 (1051)
T KOG0168|consen  285 RHP--KAILQA-GALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFV---MEALPLLTPLLSYQDKKPIESVCI  357 (1051)
T ss_pred             hcc--HHHHhc-ccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHH---HHHHHHHHHHHhhccchhHHHHHH
Confidence            432  467787 9999999998765 5789999999999999642  222233   358999999999998888888888


Q ss_pred             HHHHhcCC----cchhHHHHhcCchHHHHHHhc
Q 048793          526 AILNLAGD----RETVGRLVERGIVEIVAEAMD  554 (683)
Q Consensus       526 aL~nLs~~----~~n~~~iv~aG~V~~Lv~lL~  554 (683)
                      ++..++..    ++--.++...|.|.-..++|.
T Consensus       358 c~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls  390 (1051)
T KOG0168|consen  358 CLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS  390 (1051)
T ss_pred             HHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence            88888642    334567788999999999986

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.04  E-value=5e-05  Score=68.57  Aligned_cols=124  Identities=19%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .+.+..||.-.....+.+.++.....|.+++.+. .|-..+.+.+++...+.-|...    |..+.+.++..|+|+|.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~----ne~LvefgIgglCNlC~d~   89 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQ----NELLVEFGIGGLCNLCLDK   89 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcc----cHHHHHHhHHHHHhhccCh
Confidence            4567778887766558899999999999999865 5999999999999999999998    9999999999999999999


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhh
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGR  500 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~  500 (683)
                      .|++-|.++ ++++.++..|++. .....-.|+.+|..|+.... .+..+..
T Consensus        90 ~n~~~I~ea-~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   90 TNAKFIREA-LGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHHHHHHh-cCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            999999998 9999999999887 47777888888999987643 5555544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.00044  Score=78.99  Aligned_cols=253  Identities=13%  Similarity=0.144  Sum_probs=174.9

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc-ccCc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL-SILE  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL-s~~~  449 (683)
                      ..++.+.+.|.++ ++.+|..|+.++..+.+.+++.   +... .++.|..+|.+.    |+.++..|+.++..+ ..++
T Consensus       114 ~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~----~~~V~~~a~~~l~~i~~~~~  184 (526)
T PF01602_consen  114 PLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDK----DPSVVSAALSLLSEIKCNDD  184 (526)
T ss_dssp             HHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHS----SHHHHHHHHHHHHHHHCTHH
T ss_pred             HHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCC----cchhHHHHHHHHHHHccCcc
Confidence            3566778888888 9999999999999998876532   2223 699999999888    999999999999999 2222


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ... .+..  ..+..|..++... ++-.+.....+|..++........-   ...++.+..++.+.++.+.-.|+.++..
T Consensus       185 ~~~-~~~~--~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~  257 (526)
T PF01602_consen  185 SYK-SLIP--KLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIK  257 (526)
T ss_dssp             HHT-THHH--HHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh-hhHH--HHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            212 1221  3455566666556 6888888889998887654433311   3578888888887778888999999998


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCCcH-HHHHHcCchHHHHHHHh-cCChHHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGGLT-AIVAAYNTIKKLCILLR-EGSDTSRESAAATLV  606 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~~~-e~~~~~g~v~~Lv~lL~-~~s~~~ke~A~~aL~  606 (683)
                      +.....     .-..++++|+.+|.+... ..--++..|..++... ....   .....+..+. ..+..+|..+..+|.
T Consensus       258 l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~  329 (526)
T PF01602_consen  258 LSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF---NQSLILFFLLYDDDPSIRKKALDLLY  329 (526)
T ss_dssp             HSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG---THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred             hhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh---hhhhhhheecCCCChhHHHHHHHHHh
Confidence            877665     445678889999985433 5666777777776544 2222   2333334455 678889999999999


Q ss_pred             HHHhcCCchHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHHhhh
Q 048793          607 TICRKGGSEMVADIAAVPGIERVIWELM-ESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       607 ~L~~~~~~~~~~~~~~~~G~~~~L~~Ll-~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      .++..   ..+..      +++-|...+ ..+++..++.+...+..+....
T Consensus       330 ~l~~~---~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  330 KLANE---SNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HH--H---HHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             hcccc---cchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            99873   22232      356666666 4447778888888777776643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.01  E-value=0.0009  Score=73.39  Aligned_cols=195  Identities=11%  Similarity=0.026  Sum_probs=141.1

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-----CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-----GAIALLARHLGPDTASRLPNLQVNAVTTILNL  445 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-----G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL  445 (683)
                      ..+..++.+|+.....+.....+.-+..+..+++..-..+.+.     +...+++.+|..+    |.-++..|..+|..+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~----d~~i~~~a~~iLt~l  128 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ----DQFIVHMSFSILAKL  128 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC----chhHHHHHHHHHHHH
Confidence            4567788888765578888888888888888776444455553     4566777888887    888999999999888


Q ss_pred             ccCchhH-HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHH
Q 048793          446 SILEANK-TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRD  522 (683)
Q Consensus       446 s~~~~~k-~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~  522 (683)
                      ......+ ...... -...-|...|+++.+...+..++.+|..|...+++|..+.. .++++.|+++|+...  .+..-.
T Consensus       129 ~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~  206 (429)
T cd00256         129 ACFGLAKMEGSDLD-YYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQ  206 (429)
T ss_pred             HhcCccccchhHHH-HHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHH
Confidence            5432211 100000 12334555666553577888899999999999999999988 679999999998643  467788


Q ss_pred             HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-ch-hHHHHHHHHHHcC
Q 048793          523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PE-ESVTILEAVVKRG  571 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~-~~~~aL~~L~~l~  571 (683)
                      ++-++|-|+.+++....+.+.|.|+.|++++... .+ .+.-++++|.|+.
T Consensus       207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll  257 (429)
T cd00256         207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI  257 (429)
T ss_pred             HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            9999999999888777777789999999998753 22 2555566665544

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=3.5e-06  Score=89.04  Aligned_cols=68  Identities=29%  Similarity=0.535  Sum_probs=57.8

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ  343 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  343 (683)
                      ..+++.||||++.+++|++++|||+||+.||+.|+. +...||.|+. . ...+.+|..+.+++..+...+
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999999 6678999996 2 226779999988888776544

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.00  E-value=5.7e-06  Score=60.59  Aligned_cols=43  Identities=44%  Similarity=0.904  Sum_probs=38.6

Q ss_pred             cccccccCCCCceecC-CccccchhhHHHHHhcCCCCCCCCCCc
Q 048793          278 RCPISLELMRNPVVVA-TGQTYDRQSISLWIESGHNTCPKTGQT  320 (683)
Q Consensus       278 ~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~  320 (683)
                      .|||+++.+.+|+.+. |||.|+..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888775 999999999999999877889999864

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.97  E-value=0.00022  Score=76.21  Aligned_cols=264  Identities=14%  Similarity=0.145  Sum_probs=178.2

Q ss_pred             hhhhHHHHHHHhccCCCHHH--HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          369 TKMTASFLINKLATSQSMEA--ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~--~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      .+|....|++++.++ +.+.  +.+|.+.|..+..  .+||+.++..| +..++.+-+..   ..++.+...+.+|.++-
T Consensus       178 ~~~~lD~Llrmf~aP-n~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~---e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAP-NLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKER---EPVELARSVAGILEHMF  250 (832)
T ss_pred             ccchHHHHHHHHhCC-chhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhc---CcHHHHHHHHHHHHHHh
Confidence            456788899999888 6554  7888888887764  36999999876 44444444322   15678888999999998


Q ss_pred             cC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          447 IL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       447 ~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      .| ++.+..++.. |++..++-..+.. ++....+++-+|.|++..  .+.+..+++ ..+-+-|..+-.+.+.-.+-+|
T Consensus       251 KHSeet~~~Lvaa-~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  251 KHSEETCQRLVAA-GGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             hhhHHHHHHHHhh-cccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHH
Confidence            77 4668888888 9999998888777 699999999999998865  457778887 6778888888776666678899


Q ss_pred             HHHHHHhcCCcchhHHHHhcCc---hHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHH
Q 048793          524 LVAILNLAGDRETVGRLVERGI---VEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~---V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      +-|..-|+.+.+--..+-+.|.   |++|+..+..+. -+..+-       ...++.. ..-+.-|+-+|.+  .+....
T Consensus       328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~-FARD~h-------d~aQG~~-~d~LqRLvPlLdS--~R~EAq  396 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR-FARDAH-------DYAQGRG-PDDLQRLVPLLDS--NRLEAQ  396 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch-hhhhhh-------hhhccCC-hHHHHHhhhhhhc--chhhhh
Confidence            9999999988776666666664   555666554321 011000       0000000 0114456666663  332223


Q ss_pred             HHHHHHHHHhcCC---chHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          601 AAATLVTICRKGG---SEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       601 A~~aL~~L~~~~~---~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ++++ +.+|....   ......++.+-|+++.|-++..+.+.-..+-|...|+.+.+
T Consensus       397 ~i~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  397 CIGA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            3333 23343211   01113456777999999999987777777888999999876

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.5e-06  Score=95.37  Aligned_cols=72  Identities=32%  Similarity=0.486  Sum_probs=67.1

Q ss_pred             CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793          271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ  343 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  343 (683)
                      .++|++|..|++.-+|+|||+.| +|+|.||+.|+.++-. ..+.|.||++|+.+.+.||..|+.-|+.|..++
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999999998 9999999999999986 668999999999999999999999999997654

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.1e-06  Score=78.47  Aligned_cols=52  Identities=25%  Similarity=0.600  Sum_probs=43.6

Q ss_pred             cccccccccCCCC--ceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          276 DFRCPISLELMRN--PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       276 ~f~CPis~~~m~d--Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      -|.||||++-+..  ||.+.|||.||+.||+..++. ...||.|++.+++.++.+
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence            4999999988855  556899999999999999987 558999999887766543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.95  E-value=0.0018  Score=69.14  Aligned_cols=267  Identities=14%  Similarity=0.106  Sum_probs=184.2

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhH---HHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhcccCc
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSR---ACIAEAGAIALLARHLGP-DTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr---~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ++.+.+|..+ +.-....+.+.|..++..+..+-   +.-...|   .|-..+.+ .    +....-.|+.+|..+...+
T Consensus       117 ~~fl~ll~r~-d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~----~~~~~~~~~rcLQ~ll~~~  188 (442)
T KOG2759|consen  117 LSFLNLLNRQ-DTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSST----NNDYIQFAARCLQTLLRVD  188 (442)
T ss_pred             HHHHHHHhcC-ChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccC----CCchHHHHHHHHHHHhcCc
Confidence            4567788777 77777778888888877664221   1111122   33445555 3    5666777888999999999


Q ss_pred             hhHHHHhcccCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVL-RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAI  527 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL-~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL  527 (683)
                      +.|..++.+ .++..++..| ++..+.+.+-..+-+++-|+..+...+.+-. .+.|+.|++++++.. ..+.+-.+.++
T Consensus       189 eyR~~~v~a-dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~  266 (442)
T KOG2759|consen  189 EYRYAFVIA-DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIF  266 (442)
T ss_pred             chhheeeec-CcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 7788888888 4433688899999999999999988888844 899999999998764 45778899999


Q ss_pred             HHhcCCcc-------hhHHHHhcCchHHHHHHhcc--CchhHHHHHHHH----HH----cCCcHHHHHH-----------
Q 048793          528 LNLAGDRE-------TVGRLVERGIVEIVAEAMDV--LPEESVTILEAV----VK----RGGLTAIVAA-----------  579 (683)
Q Consensus       528 ~nLs~~~~-------n~~~iv~aG~V~~Lv~lL~~--~~~~~~~aL~~L----~~----l~~~~e~~~~-----------  579 (683)
                      .|++...+       -...|+..++.+.+-.+...  +.+.....+..|    .+    +++-.+-..+           
T Consensus       267 ~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~  346 (442)
T KOG2759|consen  267 RNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPV  346 (442)
T ss_pred             HHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcc
Confidence            99988663       33455666655555444431  122211222211    11    2222111111           


Q ss_pred             -------------c-----CchHHHHHHHhcCC-hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHH
Q 048793          580 -------------Y-----NTIKKLCILLREGS-DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR  640 (683)
Q Consensus       580 -------------~-----g~v~~Lv~lL~~~s-~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~  640 (683)
                                   .     .-+..|+++|...+ |..-..|+.=+...-++.+.  ...++.+.|+=..+..|+.+.+++
T Consensus       347 Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk~vv~k~ggKe~vM~Llnh~d~~  424 (442)
T KOG2759|consen  347 HKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GKAVVEKYGGKERVMNLLNHEDPE  424 (442)
T ss_pred             ccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--HhHHHHHhchHHHHHHHhcCCCch
Confidence                         1     12456777777544 67777777777888887765  456788899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048793          641 ARRKAAALLRIL  652 (683)
Q Consensus       641 ~k~kA~~lL~~l  652 (683)
                      +|-.|...++.|
T Consensus       425 Vry~ALlavQ~l  436 (442)
T KOG2759|consen  425 VRYHALLAVQKL  436 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887765

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.93  E-value=4.9e-06  Score=83.04  Aligned_cols=64  Identities=16%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793          276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWC  340 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  340 (683)
                      -++|-||.+.++-|++++||||||--||..++.. +..||.|+.+.....+.-+..++..++.|.
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            4689999999999999999999999999999985 789999999888777777777777776664

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.91  E-value=4.4e-06  Score=61.59  Aligned_cols=40  Identities=33%  Similarity=0.772  Sum_probs=33.2

Q ss_pred             cccccccCCC---CceecCCccccchhhHHHHHhcCCCCCCCCC
Q 048793          278 RCPISLELMR---NPVVVATGQTYDRQSISLWIESGHNTCPKTG  318 (683)
Q Consensus       278 ~CPis~~~m~---dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~  318 (683)
                      .||||++-|.   .++.++|||+|.+.||.+|+.. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999998883   5557799999999999999987 56999985

...

>PF05536 Neurochondrin: Neurochondrin

Probab=97.90  E-value=0.00052  Score=78.28  Aligned_cols=233  Identities=13%  Similarity=0.101  Sum_probs=156.0

Q ss_pred             cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch----hHHHHhcccCcHHHHHHHHhcCC------CHHHHHHHHHH
Q 048793          415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA----NKTRIMETEGALNGVIEVLRSGA------TWEAKGNAAAT  484 (683)
Q Consensus       415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~----~k~~I~~~~G~I~~Lv~lL~~~~------~~~~~~~Aa~~  484 (683)
                      .+..-+.+|++.    +.+-+-.++..+.++..+++    .++.|.++ =+.+.+-++|+++.      ....+.-|..+
T Consensus         6 ~l~~c~~lL~~~----~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    6 SLEKCLSLLKSA----DDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             HHHHHHHHhccC----CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            345567788887    65555666777777765433    24567776 55788999998732      25667889999


Q ss_pred             HHHhhcCcchh--hHHhhhcccHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHH
Q 048793          485 IFSLSGVHAHR--KTLGRKTRVVKGLMDLVKGGPT-SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESV  561 (683)
Q Consensus       485 L~~Ls~~~~~~--~~i~~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~  561 (683)
                      |..+|..++..  ..+   .+-||.|++.+.+.+. ....+|..+|..++.+++++..+++.|+|+.|.+.+.+.+...+
T Consensus        81 L~~f~~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E  157 (543)
T PF05536_consen   81 LAAFCRDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQME  157 (543)
T ss_pred             HHHHcCChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHH
Confidence            99999977643  344   3569999999988777 88999999999999999999999999999999999987655577


Q ss_pred             HHHHHHHHcCCcHH--HHHH-c----CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCch---HHHHHHhcCCcHHHHH
Q 048793          562 TILEAVVKRGGLTA--IVAA-Y----NTIKKLCILLREGSDTSRESAAATLVTICRKGGSE---MVADIAAVPGIERVIW  631 (683)
Q Consensus       562 ~aL~~L~~l~~~~e--~~~~-~----g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~---~~~~~~~~~G~~~~L~  631 (683)
                      .++.+|.++.....  .... .    ..++.+...........+-..+..|..+-...+..   ....--.-..+..-|.
T Consensus       158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~  237 (543)
T PF05536_consen  158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence            77777766442211  1111 1    11334444454555666667777777776554210   0000011123456666


Q ss_pred             HHhhcC-CHHHHHHHHHHHHHHHhh
Q 048793          632 ELMESG-TARARRKAAALLRILRRW  655 (683)
Q Consensus       632 ~Ll~~~-~~~~k~kA~~lL~~l~~~  655 (683)
                      .++++. ++.-|..|..+...|-+.
T Consensus       238 ~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  238 DILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            777776 667777776666666553

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.86  E-value=2.1e-05  Score=56.98  Aligned_cols=40  Identities=30%  Similarity=0.400  Sum_probs=37.5

Q ss_pred             CchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          403 DSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       403 ~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      +++++..+++.|+||.|+.+|.+.    +.+++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~----~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP----DPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS----SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC----CHHHHHHHHHHHHHHh
Confidence            357899999999999999999998    9999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.00096  Score=78.88  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=153.7

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--c
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--E  449 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~  449 (683)
                      .+.+-.+|.|. +...|..|+.+|..++.+..+.  .... ..+++..+..|.++    ++.+|-.|+.+++.++.+  +
T Consensus       350 ~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il~~Vl~~l~Dp----hprVr~AA~naigQ~stdl~p  422 (1075)
T KOG2171|consen  350 FEALEAMLQST-EWKERHAALLALSVIAEGCSDV--MIGNLPKILPIVLNGLNDP----HPRVRYAALNAIGQMSTDLQP  422 (1075)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHhhhhhhcH
Confidence            34566788888 9999999999999988766432  2222 25777778888888    999999999999999976  3


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH-hhcCCChhHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD-LVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~  528 (683)
                      +..+.--+  -.++.|+..+.+..++.++.+|+.+|.|++..-.......--.+.+..++. ++.++++.+++.++++|.
T Consensus       423 ~iqk~~~e--~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa  500 (1075)
T KOG2171|consen  423 EIQKKHHE--RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA  500 (1075)
T ss_pred             HHHHHHHH--hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            33333222  477789999987657899999999999998765444433332456663443 456677889999999999


Q ss_pred             HhcCCcchhHHHHhcCchHHHHHHhccCc--h------hHHHHHHHHHHcCCcHHHHHHcCc-hHHHHHH---HhcCChH
Q 048793          529 NLAGDRETVGRLVERGIVEIVAEAMDVLP--E------ESVTILEAVVKRGGLTAIVAAYNT-IKKLCIL---LREGSDT  596 (683)
Q Consensus       529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~--~------~~~~aL~~L~~l~~~~e~~~~~g~-v~~Lv~l---L~~~s~~  596 (683)
                      ..+...+..-.=--.-.+|.|.+.|....  +      .+.++++.++.--|.......... +..+..+   ....++.
T Consensus       501 svA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~  580 (1075)
T KOG2171|consen  501 SVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDP  580 (1075)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccc
Confidence            98775443321112346777888876432  2      155677776664443333322211 2222222   1223556


Q ss_pred             HHHHHHHHHHHHHhcCCc
Q 048793          597 SRESAAATLVTICRKGGS  614 (683)
Q Consensus       597 ~ke~A~~aL~~L~~~~~~  614 (683)
                      .+++-...-.++|+--+.
T Consensus       581 ~~sy~~~~warmc~ilg~  598 (1075)
T KOG2171|consen  581 LRSYMIAFWARMCRILGD  598 (1075)
T ss_pred             cHHHHHHHHHHHHHHhch
Confidence            677777777788885554

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00029  Score=78.32  Aligned_cols=272  Identities=14%  Similarity=0.127  Sum_probs=182.4

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHH--HHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRA--CIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~--~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      ...+.|..+|.+. +...++.|.++|..++.++.+--.  +.-+  .-.||.++.+.+++    ++.++.+|+..+...-
T Consensus       128 elLp~L~~~L~s~-d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~----spkiRs~A~~cvNq~i  202 (885)
T KOG2023|consen  128 ELLPQLCELLDSP-DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP----SPKIRSHAVGCVNQFI  202 (885)
T ss_pred             hHHHHHHHHhcCC-cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC----ChhHHHHHHhhhhhee
Confidence            3578899999988 888899999999999988763211  1111  24789999999999    9999999999886654


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      ... +...+..-..+++.+..+-... ++++|++.|.+|..|-.....|..=-- .++|+-.+..-.+.+..+.-.|+.-
T Consensus       203 ~~~-~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEF  279 (885)
T KOG2023|consen  203 IIQ-TQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEF  279 (885)
T ss_pred             ecC-cHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHH
Confidence            332 2223332224666666665444 799999999999999877654433322 5677888877777788888889999


Q ss_pred             HHHhcCCcchhHHHHh--cCchHHHHHHhc---------c-Cch------------------------------------
Q 048793          527 ILNLAGDRETVGRLVE--RGIVEIVAEAMD---------V-LPE------------------------------------  558 (683)
Q Consensus       527 L~nLs~~~~n~~~iv~--aG~V~~Lv~lL~---------~-~~~------------------------------------  558 (683)
                      ...++..+--+..+..  ...||.|++-|.         . ..+                                    
T Consensus       280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe  359 (885)
T KOG2023|consen  280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDE  359 (885)
T ss_pred             HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccc
Confidence            9999988754444443  367777776442         0 000                                    


Q ss_pred             --------------hHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793          559 --------------ESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVP  624 (683)
Q Consensus       559 --------------~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~  624 (683)
                                    -.+.++.+|++.-+.. ...  -..|.|-..|.+..-.+||.++-+|.+++.++-+..+.- +  +
T Consensus       360 ~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~-L--p  433 (885)
T KOG2023|consen  360 DDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPH-L--P  433 (885)
T ss_pred             cccccccccccHhhccHHHHHHHHHhhHHH-HHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccc-h--H
Confidence                          0223444444322211 000  013333344445666789999999999987432211111 1  2


Q ss_pred             CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          625 GIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       625 G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      .++|.|+.++.+..+-+|.-+.|.|..++.|-
T Consensus       434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             HHHHHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence            46888899999999999999999999998864

>smart00184 RING Ring finger

Probab=97.84  E-value=1.5e-05  Score=56.13  Aligned_cols=39  Identities=49%  Similarity=1.038  Sum_probs=35.8

Q ss_pred             ccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCC
Q 048793          279 CPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKT  317 (683)
Q Consensus       279 CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~  317 (683)
                      |||+++...+|++++|||.|+..++.+|++.+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998667789975

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=4.3e-05  Score=83.85  Aligned_cols=73  Identities=25%  Similarity=0.415  Sum_probs=65.7

Q ss_pred             CCCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793          270 DANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ  343 (683)
Q Consensus       270 ~~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  343 (683)
                      ..+||++|..|++..+|+|||.+ .+|.|.+|+.|..++-. ..++|..|.||+-++++||..||+-|-.|....
T Consensus       848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence            35899999999999999999988 56899999999999876 568999999999999999999999999886543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00096  Score=76.15  Aligned_cols=54  Identities=13%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      +-++||.|..=.+|-|++.|||.||-.||+.-++.-...||.|+.++...++.|
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            557899999999999999999999999999999987889999999998887765

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.80  E-value=0.00019  Score=64.96  Aligned_cols=130  Identities=11%  Similarity=0.009  Sum_probs=104.3

Q ss_pred             CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHH
Q 048793          460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGR  539 (683)
Q Consensus       460 G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~  539 (683)
                      |.+..||.-..+..+.++++...+-|.|.+-++-|=..+.. ..++...|+-|...+...++.++..|.|||.+..|+.-
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            45777887777766899999999999999998888888877 89999999999999999999999999999999999999


Q ss_pred             HHhcCchHHHHHHhccCchh-HHHHHHHHHHcCCc-HHHHHHcCchHHHHHHHh
Q 048793          540 LVERGIVEIVAEAMDVLPEE-SVTILEAVVKRGGL-TAIVAAYNTIKKLCILLR  591 (683)
Q Consensus       540 iv~aG~V~~Lv~lL~~~~~~-~~~aL~~L~~l~~~-~e~~~~~g~v~~Lv~lL~  591 (683)
                      ++++|++|.++..+++.++. .-.++..|..++.. ...+..+ --|.++..+.
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el-l~p~Vv~~v~  147 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL-LSPAVVRTVQ  147 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh-ccHHHHHHHH
Confidence            99999999999999976665 55666667666632 2222222 2355556554

>TIGR02270 conserved hypothetical protein

Probab=97.72  E-value=0.0035  Score=68.97  Aligned_cols=208  Identities=13%  Similarity=0.008  Sum_probs=108.7

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      +..|+..|... ++.++..++..|..+           ...++.+.|+.+|.+.    ++.++..++.++..        
T Consensus        88 ~~~L~~~L~d~-~~~vr~aaa~ALg~i-----------~~~~a~~~L~~~L~~~----~p~vR~aal~al~~--------  143 (410)
T TIGR02270        88 LRSVLAVLQAG-PEGLCAGIQAALGWL-----------GGRQAEPWLEPLLAAS----EPPGRAIGLAALGA--------  143 (410)
T ss_pred             HHHHHHHhcCC-CHHHHHHHHHHHhcC-----------CchHHHHHHHHHhcCC----ChHHHHHHHHHHHh--------
Confidence            44455555544 455555555555322           1124455566666665    66666555544433        


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                         ... ...+.+..+|++. ++.++..|+.+|..+-          . ..+++.|...+.+.++.++..|+.+|..+-.
T Consensus       144 ---r~~-~~~~~L~~~L~d~-d~~Vra~A~raLG~l~----------~-~~a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       144 ---HRH-DPGPALEAALTHE-DALVRAAALRALGELP----------R-RLSESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             ---hcc-ChHHHHHHHhcCC-CHHHHHHHHHHHHhhc----------c-ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence               111 2345566666655 5666666666666542          2 3455666666666666666666666644321


Q ss_pred             CcchhHHHHhcCchHHHHHHhc-cCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793          533 DRETVGRLVERGIVEIVAEAMD-VLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK  611 (683)
Q Consensus       533 ~~~n~~~iv~aG~V~~Lv~lL~-~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~  611 (683)
                                .+++.+++.+.. .+......+..++... +.+      ..++.|..+++.  +.+++.++.+|-.+-  
T Consensus       208 ----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~------~a~~~L~~ll~d--~~vr~~a~~AlG~lg--  266 (410)
T TIGR02270       208 ----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGP------DAQAWLRELLQA--AATRREALRAVGLVG--  266 (410)
T ss_pred             ----------HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cch------hHHHHHHHHhcC--hhhHHHHHHHHHHcC--
Confidence                      122334444222 1222222223333222 211      234455555543  336666666644332  


Q ss_pred             CCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          612 GGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       612 ~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                                 ....++.|+.++.+..  +++.|...++.+..
T Consensus       267 -----------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       267 -----------DVEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             -----------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence                       2345677777666544  99999999999987

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=6.4e-06  Score=84.90  Aligned_cols=68  Identities=22%  Similarity=0.378  Sum_probs=56.0

Q ss_pred             CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCC-CCCcchHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAH-TNLVTNTALKNLIALW  339 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~  339 (683)
                      .+-.+|.||||+++++-..++ .|+|.||+.||-+-+..|+..||.|++.+.. ..|.+...+..+|.+.
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            355789999999999999888 8999999999999999999999999999864 3566554455666654

>PHA02926 zinc finger-like protein; Provisional

Probab=97.70  E-value=2.6e-05  Score=75.86  Aligned_cols=51  Identities=16%  Similarity=0.417  Sum_probs=41.1

Q ss_pred             CCCCcccccccccCCCC---------ceecCCccccchhhHHHHHhcC-----CCCCCCCCCccC
Q 048793          272 NVPADFRCPISLELMRN---------PVVVATGQTYDRQSISLWIESG-----HNTCPKTGQTLA  322 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~d---------Pv~~~~g~ty~r~~I~~w~~~g-----~~~cP~~~~~l~  322 (683)
                      ....+..|+||++...+         +++.+|||+||..||.+|.+..     ..+||.||+.+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34567889999998754         4777999999999999999742     356999998764

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.69  E-value=5.3e-05  Score=78.44  Aligned_cols=52  Identities=29%  Similarity=0.546  Sum_probs=42.1

Q ss_pred             Cccccccccc-CCCCce---ec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793          275 ADFRCPISLE-LMRNPV---VV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL  326 (683)
Q Consensus       275 ~~f~CPis~~-~m~dPv---~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l  326 (683)
                      ++..||+|.. ....|-   ++ +|||+||++||...|..|...||.|+.++....+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f   58 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF   58 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence            5678999986 344553   33 7999999999999988888899999999887663

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0076  Score=71.58  Aligned_cols=273  Identities=15%  Similarity=0.139  Sum_probs=158.6

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-h
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-N  451 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~  451 (683)
                      +.+.+.+..+ +..++..|++++..++...+.|+..... ...+|.++..|......+|...-..++.+|-.|..... .
T Consensus       162 ~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  162 RLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            3444555555 3348888999888888777545544444 36778787777654433366555666666666654321 1


Q ss_pred             HHHHhcccCcHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCcchhhH----Hh---------------------------
Q 048793          452 KTRIMETEGALNGVIEVLRSG-ATWEAKGNAAATIFSLSGVHAHRKT----LG---------------------------  499 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~-~~~~~~~~Aa~~L~~Ls~~~~~~~~----i~---------------------------  499 (683)
                      -.....  ..|.....+.++. .+..+|..|...|..++.......+    ++                           
T Consensus       241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d  318 (1075)
T KOG2171|consen  241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD  318 (1075)
T ss_pred             HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence            111111  1344444444432 2356677777777666654110000    00                           


Q ss_pred             hh-------------------cc-------cHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc---CchHHHH
Q 048793          500 RK-------------------TR-------VVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVER---GIVEIVA  550 (683)
Q Consensus       500 ~~-------------------~G-------~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv  550 (683)
                      ++                   -|       .++.+-.+|.+.+..-++.|+.||..++.+   +...+..   .+++..+
T Consensus       319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl  395 (1075)
T KOG2171|consen  319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPIVL  395 (1075)
T ss_pred             cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHH
Confidence            00                   00       233333445566666667777777666542   2222221   3344445


Q ss_pred             HHhccC-chhHHHHHHHHHHcCCc--HHHH--HHcCchHHHHHHHh-cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793          551 EAMDVL-PEESVTILEAVVKRGGL--TAIV--AAYNTIKKLCILLR-EGSDTSRESAAATLVTICRKGGSEMVADIAAVP  624 (683)
Q Consensus       551 ~lL~~~-~~~~~~aL~~L~~l~~~--~e~~--~~~g~v~~Lv~lL~-~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~  624 (683)
                      ..|.+. +.+.-.|+-++..++++  ++.-  .+....+.|+..+. .++++++-+|+.+|.+.............+  .
T Consensus       396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d  473 (1075)
T KOG2171|consen  396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--D  473 (1075)
T ss_pred             hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--H
Confidence            555543 34455566666666643  2222  22234567878775 478899999999999998776665666665  4


Q ss_pred             CcHH-HHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          625 GIER-VIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       625 G~~~-~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      +++. .|..|.+++++.+|+.|...|.-...
T Consensus       474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            6676 77778999999999999998876655

>PF05536 Neurochondrin: Neurochondrin

Probab=97.65  E-value=0.0032  Score=71.92  Aligned_cols=234  Identities=15%  Similarity=0.152  Sum_probs=158.6

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh---HHHHHHhCcHHHHHHhhCCCCC---CCChhhHHHHHHHHHhc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDS---RACIAEAGAIALLARHLGPDTA---SRLPNLQVNAVTTILNL  445 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n---r~~i~~~G~Ip~Lv~lL~s~~~---~~d~~~qe~A~~aL~nL  445 (683)
                      .+...+.+|++. +.+.+..++--+.++.+.++.+   ++.+.++=+...|-+||.++..   .+....+.-|+++|..+
T Consensus         6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            355678899988 7788899999999999877643   4457787567899999998532   12346778899999999


Q ss_pred             ccCchhH--HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          446 SILEANK--TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       446 s~~~~~k--~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      +.+++..  ..++   +-||.|++++.++.+.+....+..+|..++..++++..+.. .|+|+.|++.+.+ .+...+.|
T Consensus        85 ~~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~A  159 (543)
T PF05536_consen   85 CRDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIA  159 (543)
T ss_pred             cCChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHH
Confidence            9877653  3444   45999999999874448999999999999999999999999 8999999999987 55678999


Q ss_pred             HHHHHHhcCCcchhHHHHhc----CchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-----HHcC----chHHHHHH
Q 048793          524 LVAILNLAGDRETVGRLVER----GIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-----AAYN----TIKKLCIL  589 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~a----G~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-----~~~g----~v~~Lv~l  589 (683)
                      +.+|.+++...+....--..    .+++.|-...... .......+..|..+=...+..     ....    ....|..+
T Consensus       160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i  239 (543)
T PF05536_consen  160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI  239 (543)
T ss_pred             HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence            99999997754421111111    2233333333322 334566677775532222110     0001    12345555


Q ss_pred             Hhc-CChHHHHHHHHHHHHHHhc
Q 048793          590 LRE-GSDTSRESAAATLVTICRK  611 (683)
Q Consensus       590 L~~-~s~~~ke~A~~aL~~L~~~  611 (683)
                      |++ .++..|..|..+...|...
T Consensus       240 L~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  240 LQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHH
Confidence            654 4666666666655555543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.61  E-value=7.6e-05  Score=54.00  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      ++++..+.+ .|+||+|+.+|+++++++++.|+++|.||+.
T Consensus         2 ~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            567888888 8999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PTZ00429 beta-adaptin; Provisional

Probab=97.56  E-value=0.014  Score=68.93  Aligned_cols=254  Identities=11%  Similarity=0.088  Sum_probs=164.9

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      +..++.+.+. +.+.+.-..-.|.+.++..++.-.     =+|..|.+=|.+.    |+.++..|+.+|.++-.     .
T Consensus        71 ~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~----Np~IRaLALRtLs~Ir~-----~  135 (746)
T PTZ00429         71 VDVVKLAPST-DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNS----SPVVRALAVRTMMCIRV-----S  135 (746)
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCC----CHHHHHHHHHHHHcCCc-----H
Confidence            3456667777 888877777777777765553211     2466677777777    99999999999988743     2


Q ss_pred             HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793          454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD  533 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  533 (683)
                      .+++.  .++.+.+.|.+. ++-+|+.|+-++.++-..+..  .+.. .|.++.|.++|.+.++.+..+|+.+|..++..
T Consensus       136 ~i~e~--l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~pe--lv~~-~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        136 SVLEY--TLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDMQ--LFYQ-QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHHHH--HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCcc--cccc-cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            33332  566777888776 799999999999999765442  2333 68999999999999999999999999999865


Q ss_pred             cchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793          534 RETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK  611 (683)
Q Consensus       534 ~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~  611 (683)
                      ..+.-. ...+.+..|+..|.+..+ .....+..|....- ..+.  ....+..+...|++.++.+.-.|+.+++.+...
T Consensus       210 ~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        210 GSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             CchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            443221 234556666776654333 25566666655321 1111  112345566667778888888888888888754


Q ss_pred             CCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          612 GGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       612 ~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ........++.  .+.++|+.| .++.+.+|--+..-|..+..
T Consensus       287 ~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        287 CSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             CCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence            32222222221  133556666 34566777666655544443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.49  E-value=0.00015  Score=76.78  Aligned_cols=51  Identities=29%  Similarity=0.519  Sum_probs=46.2

Q ss_pred             ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      +.|.|++++-++||+- .+||.|||+.|++++.+ +.+||+|+++|...+++|
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            4699999999999977 78999999999999987 678999999998887765

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=7.1e-05  Score=74.71  Aligned_cols=52  Identities=19%  Similarity=0.403  Sum_probs=46.0

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHH-HHhcCCCCCCCCCCccCCC
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISL-WIESGHNTCPKTGQTLAHT  324 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~-w~~~g~~~cP~~~~~l~~~  324 (683)
                      +..+|.|+||++.+.+|+-++|||.||=.||-. |..+....||.||+...+.
T Consensus       212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            357999999999999999999999999999999 9887677899999765443

>PTZ00429 beta-adaptin; Provisional

Probab=97.43  E-value=0.022  Score=67.17  Aligned_cols=180  Identities=11%  Similarity=0.032  Sum_probs=116.9

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .+..+.+.|.+. ++-+|..|+-++.++-..++   ..+.+.|.++.|..+|...    |+.++.+|+.+|..+......
T Consensus       141 l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~----dp~Vv~nAl~aL~eI~~~~~~  212 (746)
T PTZ00429        141 TLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN----NPVVASNAAAIVCEVNDYGSE  212 (746)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC----CccHHHHHHHHHHHHHHhCch
Confidence            345566777777 99999999999999876555   3445678999999999988    999999999999999754333


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      .-.+. . +.+..|+..|..- +.=.+.....+|....  +......   ...+..+...|.+.++.+.-.|+.++.++.
T Consensus       213 ~l~l~-~-~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        213 KIESS-N-EWVNRLVYHLPEC-NEWGQLYILELLAAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             hhHHH-H-HHHHHHHHHhhcC-ChHHHHHHHHHHHhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            22222 2 4566677777654 3445555555553321  1111111   356778888888888889999999999997


Q ss_pred             CCcc-hhHHHHhcCchHHHHHHhccCchhHHHHHHHH
Q 048793          532 GDRE-TVGRLVERGIVEIVAEAMDVLPEESVTILEAV  567 (683)
Q Consensus       532 ~~~~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L  567 (683)
                      ...+ .....+-.-..++|+.++.++++..--+|..|
T Consensus       285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I  321 (746)
T PTZ00429        285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNI  321 (746)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH
Confidence            6531 11111111233667777665555544444444

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.43  E-value=0.0012  Score=73.79  Aligned_cols=152  Identities=15%  Similarity=0.151  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALN  463 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~  463 (683)
                      |......|+-.+..++..-..-|.-+....++.+||++|..+    +..++..++.+|.|+... .+.|...... |+|+
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp----~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId  464 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP----EIMIMGITLGAICNLVMEFSNLKSKFLRN-NGID  464 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc----chhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHH
Confidence            677777788788777765444555566678999999999887    888999999999999864 6778888898 9999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhc-ccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-cchhHHHH
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKT-RVVKGLMDLVKGGPTSSKRDALVAILNLAGD-RETVGRLV  541 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv  541 (683)
                      .+...+.+. +...|.++.|+|+++..+.+......-.. =.-..++.+..+++..+++.+...|.||.-+ .+....++
T Consensus       465 ~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  465 ILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            999999988 68999999999999998876544432211 2344567777888899999999999999554 44555555


Q ss_pred             h
Q 048793          542 E  542 (683)
Q Consensus       542 ~  542 (683)
                      +
T Consensus       544 ~  544 (678)
T KOG1293|consen  544 E  544 (678)
T ss_pred             H
Confidence            4

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.39  E-value=0.00017  Score=72.54  Aligned_cols=66  Identities=20%  Similarity=0.391  Sum_probs=55.5

Q ss_pred             ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCc-cCCCCCcchHHHHHHHHHHHHH
Q 048793          277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQT-LAHTNLVTNTALKNLIALWCRE  342 (683)
Q Consensus       277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~  342 (683)
                      +.||+|+.++++|+-+ +|||+||..||+..+-+....||.|... .--+.+.|.+..+..++.+...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            8999999999999988 8999999999999987667899999653 3345678988888888887653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.37  E-value=0.039  Score=60.07  Aligned_cols=270  Identities=18%  Similarity=0.160  Sum_probs=171.7

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR  454 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~  454 (683)
                      .+..++-++ +.+++..+.+.+|.+..+.. .-..+.+.+.--.++.-|.....  +..-++.|+..+..+.....+...
T Consensus        29 ~i~~~lL~~-~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~  104 (371)
T PF14664_consen   29 RIQCMLLSD-SKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKE  104 (371)
T ss_pred             HHHHHHCCC-cHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCccc
Confidence            344455556 68888888999988877654 66777777766666777766521  445678899888777544333333


Q ss_pred             HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793          455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  534 (683)
                      + .. |.+..||.+..+. +...+..|..+|..++..+.  ..+.. .||+..|++.+.++..+..+..+.++.++-.++
T Consensus       105 ~-~~-~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  105 I-PR-GVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             C-CH-HHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence            3 33 7899999999987 67899999999999987643  23334 899999999998887778888999999999999


Q ss_pred             chhHHHHhcCchHHHHHHhccC--------c--hh---HHHHHHHH-HHcCCcHHHH-HHcCchHHHHHHHhcCChHHHH
Q 048793          535 ETVGRLVERGIVEIVAEAMDVL--------P--EE---SVTILEAV-VKRGGLTAIV-AAYNTIKKLCILLREGSDTSRE  599 (683)
Q Consensus       535 ~n~~~iv~aG~V~~Lv~lL~~~--------~--~~---~~~aL~~L-~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke  599 (683)
                      ..|..+...--+..++.-..+.        .  +.   +..++..+ ....|---.. ....++..|+..|...++.+++
T Consensus       179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence            8887765433344444443321        1  12   22222222 2222100000 0002344455544444444444


Q ss_pred             HHHHHHHHHHhc--------------------------------------------CCc------hHHHHHHhcCCcHHH
Q 048793          600 SAAATLVTICRK--------------------------------------------GGS------EMVADIAAVPGIERV  629 (683)
Q Consensus       600 ~A~~aL~~L~~~--------------------------------------------~~~------~~~~~~~~~~G~~~~  629 (683)
                      .-..+|..+-.-                                            ..+      .....++.+.|+++.
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~  338 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA  338 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence            444444332110                                            000      123445778999999


Q ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793          630 IWELMESG-TARARRKAAALLRILRR  654 (683)
Q Consensus       630 L~~Ll~~~-~~~~k~kA~~lL~~l~~  654 (683)
                      |+.+..+. ++...+||.-||.-+-+
T Consensus       339 L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  339 LVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            99998888 88999999999886544

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00012  Score=79.53  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=58.0

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhc----CCCCCCCCCCccCCCCCcch----HHHHHHHHHHHHHcC
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES----GHNTCPKTGQTLAHTNLVTN----TALKNLIALWCREQR  344 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~~~l~pn----~~l~~~i~~~~~~~~  344 (683)
                      ++.+..||||++.-.-|+.+.|||.||-.||-++|..    +...||.|+..+...++.|-    ..-++.++..+..||
T Consensus       183 ~~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng  262 (513)
T KOG2164|consen  183 GSTDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG  262 (513)
T ss_pred             cCcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence            3448899999999999999999999999999998864    45789999998887776653    223445777788887

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.36  E-value=0.00015  Score=53.41  Aligned_cols=40  Identities=20%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             ccccccCC---CCceecCCccccchhhHHHHHhcCCCCCCCCCC
Q 048793          279 CPISLELM---RNPVVVATGQTYDRQSISLWIESGHNTCPKTGQ  319 (683)
Q Consensus       279 CPis~~~m---~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~  319 (683)
                      ||++.+.+   ..|++++|||+|+..||.++. .....||+|++
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            88998888   467899999999999999998 44678999974

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.004  Score=70.84  Aligned_cols=236  Identities=17%  Similarity=0.168  Sum_probs=171.2

Q ss_pred             hHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCc------hhH------HHHHH-----hCcHHHHHHhhCCCCCCCChh
Q 048793          372 TASFLINKLATS-QSMEAANDAVYELRSLSKTDS------DSR------ACIAE-----AGAIALLARHLGPDTASRLPN  433 (683)
Q Consensus       372 ~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~------~nr------~~i~~-----~G~Ip~Lv~lL~s~~~~~d~~  433 (683)
                      +.+.|+..|..+ .|++....++..+.++..+++      ..+      .||++     .+.|..|+.++...    |-.
T Consensus        62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~----DF~  137 (970)
T KOG0946|consen   62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF----DFH  137 (970)
T ss_pred             ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh----chh
Confidence            456677777653 488999999999999887763      222      23333     48999999999998    999


Q ss_pred             hHHHHHHHHHhccc--CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHh
Q 048793          434 LQVNAVTTILNLSI--LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDL  511 (683)
Q Consensus       434 ~qe~A~~aL~nLs~--~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~l  511 (683)
                      ++..|+..|.+|-.  ..+.+..+...|-+|..|+.+|... ...+|-.+.-.|..|+.+..+-.+++.-..++.-|..+
T Consensus       138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsI  216 (970)
T KOG0946|consen  138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSI  216 (970)
T ss_pred             hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            99999999998854  3567888888889999999999877 47788888889999999988888888778999999999


Q ss_pred             hcCCC-h---hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhcc---Cc-h-------h---HHHHHHHHHHcC-
Q 048793          512 VKGGP-T---SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDV---LP-E-------E---SVTILEAVVKRG-  571 (683)
Q Consensus       512 L~~~~-~---~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~---~~-~-------~---~~~aL~~L~~l~-  571 (683)
                      +.+.. .   -+.++|+..|-||-.++ .|...+.+.|.||.|.++|..   +. +       .   .-.+|-++..+. 
T Consensus       217 IeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVs  296 (970)
T KOG0946|consen  217 IEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVS  296 (970)
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcC
Confidence            97532 2   26799999999998854 699999999999999999862   11 1       1   222333333221 


Q ss_pred             -CcHHH--------HHHcCchHHHHHHHhc--CChHHHHHHHHHHHHHHhcC
Q 048793          572 -GLTAI--------VAAYNTIKKLCILLRE--GSDTSRESAAATLVTICRKG  612 (683)
Q Consensus       572 -~~~e~--------~~~~g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~  612 (683)
                       ++...        ....+.+..|..++.+  ....++-.+.-++.++.+++
T Consensus       297 P~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  297 PGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN  348 (970)
T ss_pred             CCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence             22222        1222445666665543  24556666777777776643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.047  Score=64.03  Aligned_cols=253  Identities=15%  Similarity=0.169  Sum_probs=163.6

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR  454 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~  454 (683)
                      -+...|....++..+.-|+..+..++... +.-.-+++.|.+-.|+.+|.+.     +..++.++.+|..|+...+.-..
T Consensus      1775 l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS~-----PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1775 LLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHSQ-----PSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhcC-----hHHHHHHHHHHHHHhcCcHHHHH
Confidence            34444443326778888888888777644 4777788899999999999885     78899999999999998877777


Q ss_pred             HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-------------------------------------ch---
Q 048793          455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-------------------------------------AH---  494 (683)
Q Consensus       455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-------------------------------------~~---  494 (683)
                      -++. |++.-|..++-...+++.|..|+..|..|...+                                     +|   
T Consensus      1849 A~~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1849 ALEH-GGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred             HHhc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence            7777 888888888876667899999999999887654                                     00   


Q ss_pred             --------------------------------------------------------hhHHhh-----------hcccHHH
Q 048793          495 --------------------------------------------------------RKTLGR-----------KTRVVKG  507 (683)
Q Consensus       495 --------------------------------------------------------~~~i~~-----------~~G~i~~  507 (683)
                                                                              |..+..           -.|.++.
T Consensus      1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred             ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence                                                                    000000           0013344


Q ss_pred             HHHhhcCCChh--HHHHHHHHHHHhcC-CcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCC---cHHHHHHc
Q 048793          508 LMDLVKGGPTS--SKRDALVAILNLAG-DRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGG---LTAIVAAY  580 (683)
Q Consensus       508 Lv~lL~~~~~~--~~~~A~~aL~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~---~~e~~~~~  580 (683)
                      +.+++...++.  ...--..|+..|-. ++.-...+-.-|.+|.++..+.- +...-..|+.+|..++.   +.+.....
T Consensus      2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l 2087 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL 2087 (2235)
T ss_pred             HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc
Confidence            44444433322  11222233333333 33344555567999999998852 22223445555554443   34455555


Q ss_pred             CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc
Q 048793          581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES  636 (683)
Q Consensus       581 g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~  636 (683)
                      ..+.++++.|+..-. .---|+.+|..+.....++.+.+.+ ..|.++.|+.|+..
T Consensus      2088 ~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~L-K~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQML-KCGLVPYLLQLLDS 2141 (2235)
T ss_pred             ccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHh-ccCcHHHHHHHhcc
Confidence            566678887764322 2237888999888766666666644 68999999999775

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.28  E-value=0.017  Score=61.83  Aligned_cols=229  Identities=16%  Similarity=0.146  Sum_probs=156.7

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRI  455 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I  455 (683)
                      |-..+.++.+.+-..-|+++|..+...++ .|..++.++++..|+..|.++.+  +..+|-+.+-++.-|+.++...+.+
T Consensus       161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~--~~QlQYqsifciWlLtFn~~~ae~~  237 (442)
T KOG2759|consen  161 LKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKC--GFQLQYQSIFCIWLLTFNPHAAEKL  237 (442)
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCc--chhHHHHHHHHHHHhhcCHHHHHHH
Confidence            33445553366777788889999988764 99999999999999999843322  7789999999999999888887777


Q ss_pred             hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-------chhhHHhhhcccHHHHHHhhcCC---ChhHHHHH--
Q 048793          456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-------AHRKTLGRKTRVVKGLMDLVKGG---PTSSKRDA--  523 (683)
Q Consensus       456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-------~~~~~i~~~~G~i~~Lv~lL~~~---~~~~~~~A--  523 (683)
                      ... +.|+.|+.++++.....+.+..++++.||....       +.+..++  .+.++.-++.|..+   +++...+.  
T Consensus       238 ~~~-~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~  314 (442)
T KOG2759|consen  238 KRF-DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEF  314 (442)
T ss_pred             hhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHH
Confidence            555 899999999997655778889999999998765       2333444  35667777777543   22222111  


Q ss_pred             -----HHHHHHhcCC------------------------cchhHHHHhc--CchHHHHHHhccCchh-----HHHHHHHH
Q 048793          524 -----LVAILNLAGD------------------------RETVGRLVER--GIVEIVAEAMDVLPEE-----SVTILEAV  567 (683)
Q Consensus       524 -----~~aL~nLs~~------------------------~~n~~~iv~a--G~V~~Lv~lL~~~~~~-----~~~aL~~L  567 (683)
                           -.-...||+.                        .+|..++-+.  .++..|+.+|..+.+-     +..=++..
T Consensus       315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~  394 (442)
T KOG2759|consen  315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY  394 (442)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence                 1111222221                        3466777664  5788999999754321     22222222


Q ss_pred             H-HcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          568 V-KRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       568 ~-~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      . ........+...||=..+.++|.+.++++|-+|..++-.|-.
T Consensus       395 Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  395 VRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            2 233344455666888999999999999999999988766543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.28  E-value=0.0011  Score=56.02  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             HHHHHHHh-ccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          373 ASFLINKL-ATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       373 i~~Lv~~L-~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      |+.|++.| .+. ++.++..|+..|..+.           ...++|.|+.+++++    ++.++..|+.+|..+-     
T Consensus         1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~i~-----   59 (88)
T PF13646_consen    1 IPALLQLLQNDP-DPQVRAEAARALGELG-----------DPEAIPALIELLKDE----DPMVRRAAARALGRIG-----   59 (88)
T ss_dssp             HHHHHHHHHTSS-SHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSS----SHHHHHHHHHHHHCCH-----
T ss_pred             CHHHHHHHhcCC-CHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCC----CHHHHHHHHHHHHHhC-----
Confidence            57789989 666 9999999999998442           125699999999888    9999999999999872     


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF  486 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~  486 (683)
                           . +.+++.|.+++.+..+..++..|+.+|.
T Consensus        60 -----~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -----D-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -----H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -----C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                 2 3689999999988755667888888763

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.20  E-value=0.00025  Score=77.59  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=55.0

Q ss_pred             CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc-hHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT-NTALKNLIALW  339 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~  339 (683)
                      .+.+++.||+|..++.||+.+ .|||.||+.||..|... +..||.+++.+......| -..+++.+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            367789999999999999995 99999999999999988 889999988877666555 23445555544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.19  E-value=0.0016  Score=55.10  Aligned_cols=86  Identities=20%  Similarity=0.284  Sum_probs=69.3

Q ss_pred             HHHHHHhh-CCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793          416 IALLARHL-GPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH  494 (683)
Q Consensus       416 Ip~Lv~lL-~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~  494 (683)
                      ||.|+..| .++    ++.++..|+.+|.++-          . +.+++.|++++++. ++.+|..|+.+|..+      
T Consensus         1 i~~L~~~l~~~~----~~~vr~~a~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i------   58 (88)
T PF13646_consen    1 IPALLQLLQNDP----DPQVRAEAARALGELG----------D-PEAIPALIELLKDE-DPMVRRAAARALGRI------   58 (88)
T ss_dssp             HHHHHHHHHTSS----SHHHHHHHHHHHHCCT----------H-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCC------
T ss_pred             CHHHHHHHhcCC----CHHHHHHHHHHHHHcC----------C-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHh------
Confidence            68899988 777    9999999999998542          1 14689999999877 799999999999977      


Q ss_pred             hhHHhhhcccHHHHHHhhcCCChh-HHHHHHHHHH
Q 048793          495 RKTLGRKTRVVKGLMDLVKGGPTS-SKRDALVAIL  528 (683)
Q Consensus       495 ~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~aL~  528 (683)
                          +. ..+++.|.+++.+++.. ++..|+.+|.
T Consensus        59 ----~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   59 ----GD-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HH-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----CC-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                33 67899999999876544 5788888773

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.06  E-value=0.00057  Score=56.23  Aligned_cols=39  Identities=33%  Similarity=0.702  Sum_probs=31.8

Q ss_pred             ccccccCCCCc-------------eecCCccccchhhHHHHHhcCCCCCCCCC
Q 048793          279 CPISLELMRNP-------------VVVATGQTYDRQSISLWIESGHNTCPKTG  318 (683)
Q Consensus       279 CPis~~~m~dP-------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~  318 (683)
                      |+||++.|.||             +..+|||.|-..||.+|+.. +.+||.||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999998444             34489999999999999986 45999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.06  E-value=0.0012  Score=47.20  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          405 DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       405 ~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      +++..+.+.|++|.|+.+|.++    +..++..|+++|.||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~----~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE----DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHc
Confidence            4888999999999999999988    9999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.04  E-value=0.087  Score=58.97  Aligned_cols=247  Identities=13%  Similarity=0.157  Sum_probs=158.4

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhccc-CchhHHHHhcccCcH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSI-LEANKTRIMETEGAL  462 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I  462 (683)
                      +.++..+|+++|+|+...++..|..+++.|..+.++..|+..... .+.++.-....+|+-++. ..+.+..++...+++
T Consensus        45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~  124 (446)
T PF10165_consen   45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGV  124 (446)
T ss_pred             ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhH
Confidence            788999999999999999999999999999999999999875221 256777778888877764 456676676655888


Q ss_pred             HHHHHHHhc--------C--------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC---------Ch
Q 048793          463 NGVIEVLRS--------G--------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG---------PT  517 (683)
Q Consensus       463 ~~Lv~lL~~--------~--------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~---------~~  517 (683)
                      ..|+..|..        .        .+.+....+..++||+......... -...+.++.|+.+|..-         ..
T Consensus       125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~  203 (446)
T PF10165_consen  125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLD  203 (446)
T ss_pred             HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence            888887751        1        1244566788889999765433322 11135566666654321         13


Q ss_pred             hHHHHHHHHHHHhcCCc-ch-------hHH----HHhcCchHHHHHHhcc----C-----chhHHHHHHHHHHcCCc-HH
Q 048793          518 SSKRDALVAILNLAGDR-ET-------VGR----LVERGIVEIVAEAMDV----L-----PEESVTILEAVVKRGGL-TA  575 (683)
Q Consensus       518 ~~~~~A~~aL~nLs~~~-~n-------~~~----iv~aG~V~~Lv~lL~~----~-----~~~~~~aL~~L~~l~~~-~e  575 (683)
                      ....+++.+|.|+-... ..       ...    ......+..|+++|..    .     .+.....+.+|..++.. ..
T Consensus       204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~  283 (446)
T PF10165_consen  204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE  283 (446)
T ss_pred             hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence            46688889999883211 11       111    1223467777777751    1     13355666677665543 22


Q ss_pred             HHHHc-----------------C-c-hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc
Q 048793          576 IVAAY-----------------N-T-IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES  636 (683)
Q Consensus       576 ~~~~~-----------------g-~-v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~  636 (683)
                      .+...                 | . -..|+++|.+..+..|..+...|+.||..+.    ..+++.-|.--.---|.+.
T Consensus       284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~----~~~v~~~GyG~AaG~L~~~  359 (446)
T PF10165_consen  284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA----SRFVKYVGYGNAAGFLASR  359 (446)
T ss_pred             HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH----HHHHHHcCchhHHHHHHHc
Confidence            21111                 1 1 3467788877779999999999999998543    3445555654433333333

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.02  E-value=0.25  Score=54.97  Aligned_cols=257  Identities=16%  Similarity=0.170  Sum_probs=138.9

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ..|+|-.+|++. -..++.++++.++.++..+-  -..+.+ -.|..|-.+|+++    ....|-.|+.+|..|+.-...
T Consensus       265 ~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~----rv~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         265 LRPFLNSWLSDK-FEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKST----RVVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             HHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhhCCc
Confidence            457777788776 57888999999999887652  122222 3577888899998    889999999999999754332


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      +..+...  -++.|+   ... +...-..|..+|..-- .+++-..++.   .|+..+.=+.+   .-+.-++.|+..||
T Consensus       337 kv~vcN~--evEsLI---sd~-Nr~IstyAITtLLKTG-t~e~idrLv~---~I~sfvhD~SD---~FKiI~ida~rsLs  403 (898)
T COG5240         337 KVSVCNK--EVESLI---SDE-NRTISTYAITTLLKTG-TEETIDRLVN---LIPSFVHDMSD---GFKIIAIDALRSLS  403 (898)
T ss_pred             eeeecCh--hHHHHh---hcc-cccchHHHHHHHHHcC-chhhHHHHHH---HHHHHHHhhcc---CceEEeHHHHHHHH
Confidence            2221111  122222   111 1222223333332211 1111111111   12222222221   22222333333333


Q ss_pred             CCcc-hhH--------HHHhcC-------chHHHHHHhccCchhHHHHHHHHHHc---CCcHHHHHHc----Cc------
Q 048793          532 GDRE-TVG--------RLVERG-------IVEIVAEAMDVLPEESVTILEAVVKR---GGLTAIVAAY----NT------  582 (683)
Q Consensus       532 ~~~~-n~~--------~iv~aG-------~V~~Lv~lL~~~~~~~~~aL~~L~~l---~~~~e~~~~~----g~------  582 (683)
                      ..-+ .+.        .+.+.|       +|.++.+++...++..+.||..||..   |..++....+    |.      
T Consensus       404 l~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~  483 (898)
T COG5240         404 LLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK  483 (898)
T ss_pred             hhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC
Confidence            3211 111        112223       24456666665677888888888763   3334433222    11      


Q ss_pred             -----hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          583 -----IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       583 -----v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                           +..+...+--.+.-+|..|+.+|...+-+..+....+     .+.-.|-..+.+.++.+|..|+.+|+.++.
T Consensus       484 ~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         484 TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence                 3344444444566778888888866665444432222     345566678888999999999999999986

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0006  Score=73.77  Aligned_cols=72  Identities=19%  Similarity=0.393  Sum_probs=58.8

Q ss_pred             CCCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC-----CcchHHHHHHHHHHHHH
Q 048793          270 DANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN-----LVTNTALKNLIALWCRE  342 (683)
Q Consensus       270 ~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~-----l~pn~~l~~~i~~~~~~  342 (683)
                      +..++.+|-|-||...+.+||++||||+||+.||++-.+. ...||.|+.++....     ..+|+.+.++|..|+..
T Consensus        78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            4567899999999999999999999999999999997664 678999998876421     22466677888888754

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.97  E-value=0.045  Score=61.41  Aligned_cols=186  Identities=13%  Similarity=0.195  Sum_probs=125.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHH
Q 048793          462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLV  541 (683)
Q Consensus       462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv  541 (683)
                      ++.++.-+... ....+.+++..|..++........... ..+||.|.+.|.+..+++++.+..+|..++.--+|-. + 
T Consensus       256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I-  331 (569)
T KOG1242|consen  256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I-  331 (569)
T ss_pred             hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H-
Confidence            44444444444 478899999999999888777777776 7899999999999999999999999999998766654 1 


Q ss_pred             hcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHH----HhcCChHHHHHHHHHHHHHHhcCCch-H
Q 048793          542 ERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCIL----LREGSDTSRESAAATLVTICRKGGSE-M  616 (683)
Q Consensus       542 ~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~l----L~~~s~~~ke~A~~aL~~L~~~~~~~-~  616 (683)
                       .-.+|.|++.+.+....+.+++..|.....-.+..  .-.+..++-+    +...+...++.++.+.+|+|+--.+. .
T Consensus       332 -~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~--~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~  408 (569)
T KOG1242|consen  332 -QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVD--APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD  408 (569)
T ss_pred             -HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeec--chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence             12467888888754446777777775532211111  1123334444    44457778899999999999865432 2


Q ss_pred             HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHH-HHHHhhh
Q 048793          617 VADIAAVPGIERVIWELMESGTARARRKAAALL-RILRRWA  656 (683)
Q Consensus       617 ~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL-~~l~~~~  656 (683)
                      +...+  .-++|-|-..+...-|.+|.-|+..| .++.+.+
T Consensus       409 lapfl--~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  409 LAPFL--PSLLPGLKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             HhhhH--HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence            22222  23444455555566799999988888 4444433

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.97  E-value=0.00045  Score=71.23  Aligned_cols=64  Identities=13%  Similarity=0.383  Sum_probs=51.0

Q ss_pred             CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCC----CcchHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN----LVTNTALKNLI  336 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~----l~pn~~l~~~i  336 (683)
                      ++-...+|++|..+|.|+.+| .|=|||||+||-+++.. ..+||.|+-.+....    +.+..+|+.++
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiV   79 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIV   79 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHH
Confidence            345678999999999999976 89999999999999998 789999987665443    44555665554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.15  Score=53.09  Aligned_cols=229  Identities=15%  Similarity=0.143  Sum_probs=156.7

Q ss_pred             HHhccCCCHHHHHHHHHHHHhhhccCchhH----HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          378 NKLATSQSMEAANDAVYELRSLSKTDSDSR----ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr----~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      .-|..+ +..++.-++..+..+..+.+.|-    ..++.+|..|.++......    |.++-..|...+..++..++.-.
T Consensus        89 rGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge----ddeVAkAAiesikrialfpaale  163 (524)
T KOG4413|consen   89 RGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE----DDEVAKAAIESIKRIALFPAALE  163 (524)
T ss_pred             hcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC----cHHHHHHHHHHHHHHHhcHHHHH
Confidence            334444 55555566666666665555332    2455789999999999888    89999999999999999888888


Q ss_pred             HHhcccCcHHHHHH--HHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHHHHHh
Q 048793          454 RIMETEGALNGVIE--VLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVAILNL  530 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~--lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~nL  530 (683)
                      .|..+ .....+-.  +--.. +.-+|......+-.+++.......-+...|.+..|..=|+. .+.-+..+++...+.|
T Consensus       164 aiFeS-ellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  164 AIFES-ELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             Hhccc-ccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88876 55544322  22222 34567777777777776654433444447888888777764 3444678888889999


Q ss_pred             cCCcchhHHHHhcCchHHHHHHhcc---CchhHHHHHHHHHHcCCcHHHH--------HH-cCchHHHHHHHhcCChHHH
Q 048793          531 AGDRETVGRLVERGIVEIVAEAMDV---LPEESVTILEAVVKRGGLTAIV--------AA-YNTIKKLCILLREGSDTSR  598 (683)
Q Consensus       531 s~~~~n~~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~~l~~~~e~~--------~~-~g~v~~Lv~lL~~~s~~~k  598 (683)
                      ...+-++..+.+.|.|..+-.++..   ++-..-+++.....+-++....        .. +-.+.....++...++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            9888899999999999999999873   2333555666665544433221        11 1334555566778899999


Q ss_pred             HHHHHHHHHHHhcCC
Q 048793          599 ESAAATLVTICRKGG  613 (683)
Q Consensus       599 e~A~~aL~~L~~~~~  613 (683)
                      +.|+.+|..|.++..
T Consensus       322 eaAiDalGilGSnte  336 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE  336 (524)
T ss_pred             HHHHHHHHhccCCcc
Confidence            999999988877543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.90  E-value=0.0077  Score=60.90  Aligned_cols=182  Identities=15%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCc---chhhHHhh-hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCch
Q 048793          471 SGATWEAKGNAAATIFSLSGVH---AHRKTLGR-KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIV  546 (683)
Q Consensus       471 ~~~~~~~~~~Aa~~L~~Ls~~~---~~~~~i~~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V  546 (683)
                      ++.+.+.|..|...|..+....   .....+.. -...+..++..+.+....+.+.|+.++..|+..-.+.-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            3347999999999999988765   33333322 1234456667777666678899999999998765544332334578


Q ss_pred             HHHHHHhccCchh----HHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCC--chHHHH
Q 048793          547 EIVAEAMDVLPEE----SVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGG--SEMVAD  619 (683)
Q Consensus       547 ~~Lv~lL~~~~~~----~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~--~~~~~~  619 (683)
                      |.|++.+.+....    +..++..+...++ ....     ..+.+...+.+.++..|..++..|..+....+  ......
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            8999998865332    4555555555443 1211     13445555678899999999998888876555  111111


Q ss_pred             HHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793          620 IAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       620 ~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      -..-..+++.+..++.++++.+|+.|..++..|.+..+
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            11113467888899999999999999999999987543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.12  Score=55.89  Aligned_cols=241  Identities=16%  Similarity=0.112  Sum_probs=160.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-----h----hHHHHHHhCcHHHHHHhhCCC--CCCCChhhHHH
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-----D----SRACIAEAGAIALLARHLGPD--TASRLPNLQVN  437 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-----~----nr~~i~~~G~Ip~Lv~lL~s~--~~~~d~~~qe~  437 (683)
                      .-.+|+.|+.+|.+. +.++....+.-|..|+..+.     +    --..+++.++++.|+.-+..-  ...+......+
T Consensus       123 eln~V~slL~LLgHe-NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~  201 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHE-NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHN  201 (536)
T ss_pred             HhccHHHHHHHhcCC-CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHH
Confidence            346788999999998 99999999999998886542     1    234566779999999887653  00012334567


Q ss_pred             HHHHHHhccc-CchhHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhc-
Q 048793          438 AVTTILNLSI-LEANKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVK-  513 (683)
Q Consensus       438 A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~-  513 (683)
                      +++.+-|+.. .++....+++. |.+.-|..-+. .+.-..-+..|..+|.-+-.+ ++++...+. -.+|..|++-+. 
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~  279 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcch
Confidence            7888888875 46778888887 76555554332 222245677888888876654 558888888 777888887652 


Q ss_pred             ---CC----C-hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHH------HHH
Q 048793          514 ---GG----P-TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAI------VAA  579 (683)
Q Consensus       514 ---~~----~-~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~------~~~  579 (683)
                         .+    + .+..++-...|..+-..+.|+.+++...++....=++....-..-.++.+|-....++++      ...
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence               11    1 235577778888888889999999998888766666654233366678888654433332      233


Q ss_pred             cCchHHHHHHHh-c--------CC-hHHHHHHHHHHHHHHhcC
Q 048793          580 YNTIKKLCILLR-E--------GS-DTSRESAAATLVTICRKG  612 (683)
Q Consensus       580 ~g~v~~Lv~lL~-~--------~s-~~~ke~A~~aL~~L~~~~  612 (683)
                      ++|...+..+.. .        .+ ....|+.+.+||++-.+.
T Consensus       360 ~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~  402 (536)
T KOG2734|consen  360 ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL  402 (536)
T ss_pred             HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence            455555555432 1        22 234578888888887654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=96.84  E-value=0.031  Score=62.84  Aligned_cols=232  Identities=15%  Similarity=0.126  Sum_probs=157.5

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHh-ccc-CchhHH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILN-LSI-LEANKT  453 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~n-Ls~-~~~~k~  453 (683)
                      ++..|.+. +++....|.....+++.+.+.++.-+.+.|++|.|..+++...+  ..+.+ +-.++++| +.. .++...
T Consensus        14 ~l~~L~~~-dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~--s~~~k-~~~~~llns~f~~eqd~v~   89 (678)
T KOG1293|consen   14 LLYRLLHL-DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDG--STELK-NGFAVLLNSLFLGEQDKVD   89 (678)
T ss_pred             HHHhhhcC-CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCC--chhhh-hhHHHHHHhHHhhccchHH
Confidence            33445555 78888999999999999988889889999999999999988721  23333 34455555 443 456677


Q ss_pred             HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhh--hcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGR--KTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~--~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      .+... +.++.|..+|.+.++...+....+.+..+-....+......  ....+..+..++..........-+....++|
T Consensus        90 svL~~-~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s  168 (678)
T KOG1293|consen   90 SVLRI-IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS  168 (678)
T ss_pred             HHHHH-hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc
Confidence            88887 89999999998873377888888888888766543333221  1234555555544244444455566677788


Q ss_pred             CCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHH---H-cCCcHHHHHH------cCchH---HHHHHHhcCChHH
Q 048793          532 GDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVV---K-RGGLTAIVAA------YNTIK---KLCILLREGSDTS  597 (683)
Q Consensus       532 ~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~---~-l~~~~e~~~~------~g~v~---~Lv~lL~~~s~~~  597 (683)
                      ...+++..+..+|+.+.+.-++.. .......|+--+.   . +..++++...      .+++.   .+.++++++....
T Consensus       169 ~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~  248 (678)
T KOG1293|consen  169 STKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSE  248 (678)
T ss_pred             ccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccH
Confidence            888888888999998887777653 2334556666665   2 2234443322      23333   4555677888888


Q ss_pred             HHHHHHHHHHHHhcC
Q 048793          598 RESAAATLVTICRKG  612 (683)
Q Consensus       598 ke~A~~aL~~L~~~~  612 (683)
                      +-.++..|..++..+
T Consensus       249 ~l~sl~cl~~~~~~s  263 (678)
T KOG1293|consen  249 RLRSLECLVPYLRKS  263 (678)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            888999999998766

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.75  E-value=0.091  Score=56.38  Aligned_cols=184  Identities=18%  Similarity=0.176  Sum_probs=119.9

Q ss_pred             CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc
Q 048793          414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA  493 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~  493 (683)
                      -.++.++.++.+.    +..++..|...+..+          ... -+++.+..+|... +..+|..|+.+|..+     
T Consensus        43 ~~~~~~~~~l~~~----~~~vr~~aa~~l~~~----------~~~-~av~~l~~~l~d~-~~~vr~~a~~aLg~~-----  101 (335)
T COG1413          43 EAADELLKLLEDE----DLLVRLSAAVALGEL----------GSE-EAVPLLRELLSDE-DPRVRDAAADALGEL-----  101 (335)
T ss_pred             hhHHHHHHHHcCC----CHHHHHHHHHHHhhh----------chH-HHHHHHHHHhcCC-CHHHHHHHHHHHHcc-----
Confidence            4678888999988    888888888775433          222 5788899999887 688888888866544     


Q ss_pred             hhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchh-------------
Q 048793          494 HRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEE-------------  559 (683)
Q Consensus       494 ~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~-------------  559 (683)
                           +. ..+++.|+.+|. +.+..++..|+++|..+-..          .++.+|+..+.+....             
T Consensus       102 -----~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~  165 (335)
T COG1413         102 -----GD-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDV  165 (335)
T ss_pred             -----CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHH
Confidence                 33 568889999988 46777889999999886432          2377777777643211             


Q ss_pred             HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCH
Q 048793          560 SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTA  639 (683)
Q Consensus       560 ~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~  639 (683)
                      ...++..|..+.       ....++.+...+......++..|+.+|..+....           ..+.+.+...+.+.+.
T Consensus       166 r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~~~  227 (335)
T COG1413         166 RAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSDESL  227 (335)
T ss_pred             HHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCCCH
Confidence            111111111111       1123667777777778888888888877776642           1334555556666666


Q ss_pred             HHHHHHHHHHHHH
Q 048793          640 RARRKAAALLRIL  652 (683)
Q Consensus       640 ~~k~kA~~lL~~l  652 (683)
                      .++.++...|..+
T Consensus       228 ~vr~~~~~~l~~~  240 (335)
T COG1413         228 EVRKAALLALGEI  240 (335)
T ss_pred             HHHHHHHHHhccc
Confidence            6666555555443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.75  E-value=0.0024  Score=45.56  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      +++..+.+ .|++++|+.+|.+++++.++.|+++|.||+.
T Consensus         3 ~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            46777777 8999999999998889999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.65  E-value=0.21  Score=54.42  Aligned_cols=251  Identities=13%  Similarity=0.031  Sum_probs=168.1

Q ss_pred             HHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcC-C
Q 048793          395 ELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG-A  473 (683)
Q Consensus       395 ~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~-~  473 (683)
                      .|..+-+..+.-|..+.-.-..+.+..++-++    +.+++..+..++.-+..+.+.-..+.+. +.--.++.-|... .
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~----~~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~   80 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD----SKEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNK   80 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCC
Confidence            34444445554555555445556666566666    7889999999999888888887778776 6555666667643 2


Q ss_pred             CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHh
Q 048793          474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM  553 (683)
Q Consensus       474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL  553 (683)
                      +...|+.|...++.+...+.+...+-  .|.+.++|.+..+.+++.+..|+.+|..|+..  |-..++++|++..|++.+
T Consensus        81 ~~~ER~QALkliR~~l~~~~~~~~~~--~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l  156 (371)
T PF14664_consen   81 NDVEREQALKLIRAFLEIKKGPKEIP--RGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRAL  156 (371)
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcccCC--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHH
Confidence            46789999999999887766555553  58999999999988888999999999999885  345567899999999999


Q ss_pred             ccCc-hhHHHHHHHHHHcCCcHHHHHHc--C-chHHHHHHHhcC-------Ch--HHHHHHHHHHHHHHhcCCchHHHHH
Q 048793          554 DVLP-EESVTILEAVVKRGGLTAIVAAY--N-TIKKLCILLREG-------SD--TSRESAAATLVTICRKGGSEMVADI  620 (683)
Q Consensus       554 ~~~~-~~~~~aL~~L~~l~~~~e~~~~~--g-~v~~Lv~lL~~~-------s~--~~ke~A~~aL~~L~~~~~~~~~~~~  620 (683)
                      .++. +..+..+.++..+-.++..+.-.  | .++.+..-....       +.  ..-.++..++..+-+.=+.-  ...
T Consensus       157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL--l~l  234 (371)
T PF14664_consen  157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL--LYL  234 (371)
T ss_pred             HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--eee
Confidence            8642 45677777777766666665533  1 234444433211       11  12234445554444322210  000


Q ss_pred             H-hcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          621 A-AVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       621 ~-~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      - .....++.|+..+...++++|+..-.++.-+-+-.
T Consensus       235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            1 11246777888889999999999888777766633

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=96.59  E-value=0.025  Score=60.93  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=121.3

Q ss_pred             HHHHHHhCcHHHHHHhhCCCCCCCChh--hHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHH
Q 048793          407 RACIAEAGAIALLARHLGPDTASRLPN--LQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT  484 (683)
Q Consensus       407 r~~i~~~G~Ip~Lv~lL~s~~~~~d~~--~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~  484 (683)
                      .+.|...|++..|++++.++    +.+  ++..|...|-.+. ..+|+..|+.. | +..|+.+-+....++.....+.+
T Consensus       173 CD~iR~~~~lD~Llrmf~aP----n~et~vRve~~rlLEq~~-~aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~i  245 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAP----NLETSVRVEAARLLEQIL-VAENRDRVARI-G-LGVILNLAKEREPVELARSVAGI  245 (832)
T ss_pred             hhHhhccchHHHHHHHHhCC----chhHHHHHHHHHHHHHHH-hhhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHH
Confidence            44566679999999999988    655  4777877776653 45677777765 4 55566555544358888899999


Q ss_pred             HHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc--chhHHHHhcCchHHHHHHhccCchh-H
Q 048793          485 IFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR--ETVGRLVERGIVEIVAEAMDVLPEE-S  560 (683)
Q Consensus       485 L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~V~~Lv~lL~~~~~~-~  560 (683)
                      |.++-.+. +.+..+++ .|++.+++-..+..++....+++.||.|+..+.  +.+.+|++--+.+.|.-+-.+..+. .
T Consensus       246 l~~mFKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R  324 (832)
T KOG3678|consen  246 LEHMFKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLR  324 (832)
T ss_pred             HHHHhhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence            99998764 57888888 899999998888888999999999999998864  5789999999999988887654443 3


Q ss_pred             HHHHHHHHHcCCcHHH
Q 048793          561 VTILEAVVKRGGLTAI  576 (683)
Q Consensus       561 ~~aL~~L~~l~~~~e~  576 (683)
                      -.|.-+.+.++++.|.
T Consensus       325 ~~AClAV~vlat~KE~  340 (832)
T KOG3678|consen  325 LHACLAVAVLATNKEV  340 (832)
T ss_pred             HHHHHHHhhhhhhhhh
Confidence            3444444555556554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.56  E-value=0.31  Score=52.26  Aligned_cols=182  Identities=19%  Similarity=0.204  Sum_probs=119.5

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..+..+++.+.+. +...+..|+..+..+.           ..-++|.|..+|.+.    +..++..|+.+|.++     
T Consensus        43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~----~~~vr~~a~~aLg~~-----  101 (335)
T COG1413          43 EAADELLKLLEDE-DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDE----DPRVRDAAADALGEL-----  101 (335)
T ss_pred             hhHHHHHHHHcCC-CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCC----CHHHHHHHHHHHHcc-----
Confidence            4567788888888 8888988888754432           235789999999999    999999999977654     


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhH-----------
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSS-----------  519 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~-----------  519 (683)
                           .. +.+++.++..|.+..+..+|..++.+|..+-.           ..++.+|+.++.+.....           
T Consensus       102 -----~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~  164 (335)
T COG1413         102 -----GD-PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLD  164 (335)
T ss_pred             -----CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHH
Confidence                 22 36789999999953378999999999997743           445888898888765332           


Q ss_pred             -HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHH
Q 048793          520 -KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS  597 (683)
Q Consensus       520 -~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~  597 (683)
                       +..++.+|..+          -+.-.++.|.+.+.+. ......+...|..+....     ....+.+.+.+...+...
T Consensus       165 ~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         165 VRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHH
Confidence             22222222221          1223567777777654 234555566665544332     122345555555566666


Q ss_pred             HHHHHHHH
Q 048793          598 RESAAATL  605 (683)
Q Consensus       598 ke~A~~aL  605 (683)
                      +..++.+|
T Consensus       230 r~~~~~~l  237 (335)
T COG1413         230 RKAALLAL  237 (335)
T ss_pred             HHHHHHHh
Confidence            65555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.53  E-value=0.039  Score=55.73  Aligned_cols=187  Identities=14%  Similarity=0.114  Sum_probs=109.5

Q ss_pred             ccCCCHHHHHHHHHHHHhhhccC--chhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh-HHHH
Q 048793          381 ATSQSMEAANDAVYELRSLSKTD--SDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN-KTRI  455 (683)
Q Consensus       381 ~s~~~~~~~~~A~~~L~~La~~~--~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~-k~~I  455 (683)
                      .+. +.+.+.+|+..|+.+...+  ......+.+.  ..++.++..+.+.    ...+...|+.++..|+..-.. -...
T Consensus        17 ~~~-~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~~~~~   91 (228)
T PF12348_consen   17 SES-DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSHFEPY   91 (228)
T ss_dssp             T-S-SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             Ccc-CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence            345 8999999999999999887  3344444432  5667777777776    777889999999998865332 2223


Q ss_pred             hcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhccc-HHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793          456 METEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRV-VKGLMDLVKGGPTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       456 ~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  534 (683)
                      +.  ..++.|++.+.++ ..-.++.|..+|..+...-...      ..+ ++.+...+.+.++.++..++..|..+....
T Consensus        92 ~~--~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~  162 (228)
T PF12348_consen   92 AD--ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKW  162 (228)
T ss_dssp             HH--HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred             HH--HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            33  4788888888877 5788999999999988754311      122 455666778888889888888887765543


Q ss_pred             c-hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCC
Q 048793          535 E-TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGG  613 (683)
Q Consensus       535 ~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~  613 (683)
                      . +...+-..+.+                                 ...++.+.+.+...++.+|+.|..+++.+..+.+
T Consensus       163 ~~~~~~l~~~~~~---------------------------------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  163 GSDSSVLQKSAFL---------------------------------KQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             ----GGG--HHHH---------------------------------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             cchHhhhcccchH---------------------------------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            2 11111000000                                 0124556666777788888888888877766554


Q ss_pred             c
Q 048793          614 S  614 (683)
Q Consensus       614 ~  614 (683)
                      +
T Consensus       210 ~  210 (228)
T PF12348_consen  210 E  210 (228)
T ss_dssp             H
T ss_pred             H
Confidence            4

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.044  Score=60.25  Aligned_cols=257  Identities=12%  Similarity=0.107  Sum_probs=163.2

Q ss_pred             HHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHH
Q 048793          390 NDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEV  468 (683)
Q Consensus       390 ~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~l  468 (683)
                      ..++..|..+++.-..-|.-+.+..+.++|+++|+.+    +..+.-.+...++|+... ..-+..+... |.|..|+.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P----eimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~  481 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP----EIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc----cceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHH
Confidence            3444455555555455677888889999999999987    777777788899998754 4456677776 999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcCcchh--hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC-Ccch---hHHHHh
Q 048793          469 LRSGATWEAKGNAAATIFSLSGVHAHR--KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG-DRET---VGRLVE  542 (683)
Q Consensus       469 L~~~~~~~~~~~Aa~~L~~Ls~~~~~~--~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n---~~~iv~  542 (683)
                      +.+. +...+.+..|+|++|..+.++-  -...+ .-++..++.+.+++.-.+....+..|.|+.- ...|   +....+
T Consensus       482 v~sK-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K  559 (743)
T COG5369         482 VMSK-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK  559 (743)
T ss_pred             hhcc-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEe
Confidence            9977 6789999999999998775543  33344 4568999999998888899999999999844 2223   333333


Q ss_pred             cCch----HHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHc----C-chHHHHHHHh---------------------
Q 048793          543 RGIV----EIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAY----N-TIKKLCILLR---------------------  591 (683)
Q Consensus       543 aG~V----~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~----g-~v~~Lv~lL~---------------------  591 (683)
                      +.--    +.|++.+... +-.....+-+|.+++.+.+.....    . -+..+...|.                     
T Consensus       560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~  639 (743)
T COG5369         560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI  639 (743)
T ss_pred             cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence            3322    3344444332 323555566666654322211100    0 0000101100                     


Q ss_pred             --------c---------------------CChH---HHHHHHHHHHHHH-hcCCc------hHHHHHHhcCCcHHHHHH
Q 048793          592 --------E---------------------GSDT---SRESAAATLVTIC-RKGGS------EMVADIAAVPGIERVIWE  632 (683)
Q Consensus       592 --------~---------------------~s~~---~ke~A~~aL~~L~-~~~~~------~~~~~~~~~~G~~~~L~~  632 (683)
                              .                     ...+   .--...|...++. ..++.      ....+.+.+.|+-..|+.
T Consensus       640 s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k  719 (743)
T COG5369         640 SYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK  719 (743)
T ss_pred             ceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence                    0                     0001   1111222222221 11111      134566888999999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHH
Q 048793          633 LMESGTARARRKAAALLRILR  653 (683)
Q Consensus       633 Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      +..+.++.+++|+..+|.+++
T Consensus       720 ~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         720 IQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HhccCcHHHHHHHHHHHHhhh
Confidence            999999999999999999875

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.41  E-value=0.068  Score=50.21  Aligned_cols=107  Identities=16%  Similarity=0.275  Sum_probs=82.5

Q ss_pred             CCccchhhhcHHHHHHHHhhhhHHHHHHHhcCCCCCChhHhhhHHHHHHHHHHHHHHHHHhcccchHHHHHhhHHHHHHH
Q 048793           45 KPLQFLLQRSCLSIIRKVKLLSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF  124 (683)
Q Consensus        45 ~~~~~~~k~~~~~l~r~i~lL~~lleEl~~~~~~~~~~~~~~~l~~L~~~l~~a~~ll~~c~~~sklyl~~~~~~~~~~~  124 (683)
                      .+.....|-.+..|..-++.|.|+++||...+.. ++.+...-++.|...|++++.|++.|++.+ -|-+..-..+..++
T Consensus        26 ~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~e-ld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki  103 (147)
T PF05659_consen   26 SKKSLSFKSILKRLESTLESIIPIIKEIDKLNVE-LDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKI  103 (147)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhh-cCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHH
Confidence            3444566777778888889999999999887653 555558889999999999999999999886 45556777789999


Q ss_pred             HHHHHHHHHHHhc-CCCccccchhhHHHHHHHH
Q 048793          125 HELTIDLSTLLDI-MPLQELRLSQDVEDVVVLI  156 (683)
Q Consensus       125 ~~~~~~l~~~l~~-~p~~~~~~s~ev~e~v~~~  156 (683)
                      +++..+|.+.++. +|+.   ...|+++....+
T Consensus       104 ~~le~~l~~f~~v~~q~~---~~~D~~~l~~~~  133 (147)
T PF05659_consen  104 EELEESLRRFIQVDLQLH---QLRDIKELLAKM  133 (147)
T ss_pred             HHHHHHHHHHhcchhHHH---HHHHHHHHHHHH
Confidence            9999999999986 6764   334555444443

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>TIGR02270 conserved hypothetical protein

Probab=96.34  E-value=0.25  Score=54.50  Aligned_cols=179  Identities=15%  Similarity=0.042  Sum_probs=115.2

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ..+.|+.+|++. ++..+..++..+...            .....+.|+.+|++.    ++.++..|+.+|..+-     
T Consensus       118 a~~~L~~~L~~~-~p~vR~aal~al~~r------------~~~~~~~L~~~L~d~----d~~Vra~A~raLG~l~-----  175 (410)
T TIGR02270       118 AEPWLEPLLAAS-EPPGRAIGLAALGAH------------RHDPGPALEAALTHE----DALVRAAALRALGELP-----  175 (410)
T ss_pred             HHHHHHHHhcCC-ChHHHHHHHHHHHhh------------ccChHHHHHHHhcCC----CHHHHHHHHHHHHhhc-----
Confidence            456688899888 888888777555441            123567899999988    9999999999997753     


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                           .. .+++.|...+.+. ++.+|..|+.++..+          +. .+++.+|............. ++.++..+.
T Consensus       176 -----~~-~a~~~L~~al~d~-~~~VR~aA~~al~~l----------G~-~~A~~~l~~~~~~~g~~~~~-~l~~~lal~  236 (410)
T TIGR02270       176 -----RR-LSESTLRLYLRDS-DPEVRFAALEAGLLA----------GS-RLAWGVCRRFQVLEGGPHRQ-RLLVLLAVA  236 (410)
T ss_pred             -----cc-cchHHHHHHHcCC-CHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHhccCccHHH-HHHHHHHhC
Confidence                 22 6778888888877 799999999999544          33 45566666644433322322 233333332


Q ss_pred             CCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          532 GDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       532 ~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      ..+         .+++.|..++.+ +.....++..|..+..       ...++.|+..+.  .+..+..|-.++..|..
T Consensus       237 ~~~---------~a~~~L~~ll~d-~~vr~~a~~AlG~lg~-------p~av~~L~~~l~--d~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       237 GGP---------DAQAWLRELLQA-AATRREALRAVGLVGD-------VEAAPWCLEAMR--EPPWARLAGEAFSLITG  296 (410)
T ss_pred             Cch---------hHHHHHHHHhcC-hhhHHHHHHHHHHcCC-------cchHHHHHHHhc--CcHHHHHHHHHHHHhhC
Confidence            211         566777787774 3355556655554322       124666666664  33477777777777664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.11  Score=57.70  Aligned_cols=232  Identities=14%  Similarity=0.126  Sum_probs=148.3

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhc---cCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSK---TDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~---~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      ....+-|..+|+.+ +.+++.-+-..|..+-.   .++..   +--...++.|+.-+.+.    ++.+|..|+..+....
T Consensus       207 ~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss----~~~iq~~al~Wi~efV  278 (675)
T KOG0212|consen  207 PSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSS----EPEIQLKALTWIQEFV  278 (675)
T ss_pred             hHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCC----cHHHHHHHHHHHHHHh
Confidence            33455677788777 77777444433333222   12211   11235788888888888    9999999999998875


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHH---HHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAA---TIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~---~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      .-........-+ |++..+...+.+......++.+..   .|..+......+..+.- ...|..|...+.++....+-.+
T Consensus       279 ~i~g~~~l~~~s-~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~  356 (675)
T KOG0212|consen  279 KIPGRDLLLYLS-GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAV  356 (675)
T ss_pred             cCCCcchhhhhh-hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHH
Confidence            433332223333 667777777765422234444333   34455555444444433 4578888889998888888888


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHH
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAA  602 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~  602 (683)
                      +.-+..|-....|....-.....+.|+.-|++. .++...+|..|+.+|..++...-...+..|..+......-....+.
T Consensus       357 L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~  436 (675)
T KOG0212|consen  357 LNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGN  436 (675)
T ss_pred             HHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhh
Confidence            888888877777776666678889999999865 5569999999999887665442222233444444445555566777


Q ss_pred             HHHHHHHhc
Q 048793          603 ATLVTICRK  611 (683)
Q Consensus       603 ~aL~~L~~~  611 (683)
                      -++..||..
T Consensus       437 lIIRqlC~l  445 (675)
T KOG0212|consen  437 LIIRQLCLL  445 (675)
T ss_pred             HHHHHHHHH
Confidence            778888864

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.22  E-value=0.0093  Score=45.87  Aligned_cols=55  Identities=18%  Similarity=0.066  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          475 WEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       475 ~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      +.+|..|+++|.+++........-.. ..+++.|+.+|.++++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46789999999998866554444333 68999999999998889999999999875

...

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.46  Score=52.92  Aligned_cols=269  Identities=14%  Similarity=0.118  Sum_probs=167.1

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +.||.|-+.+... ++..|.--+.=|..+-...  .++.+.= ....+.|..+|+..    +.+++..+=.+|.++-..-
T Consensus       167 ~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~----s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  167 EFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDS----SDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHH
Confidence            3455555555445 6777777776666653322  2333321 24566677888887    8888877777666653322


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH---
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV---  525 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~---  525 (683)
                      .++...+..+..++.++.-+.++ .++.+..|..-|.............-- .|++..+...+.+.... .+..|..   
T Consensus       240 ~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~-s~il~~iLpc~s~~e~~~i~~~a~~~n~  317 (675)
T KOG0212|consen  240 RSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYL-SGILTAILPCLSDTEEMSIKEYAQMVNG  317 (675)
T ss_pred             hcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhh-hhhhhhcccCCCCCccccHHHHHHHHHH
Confidence            23333334346788899888887 689998888888877766554444444 78888888888776553 4433322   


Q ss_pred             HHHHhcCCcchhHHHHhcC-chHHHHHHhccCch-hHHHHHHHHHH---cCCcHHHHHHcCchHHHHHHHhcCChHHHHH
Q 048793          526 AILNLAGDRETVGRLVERG-IVEIVAEAMDVLPE-ESVTILEAVVK---RGGLTAIVAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG-~V~~Lv~lL~~~~~-~~~~aL~~L~~---l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      .|..++........ ++-| ++..|.+.+.++.+ ....+|.-+..   -..+.-.+....-.+.|.+-|...|+.+-..
T Consensus       318 ~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~  396 (675)
T KOG0212|consen  318 LLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL  396 (675)
T ss_pred             HHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence            24445554444433 5544 56777777775533 23334443332   2222222222234567778888899999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +...|.++|....+...+      .++..|.++....+.-.+..+.-++|.|.-.
T Consensus       397 ~L~lla~i~~s~~~~~~~------~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  397 ALSLLASICSSSNSPNLR------KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHHHhcCcccccHH------HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            999999999876553332      3455666777777777888888888887653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.55  Score=48.75  Aligned_cols=170  Identities=15%  Similarity=0.063  Sum_probs=113.6

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..++.+..++... .+  ...|+.+|.+++.... -|+.+.+. .+..+++.+...    ....-...+.+|.||+.+++
T Consensus        44 ~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~-l~~~ll~~-~~k~l~~~~~~p----~~~lad~~cmlL~NLs~~~~  114 (353)
T KOG2973|consen   44 ALLKDLTQLLKDL-DP--AEPAATALVNLSQKEE-LRKKLLQD-LLKVLMDMLTDP----QSPLADLICMLLSNLSRDDD  114 (353)
T ss_pred             hhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHH-HHHHHHHH-HHHHHHHHhcCc----ccchHHHHHHHHHHhccCch
Confidence            3466677777655 44  6788899999988654 66666666 777788877766    45566778899999999877


Q ss_pred             hHHHHh---c---ccCcHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCcchhhHHhhhcccHH-HHHHhhcCCChhHH-H
Q 048793          451 NKTRIM---E---TEGALNGVIEVLRSGATW-EAKGNAAATIFSLSGVHAHRKTLGRKTRVVK-GLMDLVKGGPTSSK-R  521 (683)
Q Consensus       451 ~k~~I~---~---~~G~I~~Lv~lL~~~~~~-~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~-~Lv~lL~~~~~~~~-~  521 (683)
                      ....+.   .   ..|.+.....+..++.+. .-..+-+-++.+|+.....|..+.. ..-++ .-..-+.+.+..++ .
T Consensus       115 ~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~ft~~~s~vRr~  193 (353)
T KOG2973|consen  115 EVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPFTSEDSQVRRG  193 (353)
T ss_pred             HHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcccccchhhhcc
Confidence            654333   1   126677777777766432 2235677788899999999988876 34221 11112233333443 6


Q ss_pred             HHHHHHHHhcCCcchhHHHHhc--CchHHHH
Q 048793          522 DALVAILNLAGDRETVGRLVER--GIVEIVA  550 (683)
Q Consensus       522 ~A~~aL~nLs~~~~n~~~iv~a--G~V~~Lv  550 (683)
                      ..+.+|.|.|....+...+...  .+.|.|+
T Consensus       194 GvagtlkN~cFd~~~h~~lL~e~~~lLp~iL  224 (353)
T KOG2973|consen  194 GVAGTLKNCCFDAKLHEVLLDESINLLPAIL  224 (353)
T ss_pred             chHHHHHhhhccchhHHHHhcchHHHHHHHH
Confidence            6789999999999998888773  3344443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.10  E-value=0.0043  Score=64.22  Aligned_cols=54  Identities=15%  Similarity=0.423  Sum_probs=43.7

Q ss_pred             CCCcccccccccCCCC---ce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          273 VPADFRCPISLELMRN---PV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       273 ~p~~f~CPis~~~m~d---Pv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      -...|.||||+..|..   -| +.+|||.|...+|++--  ....||.|++++...++++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            4578999999999954   33 44999999999998883  3457999999999887663

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.07  E-value=0.63  Score=52.13  Aligned_cols=258  Identities=15%  Similarity=0.145  Sum_probs=158.9

Q ss_pred             HHHHHhhhccCchhHHHHHHhCcHHHHHHhhC--C----CCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHH
Q 048793          393 VYELRSLSKTDSDSRACIAEAGAIALLARHLG--P----DTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGV  465 (683)
Q Consensus       393 ~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~--s----~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~L  465 (683)
                      +.+|+.++.+.. +-..+....++..|..+-.  .    .....+..+...|+.+|.|+-.+ +..|...++. |..+.+
T Consensus         2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDL-GLAEKL   79 (446)
T ss_pred             HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHH
Confidence            456666666443 5566665556666665541  1    11223788999999999998765 4567666676 999999


Q ss_pred             HHHHhcC----CCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcC--------C---------ChhHHHHH
Q 048793          466 IEVLRSG----ATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKG--------G---------PTSSKRDA  523 (683)
Q Consensus       466 v~lL~~~----~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~--------~---------~~~~~~~A  523 (683)
                      +..|+..    .+.+..-...++||-++. ..+.+..+....+++..++..|..        .         .......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999875    247888889999998875 455777777767888888876531        0         12346789


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHHHHhcc-------C---chhHHHHHHHHHHcCC-cHHHH--------------H
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDV-------L---PEESVTILEAVVKRGG-LTAIV--------------A  578 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-------~---~~~~~~aL~~L~~l~~-~~e~~--------------~  578 (683)
                      +.++||+..+......--..+.++.|+.+|..       .   ......++..|.++.- +....              .
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            99999997765443332334556666655431       1   1124455555555421 11110              0


Q ss_pred             HcCchHHHHHHHhc----CC----hHHHHHHHHHHHHHHhcCCchHHHHHHhc----------------CCcHHHHHHHh
Q 048793          579 AYNTIKKLCILLRE----GS----DTSRESAAATLVTICRKGGSEMVADIAAV----------------PGIERVIWELM  634 (683)
Q Consensus       579 ~~g~v~~Lv~lL~~----~s----~~~ke~A~~aL~~L~~~~~~~~~~~~~~~----------------~G~~~~L~~Ll  634 (683)
                      ....+..|+.+|..    ..    ...----+.+|..+|..+  ...+..++.                ..+--.|+.|+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm  317 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM  317 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence            00125566666542    21    122333455566666643  223443432                34666788888


Q ss_pred             hcCCHHHHHHHHHHHHHHHh
Q 048793          635 ESGTARARRKAAALLRILRR  654 (683)
Q Consensus       635 ~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .+..+.+|.-++.+|-.|.+
T Consensus       318 t~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  318 TSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CCCCchHHHHHHHHHHHHHh
Confidence            88889999999999988876

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=1.1  Score=48.70  Aligned_cols=237  Identities=16%  Similarity=0.100  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC------chh----HHHHhcc
Q 048793          389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL------EAN----KTRIMET  458 (683)
Q Consensus       389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~------~~~----k~~I~~~  458 (683)
                      ....+..+..+|.-. +---.+++.++++.|+.||.+.    +.++....+..|..|...      ++.    -..+++.
T Consensus       101 Lhd~IQ~mhvlAt~P-dLYp~lveln~V~slL~LLgHe----NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg  175 (536)
T KOG2734|consen  101 LHDIIQEMHVLATMP-DLYPILVELNAVQSLLELLGHE----NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG  175 (536)
T ss_pred             HHHHHHHHHhhhcCh-HHHHHHHHhccHHHHHHHhcCC----CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence            345667777777643 4556788999999999999999    999988888888888632      122    2345565


Q ss_pred             cCcHHHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCC-C-hhHHHHHHHHHHHh
Q 048793          459 EGALNGVIEVLRSG-----ATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGG-P-TSSKRDALVAILNL  530 (683)
Q Consensus       459 ~G~I~~Lv~lL~~~-----~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~-~-~~~~~~A~~aL~nL  530 (683)
                       ++++.||+-+..=     .......++.+.+-|+...+ +.+..+++ .|.+.-|..-+... . ...+..|..+|.-+
T Consensus       176 -~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLail  253 (536)
T KOG2734|consen  176 -QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAIL  253 (536)
T ss_pred             -cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence             8899998877631     01334567777888887765 46677777 68888877755443 2 34667788888877


Q ss_pred             cCCc-chhHHHHhcCchHHHHHHhc----cC------chhHHH---HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChH
Q 048793          531 AGDR-ETVGRLVERGIVEIVAEAMD----VL------PEESVT---ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDT  596 (683)
Q Consensus       531 s~~~-~n~~~iv~aG~V~~Lv~lL~----~~------~~~~~~---aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~  596 (683)
                      -.+. +|+.....-.+|..|++-+.    .+      .+..+.   +|+.+.....+.+-.....++. |..++......
T Consensus       254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq-Lm~Lmlr~Kk~  332 (536)
T KOG2734|consen  254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ-LMNLMLREKKV  332 (536)
T ss_pred             hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH-HHHHHHHHHHH
Confidence            6654 58888888999999998775    11      122333   3333333333333333323343 44555444666


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHH
Q 048793          597 SRESAAATLVTICRKGGSEMVADIAAVPGIERVIWEL  633 (683)
Q Consensus       597 ~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~L  633 (683)
                      .+..|..+|-..-.+........-+.+.++...+..+
T Consensus       333 sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  333 SRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             hhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence            7778888887776654422222223344444444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.00  E-value=0.3  Score=50.80  Aligned_cols=221  Identities=13%  Similarity=0.096  Sum_probs=152.6

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLM  509 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv  509 (683)
                      ++-++--|+.+|.+|....+.|..+.....+-..+++++++.. ..+.+-++.-+++-|+........|-...+.|.-|+
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            5556778999999999998888877655457778999998632 378889999999999998887766666567889999


Q ss_pred             HhhcCCC-hhHHHHHHHHHHHhcCCc--chhHHHHhcCchHHHHHHhccC----chh---HHHHHHHHHH----cCCcHH
Q 048793          510 DLVKGGP-TSSKRDALVAILNLAGDR--ETVGRLVERGIVEIVAEAMDVL----PEE---SVTILEAVVK----RGGLTA  575 (683)
Q Consensus       510 ~lL~~~~-~~~~~~A~~aL~nLs~~~--~n~~~iv~aG~V~~Lv~lL~~~----~~~---~~~aL~~L~~----l~~~~e  575 (683)
                      .+.+... ..+.+-++.++.|++.-.  +....+.-.|-+..-++.|.+.    ++.   .+..-..|.+    ++....
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9988654 457788999999998832  3455566666666667766532    221   2222222221    111111


Q ss_pred             HHHH-----------------------------cCchHHHHHHHhcCChH-HHHHHHHHHHHHHhcCCchHHHHHHhcCC
Q 048793          576 IVAA-----------------------------YNTIKKLCILLREGSDT-SRESAAATLVTICRKGGSEMVADIAAVPG  625 (683)
Q Consensus       576 ~~~~-----------------------------~g~v~~Lv~lL~~~s~~-~ke~A~~aL~~L~~~~~~~~~~~~~~~~G  625 (683)
                      -..+                             ..-+..|.++++...+. .-..|+.=+.++.+..++  ...++...|
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE--~~~vl~Kyg  399 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE--INAVLSKYG  399 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--HHHHHHHhh
Confidence            1110                             11244556666655444 335567777777776654  466788899


Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          626 IERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       626 ~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      +-..+.+|+.+.++++|-.|...++.+=
T Consensus       400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999998887763

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.19  Score=56.83  Aligned_cols=266  Identities=11%  Similarity=0.066  Sum_probs=153.1

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      -.+|.++++.++. ++..|..|+.++..+.-..  +...+... -.++.|..+-...    ++++|.+.+.+|.-|-...
T Consensus       174 ~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~----~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  174 IMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDE----DPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             HhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHHHHhc
Confidence            4678899999999 9999999999987765533  23333332 4566666666666    9999999999988775432


Q ss_pred             hhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhh-cccHHHHHHh----------hcC-CC
Q 048793          450 ANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRK-TRVVKGLMDL----------VKG-GP  516 (683)
Q Consensus       450 ~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~-~G~i~~Lv~l----------L~~-~~  516 (683)
                      ..  +++- -.+.++-++..-+.. +.++.-.||.....++..+-.+..+... ...||.|+.=          |++ ++
T Consensus       247 ~d--kl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee  323 (885)
T KOG2023|consen  247 PD--KLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE  323 (885)
T ss_pred             HH--hcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence            22  2221 125566666655555 6778888999999999877444444321 2456665542          220 00


Q ss_pred             ---------------------------------------------hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHH
Q 048793          517 ---------------------------------------------TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAE  551 (683)
Q Consensus       517 ---------------------------------------------~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~  551 (683)
                                                                   -..++..+.+|--|+.       +.....++.++.
T Consensus       324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~P  396 (885)
T KOG2023|consen  324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLP  396 (885)
T ss_pred             cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHH
Confidence                                                         0112222222222211       122334555555


Q ss_pred             HhccC--ch---hHHHHHHHHHHcC-CcHHHHHHc--CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhc
Q 048793          552 AMDVL--PE---ESVTILEAVVKRG-GLTAIVAAY--NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAV  623 (683)
Q Consensus       552 lL~~~--~~---~~~~aL~~L~~l~-~~~e~~~~~--g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~  623 (683)
                      +|...  .+   ..+.++-+|..++ |+-.+....  .-+|.|+.+|....+-+|.-.+|+|..-+..--.....+.+  
T Consensus       397 lLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--  474 (885)
T KOG2023|consen  397 LLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--  474 (885)
T ss_pred             HHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--
Confidence            55421  11   1333333333322 222332221  13677888888899999999999976654421111111111  


Q ss_pred             CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          624 PGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       624 ~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      ..++..|..-+-+++.++++.|.+.+..+-+.
T Consensus       475 ~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  475 KPVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            12333344446678999999999999888763

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=95.91  E-value=0.0081  Score=50.23  Aligned_cols=48  Identities=21%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             CcccccccccCCCC-ceec-CCccccchhhHHHHHhc--CCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRN-PVVV-ATGQTYDRQSISLWIES--GHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~d-Pv~~-~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~  322 (683)
                      -+-.||.|...-.| |++. .|||.|-..||.+|++.  +..+||.||++..
T Consensus        31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34457777655545 6555 99999999999999985  4579999998754

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.83  E-value=0.0039  Score=67.51  Aligned_cols=51  Identities=18%  Similarity=0.316  Sum_probs=43.9

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhc----CCCCCCCCCCccCCCC
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIES----GHNTCPKTGQTLAHTN  325 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~~~  325 (683)
                      ++..|-+|.++-.||+...|.|+|||-||.++...    .+-+||.|..+|+.+.
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            45789999999999999999999999999998752    3469999998887653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.0041  Score=71.37  Aligned_cols=47  Identities=28%  Similarity=0.588  Sum_probs=42.1

Q ss_pred             CCcccccccccCCCC-----ceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          274 PADFRCPISLELMRN-----PVVVATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       274 p~~f~CPis~~~m~d-----Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      ..+-.|+||.|.|..     |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            346789999999999     788999999999999999998 78999999743

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0053  Score=62.57  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=43.2

Q ss_pred             cccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793          278 RCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT  324 (683)
Q Consensus       278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~  324 (683)
                      .|+||.+-|.-||..+|+|.||--||+.-...+..+||+|+.++++.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999998877788999999998765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.84  Score=47.68  Aligned_cols=233  Identities=15%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHH--HHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALL--ARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~L--v~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      +.+..+.++..+... |.++...|...|..++.... .-..+.+......+  +.+--..    +.-++...+..+..+.
T Consensus       126 NaeilklildcIgge-ddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc----ndiaRvRVleLIieif  199 (524)
T KOG4413|consen  126 NAEILKLILDCIGGE-DDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC----NDIARVRVLELIIEIF  199 (524)
T ss_pred             hhhHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh----hhHHHHHHHHHHHHHH
Confidence            556778888888877 88888999999998887543 55556555444332  2222233    4445555666666654


Q ss_pred             -cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHHH
Q 048793          447 -ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDA  523 (683)
Q Consensus       447 -~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~A  523 (683)
                       ..++.......+ |.+..|..=|+...+.-++.++......|+..+..+..+.. .|.|..+-.++...+  |-.+-.+
T Consensus       200 SiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra  277 (524)
T KOG4413|consen  200 SISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA  277 (524)
T ss_pred             hcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence             455555555566 88888877777534677889999999999999999999888 799999999886433  2233223


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHH-------HHhc-cCchhHHHHHHHHHHcCCcHHHHHHc--CchHHHHHHHh--
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVA-------EAMD-VLPEESVTILEAVVKRGGLTAIVAAY--NTIKKLCILLR--  591 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv-------~lL~-~~~~~~~~aL~~L~~l~~~~e~~~~~--g~v~~Lv~lL~--  591 (683)
                      +.....+- ..++.-.+.+...+..++       +++. .+++..+.|+-.+..+.++.++..-.  -+-|..-.++.  
T Consensus       278 lmgfgkff-gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllara  356 (524)
T KOG4413|consen  278 LMGFGKFF-GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARA  356 (524)
T ss_pred             HHHHHHHh-cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHH
Confidence            33322221 223333333333333333       3332 24566777777777777776665443  23334434332  


Q ss_pred             --cCChHHHHHHHHHHHHHHh
Q 048793          592 --EGSDTSRESAAATLVTICR  610 (683)
Q Consensus       592 --~~s~~~ke~A~~aL~~L~~  610 (683)
                        .....-++.+..+|.+++.
T Consensus       357 fdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  357 FDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             hcccccchHHHHHHHHHHhhc
Confidence              2223345777888888875

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.0065  Score=61.80  Aligned_cols=44  Identities=20%  Similarity=0.301  Sum_probs=39.9

Q ss_pred             ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      |.|-||.+.+.+||++.|||+||..|--+.++. +..|++|++..
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence            889999999999999999999999998888876 56899998874

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.50  E-value=0.19  Score=47.51  Aligned_cols=123  Identities=12%  Similarity=0.053  Sum_probs=97.1

Q ss_pred             HHHHhCcHHHHHHhhCCCCCC--CChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCC-CHHHHHHHHHHH
Q 048793          409 CIAEAGAIALLARHLGPDTAS--RLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA-TWEAKGNAAATI  485 (683)
Q Consensus       409 ~i~~~G~Ip~Lv~lL~s~~~~--~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~-~~~~~~~Aa~~L  485 (683)
                      .+...||++.|+.++.++...  -..++...++.++.+|-.+.-.-...... .+|..++..+.... +..+.+.|.+.|
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~-~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSD-SFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccH-HHHHHHHHHHccccccchHHHHHHHHH
Confidence            456789999999999887210  01367788999999998776555666665 79999999998653 578899999999


Q ss_pred             HHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          486 FSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       486 ~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      .++..........+...=-++.|+..|...+++...+|+..|-.|-.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99998888766666646679999999999888888888887777654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.24  Score=58.51  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhhccCchhHHHHHH----hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcH
Q 048793          387 EAANDAVYELRSLSKTDSDSRACIAE----AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGAL  462 (683)
Q Consensus       387 ~~~~~A~~~L~~La~~~~~nr~~i~~----~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I  462 (683)
                      +-..-++.+|+++.+.+++-...+..    .|-.+.+..+|.+.   .++.+|..|+.++..+..+.+--..|+.. |.+
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~---~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR---KHPKLQILALQVILLATANKECVTDLATC-NVL 1815 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc---CCchHHHHHHHHHHHHhcccHHHHHHHhh-hHH
Confidence            34566888999999888854444432    37788888888765   27889999999998888888888888887 899


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcCC
Q 048793          463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAGD  533 (683)
Q Consensus       463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~  533 (683)
                      ..|..+|.+.  +..|+.+..+|+.|++..+..+...+ .|++.-+..++...+ ++.+..|+..|..|..+
T Consensus      1816 ~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            9999999875  78999999999999999987777777 788888888886554 66778888888888654

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.46  E-value=0.0093  Score=63.09  Aligned_cols=47  Identities=17%  Similarity=0.455  Sum_probs=39.6

Q ss_pred             ccccccccCCCC--ce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          277 FRCPISLELMRN--PV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       277 f~CPis~~~m~d--Pv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      +.|-||+|-+.+  -+ ++||+|.|=..||..|+.+...+||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            799999988854  44 569999999999999999866789999986543

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=95.46  E-value=0.013  Score=58.69  Aligned_cols=46  Identities=35%  Similarity=0.489  Sum_probs=38.6

Q ss_pred             CcccccccccCCCCceec-CCccccchhhHHHHHhcC-CCCCCCCCCc
Q 048793          275 ADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESG-HNTCPKTGQT  320 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g-~~~cP~~~~~  320 (683)
                      -+++||||.....+||+- .|||.|+|..|+..+... ...||+-+-.
T Consensus       175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            457999999999999976 999999999999998642 3469987754

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.46  E-value=0.34  Score=54.37  Aligned_cols=258  Identities=16%  Similarity=0.175  Sum_probs=150.6

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|..++..|++. .+.++..|+.....+++--..  --+.+...|.|  |-.-|...    ++++.-..+.|++.+-..
T Consensus       604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~----ypEvLgsil~Ai~~I~sv  676 (975)
T COG5181         604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED----YPEVLGSILKAICSIYSV  676 (975)
T ss_pred             HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc----cHHHHHHHHHHHHHHhhh
Confidence            3567788889998 899999999877777643211  12334445543  55666666    888887777777766432


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                      -..+..---..|.+|.|.-+|++. ...+..+....+..++.......-..+=..+--.|+++|++.+.+.+.+|...+.
T Consensus       677 ~~~~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG  755 (975)
T COG5181         677 HRFRSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG  755 (975)
T ss_pred             hcccccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence            222111111128899999999988 5888899999998888765432222221234456888999889999999988888


Q ss_pred             HhcCCcchhHHHHhcCchHHHHHHhccCchhHHH-----HHHHHHHcCCcHHHHHHcCchHHHHHHHhc---CChHHHHH
Q 048793          529 NLAGDRETVGRLVERGIVEIVAEAMDVLPEESVT-----ILEAVVKRGGLTAIVAAYNTIKKLCILLRE---GSDTSRES  600 (683)
Q Consensus       529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~-----aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~---~s~~~ke~  600 (683)
                      .++.--.      -..++..|++-|. ..+...+     |+++.+..|         |-...|..+|..   ....+|. 
T Consensus       756 ~Is~aiG------PqdvL~~LlnnLk-vqeRq~RvctsvaI~iVae~c---------gpfsVlP~lm~dY~TPe~nVQn-  818 (975)
T COG5181         756 CISRAIG------PQDVLDILLNNLK-VQERQQRVCTSVAISIVAEYC---------GPFSVLPTLMSDYETPEANVQN-  818 (975)
T ss_pred             hHHhhcC------HHHHHHHHHhcch-HHHHHhhhhhhhhhhhhHhhc---------CchhhHHHHHhcccCchhHHHH-
Confidence            7764211      1122223333332 1222222     223222222         223334344443   2233333 


Q ss_pred             HHHHHHHHHhcCCc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793          601 AAATLVTICRKGGS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       601 A~~aL~~L~~~~~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~  657 (683)
                        ++|.++|.....  ......+  ..+.|+|..-+.+.++--|.-|..+++++.--..
T Consensus       819 --GvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         819 --GVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence              334445542211  1111111  3456777778888888889999999999876433

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.01  Score=60.34  Aligned_cols=47  Identities=15%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             ccccccccCC--CCce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          277 FRCPISLELM--RNPV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       277 f~CPis~~~m--~dPv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .-|-||++=+  .|.+ .+||.|.|-+.||++|+..-...||+|+.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4699997544  3555 559999999999999998656789999988754

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.013  Score=59.01  Aligned_cols=50  Identities=26%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             CCCcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793          273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLA  322 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~  322 (683)
                      -..+-.||+|++.-+.|.++ +|||.||--||..-+.. ...+||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34667899999999999988 69999999999998763 3579999997643

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.012  Score=58.06  Aligned_cols=37  Identities=27%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHh
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIE  308 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~  308 (683)
                      .|-+.-+|.+|+|..+|||+++.||.|||.+|-+++-
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            4555669999999999999999999999999999984

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.08  E-value=0.016  Score=57.33  Aligned_cols=53  Identities=15%  Similarity=0.411  Sum_probs=46.3

Q ss_pred             CcccccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          275 ADFRCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      ..|.||+|.+.+++.+    +-+|||.++..|.++.+.. ...||+|+.++...++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            6799999999988764    5599999999999998874 779999999999888775

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.03  E-value=0.066  Score=41.05  Aligned_cols=55  Identities=16%  Similarity=0.076  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793          386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL  445 (683)
Q Consensus       386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL  445 (683)
                      +.+|..|++.|..++......-.. ....++|.|+.+|.+.    +..++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~----~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD----DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS----SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC----CHHHHHHHHHHHhcC
Confidence            467899999999988766533222 3457899999999888    889999999999875

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=1.3  Score=53.54  Aligned_cols=214  Identities=14%  Similarity=0.162  Sum_probs=125.3

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcc-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMET-EGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKG  507 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~-~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~  507 (683)
                      +..+|..+..+|..++..+......... ......|...+++. +..++..++.+|..|-..  .++...+..   .|+-
T Consensus       667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~I~E  742 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---LIPE  742 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---HHHH
Confidence            7789999999999988764333222211 01223333334433 345666666666655433  345555543   4555


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcC------chHHHHHHhccC--ch---hHHHHHHHHHHcCCcHHH
Q 048793          508 LMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERG------IVEIVAEAMDVL--PE---ESVTILEAVVKRGGLTAI  576 (683)
Q Consensus       508 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG------~V~~Lv~lL~~~--~~---~~~~aL~~L~~l~~~~e~  576 (683)
                      ++=.+++-+...++.|..+|..|+.    .....+.|      .|...+.++..+  .+   .+...+-.+..+......
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            5555577778899999999999883    22222222      444444444422  11   122212222221111111


Q ss_pred             HHHc----CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793          577 VAAY----NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL  652 (683)
Q Consensus       577 ~~~~----g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l  652 (683)
                      ....    +-+..+...|..+++.....|++.+..++...+.......+  .-+++.+..+++..+..++.|+..||+.|
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~--~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL--EELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            1111    11233333456789999999999999999877765544433  34788899999999999999999999877


Q ss_pred             Hh
Q 048793          653 RR  654 (683)
Q Consensus       653 ~~  654 (683)
                      -+
T Consensus       897 ir  898 (1176)
T KOG1248|consen  897 IR  898 (1176)
T ss_pred             HH
Confidence            54

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.017  Score=60.37  Aligned_cols=46  Identities=22%  Similarity=0.525  Sum_probs=39.2

Q ss_pred             CcccccccccCC-CCc------------eecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          275 ADFRCPISLELM-RNP------------VVVATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       275 ~~f~CPis~~~m-~dP------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      +|-.|-||++-| .-|            --+||||.+--+|...|+++ ..|||.||.|+
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            677899999764 333            57899999999999999997 77999999884

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.96  E-value=0.008  Score=64.37  Aligned_cols=42  Identities=19%  Similarity=0.563  Sum_probs=35.8

Q ss_pred             cccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          278 RCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       278 ~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      +||+|++-|.+-|    .+.|+|+|--+|+++|++   .+||+||--..
T Consensus       177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            8999999998876    559999999999999965   48999985443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.95  E-value=0.63  Score=46.84  Aligned_cols=151  Identities=14%  Similarity=0.113  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhcccCch--hHHHHhcccCcHH
Q 048793          387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSILEA--NKTRIMETEGALN  463 (683)
Q Consensus       387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~~~~--~k~~I~~~~G~I~  463 (683)
                      .-..+|+.-|..++.+. +.|..+.++..--.|-.+|..+.. +...-++-.++.++..|...++  .-.-+... ++||
T Consensus        94 nRVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHH
Confidence            34567887777777765 588888888765556677765422 2356688889999999986543  23444566 8999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhc-------ccHHHHH-HhhcCCChhHHHHHHHHHHHhcCCcc
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKT-------RVVKGLM-DLVKGGPTSSKRDALVAILNLAGDRE  535 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-------G~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~~  535 (683)
                      ..++.+..| +...+..|+.++..+-.+|.+-.-|....       -.+..+| .+.+.++.+..++++++..+|+.++.
T Consensus       172 lCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  172 LCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence            999999999 78999999999988877765433333222       2333333 34455778899999999999999886


Q ss_pred             hhHHH
Q 048793          536 TVGRL  540 (683)
Q Consensus       536 n~~~i  540 (683)
                      .|..+
T Consensus       251 ar~aL  255 (293)
T KOG3036|consen  251 ARAAL  255 (293)
T ss_pred             HHHHH
Confidence            55544

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.95  E-value=1.3  Score=51.03  Aligned_cols=198  Identities=11%  Similarity=0.080  Sum_probs=122.8

Q ss_pred             CcHHHHHHhhCCCC---CCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793          414 GAIALLARHLGPDT---ASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG  490 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~---~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~  490 (683)
                      +++|.|+.+|...-   +.++...-..|-.+|.-++..-  +..|+..  +++.+-+-+++. +..-++.|+-++.+.-.
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~D~Iv~~--Vl~Fiee~i~~p-dwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--GDDIVPH--VLPFIEENIQNP-DWRNREAAVMAFGSILE  393 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--cccchhh--hHHHHHHhcCCc-chhhhhHHHHHHHhhhc
Confidence            78999999887631   1123445555555555444211  1234432  555555566677 78999999999988877


Q ss_pred             CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc-hh-HHHHhcCchHHHHHHhccCchhHHHHHHHHH
Q 048793          491 VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE-TV-GRLVERGIVEIVAEAMDVLPEESVTILEAVV  568 (683)
Q Consensus       491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~-~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~  568 (683)
                      .++.....--..+++|.++.++.+.+--++..++|+|..++.+-. -+ ....-.+.++.|++=|.+.+.++.++.+.+.
T Consensus       394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~  473 (859)
T KOG1241|consen  394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFI  473 (859)
T ss_pred             CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHH
Confidence            665333222236899999999997777788999999999987532 21 2223356777788878877878888777776


Q ss_pred             HcCCc-HHHHHHcC-------chHHHHHHHh----c---CChHHHHHHHHHHHHHHhcCCchH
Q 048793          569 KRGGL-TAIVAAYN-------TIKKLCILLR----E---GSDTSRESAAATLVTICRKGGSEM  616 (683)
Q Consensus       569 ~l~~~-~e~~~~~g-------~v~~Lv~lL~----~---~s~~~ke~A~~aL~~L~~~~~~~~  616 (683)
                      .++.. .+....-|       ..+.++.-|-    .   .....|-.|-.+|..|-+++++.+
T Consensus       474 ~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v  536 (859)
T KOG1241|consen  474 SLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV  536 (859)
T ss_pred             HHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence            65522 11111111       1223333222    1   223456778888888888777543

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.013  Score=60.45  Aligned_cols=52  Identities=25%  Similarity=0.473  Sum_probs=43.8

Q ss_pred             CCCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          270 DANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       270 ~~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      ....|+.-.||+|.+--.+|..+ .+|..||-.||-.+.. .+.+||+|+-|..
T Consensus       294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS  346 (357)
T ss_pred             ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence            45667778999999888888766 6699999999999998 4889999998754

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=94.83  E-value=0.11  Score=45.49  Aligned_cols=67  Identities=22%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhc
Q 048793          389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIME  457 (683)
Q Consensus       389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~  457 (683)
                      +...++.|.+++..+..++..+.+.|+||.++..-.-.  ..+|-++|.|+.++.||+.+ ++|+..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--DHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--cccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45667889999999999999999999999999875432  23899999999999999975 577776654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.66  E-value=0.72  Score=52.90  Aligned_cols=258  Identities=14%  Similarity=0.159  Sum_probs=149.5

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .+..++..|.+. ++.++..|+..+..++.--..  --..+...|.|  |-..|...    ++++.-..+.||..+...-
T Consensus       800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee----ypEvLgsILgAikaI~nvi  872 (1172)
T KOG0213|consen  800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE----YPEVLGSILGAIKAIVNVI  872 (1172)
T ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc----cHHHHHHHHHHHHHHHHhc
Confidence            345566778888 899999999988887753221  12234455654  66778877    8988877777766654211


Q ss_pred             -hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          450 -ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       450 -~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                       -.+..==- .|.+|.|.-+|++. ...+++++...+..++..........+=..+--.|+++|+..+...+.+|...+.
T Consensus       873 gm~km~pPi-~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  873 GMTKMTPPI-KDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFG  950 (1172)
T ss_pred             cccccCCCh-hhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             11110001 27899999999988 5899999999999998754322222111224456888888888889999998888


Q ss_pred             HhcCCcchhHHHHhcCchHHHHHHhccCchhHH-----HHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          529 NLAGDRETVGRLVERGIVEIVAEAMDVLPEESV-----TILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~-----~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      .++.--      --..++..|++-|. ..+...     -|+++.+..|+-      ...+|+|..=-+.....+|.-...
T Consensus       951 ~IakaI------GPqdVLatLlnnLk-vqeRq~RvcTtvaIaIVaE~c~p------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen  951 YIAKAI------GPQDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCGP------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred             HHHHhc------CHHHHHHHHHhcch-HHHHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhccCchhHHHHhHHH
Confidence            775421      01122233333332 122222     233333322221      122344433222333344443444


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      +|..+...-++ .....+  ..+.|+|..-+.+.+.--|.-|..+++++.-
T Consensus      1018 alsf~Feyige-mskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1018 ALSFMFEYIGE-MSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             HHHHHHHHHHH-HhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence            43333322221 111111  3467888888888888888999999999875

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=2.5  Score=49.20  Aligned_cols=260  Identities=12%  Similarity=0.094  Sum_probs=147.5

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC------
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL------  448 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~------  448 (683)
                      .|..-|.++ +.-++.-|+.+|.+++...- .|      ...|-+.++|++.    ++.++..|+.++..+-.-      
T Consensus       111 slknDL~s~-nq~vVglAL~alg~i~s~Em-ar------dlapeVe~Ll~~~----~~~irKKA~Lca~r~irK~P~l~e  178 (866)
T KOG1062|consen  111 SLKNDLNSS-NQYVVGLALCALGNICSPEM-AR------DLAPEVERLLQHR----DPYIRKKAALCAVRFIRKVPDLVE  178 (866)
T ss_pred             HHHhhccCC-CeeehHHHHHHhhccCCHHH-hH------HhhHHHHHHHhCC----CHHHHHHHHHHHHHHHHcCchHHH
Confidence            355667777 77788888888888865332 22      4567778888888    889998888877766321      


Q ss_pred             ---chhHHHHh-cccC----cHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcCcchhhHHhhhcc--------cHHH
Q 048793          449 ---EANKTRIM-ETEG----ALNGVIEVLRSGAT-----WEAKGNAAATIFSLSGVHAHRKTLGRKTR--------VVKG  507 (683)
Q Consensus       449 ---~~~k~~I~-~~~G----~I~~Lv~lL~~~~~-----~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G--------~i~~  507 (683)
                         ...+..+- ++.|    ++..+.++++.+.+     ......-..+|.++....-..+.=  .+|        -+--
T Consensus       179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd--v~gi~dPFLQi~iLr  256 (866)
T KOG1062|consen  179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD--VHGISDPFLQIRILR  256 (866)
T ss_pred             HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC--ccCCCchHHHHHHHH
Confidence               11222222 1123    34444444443211     112233444555554321100000  012        1233


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHhcCCcc---hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCch-
Q 048793          508 LMDLVKGGPTSSKRDALVAILNLAGDRE---TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTI-  583 (683)
Q Consensus       508 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v-  583 (683)
                      +.++|..++++........|..++.+.+   |...++=..+|..+..+.. +.+..+.|+.+|...-.+.+.-..+-++ 
T Consensus       257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            5566777788888888888888887543   6666666666777766654 4556666666666533222211111111 


Q ss_pred             -----------------HHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHH-HH
Q 048793          584 -----------------KKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARR-KA  645 (683)
Q Consensus       584 -----------------~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~-kA  645 (683)
                                       ..++..|+..++..|..|...+..|...+   .++.+      ++-|+..+.+.++..|. -|
T Consensus       336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~---Nv~~m------v~eLl~fL~~~d~~~k~~~a  406 (866)
T KOG1062|consen  336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES---NVRVM------VKELLEFLESSDEDFKADIA  406 (866)
T ss_pred             hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc---cHHHH------HHHHHHHHHhccHHHHHHHH
Confidence                             35556677778888888888888877632   23433      45567777777888874 44


Q ss_pred             HHHHHHHHhhhcc
Q 048793          646 AALLRILRRWAAG  658 (683)
Q Consensus       646 ~~lL~~l~~~~~~  658 (683)
                      ..+...--+|.+.
T Consensus       407 s~I~~laEkfaP~  419 (866)
T KOG1062|consen  407 SKIAELAEKFAPD  419 (866)
T ss_pred             HHHHHHHHhcCCc
Confidence            4444444445544

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=3.6  Score=47.69  Aligned_cols=234  Identities=12%  Similarity=0.108  Sum_probs=135.4

Q ss_pred             CcHHHHHHhhCCCCCCCCh-hhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcC
Q 048793          414 GAIALLARHLGPDTASRLP-NLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~-~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      +.|+.|+.-...+    .+ .+++.++.+|+-+|.+-+-...+-....++-.++.-.+ .+.+..+|-.|..+|.+--..
T Consensus       129 ~li~~lv~nv~~~----~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef  204 (859)
T KOG1241|consen  129 ELIVTLVSNVGEE----QASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF  204 (859)
T ss_pred             HHHHHHHHhcccc----cchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence            4445555444443    33 48888999999998764333333333356666666554 344678888888888865321


Q ss_pred             -------cchhhHHhh-------------hcccHHHHHHh-----------------------hcCCChhHHHHHHHHHH
Q 048793          492 -------HAHRKTLGR-------------KTRVVKGLMDL-----------------------VKGGPTSSKRDALVAIL  528 (683)
Q Consensus       492 -------~~~~~~i~~-------------~~G~i~~Lv~l-----------------------L~~~~~~~~~~A~~aL~  528 (683)
                             +.+|.-|..             ..-++.-|+++                       ++++++++.-.++.-=.
T Consensus       205 ~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWs  284 (859)
T KOG1241|consen  205 TKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWS  284 (859)
T ss_pred             HHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                   111111100             01133334433                       23455555555554444


Q ss_pred             HhcCCcc-----------------hhHHHHh--cCchHHHHHHhcc-C----ch-----h-HHHHHHHHHHcCCcHHHHH
Q 048793          529 NLAGDRE-----------------TVGRLVE--RGIVEIVAEAMDV-L----PE-----E-SVTILEAVVKRGGLTAIVA  578 (683)
Q Consensus       529 nLs~~~~-----------------n~~~iv~--aG~V~~Lv~lL~~-~----~~-----~-~~~aL~~L~~l~~~~e~~~  578 (683)
                      ++|...-                 ++..+..  .+++|.|+++|.. +    .+     + +..||..++..+++. .+.
T Consensus       285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~  363 (859)
T KOG1241|consen  285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-IVP  363 (859)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-chh
Confidence            4543110                 1111111  2677889998862 1    11     1 555666666666543 111


Q ss_pred             HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          579 AYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       579 ~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                        -..|-+-.-+++.+-+.++.|+-++-.+-.+-.......+  ..+++|.++.+..+.+--+|+.|+|.|-.+.++-
T Consensus       364 --~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i--V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  364 --HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI--VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             --hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH--HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence              1233333356778889999999998887764333333333  4688999999999999999999999998887743

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.36  Score=54.60  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             HHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHH
Q 048793          539 RLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV  617 (683)
Q Consensus       539 ~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~  617 (683)
                      .++..|+-.++|.=|.++ -++...|+..++.++.+.-... ...+..|+.++...-..+|..|..+|..|+.+..-   
T Consensus       368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i---  443 (823)
T KOG2259|consen  368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI---  443 (823)
T ss_pred             ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee---
Confidence            356667777777766543 3557777777777664322211 12467888888888888999999999999886321   


Q ss_pred             HHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          618 ADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       618 ~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                           +..-++.+..-+.+.+.++|+.+..+|++
T Consensus       444 -----~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  444 -----REEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             -----cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence                 11223444444555555555555544443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=94.19  E-value=0.21  Score=55.20  Aligned_cols=164  Identities=12%  Similarity=0.113  Sum_probs=119.0

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .++.|++.|+.+ +..+.--+...++++.-.-..-+..+.+.|.|..|++++.+.    |..+|.+..|.|..+--+.++
T Consensus       432 I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK----DdaLqans~wvlrHlmyncq~  506 (743)
T COG5369         432 IVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK----DDALQANSEWVLRHLMYNCQK  506 (743)
T ss_pred             hHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc----hhhhhhcchhhhhhhhhcCcc
Confidence            466777777654 444445567778887766665788999999999999999998    889999999999999766433


Q ss_pred             --HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----cchhhHHhh---hcccHHHHHHhhcCCChhHHHH
Q 048793          452 --KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV----HAHRKTLGR---KTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       452 --k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~----~~~~~~i~~---~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                        +-+.... -+++.++.+.... +..++.....+|.|+..+    ++.+.....   ..=..+.|++.+...+|-....
T Consensus       507 ~ekf~~Lak-ig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         507 NEKFKFLAK-IGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             hhhhhhHHh-cCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence              3344444 5788899998776 688999999999999753    222222221   0114556777777777766666


Q ss_pred             HHHHHHHhcCCcchhHHHHh
Q 048793          523 ALVAILNLAGDRETVGRLVE  542 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~  542 (683)
                      .+-.|.+++..+++...++.
T Consensus       585 ~~yilv~~aa~d~~l~~~V~  604 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQ  604 (743)
T ss_pred             hHHHHHHHHhccchHHHHHH
Confidence            78889999888888766653

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.10  E-value=0.02  Score=60.76  Aligned_cols=34  Identities=12%  Similarity=0.443  Sum_probs=30.0

Q ss_pred             CCcccccccccCCCCceecCCccccchhhHHHHH
Q 048793          274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWI  307 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~  307 (683)
                      .+++.||||...++||++++|||++||.|-..-.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            4789999999999999999999999999865443

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=93.65  E-value=0.027  Score=53.81  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             ccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          277 FRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      |.|-||.+-+..||++.|||.||-.|-.+-.+. ..+|-+|++..
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            999999999999999999999999997777665 56888888653

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.54  E-value=1.2  Score=51.67  Aligned_cols=264  Identities=13%  Similarity=0.100  Sum_probs=150.8

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ....|.+.+++. ++.+|..|+-...++=.   .+.+.....|.++.|-+++.+.    ++.+..+|+.+|..+...+.+
T Consensus       122 ~~~Pl~~~l~d~-~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~----~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  122 LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS----NPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHHHHHHhccCC-ChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC----CchHHHHHHHHHHHHHHhCCC
Confidence            455677888888 89999988887776633   3567777889999999999987    999999999999998644322


Q ss_pred             --HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          452 --KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       452 --k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                        ...+..  -.+..++..|..-    .--.-+.+|-.|+..-....  .+....+..+...|.+.+..+.-.+..++.+
T Consensus       194 ~~~~~l~~--~~~~~lL~al~ec----~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  194 VNLLELNP--QLINKLLEALNEC----TEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCcccccH--HHHHHHHHHHHHh----hhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence              111111  1233333333322    11222344444443322111  1112345566667777777777777777777


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcC-CcHHHH-HHc---------------CchHHHHHH---
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRG-GLTAIV-AAY---------------NTIKKLCIL---  589 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~-~~~e~~-~~~---------------g~v~~Lv~l---  589 (683)
                      +.....+....+---.-++|+.++...++..--+|..+..+- ..++.. .++               -.+..+..+   
T Consensus       266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~  345 (734)
T KOG1061|consen  266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND  345 (734)
T ss_pred             HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence            766555544444444556666666644443333333332210 111110 000               001111111   


Q ss_pred             -------------HhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          590 -------------LREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       590 -------------L~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                                   -...+..--+.|++++..++..-     .+   ..+.+..|.+++..+-+-+...+...++.+-+..
T Consensus       346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~-----e~---~~~cv~~lLell~~~~~yvvqE~~vvi~dilRky  417 (734)
T KOG1061|consen  346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQ---SNDCVSILLELLETKVDYVVQEAIVVIRDILRKY  417 (734)
T ss_pred             hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hh---hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence                         11245555566777766665421     11   1678899999999887777777778888777755


Q ss_pred             ccc
Q 048793          657 AGL  659 (683)
Q Consensus       657 ~~~  659 (683)
                      +++
T Consensus       418 P~~  420 (734)
T KOG1061|consen  418 PNK  420 (734)
T ss_pred             CCc
Confidence            554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=93.54  E-value=2.7  Score=47.61  Aligned_cols=183  Identities=16%  Similarity=0.163  Sum_probs=108.0

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .++.++.-+... .......++..|..++...+ -.-......+||.|...|-.+    .+++++.+..+|.+++.-.+|
T Consensus       255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT----~~evr~a~~~~l~~~~svidN  328 (569)
T KOG1242|consen  255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDT----KPEVRKAGIETLLKFGSVIDN  328 (569)
T ss_pred             hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccC----CHHHHHHHHHHHHHHHHhhcc
Confidence            344444444444 45677788888888777665 333444568999999999998    999999999999999876666


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      .. |-   -.+|.|++-+.... . ....+...|..-......- ..+   +=.+|-|-+=+...+...++.++.++.|+
T Consensus       329 ~d-I~---~~ip~Lld~l~dp~-~-~~~e~~~~L~~ttFV~~V~~psL---almvpiL~R~l~eRst~~kr~t~~IidNm  399 (569)
T KOG1242|consen  329 PD-IQ---KIIPTLLDALADPS-C-YTPECLDSLGATTFVAEVDAPSL---ALMVPILKRGLAERSTSIKRKTAIIIDNM  399 (569)
T ss_pred             HH-HH---HHHHHHHHHhcCcc-c-chHHHHHhhcceeeeeeecchhH---HHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence            55 32   25777888886541 1 1222333333222222111 111   11234444445555667889999999999


Q ss_pred             cCCcchhHHHHhc--CchHHHHHHhccC-chh---HHHHHHHHHH
Q 048793          531 AGDRETVGRLVER--GIVEIVAEAMDVL-PEE---SVTILEAVVK  569 (683)
Q Consensus       531 s~~~~n~~~iv~a--G~V~~Lv~lL~~~-~~~---~~~aL~~L~~  569 (683)
                      |.--++...+..-  -.+|.|=..+.+. ++.   +.+||+.+..
T Consensus       400 ~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  400 CKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            9866555444321  1223333333222 443   6667755543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.32  E-value=0.63  Score=52.80  Aligned_cols=214  Identities=16%  Similarity=0.163  Sum_probs=132.5

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH---hccc---C-
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL---NLSI---L-  448 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~---nLs~---~-  448 (683)
                      |..+.... |..++..|+..|..|.....-.+.      .....+..++..    +..++..|+.++.   |...   . 
T Consensus       203 l~~~~~~~-D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~----~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  203 LIYLEHDQ-DFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD----YEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHhcCC-CcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch----HHHHHHHHHHHHHHHHhcCCCcccc
Confidence            65666666 888899999988887764432222      234557778777    7788887765554   3331   1 


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc------------------------------------
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH------------------------------------  492 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~------------------------------------  492 (683)
                      +.+......  .+...+-+.++.. +..+|..|+.+|..+-...                                    
T Consensus       272 e~~e~kl~D--~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS  348 (823)
T KOG2259|consen  272 ESEEEKLKD--AAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS  348 (823)
T ss_pred             hhhhhhhHH--HHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence            122233333  3566677777665 4666666666655443221                                    


Q ss_pred             ---------------chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC
Q 048793          493 ---------------AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL  556 (683)
Q Consensus       493 ---------------~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~  556 (683)
                                     +....|.. .|+-.++|.=|.+.-.+++++|+..++.|+.+. .-...     ++..|+++++++
T Consensus       349 sGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE  422 (823)
T KOG2259|consen  349 SGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE  422 (823)
T ss_pred             cCccccccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH
Confidence                           11223444 567778888777666789999999999998753 33322     466899999865


Q ss_pred             -chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Q 048793          557 -PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKG  612 (683)
Q Consensus       557 -~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~  612 (683)
                       .++...|+..|..++.+  +......++.+...|...++.+|+..-..|. .|+..
T Consensus       423 ~~~VRL~ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~-~~~~~  476 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVH--LAIREEQLRQILESLEDRSVDVREALRELLK-NARVS  476 (823)
T ss_pred             HHHHHHHHHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCC
Confidence             34456666666554433  2122234678888888889999988777543 34443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.31  E-value=0.3  Score=43.96  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNL  445 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL  445 (683)
                      ..+..|+.+|..+.|+....-|+.-|..+++..+..|..+-+.|+=..+..|+.++    |++++.+|+.++..+
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~----d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE----DPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence            35678899994432777788899999999999999999888899999999999999    999999999998765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.21  E-value=1.3  Score=45.34  Aligned_cols=153  Identities=13%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCc--hhHHHHhcccCcHH
Q 048793          387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILE--ANKTRIMETEGALN  463 (683)
Q Consensus       387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~--~~k~~I~~~~G~I~  463 (683)
                      .-..+|+.-+..+|.+. +.|..+.++...-.|-.+|...... ....++-.++.+++.|.+.+  +.-.-+... +.+|
T Consensus        65 nRVcnaLaLlQ~vAshp-etr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-Eiip  142 (262)
T PF04078_consen   65 NRVCNALALLQCVASHP-ETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIP  142 (262)
T ss_dssp             HHHHHHHHHHHHHHH-T-TTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHH
T ss_pred             HHHHHHHHHHHHHHcCh-HHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHH
Confidence            34577888888888854 6999999999887888888765211 12346677888888887643  333444566 8999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-------cHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcc
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR-------VVKGLMD-LVKGGPTSSKRDALVAILNLAGDRE  535 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G-------~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~  535 (683)
                      ..++.++.| +.-.|..|.-++..+-.++.+-.-+.....       ++..+|. +..+.+++..++.+++-..||.++.
T Consensus       143 lcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  143 LCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            999999999 789999999999998887765544443333       3333333 3355678899999999999999998


Q ss_pred             hhHHHHh
Q 048793          536 TVGRLVE  542 (683)
Q Consensus       536 n~~~iv~  542 (683)
                      .+..+..
T Consensus       222 ar~aL~~  228 (262)
T PF04078_consen  222 AREALRQ  228 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.21  E-value=3.3  Score=45.57  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=92.5

Q ss_pred             HHHhhCCCCCCCChhhHHHHHHHHHhcccCc----hhHHHHhcccCcHHHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 048793          419 LARHLGPDTASRLPNLQVNAVTTILNLSILE----ANKTRIMETEGALNGVIEVLRSG------ATWEAKGNAAATIFSL  488 (683)
Q Consensus       419 Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~----~~k~~I~~~~G~I~~Lv~lL~~~------~~~~~~~~Aa~~L~~L  488 (683)
                      +..+++..    +.+-|-.|+-....+.+++    .+|+.+.++ -+.+.+-++|.++      .+.-.+..+..+|.-.
T Consensus        16 ~~~L~~~k----~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF   90 (698)
T KOG2611|consen   16 CLKLLKGK----RDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF   90 (698)
T ss_pred             HHHHhccc----ChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence            44455555    4555666666666666553    467778887 6678888888753      1234567788888888


Q ss_pred             hcCcch--hhHHhhhcccHHHHHHhhcCC-Chh------HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc
Q 048793          489 SGVHAH--RKTLGRKTRVVKGLMDLVKGG-PTS------SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD  554 (683)
Q Consensus       489 s~~~~~--~~~i~~~~G~i~~Lv~lL~~~-~~~------~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~  554 (683)
                      |..++-  ...++   ..||.|.+++..+ +++      ...++-.+|+.++.++.+...++..|+++.+.++-.
T Consensus        91 C~~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   91 CRVPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hCChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence            888763  33443   4699999998754 222      668999999999999999999999999999998754

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.13  E-value=0.022  Score=57.15  Aligned_cols=53  Identities=17%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             CcccccccccCCCCce----------ecCCccccchhhHHHHHhcCC-CCCCCCCCccCCCCCc
Q 048793          275 ADFRCPISLELMRNPV----------VVATGQTYDRQSISLWIESGH-NTCPKTGQTLAHTNLV  327 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv----------~~~~g~ty~r~~I~~w~~~g~-~~cP~~~~~l~~~~l~  327 (683)
                      ++-.|-+|++-+-+.+          .++|||.|---||..||--|. .|||-|++..+...+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf  286 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF  286 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence            4568999987666555          679999999999999998775 6999999876544433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=3.6  Score=47.97  Aligned_cols=207  Identities=15%  Similarity=0.161  Sum_probs=114.0

Q ss_pred             HHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc--Ccchh
Q 048793          418 LLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG--VHAHR  495 (683)
Q Consensus       418 ~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~--~~~~~  495 (683)
                      .++..|+..    |..++..|+..+..|. ++.|-+.|++.      |+.+|.+. +.+.+...+.-+..++.  .++++
T Consensus       354 tIleCL~Dp----D~SIkrralELs~~lv-n~~Nv~~mv~e------Ll~fL~~~-d~~~k~~~as~I~~laEkfaP~k~  421 (866)
T KOG1062|consen  354 TILECLKDP----DVSIKRRALELSYALV-NESNVRVMVKE------LLEFLESS-DEDFKADIASKIAELAEKFAPDKR  421 (866)
T ss_pred             HHHHHhcCC----cHHHHHHHHHHHHHHh-ccccHHHHHHH------HHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcch
Confidence            355667777    8889998888777765 44555555544      88888887 79999999999999985  45566


Q ss_pred             hHHhh------------hcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHH
Q 048793          496 KTLGR------------KTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTI  563 (683)
Q Consensus       496 ~~i~~------------~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~a  563 (683)
                      +.|-.            ...++..|+.++.++..+..+++...|+.-.... +...+-+.-.+..           +.++
T Consensus       422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~-~~~~is~e~l~qV-----------a~W~  489 (866)
T KOG1062|consen  422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSED-TLLDISQEPLLQV-----------ASWC  489 (866)
T ss_pred             hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh-hhhhhhhhhHHHH-----------HHHH
Confidence            65521            0235556666665554444444444444321111 0111101111111           2222


Q ss_pred             HHHHH--HcCC-c---HHHHHHcCchHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh
Q 048793          564 LEAVV--KRGG-L---TAIVAAYNTIKKLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME  635 (683)
Q Consensus       564 L~~L~--~l~~-~---~e~~~~~g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~  635 (683)
                      ++--.  .+.+ +   +....+...+..|-+++.+  .+..+|.+|..+|..|+....+. ..      -+-.++.....
T Consensus       490 IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-~~------ri~~lI~~~~~  562 (866)
T KOG1062|consen  490 IGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-SE------RIKQLISSYKS  562 (866)
T ss_pred             hhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-HH------HHHHHHHHhcc
Confidence            22211  0111 1   1111112335566666653  56788999999999998755432 11      11233444455


Q ss_pred             cCCHHHHHHHHHHHHHHHhh
Q 048793          636 SGTARARRKAAALLRILRRW  655 (683)
Q Consensus       636 ~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +-+...|.+|...=..+.++
T Consensus       563 s~~~elQQRa~E~~~l~~~~  582 (866)
T KOG1062|consen  563 SLDTELQQRAVEYNALFAKD  582 (866)
T ss_pred             cccHHHHHHHHHHHHHHHHH
Confidence            55777888887766666443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.97  E-value=13  Score=43.06  Aligned_cols=257  Identities=15%  Similarity=0.186  Sum_probs=144.4

Q ss_pred             HhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          368 ATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       368 ~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      +.+...+.|++.|..+ |+.++-.|+..|+.||..++.|--     -.-|.+..+|....   +-=+....+....+|+-
T Consensus       178 Alr~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL-----~LAP~ffkllttSs---NNWmLIKiiKLF~aLtp  248 (877)
T KOG1059|consen  178 ALRPCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYL-----QLAPLFYKLLVTSS---NNWVLIKLLKLFAALTP  248 (877)
T ss_pred             hHhhhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccc-----cccHHHHHHHhccC---CCeehHHHHHHHhhccc
Confidence            3566788999999999 999999999999999999986543     34577888876541   33345556666677765


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH--HhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF--SLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~--~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                      -+.   ++++  -.+++|.+++.+..-+...-.+..++-  +++... ++-..+   .=++..|-.++.+.++..+--++
T Consensus       249 lEP---RLgK--KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgL  320 (877)
T KOG1059|consen  249 LEP---RLGK--KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGL  320 (877)
T ss_pred             cCc---hhhh--hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHH
Confidence            443   3333  378899999976521222333333332  222222 222222   23677888888888888888889


Q ss_pred             HHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCC-hHHHHHH
Q 048793          525 VAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGS-DTSRESA  601 (683)
Q Consensus       525 ~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s-~~~ke~A  601 (683)
                      .|+.-+...+. ...+-     -..++.+|.+. +....+||-.|.-.-... .+.++  +..|+.-+...+ ..-+..-
T Consensus       321 lam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~eI--Vk~LM~~~~~ae~t~yrdel  392 (877)
T KOG1059|consen  321 LAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKK-NLMEI--VKTLMKHVEKAEGTNYRDEL  392 (877)
T ss_pred             HHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHHH--HHHHHHHHHhccchhHHHHH
Confidence            99988876432 22111     12356677653 455778888775433211 11111  222322222222 2344444


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHH
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALLRIL  652 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l  652 (683)
                      +.-+..+|+.+....+...   .=.+..|++|..- |+.+...-|..++-..
T Consensus       393 l~~II~iCS~snY~~ItdF---EWYlsVlveLa~l~~~~~G~~I~eQi~Dv~  441 (877)
T KOG1059|consen  393 LTRIISICSQSNYQYITDF---EWYLSVLVELARLEGTRHGSLIAEQIIDVA  441 (877)
T ss_pred             HHHHHHHhhhhhhhhhhhH---HHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence            4445667765443221111   1134445555443 3444444444444443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.88  E-value=0.76  Score=45.27  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=89.4

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcc---------------cCcHHHHHHHHhcCC-----CHHHHHHHHHHHHHhhc
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMET---------------EGALNGVIEVLRSGA-----TWEAKGNAAATIFSLSG  490 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~---------------~G~I~~Lv~lL~~~~-----~~~~~~~Aa~~L~~Ls~  490 (683)
                      +...-..++++|.||+..+..+..+...               ..++..|+..+..|.     ...-....+.+|.|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            3445567888899998887777644421               136778888876621     24556789999999999


Q ss_pred             CcchhhHHhhhccc---HHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc---CchHHHHHHhc
Q 048793          491 VHAHRKTLGRKTRV---VKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVER---GIVEIVAEAMD  554 (683)
Q Consensus       491 ~~~~~~~i~~~~G~---i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv~lL~  554 (683)
                      .++.|..+......   +..|+....+.+.--+.-++.+|.|+|...+....+...   +++|.|+--|.
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999864433   566666666666556688999999999999988888763   55666555554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.62  E-value=0.086  Score=52.54  Aligned_cols=51  Identities=16%  Similarity=0.356  Sum_probs=42.1

Q ss_pred             CCcccccccccCCCCce----ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc
Q 048793          274 PADFRCPISLELMRNPV----VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV  327 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv----~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~  327 (683)
                      -..|+|||++-.|.+-.    +.+|||.|.-++.++.-   ..+|++|++.+...+++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence            36799999999998754    55999999988877664   46999999999888765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.54  E-value=3.4  Score=48.67  Aligned_cols=89  Identities=13%  Similarity=0.165  Sum_probs=53.4

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMD  510 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~  510 (683)
                      ++.+|..|+.++..+=.     ..+.+  .+++++.+.+.++ ++.+|+.|+-+++++-..+..  ...+ .|.+..+..
T Consensus       105 N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~--l~~~-~g~~~~l~~  173 (757)
T COG5096         105 NEEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD--LYHE-LGLIDILKE  173 (757)
T ss_pred             CHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh--hhhc-ccHHHHHHH
Confidence            67777666666655421     12222  2566667777666 567777777777766544332  2222 566777777


Q ss_pred             hhcCCChhHHHHHHHHHHHh
Q 048793          511 LVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       511 lL~~~~~~~~~~A~~aL~nL  530 (683)
                      ++.+.++.++.+|+.+|..+
T Consensus       174 l~~D~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         174 LVADSDPIVIANALASLAEI  193 (757)
T ss_pred             HhhCCCchHHHHHHHHHHHh
Confidence            77666677777766666653

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.49  E-value=2.2  Score=50.10  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=70.2

Q ss_pred             hccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhccc
Q 048793          380 LATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETE  459 (683)
Q Consensus       380 L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~  459 (683)
                      |.++ |+..|.-|++.+..+-.     .+.  -..+++++.+++.++    ++.++..|+-++.++=.  -.+....+. 
T Consensus       101 l~d~-N~~iR~~AlR~ls~l~~-----~el--~~~~~~~ik~~l~d~----~ayVRk~Aalav~kly~--ld~~l~~~~-  165 (757)
T COG5096         101 LQDP-NEEIRGFALRTLSLLRV-----KEL--LGNIIDPIKKLLTDP----HAYVRKTAALAVAKLYR--LDKDLYHEL-  165 (757)
T ss_pred             ccCC-CHHHHHHHHHHHHhcCh-----HHH--HHHHHHHHHHHccCC----cHHHHHHHHHHHHHHHh--cCHhhhhcc-
Confidence            3445 67777777766655411     111  124788899999999    99999999999988742  234455565 


Q ss_pred             CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793          460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       460 G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      |.+..+..++... ++.+..+|..+|..+-..
T Consensus       166 g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         166 GLIDILKELVADS-DPIVIANALASLAEIDPE  196 (757)
T ss_pred             cHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence            8999888888877 799999999999987543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.47  E-value=19  Score=42.13  Aligned_cols=252  Identities=17%  Similarity=0.185  Sum_probs=137.8

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh-
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN-  451 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~-  451 (683)
                      .+++=++|++. ...+..+|+.++..+....+  | .+.  .++..|-.+|+++    .+.+|-.|+.+|..++.-... 
T Consensus       247 ~~fl~s~l~~K-~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp----~~~lRfaAvRtLnkvAm~~P~~  316 (865)
T KOG1078|consen  247 FPFLESCLRHK-SEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSP----KVALRFAAVRTLNKVAMKHPQA  316 (865)
T ss_pred             HHHHHHHHhch-hHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHhCCcc
Confidence            34555677777 78888999999998876543  2 222  2788888889998    889999999999988642111 


Q ss_pred             --------HHHHhccc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CcchhhHHhhhcccHHHHHHhhcCCChhH
Q 048793          452 --------KTRIMETE--GALNGVIEVLRSGATWEAKGNAAATIFSLSG--VHAHRKTLGRKTRVVKGLMDLVKGGPTSS  519 (683)
Q Consensus       452 --------k~~I~~~~--G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~--~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~  519 (683)
                              -..|....  =+-..+..+|+.| ..+....-...+.+...  .++++..++.   +|.+|-..    -++-
T Consensus       317 v~~cN~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvd---ai~sLc~~----fp~k  388 (865)
T KOG1078|consen  317 VTVCNLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVD---AIRSLCLK----FPRK  388 (865)
T ss_pred             ccccchhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHH---HHHHHHhh----ccHH
Confidence                    11222110  1344566667766 34444433333333322  2334433322   23333222    1222


Q ss_pred             HHHHHHHHHHhcCCcc---hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHc---CCcHHHHHHc----C--------
Q 048793          520 KRDALVAILNLAGDRE---TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKR---GGLTAIVAAY----N--------  581 (683)
Q Consensus       520 ~~~A~~aL~nLs~~~~---n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l---~~~~e~~~~~----g--------  581 (683)
                      +.-...-|.++-...+   -+..     +|..++.++.+.++..+.++..|+..   |...+....+    |        
T Consensus       389 ~~~~m~FL~~~Lr~eGg~e~K~a-----ivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~  463 (865)
T KOG1078|consen  389 HTVMMNFLSNMLREEGGFEFKRA-----IVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN  463 (865)
T ss_pred             HHHHHHHHHHHHHhccCchHHHH-----HHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC
Confidence            2233333444332211   1222     23345555554555566666666542   1111111100    1        


Q ss_pred             ---chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          582 ---TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       582 ---~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                         -+..+...+.-.+..++-.|+.+|..+...+..  .     ...+.-+|...+.+.++.+|+.|...|+.+..
T Consensus       464 Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  464 PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--L-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--c-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence               133344444446777888888888877743221  1     13445556667788899999999999999984

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=92.47  E-value=2.4  Score=40.22  Aligned_cols=117  Identities=13%  Similarity=0.063  Sum_probs=87.2

Q ss_pred             cccHHHHHHhhcCCCh------hHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC---chhHHHHHHHHHHcCC
Q 048793          502 TRVVKGLMDLVKGGPT------SSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL---PEESVTILEAVVKRGG  572 (683)
Q Consensus       502 ~G~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~~l~~  572 (683)
                      .||+..|+.++.++..      +....++.++..|-.++-.-...+..-.|...+..+...   ......|+++|-.+.-
T Consensus        10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl   89 (160)
T PF11841_consen   10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL   89 (160)
T ss_pred             ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence            6889999999998873      566889999999888765455666666777777777632   3458889999976443


Q ss_pred             cH-H---HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHH
Q 048793          573 LT-A---IVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVA  618 (683)
Q Consensus       573 ~~-e---~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~  618 (683)
                      +. .   .+...-.++.|+..|+..++..+.+|.+.+-+|....++...+
T Consensus        90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~  139 (160)
T PF11841_consen   90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK  139 (160)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH
Confidence            32 2   2222334789999999999999999999999998877654333

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=92.34  E-value=2.8  Score=49.60  Aligned_cols=263  Identities=14%  Similarity=0.124  Sum_probs=134.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chh-H
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EAN-K  452 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~-k  452 (683)
                      .|++.+.++ |-+.|.-|..-|..--..+.-+-+.=.+...+..|+++|+..    +.++|..|+.+|.-|+.- .+. -
T Consensus         9 ~Llekmtss-DKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~----ngEVQnlAVKClg~lvsKvke~~l   83 (1233)
T KOG1824|consen    9 NLLEKMTSS-DKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVKEDQL   83 (1233)
T ss_pred             HHHHHccCC-CcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhchHHHH
Confidence            567777777 777777776665543222211111112346788899999998    999999999999988721 111 1


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHH-HHHHHHHHhhcCcc-----hhhHHhhhcccHHHHHHhhcC-CC-hhHHHHHH
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKG-NAAATIFSLSGVHA-----HRKTLGRKTRVVKGLMDLVKG-GP-TSSKRDAL  524 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~-~Aa~~L~~Ls~~~~-----~~~~i~~~~G~i~~Lv~lL~~-~~-~~~~~~A~  524 (683)
                      +.+      ++.|..-+-+|. .+.|- .+.+.....+....     ....+..  ...+.|+.-+.. ++ ..++-.++
T Consensus        84 e~~------ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~l  154 (1233)
T KOG1824|consen   84 ETI------VENLCSNMLSGK-EQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVL  154 (1233)
T ss_pred             HHH------HHHHhhhhccch-hhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHH
Confidence            111      222332222342 23332 23333333343332     1122211  233444443322 22 23555555


Q ss_pred             HHHHHhcCC-cchhHHHHhcCchHHHHHHhccCch-hHHHHHHHHHHc---CCcHHHHHHcCchHHHHHHHhc-CChHHH
Q 048793          525 VAILNLAGD-RETVGRLVERGIVEIVAEAMDVLPE-ESVTILEAVVKR---GGLTAIVAAYNTIKKLCILLRE-GSDTSR  598 (683)
Q Consensus       525 ~aL~nLs~~-~~n~~~iv~aG~V~~Lv~lL~~~~~-~~~~aL~~L~~l---~~~~e~~~~~g~v~~Lv~lL~~-~s~~~k  598 (683)
                      ..|.-+-.. .+-..- ...+....++.-|.+... ...+|+..|..+   ++.....   +.+..|++-|.+ .++...
T Consensus       155 Dil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~---~li~~Ll~~L~~~~q~~~~  230 (1233)
T KOG1824|consen  155 DILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYV---ELIEHLLKGLSNRTQMSAT  230 (1233)
T ss_pred             HHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHhccCCCCchHHH
Confidence            555543222 111111 344555556655554322 244455545443   3322111   224444443422 334444


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHhhhcc
Q 048793          599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELM---ESGTARARRKAAALLRILRRWAAG  658 (683)
Q Consensus       599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll---~~~~~~~k~kA~~lL~~l~~~~~~  658 (683)
                      +--..+|..+|+..+.+.-.   -...++|.+....   ....++.+++....+..|-+..+.
T Consensus       231 rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  231 RTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             HHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence            55566778888876643211   1145788888877   667899999998888887665444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.05  E-value=3.8  Score=49.08  Aligned_cols=214  Identities=13%  Similarity=0.053  Sum_probs=138.2

Q ss_pred             HHHHHHhhhccCchhHHHHH---HhCcHHHHHHhhCCCCCCCChhhHHHHHHHH-HhcccCchhHHHHhcccCcHHHHHH
Q 048793          392 AVYELRSLSKTDSDSRACIA---EAGAIALLARHLGPDTASRLPNLQVNAVTTI-LNLSILEANKTRIMETEGALNGVIE  467 (683)
Q Consensus       392 A~~~L~~La~~~~~nr~~i~---~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL-~nLs~~~~~k~~I~~~~G~I~~Lv~  467 (683)
                      =+++|..|++.-+-....+-   .-|+.|..++||.+.    ..+++-.-+-+= .-|+.++.-+..+++. ++-.-++.
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----a~ELrpiLVFIWAKILAvD~SCQ~dLvKe-~g~~YF~~  561 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----ARELRPILVFIWAKILAVDPSCQADLVKE-NGYKYFLQ  561 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----hHhhhhhHHHHHHHHHhcCchhHHHHHhc-cCceeEEE
Confidence            34555555555544443332   349999999999998    666653322222 3467787777888887 66777788


Q ss_pred             HHhcC--CCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHHHHHHhcC-CcchhHHHHh
Q 048793          468 VLRSG--ATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALVAILNLAG-DRETVGRLVE  542 (683)
Q Consensus       468 lL~~~--~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~-~~~n~~~iv~  542 (683)
                      +|..+  -+++-|..|+-+|..+..+-. .++...+ .+.|..-...|.++. +-.+.-++-+|..|-. ++++|..=++
T Consensus       562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r  640 (1387)
T KOG1517|consen  562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR  640 (1387)
T ss_pred             EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence            88752  235888889999988887643 5555555 677887778888753 4466677778888855 4567777789


Q ss_pred             cCchHHHHHHhccC-chhHHHHHHHHHHcCCc-----HH---HHHH-----------cCch----HHHHHHHhcCChHHH
Q 048793          543 RGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-----TA---IVAA-----------YNTI----KKLCILLREGSDTSR  598 (683)
Q Consensus       543 aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-----~e---~~~~-----------~g~v----~~Lv~lL~~~s~~~k  598 (683)
                      .++...|+.+|.+. +++...|+-+|..+-++     .+   .+..           ...+    -.++.++..+++-++
T Consensus       641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr  720 (1387)
T KOG1517|consen  641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVR  720 (1387)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHH
Confidence            99999999999864 66655555555432221     11   1100           0112    245556677888888


Q ss_pred             HHHHHHHHHHHhc
Q 048793          599 ESAAATLVTICRK  611 (683)
Q Consensus       599 e~A~~aL~~L~~~  611 (683)
                      ...+-+|......
T Consensus       721 ~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  721 TEVVVALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHHHHHh
Confidence            7766667666553

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.70  E-value=14  Score=41.77  Aligned_cols=266  Identities=12%  Similarity=0.077  Sum_probs=148.4

Q ss_pred             HHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCchhHHHHh
Q 048793          378 NKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILEANKTRIM  456 (683)
Q Consensus       378 ~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~~k~~I~  456 (683)
                      +.|.++ .+.....|+..|..++.-.-       -.|.-|-|...+...++. .....+.+++.++.+.+...+-...+.
T Consensus       101 ~aL~s~-epr~~~~Aaql~aaIA~~El-------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~  172 (858)
T COG5215         101 RALKSP-EPRFCTMAAQLLAAIARMEL-------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ  172 (858)
T ss_pred             HHhcCC-ccHHHHHHHHHHHHHHHhhC-------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence            455665 56666666666666654322       124444444433332222 134677889999999886544433333


Q ss_pred             cccCcHHHHH-HHHhcCCCHHHHHHHHHHHHH-hhcCc------chh----------------hHHhhhcccHHHHHHh-
Q 048793          457 ETEGALNGVI-EVLRSGATWEAKGNAAATIFS-LSGVH------AHR----------------KTLGRKTRVVKGLMDL-  511 (683)
Q Consensus       457 ~~~G~I~~Lv-~lL~~~~~~~~~~~Aa~~L~~-Ls~~~------~~~----------------~~i~~~~G~i~~Lv~l-  511 (683)
                      ....++-.+| .-++++.+..+|-.|..+|.+ |-...      +++                +.....-|++-.++.| 
T Consensus       173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly  252 (858)
T COG5215         173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY  252 (858)
T ss_pred             HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence            3323333333 345667677888888899887 43221      111                1111112333333333 


Q ss_pred             -------------------hcCCChhHHHHHHHHHHHhcCCc---------------chh--HHHHhcCchHHHHHHhcc
Q 048793          512 -------------------VKGGPTSSKRDALVAILNLAGDR---------------ETV--GRLVERGIVEIVAEAMDV  555 (683)
Q Consensus       512 -------------------L~~~~~~~~~~A~~aL~nLs~~~---------------~n~--~~iv~aG~V~~Lv~lL~~  555 (683)
                                         +++.++++.-.|+.--..+|...               .|.  .+..-+.++|.|+.+|..
T Consensus       253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~  332 (858)
T COG5215         253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK  332 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence                               23444444444433332333211               011  112234688999999963


Q ss_pred             -C---------chh-HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcC
Q 048793          556 -L---------PEE-SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVP  624 (683)
Q Consensus       556 -~---------~~~-~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~  624 (683)
                       +         +.+ +..||...+.++++.-....   .+-+-.-+++.+-..+|.|+.++-++-..........+  ..
T Consensus       333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pV---l~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~--V~  407 (858)
T COG5215         333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPV---LGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKI--VP  407 (858)
T ss_pred             cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHH---HHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhh--HH
Confidence             1         112 55666666766665433221   11222336678889999999999888764333333333  36


Q ss_pred             CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          625 GIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       625 G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      .++|.+..+..+..--+|..++|.+..+..+-
T Consensus       408 qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v  439 (858)
T COG5215         408 QALPGIENEMSDSCLWVKSTTAWCFGAIADHV  439 (858)
T ss_pred             hhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence            77899998888888999999999998888753

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.52  E-value=0.18  Score=38.15  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             cccccccccCCCCceec-CCccc--cchhhHHH-HHhcCCCCCCCCCCc
Q 048793          276 DFRCPISLELMRNPVVV-ATGQT--YDRQSISL-WIESGHNTCPKTGQT  320 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~-w~~~g~~~cP~~~~~  320 (683)
                      .+.||||.+.|.-||-. .|.|.  ||-...-+ ..+.+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            36899999999999954 77775  55532222 223445689999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.48  E-value=0.89  Score=39.57  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=54.5

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      ++.++..+...+.++|..|+.+|.++++..++.....   -..+...|..+..+.++++|.-|.-|-++|+
T Consensus        29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~---f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY---FNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            6677777888999999999999999998765543221   2467888899999999999999988877764

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.46  E-value=0.14  Score=54.07  Aligned_cols=52  Identities=29%  Similarity=0.595  Sum_probs=46.7

Q ss_pred             cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      ...|.+++..+.|||-+..|..|+-..|-.|+.. +.+-|.+++++...+|++
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk   91 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK   91 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence            4579999999999999999999999999999986 778899999998887765

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=91.36  E-value=0.58  Score=40.99  Aligned_cols=65  Identities=14%  Similarity=0.045  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhh--cCCChhHHHHHHHHHHHhcCC-cchhHHHHh
Q 048793          477 AKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLV--KGGPTSSKRDALVAILNLAGD-RETVGRLVE  542 (683)
Q Consensus       477 ~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL--~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~  542 (683)
                      .|....++|.+|+. ...++..+.. .|+||.++..-  .+.+|-.++.|+.+|.||+.. ++|+..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35667888999985 4568888888 78899999875  344678999999999999985 567776644

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.22  E-value=0.13  Score=54.82  Aligned_cols=59  Identities=20%  Similarity=0.421  Sum_probs=46.9

Q ss_pred             ccccccccCCCCce-----ecCCccccchhhHHHHHhc-CCCCCCCCCCccCCCCCcchHHHHHH
Q 048793          277 FRCPISLELMRNPV-----VVATGQTYDRQSISLWIES-GHNTCPKTGQTLAHTNLVTNTALKNL  335 (683)
Q Consensus       277 f~CPis~~~m~dPv-----~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~~~l~pn~~l~~~  335 (683)
                      -+||||++-..-|+     +..|||-|--+||++|+-. -...||.|.......++.|-+++|..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            57999998877664     5699999999999999942 23579999877667778888877664

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.15  E-value=2.1  Score=41.62  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCC-----CCCChhhHHHHHHHHHh
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDT-----ASRLPNLQVNAVTTILN  444 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~-----~~~d~~~qe~A~~aL~n  444 (683)
                      .....+++.|.+. ....  ..+..|+..-...+. --..+.+.||+..|+.+|..-.     ...+...+..++.+|..
T Consensus        66 ~~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   66 SSPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            3455677778765 3221  445555554444432 2335667899999999886320     11256788889999999


Q ss_pred             cccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 048793          445 LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS  489 (683)
Q Consensus       445 Ls~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls  489 (683)
                      +..+..+...+...++++..|+..|.+. +..++..++.+|..+|
T Consensus       143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  143 LMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             HTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            9888888888888889999999999987 7999999999998776

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.15  E-value=18  Score=38.09  Aligned_cols=221  Identities=13%  Similarity=0.080  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHH-HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIA-EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALN  463 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~-~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~  463 (683)
                      ++-.+.-|+.++.++.... +.|..+- +.-.--.++.+|+...+  +.++|-+.+-++.-|+.+..-.+.|-+....|.
T Consensus       162 ~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg--~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~  238 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVG--VKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN  238 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            4556667778888877644 4665543 33444567777776543  678999999999999877666655554445688


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcCC---ChhHHHHH---HHHH--------
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKGG---PTSSKRDA---LVAI--------  527 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~~---~~~~~~~A---~~aL--------  527 (683)
                      .++.+.+......+.+.+++++.+++.-  ...-....- .|-+.+-|++|..+   +.+.+.+-   -..|        
T Consensus       239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            8888888654567778899999999872  123333343 35456666666443   22221111   0011        


Q ss_pred             ------HHh-----cC---------CcchhHHHHhc--CchHHHHHHhccCchh-----HHHHHHHHHH-cCCcHHHHHH
Q 048793          528 ------LNL-----AG---------DRETVGRLVER--GIVEIVAEAMDVLPEE-----SVTILEAVVK-RGGLTAIVAA  579 (683)
Q Consensus       528 ------~nL-----s~---------~~~n~~~iv~a--G~V~~Lv~lL~~~~~~-----~~~aL~~L~~-l~~~~e~~~~  579 (683)
                            ..|     +-         ...|..++.+.  .++..|.++|......     +-.=+..+.. ..........
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K  397 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK  397 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence                  011     10         12366777664  5688899999754222     2222222222 2233334455


Q ss_pred             cCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          580 YNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       580 ~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      .|+=..+..+|.+.++++|-.|..++-.+-
T Consensus       398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         398 YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            588888999999999999999999876543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.07  E-value=0.46  Score=42.77  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=55.8

Q ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      .+..|+.+|....++.+...||.=|..++...++...+....|+-..++.++.+++++++..|+.++..|-
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            56779999965446888888999999988766655555555899999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.98  E-value=20  Score=36.49  Aligned_cols=233  Identities=14%  Similarity=0.106  Sum_probs=137.0

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCC-------C-CCCCChhhHHHHHHHHH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGP-------D-TASRLPNLQVNAVTTIL  443 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s-------~-~~~~d~~~qe~A~~aL~  443 (683)
                      +..++--|.   +++.++.|+-+|..--+..++-...+-.. |.+..|+.=.-+       . .......=..+|+..|.
T Consensus        28 ~~~~i~~l~---~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ  104 (293)
T KOG3036|consen   28 AYQLILSLV---SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ  104 (293)
T ss_pred             hhhHHHHhh---CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence            344444443   34566777777765544333333333332 555554432111       1 00012223467887788


Q ss_pred             hcccCchhHHHHhcccCcHHHHHHHHhc----CCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChh
Q 048793          444 NLSILEANKTRIMETEGALNGVIEVLRS----GATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTS  518 (683)
Q Consensus       444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~----~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~  518 (683)
                      -++.|++.|.....+ ..---|-.+|..    ....-.|-.+.+++..|...++ .-....-..++||..++.+..|+.-
T Consensus       105 cvASHpdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSel  183 (293)
T KOG3036|consen  105 CVASHPDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSEL  183 (293)
T ss_pred             HHhcCcchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHH
Confidence            889999999998886 443344455543    2235678889999999998765 3333333379999999999999998


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHh-c---CchHHH----HHHhccCc--hhHHHHHHHHHHcCCcHHHHHHcCc-hH---
Q 048793          519 SKRDALVAILNLAGDRETVGRLVE-R---GIVEIV----AEAMDVLP--EESVTILEAVVKRGGLTAIVAAYNT-IK---  584 (683)
Q Consensus       519 ~~~~A~~aL~nLs~~~~n~~~iv~-a---G~V~~L----v~lL~~~~--~~~~~aL~~L~~l~~~~e~~~~~g~-v~---  584 (683)
                      .+.-|..++..+-.++.+-..++. +   -+|..+    +.-|.+.+  .....++....+++.++..+.+.+. .|   
T Consensus       184 SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~L  263 (293)
T KOG3036|consen  184 SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQL  263 (293)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchh
Confidence            999999999988888777665543 2   222222    22222222  2355666666777888777666532 22   


Q ss_pred             ---HHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          585 ---KLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       585 ---~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                         .+.. +-..++.+|.+-...|.++|.
T Consensus       264 rd~tfs~-~l~~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  264 RDGTFSL-LLKDDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             ccchHHH-HHhcChhHHHHHHHHHHHhcc
Confidence               1212 223556666666666666654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.75  E-value=4.6  Score=48.45  Aligned_cols=159  Identities=12%  Similarity=0.076  Sum_probs=111.0

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHh-hhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRS-LSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~-La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      -|.-|..+++|+++ ..+.+---+..=.. ||-+ +..+.-+++.++-...+.+|... ..-+++-+..|+-+|..+..+
T Consensus       511 VGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~~~-~~~~~EqrtmaAFVLAviv~n  587 (1387)
T KOG1517|consen  511 VGIFPYVLKLLQSS-ARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLDPS-QAIPPEQRTMAAFVLAVIVRN  587 (1387)
T ss_pred             cchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEecCc-CCCCHHHHHHHHHHHHHHHcc
Confidence            45678889999887 55555443333333 4444 55777777777777777777763 111345556666666666544


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                       .-.++.-.+. +.|..-...|..+..+-.|+=.|-+|..|-.+ +++|..=.. .++.+.|..+|.+..++++..|+-|
T Consensus       588 f~lGQ~acl~~-~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFA  665 (1387)
T KOG1517|consen  588 FKLGQKACLNG-NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFA  665 (1387)
T ss_pred             cchhHHHhccc-cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHH
Confidence             4445555565 78887778887753477888888889888765 455555444 8999999999999999999999999


Q ss_pred             HHHhcCC
Q 048793          527 ILNLAGD  533 (683)
Q Consensus       527 L~nLs~~  533 (683)
                      |..+-.+
T Consensus       666 Lgtfl~~  672 (1387)
T KOG1517|consen  666 LGTFLSN  672 (1387)
T ss_pred             HHHHhcc
Confidence            9988663

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.69  E-value=0.17  Score=53.97  Aligned_cols=41  Identities=22%  Similarity=0.575  Sum_probs=36.1

Q ss_pred             ccccccccCCCC---ceecCCccccchhhHHHHHhcCC--CCCCCC
Q 048793          277 FRCPISLELMRN---PVVVATGQTYDRQSISLWIESGH--NTCPKT  317 (683)
Q Consensus       277 f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~--~~cP~~  317 (683)
                      |.|||..|--.|   |+.+.|||..+|.+|.+-...|.  ..||.|
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence            799999887765   88999999999999999988876  679888

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=90.66  E-value=0.98  Score=39.29  Aligned_cols=66  Identities=11%  Similarity=0.144  Sum_probs=47.4

Q ss_pred             cccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh--cCchHHHHHHhccCchhHHHHHHHHHH
Q 048793          502 TRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE--RGIVEIVAEAMDVLPEESVTILEAVVK  569 (683)
Q Consensus       502 ~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--aG~V~~Lv~lL~~~~~~~~~aL~~L~~  569 (683)
                      .-.+++++..+.+.+.+++..|+.+|+|++....  ..++.  ..+...|.+++.+..+.+..+...|.+
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~   93 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAELLDR   93 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            3589999999999999999999999999987543  33332  356677777776554455555555543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.47  E-value=19  Score=41.72  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-  448 (683)
                      +..+..+...|.+. |+-.+.-|+..+.++-..  ++++.+.  .=||   ++|.++..  ..-++..|+-+|+.|-.. 
T Consensus       110 klvin~iknDL~sr-n~~fv~LAL~~I~niG~r--e~~ea~~--~DI~---KlLvS~~~--~~~vkqkaALclL~L~r~s  179 (938)
T KOG1077|consen  110 KLVINSIKNDLSSR-NPTFVCLALHCIANIGSR--EMAEAFA--DDIP---KLLVSGSS--MDYVKQKAALCLLRLFRKS  179 (938)
T ss_pred             HHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccH--hHHHHhh--hhhH---HHHhCCcc--hHHHHHHHHHHHHHHHhcC
Confidence            33445556667777 788888888888887543  2444433  2244   66766611  234666666666666432 


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      ++    ++...+-...++++|... +..+...+...+-.|+..
T Consensus       180 pD----l~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~  217 (938)
T KOG1077|consen  180 PD----LVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKK  217 (938)
T ss_pred             cc----ccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHc
Confidence            22    222225678888888766 466666777777777653

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.28  E-value=2.7  Score=48.74  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      +.+++..... |.+.+.-.---|.+.++..++-     ..+++..++.=-.++    ++.++..|+..+.-+-.+     
T Consensus        52 ~dvvk~~~T~-dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~----np~iR~lAlrtm~~l~v~-----  116 (734)
T KOG1061|consen   52 PDVVKCMQTR-DLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDP----NPLIRALALRTMGCLRVD-----  116 (734)
T ss_pred             HHHHhhcccC-CchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCC----CHHHHHHHhhceeeEeeh-----
Confidence            3445555555 6665555555666666666522     124555554444444    899998888877665432     


Q ss_pred             HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793          454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD  533 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  533 (683)
                      .+.+.  ...+|...++.+ ++.+|..|+..+.++-.  .+...... .|.++.|-.++.+.++.+..+|+.+|..+...
T Consensus       117 ~i~ey--~~~Pl~~~l~d~-~~yvRktaa~~vakl~~--~~~~~~~~-~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  117 KITEY--LCDPLLKCLKDD-DPYVRKTAAVCVAKLFD--IDPDLVED-SGLVDALKDLLSDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HHHHH--HHHHHHHhccCC-ChhHHHHHHHHHHHhhc--CChhhccc-cchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            33332  677899999888 68888887777776643  33344334 89999999999988899999999999999765


Q ss_pred             cc
Q 048793          534 RE  535 (683)
Q Consensus       534 ~~  535 (683)
                      +.
T Consensus       191 ~~  192 (734)
T KOG1061|consen  191 HP  192 (734)
T ss_pred             CC
Confidence            54

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=90.28  E-value=10  Score=45.19  Aligned_cols=134  Identities=13%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc--
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE--  449 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~--  449 (683)
                      .+.+++.|+   ++-.+..|++++..++...-. +...+. ..++|.|..+++..    ....+...+.++..|..+-  
T Consensus       613 L~il~eRl~---nEiTRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~----~r~lr~~~l~a~~~L~~~~~~  684 (1233)
T KOG1824|consen  613 LPILLERLG---NEITRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRKN----QRALRLATLTALDKLVKNYSD  684 (1233)
T ss_pred             HHHHHHHHh---chhHHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence            445555553   567788899999988765421 222222 35788899999887    6667777777777665432  


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS  518 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~  518 (683)
                      .......+  -++..+-.++... +....++|...|..+.........-.. .-.++.++.+++++.-.
T Consensus       685 ~~~~~~~e--~vL~el~~Lises-dlhvt~~a~~~L~tl~~~~ps~l~~~~-~~iL~~ii~ll~Spllq  749 (1233)
T KOG1824|consen  685 SIPAELLE--AVLVELPPLISES-DLHVTQLAVAFLTTLAIIQPSSLLKIS-NPILDEIIRLLRSPLLQ  749 (1233)
T ss_pred             cccHHHHH--HHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcccHHHHHHh-hhhHHHHHHHhhCcccc
Confidence            22222222  2455555566555 678888999999999887776665554 67899999999977543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=90.10  E-value=12  Score=39.80  Aligned_cols=174  Identities=12%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVK  506 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~  506 (683)
                      ....++.++..|.++....-.-..+.+ ..-.+..+.+.++.|. .+.+..|+.++.-|+..   .+....+..  ...|
T Consensus        56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~  132 (309)
T PF05004_consen   56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGEDSEEIFE--ELKP  132 (309)
T ss_pred             CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHH
Confidence            456666666666665422111111111 1135677888888884 56677787777766644   234445543  6889


Q ss_pred             HHHHhhcCCCh--hHHHHHHHHHHHhcC---Cc-chhHHHHhcCchHHH--HHHhcc-C----------chh---HHHHH
Q 048793          507 GLMDLVKGGPT--SSKRDALVAILNLAG---DR-ETVGRLVERGIVEIV--AEAMDV-L----------PEE---SVTIL  564 (683)
Q Consensus       507 ~Lv~lL~~~~~--~~~~~A~~aL~nLs~---~~-~n~~~iv~aG~V~~L--v~lL~~-~----------~~~---~~~aL  564 (683)
                      .|..++.+++.  ..+..++.+|.-++.   .+ +......+  .+..+  ...+.. +          +..   +..++
T Consensus       133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW  210 (309)
T PF05004_consen  133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW  210 (309)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence            99999987753  344455555555433   22 22221111  11211  111111 1          112   55566


Q ss_pred             HHHHHcCCcHHHHHH-cCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          565 EAVVKRGGLTAIVAA-YNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       565 ~~L~~l~~~~e~~~~-~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      +.|............ ...++.|+.+|.+.+..+|-.|-.+|.-|.
T Consensus       211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            666655544333322 246899999999999999988877766554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.03  E-value=4.4  Score=45.89  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=99.1

Q ss_pred             cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793          415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      .|..++.+|++.    .+.++++|+.....|+.--.++   +.+..- |.  .|.+-|... .+++......+++.+...
T Consensus       605 ivStiL~~L~~k----~p~vR~~aadl~~sl~~vlk~c~e~~~l~kl-g~--iLyE~lge~-ypEvLgsil~Ai~~I~sv  676 (975)
T COG5181         605 IVSTILKLLRSK----PPDVRIRAADLMGSLAKVLKACGETKELAKL-GN--ILYENLGED-YPEVLGSILKAICSIYSV  676 (975)
T ss_pred             HHHHHHHHhcCC----CccHHHHHHHHHHHHHHHHHhcchHHHHHHH-hH--HHHHhcCcc-cHHHHHHHHHHHHHHhhh
Confidence            455667788888    8899999998888776432211   122222 32  245555544 688888777777777665


Q ss_pred             cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhcc-CchhHHHHHHHHHH
Q 048793          492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDV-LPEESVTILEAVVK  569 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~-~~~~~~~aL~~L~~  569 (683)
                      ...+..---..|++|.|..+|++....+..+.+..+..+|.+.....-.-+ .-+---|+++|.+ +.+....|...+..
T Consensus       677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            443322211268999999999998888889999999999886543211111 1122336666654 34445555555443


Q ss_pred             cCCcHHHHHHcCchHHHHHHHhc
Q 048793          570 RGGLTAIVAAYNTIKKLCILLRE  592 (683)
Q Consensus       570 l~~~~e~~~~~g~v~~Lv~lL~~  592 (683)
                      ++      .++|--..|.-+|.+
T Consensus       757 Is------~aiGPqdvL~~Llnn  773 (975)
T COG5181         757 IS------RAIGPQDVLDILLNN  773 (975)
T ss_pred             HH------hhcCHHHHHHHHHhc
Confidence            22      233444556666654

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.87  E-value=3.1  Score=42.74  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-CchhHHHHhcccCcHHHH
Q 048793          387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEANKTRIMETEGALNGV  465 (683)
Q Consensus       387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~L  465 (683)
                      .....|+..|.-++--++..|..+.+..++..|+.+|...   ..+.++..++.+|..+-. +..|....-+. +|+..+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~---~~~~i~~a~L~tLv~iLld~p~N~r~FE~~-~Gl~~v  181 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS---NPPAIQSACLDTLVCILLDSPENQRDFEEL-NGLSTV  181 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC---CCchHHHHHHHHHHHHHHcChHHHHHHHHh-CCHHHH
Confidence            3456778888888888888999999999999999999543   167899999988877655 46776666666 999999


Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHh
Q 048793          466 IEVLRSG-ATWEAKGNAAATIFSL  488 (683)
Q Consensus       466 v~lL~~~-~~~~~~~~Aa~~L~~L  488 (683)
                      +.++++. .+.+++-.....|+-.
T Consensus       182 ~~llk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  182 CSLLKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             HHHHccccccHHHhHHHHHHHHHH
Confidence            9999864 3466776777766533

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.79  E-value=13  Score=45.38  Aligned_cols=217  Identities=15%  Similarity=0.148  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc--CchhHHHHhcccC
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSI--LEANKTRIMETEG  460 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--~~~~k~~I~~~~G  460 (683)
                      +..+|.++.+.|..++.. +.......+.  ..-..|.+-.++.    +..++..++.+|..|-.  +.+....|...  
T Consensus       667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~----~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--  739 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS----SSPAQASRLKCLKRLLKLLSAEHCDLIPKL--  739 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHhccHHHHHHHHHH--
Confidence            788899999999988876 2232222221  2222333444444    55677777777666532  23555555543  


Q ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----CcchhhHHhhhcccHHHHHHhhcCC--ChhHHHHH--HHHHHHhcC
Q 048793          461 ALNGVIEVLRSGATWEAKGNAAATIFSLSG----VHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKRDA--LVAILNLAG  532 (683)
Q Consensus       461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~----~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~~A--~~aL~nLs~  532 (683)
                       |+-++-.++.- +..++++|-.+|..+..    .+.....  . ...|...+.++..|  .......|  +.++..+..
T Consensus       740 -I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  740 -IPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             -HHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence             55555555555 78999999999999983    1111111  1 22566666666554  22222222  344444333


Q ss_pred             CcchhHHHHhcCchHHHHHHh----cc-CchhHHHHHHHHHHcC-CcHHHHHHc---CchHHHHHHHhcCChHHHHHHHH
Q 048793          533 DRETVGRLVERGIVEIVAEAM----DV-LPEESVTILEAVVKRG-GLTAIVAAY---NTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       533 ~~~n~~~iv~aG~V~~Lv~lL----~~-~~~~~~~aL~~L~~l~-~~~e~~~~~---g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                         +-..+.+.+.++.+++.+    .+ .++.+..|++.+..+. .-++.....   .-++.+..+++..+...+.....
T Consensus       815 ---e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  815 ---EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             ---HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence               223334444555555544    33 3566777888776543 334443332   13566666677778888888888


Q ss_pred             HHHHHHhcCCchH
Q 048793          604 TLVTICRKGGSEM  616 (683)
Q Consensus       604 aL~~L~~~~~~~~  616 (683)
                      .|-.|++..+-+.
T Consensus       892 LlekLirkfg~~e  904 (1176)
T KOG1248|consen  892 LLEKLIRKFGAEE  904 (1176)
T ss_pred             HHHHHHHHhCHHH
Confidence            8888887665433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=89.76  E-value=5.5  Score=46.10  Aligned_cols=164  Identities=15%  Similarity=0.081  Sum_probs=101.2

Q ss_pred             HHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH--HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793          417 ALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK--TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH  494 (683)
Q Consensus       417 p~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k--~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~  494 (683)
                      ..+++.|.+.    .+.++..|+..+..++.--.++  ..++..-|.  .|.+.|... .+++.-....+|..+.....-
T Consensus       802 stiL~rLnnk----sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  802 STILWRLNNK----SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             HHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccc
Confidence            3445667777    8899999999888887543332  122322243  356677665 688888888888877665432


Q ss_pred             hhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793          495 RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL-PEESVTILEAVVKRGG  572 (683)
Q Consensus       495 ~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~  572 (683)
                      -...--..|.+|.|..+|++....+.++++..+..+|.......-+-+ .-+---|+++|... .+....|...+..++ 
T Consensus       875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia-  953 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA-  953 (1172)
T ss_pred             cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-
Confidence            222222268999999999998888999999999999986543222211 12223466777643 344445555444322 


Q ss_pred             cHHHHHHcCchHHHHHHHhcC
Q 048793          573 LTAIVAAYNTIKKLCILLREG  593 (683)
Q Consensus       573 ~~e~~~~~g~v~~Lv~lL~~~  593 (683)
                           .++|--..|..+|.+-
T Consensus       954 -----kaIGPqdVLatLlnnL  969 (1172)
T KOG0213|consen  954 -----KAIGPQDVLATLLNNL  969 (1172)
T ss_pred             -----HhcCHHHHHHHHHhcc
Confidence                 3345555666666543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=89.53  E-value=2.3  Score=41.94  Aligned_cols=101  Identities=12%  Similarity=0.026  Sum_probs=71.6

Q ss_pred             HhCcHHHHHHhhCCCCC--CCChhhHHHHHHHHHhcccCchhHHHHhccc-Cc--HHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793          412 EAGAIALLARHLGPDTA--SRLPNLQVNAVTTILNLSILEANKTRIMETE-GA--LNGVIEVLRSGATWEAKGNAAATIF  486 (683)
Q Consensus       412 ~~G~Ip~Lv~lL~s~~~--~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~-G~--I~~Lv~lL~~~~~~~~~~~Aa~~L~  486 (683)
                      +..++..|+.++..+..  .....-..+.+.++.|++..++.|.-+.... +.  |..|+.++.+. +..-|.-++++|.
T Consensus        50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~Ir  128 (192)
T PF04063_consen   50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIR  128 (192)
T ss_pred             hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHH
Confidence            34578888887766311  0123456788889999999999999888542 33  66677777777 7888899999999


Q ss_pred             HhhcCcchhhHHhhh--cccHHHHHHhhc
Q 048793          487 SLSGVHAHRKTLGRK--TRVVKGLMDLVK  513 (683)
Q Consensus       487 ~Ls~~~~~~~~i~~~--~G~i~~Lv~lL~  513 (683)
                      |+|...+....+...  .+++|.|+--|.
T Consensus       129 NccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen  129 NCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999988766666542  256666665554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=88.77  E-value=21  Score=37.94  Aligned_cols=188  Identities=14%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC---cchhHH
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD---RETVGR  539 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~  539 (683)
                      ..+..|... +...|+.+...|..+....-.-..+. ...-.+..+.+.++.|..+-..-|+.++.-|+..   ......
T Consensus        47 ~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   47 EAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            344444444 57888888888887765443222222 1134677778888888766666677777777665   234444


Q ss_pred             HHhcCchHHHHHHhccCch---h---HHHHHHHHHHcCCcH-HHHHH-cCchHHHHHH--Hhc-CC---------hHHHH
Q 048793          540 LVERGIVEIVAEAMDVLPE---E---SVTILEAVVKRGGLT-AIVAA-YNTIKKLCIL--LRE-GS---------DTSRE  599 (683)
Q Consensus       540 iv~aG~V~~Lv~lL~~~~~---~---~~~aL~~L~~l~~~~-e~~~~-~g~v~~Lv~l--L~~-~s---------~~~ke  599 (683)
                      +.+ ...|.|...+.++..   .   +..||++++.+++.. +.... ......+...  ++. ++         +...-
T Consensus       126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~  204 (309)
T PF05004_consen  126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA  204 (309)
T ss_pred             HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence            443 567888888875421   1   344667666655432 22221 1122322222  111 11         23444


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .|+.+-.-|...-+...+...+  ...++.|..++.+.+..+|--|...|-++-+.
T Consensus       205 aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  205 AALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4443322222322332233322  35689999999999999999999999888663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=88.65  E-value=37  Score=41.29  Aligned_cols=255  Identities=11%  Similarity=0.084  Sum_probs=146.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.+..|.+.|+.. +..++..|++-+..++...+   ..+++ .+|...+.++.-.   .+...-..|+.+|..|+.-
T Consensus       339 vE~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~---e~~~aWHgacLaLAELA~r  410 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPA---EDDSAWHGACLALAELALR  410 (1133)
T ss_pred             HHHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcC---CchhHHHHHHHHHHHHHhc
Confidence            346788888888888 99999999999999999887   33332 3566667755433   1456677888899888753


Q ss_pred             chhHHHHhcccCcHHHHHHHHh----c---CCCHHHHHHHHHHHHHhhcCcchh--hHHhhhcccHHHHH-HhhcCCChh
Q 048793          449 EANKTRIMETEGALNGVIEVLR----S---GATWEAKGNAAATIFSLSGVHAHR--KTLGRKTRVVKGLM-DLVKGGPTS  518 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~----~---~~~~~~~~~Aa~~L~~Ls~~~~~~--~~i~~~~G~i~~Lv-~lL~~~~~~  518 (683)
                      .--......  .++|.+++-|.    .   .....+|..||-+++.++...+..  ..+.  ......|+ ..+-+....
T Consensus       411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l--~~L~s~LL~~AlFDrevn  486 (1133)
T KOG1943|consen  411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVL--QSLASALLIVALFDREVN  486 (1133)
T ss_pred             CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHH--HHHHHHHHHHHhcCchhh
Confidence            221111111  35566665553    1   113578899999999988754332  1111  12333333 334455567


Q ss_pred             HHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc----hhHHHHHHHHHH-cCCcHHHHHHcCchHHHHHH----
Q 048793          519 SKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP----EESVTILEAVVK-RGGLTAIVAAYNTIKKLCIL----  589 (683)
Q Consensus       519 ~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~----~~~~~aL~~L~~-l~~~~e~~~~~g~v~~Lv~l----  589 (683)
                      .+..|..|+........|.         |.=++++..-+    ....++...|+. ++..+      |-...++.-    
T Consensus       487 cRRAAsAAlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~------~y~~~~f~~L~t~  551 (1133)
T KOG1943|consen  487 CRRAASAALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFS------GYREPVFNHLLTK  551 (1133)
T ss_pred             HhHHHHHHHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhh------hHHHHHHHHHHhc
Confidence            8888888887765544443         22233332111    112233333322 12111      222222222    


Q ss_pred             -HhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHH----HHHHHHHHHHHhhh
Q 048793          590 -LREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARAR----RKAAALLRILRRWA  656 (683)
Q Consensus       590 -L~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k----~kA~~lL~~l~~~~  656 (683)
                       +.+-+...++.|+++|..|....+.      ....++++.|+.-..+++...+    ..+..++..++...
T Consensus       552 Kv~HWd~~irelaa~aL~~Ls~~~pk------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~  617 (1133)
T KOG1943|consen  552 KVCHWDVKIRELAAYALHKLSLTEPK------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE  617 (1133)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhhHH------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence             3456889999999999998875432      1234677777766655554333    44555665555544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=88.35  E-value=17  Score=37.32  Aligned_cols=229  Identities=14%  Similarity=0.108  Sum_probs=131.4

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHh-------hCCCCC-CCChhhHHHHHHHHHhcccCchhHHHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARH-------LGPDTA-SRLPNLQVNAVTTILNLSILEANKTRI  455 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~l-------L~s~~~-~~d~~~qe~A~~aL~nLs~~~~~k~~I  455 (683)
                      +++.++.|+.+|..--...++-.-.+-. -|.+..|+.=       |..+.- .....-..+|++.|.-++.|++.|...
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            6788999888887654433322223333 3777777542       222200 001122356777777789999999999


Q ss_pred             hcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          456 METEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       456 ~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      .++ ...--|..+|+...    -...|-.+.+++..|...++  .-.-+.. .+.||..++.+..|+.-.+..|.-++..
T Consensus        88 l~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   88 LKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            987 76666666776431    14567788899999987543  3333334 7899999999999988788888888777


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcC-chHHHHH-HHhcCChHHHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYN-TIKKLCI-LLREGSDTSRESAAATLVT  607 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g-~v~~Lv~-lL~~~s~~~ke~A~~aL~~  607 (683)
                      +-.++.+-..+                              |...+...+.+ ....++. +....|++.-++.+++-..
T Consensus       166 IL~dd~GL~yi------------------------------C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlR  215 (262)
T PF04078_consen  166 ILLDDVGLNYI------------------------------CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLR  215 (262)
T ss_dssp             HHHSHHHHHHH------------------------------TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred             HHcchhHHHHH------------------------------hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence            76655443333                              33333332221 1222332 3455677888888888888


Q ss_pred             HHhcCCchHHHHHHhcCCcHHHHHHHhhc--------CCHHHHHHHHHHHHHHH
Q 048793          608 ICRKGGSEMVADIAAVPGIERVIWELMES--------GTARARRKAAALLRILR  653 (683)
Q Consensus       608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~--------~~~~~k~kA~~lL~~l~  653 (683)
                      |+.+..   .+..+..     .|=..+.+        +++.+|+.-..++.++.
T Consensus       216 Lsdnpr---ar~aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  216 LSDNPR---AREALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             HTTSTT---HHHHHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred             HccCHH---HHHHHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            887543   2332321     11122333        36778888777777654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=87.63  E-value=7.5  Score=42.88  Aligned_cols=132  Identities=13%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCc---hhHHHHHHhCcHHHHHHhhCCCCC---CCChhhHHHHHHHHHhcccCc
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDS---DSRACIAEAGAIALLARHLGPDTA---SRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~---~nr~~i~~~G~Ip~Lv~lL~s~~~---~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +..+++.. +.+.|..|+--...+.+.++   .||+.+.++-+.+.+=++|.+...   ..|...+..++++|.-.|.++
T Consensus        16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            44455555 67888999998889988765   468889999888999999987532   124445566777777777776


Q ss_pred             hh--HHHHhcccCcHHHHHHHHhcCCCHH------HHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh
Q 048793          450 AN--KTRIMETEGALNGVIEVLRSGATWE------AKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV  512 (683)
Q Consensus       450 ~~--k~~I~~~~G~I~~Lv~lL~~~~~~~------~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL  512 (683)
                      +-  ...|+.   .||.|.+++..+.++.      ....+-.+|...+..+.....+.. .|+++.+-++-
T Consensus        95 ElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y  161 (698)
T KOG2611|consen   95 ELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMY  161 (698)
T ss_pred             hhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHH
Confidence            53  345554   4999999998765554      667888999999999888777777 79999988764

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.59  E-value=0.61  Score=48.75  Aligned_cols=46  Identities=20%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      ++-.||||-----..|+.||||.-|..||.+++.. ...|=.|+...
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv  466 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV  466 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence            78899999766667789999999999999999984 66788887553

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=0.28  Score=53.34  Aligned_cols=51  Identities=22%  Similarity=0.431  Sum_probs=39.1

Q ss_pred             CCCcccccccccCC-----------------CCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          273 VPADFRCPISLELM-----------------RNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       273 ~p~~f~CPis~~~m-----------------~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      +...--|+||+...                 ++-+++||.|.|-|.|+++|.+.-.-.||+|+.+|.+
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            44556799987532                 2345679999999999999999645689999998864

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.38  E-value=66  Score=37.65  Aligned_cols=251  Identities=12%  Similarity=0.105  Sum_probs=149.7

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-C
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-L  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~  448 (683)
                      |+..+.++.+|+++ -+-++..|+..|..+.-..++.   +  .-.+|.|+.-|..+    |+.++-.|+.+++.|+. +
T Consensus       143 RDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDp----Dp~V~SAAV~VICELArKn  212 (877)
T KOG1059|consen  143 RDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDP----DPSVVSAAVSVICELARKN  212 (877)
T ss_pred             HHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCC----CchHHHHHHHHHHHHHhhC
Confidence            55566788899988 8999999999888776655422   2  24579999999999    99999999999999995 4


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALVAI  527 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~aL  527 (683)
                      +.|.-.      .-|.+.++|....+-=..........+|+-.   -.++|.  ..+++|.+++.+.... ..-.++.++
T Consensus       213 PknyL~------LAP~ffkllttSsNNWmLIKiiKLF~aLtpl---EPRLgK--KLieplt~li~sT~AmSLlYECvNTV  281 (877)
T KOG1059|consen  213 PQNYLQ------LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL---EPRLGK--KLIEPITELMESTVAMSLLYECVNTV  281 (877)
T ss_pred             Cccccc------ccHHHHHHHhccCCCeehHHHHHHHhhcccc---Cchhhh--hhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            555432      2356777776442322333344555555544   345554  5899999999875432 333344333


Q ss_pred             H--HhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHH--cC-CcHHHHHHcCchHHHHHHHhcCChHHHHHHH
Q 048793          528 L--NLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVK--RG-GLTAIVAAYNTIKKLCILLREGSDTSRESAA  602 (683)
Q Consensus       528 ~--nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~--l~-~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~  602 (683)
                      .  +++....+....+.. +|..|-.++.+ .+--.+.++.|+.  +. .++..+.+-  -..+++.|...++.+|-.|.
T Consensus       282 Va~s~s~g~~d~~asiqL-CvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa~--kdlIlrcL~DkD~SIRlrAL  357 (877)
T KOG1059|consen  282 VAVSMSSGMSDHSASIQL-CVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQAH--KDLILRCLDDKDESIRLRAL  357 (877)
T ss_pred             eeehhccCCCCcHHHHHH-HHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHHh--HHHHHHHhccCCchhHHHHH
Confidence            3  333333233322221 23344444432 2222334444332  22 455544432  35677888889999999999


Q ss_pred             HHHHHHHhcCCchHHHHHHhcCCcHHHHHHH-h-hcCCHHHHHHHHHHHHHHHh
Q 048793          603 ATLVTICRKGGSEMVADIAAVPGIERVIWEL-M-ESGTARARRKAAALLRILRR  654 (683)
Q Consensus       603 ~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~L-l-~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ..|..+....   .+.++      ++.|... . .+|+.---+-+..++..++.
T Consensus       358 dLl~gmVskk---Nl~eI------Vk~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  358 DLLYGMVSKK---NLMEI------VKTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             HHHHHHhhhh---hHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            9998887632   23332      3444432 2 22333333566667777665

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.15  E-value=67  Score=37.50  Aligned_cols=118  Identities=14%  Similarity=0.231  Sum_probs=80.0

Q ss_pred             HHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHh
Q 048793          391 DAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR  470 (683)
Q Consensus       391 ~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~  470 (683)
                      ..+.+.-+|+.+-+.....+.+  ++..|-.+|.+.    ...++-.|+..+..|+..+.....+-..   .+.++..|+
T Consensus       308 aVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r----E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLk  378 (938)
T KOG1077|consen  308 AVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR----ETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLK  378 (938)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc----cccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhc
Confidence            3344444555555545555543  466778888887    7788888888888887765555544433   778899998


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          471 SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       471 ~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                      ...|..+|+.|+..|+.+|.. +|...|+.      .|++.|.+.+...+++-+
T Consensus       379 terDvSirrravDLLY~mcD~-~Nak~IV~------elLqYL~tAd~sireeiv  425 (938)
T KOG1077|consen  379 TERDVSIRRRAVDLLYAMCDV-SNAKQIVA------ELLQYLETADYSIREEIV  425 (938)
T ss_pred             cccchHHHHHHHHHHHHHhch-hhHHHHHH------HHHHHHhhcchHHHHHHH
Confidence            666899999999999998765 45555543      467777666666655443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=86.82  E-value=14  Score=35.69  Aligned_cols=111  Identities=15%  Similarity=0.172  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcH-H
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGAL-N  463 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I-~  463 (683)
                      ++.+|.+++-.+..++...+.    ++ ...+|.+...|.++    ++.++..|+.+|..|...+--|.     .|-+ .
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~----~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~   66 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDE----DPLVRKTALLVLSHLILEDMIKV-----KGQLFS   66 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHcCceee-----hhhhhH
Confidence            467889999999999887752    22 24688999999999    99999999999999876543332     1333 6


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG  514 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~  514 (683)
                      .++..|... +++++..|...+..+.... +...+.   ..++.++.-|.+
T Consensus        67 ~~l~~l~D~-~~~Ir~~A~~~~~e~~~~~-~~~~i~---~~~~e~i~~l~~  112 (178)
T PF12717_consen   67 RILKLLVDE-NPEIRSLARSFFSELLKKR-NPNIIY---NNFPELISSLNN  112 (178)
T ss_pred             HHHHHHcCC-CHHHHHHHHHHHHHHHHhc-cchHHH---HHHHHHHHHHhC
Confidence            677788666 7999999999999887753 222222   235555555543

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=86.67  E-value=0.47  Score=48.61  Aligned_cols=48  Identities=21%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             cccccc-cCCCCceec----CCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793          278 RCPISL-ELMRNPVVV----ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN  325 (683)
Q Consensus       278 ~CPis~-~~m~dPv~~----~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~  325 (683)
                      .||+|. ..+..|-+.    +|||+.|-+|.-.-|..|...||.|+.+|....
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n   54 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN   54 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence            488885 666666432    999999999999999999999999998876543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=86.65  E-value=0.81  Score=34.43  Aligned_cols=40  Identities=23%  Similarity=0.518  Sum_probs=30.2

Q ss_pred             cccccc--CCCCceecCCc-----cccchhhHHHHHhc-CCCCCCCCC
Q 048793          279 CPISLE--LMRNPVVVATG-----QTYDRQSISLWIES-GHNTCPKTG  318 (683)
Q Consensus       279 CPis~~--~m~dPv~~~~g-----~ty~r~~I~~w~~~-g~~~cP~~~  318 (683)
                      |-||++  --.+|.+.||.     +.+=+.|+++|+.. +..+||.|+
T Consensus         2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            667765  44677777874     56889999999975 467899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.57  E-value=0.43  Score=50.97  Aligned_cols=49  Identities=14%  Similarity=0.349  Sum_probs=40.4

Q ss_pred             CCCcccccccccCCCCce-----e---cCCccccchhhHHHHHhcC------CCCCCCCCCcc
Q 048793          273 VPADFRCPISLELMRNPV-----V---VATGQTYDRQSISLWIESG------HNTCPKTGQTL  321 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv-----~---~~~g~ty~r~~I~~w~~~g------~~~cP~~~~~l  321 (683)
                      .-.+..|-||++...+++     .   -+|.|+||-.||.+|-...      ...||.|+.+.
T Consensus       158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            357899999999999988     3   5799999999999998432      35799998764

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.28  E-value=29  Score=40.78  Aligned_cols=205  Identities=13%  Similarity=0.105  Sum_probs=127.2

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR  454 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~  454 (683)
                      .|..+|.+. ....+.+|...|-.+...+. +     -....|..|+...+.    +.+++...---|..-+..+.+-..
T Consensus        39 dL~~lLdSn-kd~~KleAmKRIia~iA~G~-d-----vS~~Fp~VVKNVask----n~EVKkLVyvYLlrYAEeqpdLAL  107 (968)
T KOG1060|consen   39 DLKQLLDSN-KDSLKLEAMKRIIALIAKGK-D-----VSLLFPAVVKNVASK----NIEVKKLVYVYLLRYAEEQPDLAL  107 (968)
T ss_pred             HHHHHHhcc-ccHHHHHHHHHHHHHHhcCC-c-----HHHHHHHHHHHhhcc----CHHHHHHHHHHHHHHhhcCCCcee
Confidence            477888887 66667777766554444343 2     235678899999998    999998887777777655443222


Q ss_pred             HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-
Q 048793          455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD-  533 (683)
Q Consensus       455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-  533 (683)
                      +     -|..+-+-|+.. ++..|..|.++|..+      |..+.. .=.+-++-+...+..+.+++.|+.||-.|-.- 
T Consensus       108 L-----SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd  174 (968)
T KOG1060|consen  108 L-----SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD  174 (968)
T ss_pred             e-----eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence            1     356677778777 688887777777654      333322 12222333445666788999999999998654 


Q ss_pred             cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHc-CchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          534 RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAY-NTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       534 ~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~-g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      ++-+.++++     .+=.+|.+. +-++-.|+.+.-..|  ++...-+ +-...|..++......+|-....+|..-|+
T Consensus       175 ~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evC--PerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  175 PEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVC--PERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             hhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhc--hhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            444544433     333445543 444555666555444  3333322 234556666666677777777777776665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=86.20  E-value=0.87  Score=30.47  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=25.3

Q ss_pred             cHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          504 VVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       504 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      .+|.+++++.+++++++..|+.+|..++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=85.58  E-value=1  Score=30.19  Aligned_cols=29  Identities=14%  Similarity=0.223  Sum_probs=25.2

Q ss_pred             cHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      .+|.+++++.++    ++.++..|+.+|.+++.
T Consensus         1 llp~l~~~l~D~----~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP----SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S----SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC----CHHHHHHHHHHHHHHHh
Confidence            379999999999    99999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.18  E-value=0.2  Score=57.31  Aligned_cols=47  Identities=17%  Similarity=0.430  Sum_probs=39.5

Q ss_pred             cccccccccCCCCceec---CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          276 DFRCPISLELMRNPVVV---ATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .-.||+|..-+.|..+.   .|+|.||..||..|..- ..+||.++..+..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            45899999888887754   89999999999999974 6799999977653

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.16  E-value=75  Score=37.59  Aligned_cols=136  Identities=16%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCC------------------
Q 048793          511 LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGG------------------  572 (683)
Q Consensus       511 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~------------------  572 (683)
                      +|.+.++.+...++.+.|.|+...++      .+++.+|+.+|.+..+...-.|..++.++.                  
T Consensus       295 Ll~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss  368 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS  368 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence            45566777888889999998775422      245789999998765554444444433321                  


Q ss_pred             cHHHH-----------HHcCchHHHHHHHhc---CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCC
Q 048793          573 LTAIV-----------AAYNTIKKLCILLRE---GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGT  638 (683)
Q Consensus       573 ~~e~~-----------~~~g~v~~Lv~lL~~---~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~  638 (683)
                      .+..+           ...+.+..+.+-++.   .+++  +-|+.+..+|.++...  .  .-...-.+.-|+.|+.+-+
T Consensus       369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~--~faa~aV~AiGrCA~~--~--~sv~~tCL~gLv~Llsshd  442 (968)
T KOG1060|consen  369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDR--SFAAAAVKAIGRCASR--I--GSVTDTCLNGLVQLLSSHD  442 (968)
T ss_pred             CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHh--h--CchhhHHHHHHHHHHhccc
Confidence            11110           001222333222221   2222  3555555566543221  0  1112345677888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 048793          639 ARARRKAAALLRILRRWAAG  658 (683)
Q Consensus       639 ~~~k~kA~~lL~~l~~~~~~  658 (683)
                      ..+-..|...++.|-...+.
T Consensus       443 e~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  443 ELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             chhHHHHHHHHHHHHhhChH
Confidence            88777777777776554333

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=85.11  E-value=0.39  Score=50.92  Aligned_cols=45  Identities=20%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             cccccccCCCCceecCCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793          278 RCPISLELMRNPVVVATGQTYDRQSISLWIES-GHNTCPKTGQTLA  322 (683)
Q Consensus       278 ~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~  322 (683)
                      .|-||-+-=+|=-+-||||-.|-.|+..|.++ ++.+||.|+-.+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            79999998888667799999999999999964 5789999986554

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=84.91  E-value=0.71  Score=34.44  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=20.0

Q ss_pred             ccccccCC--CCceec--CCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          279 CPISLELM--RNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       279 CPis~~~m--~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      ||+|.+.|  +|--+.  +||.-+||.|-.+-...++..||-||+++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888777  332334  66777777775555555678999999875

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.76  E-value=4.8  Score=41.68  Aligned_cols=173  Identities=14%  Similarity=0.170  Sum_probs=105.6

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC--cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG--AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G--~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ..+...+..- ..+.+.-++..+|.++.+.. .-..+...+  ....+..++........+..+-.++.++.|+-.+...
T Consensus        66 ~~~~~~~~~W-p~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   66 ILLLKILLSW-PPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHCCS--CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhC-CCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            3445555544 45567778888888777654 334444432  3455555555443223677888899999999999888


Q ss_pred             HHHHhcccC-cHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcCcchhh--HHhhhcccHHHHHHhhc-C-CChhHHHHH
Q 048793          452 KTRIMETEG-ALNGVIEVLRSGA---TWEAKGNAAATIFSLSGVHAHRK--TLGRKTRVVKGLMDLVK-G-GPTSSKRDA  523 (683)
Q Consensus       452 k~~I~~~~G-~I~~Lv~lL~~~~---~~~~~~~Aa~~L~~Ls~~~~~~~--~i~~~~G~i~~Lv~lL~-~-~~~~~~~~A  523 (683)
                      +..+....+ .+-..+..+....   +...+..++.+++|++..--...  .-.. ...+..+++.+. . .++++.-.+
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHHHH
Confidence            888877634 3333333333321   46788888999999986422111  1011 234566666433 2 467888999


Q ss_pred             HHHHHHhcCCcchhHHHHhc-CchHHH
Q 048793          524 LVAILNLAGDRETVGRLVER-GIVEIV  549 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~a-G~V~~L  549 (683)
                      +.||.+|...+.......+. |+-..+
T Consensus       223 LvAlGtL~~~~~~~~~~~~~l~~~~~~  249 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQLAKSLDVKSVL  249 (268)
T ss_dssp             HHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred             HHHHHHHhccChhHHHHHHHcChHHHH
Confidence            99999999877776666653 444333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=84.58  E-value=22  Score=34.36  Aligned_cols=138  Identities=15%  Similarity=0.120  Sum_probs=84.7

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcH-HHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAI-ALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~I-p~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++.+...|.+. ++.+|..|+..|..|...+. -+    -.|-+ ..++.+|..+    |++++..|...+..++... 
T Consensus        26 ~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~-ik----~k~~l~~~~l~~l~D~----~~~Ir~~A~~~~~e~~~~~-   94 (178)
T PF12717_consen   26 YLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM-IK----VKGQLFSRILKLLVDE----NPEIRSLARSFFSELLKKR-   94 (178)
T ss_pred             HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc-ee----ehhhhhHHHHHHHcCC----CHHHHHHHHHHHHHHHHhc-
Confidence            467788999998 99999999999999987643 11    12433 6777888887    9999999999999987552 


Q ss_pred             hHHHHhcccCcHHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC----CChh
Q 048793          451 NKTRIMETEGALNGVIEVLRSG--------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG----GPTS  518 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~--------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~----~~~~  518 (683)
                      +...+..   .++.++..|.+.        .+.+.+......|...-..++.+..+..      .|..-+..    .++.
T Consensus        95 ~~~~i~~---~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~------kl~~~~~~~~~~~~~~  165 (178)
T PF12717_consen   95 NPNIIYN---NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVE------KLCQRFLNAVVDEDER  165 (178)
T ss_pred             cchHHHH---HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHH------HHHHHHHHHcccccHH
Confidence            1222322   355555555532        2344455555555544443445554443      23332221    2445


Q ss_pred             HHHHHHHHHHH
Q 048793          519 SKRDALVAILN  529 (683)
Q Consensus       519 ~~~~A~~aL~n  529 (683)
                      ..++++.+|..
T Consensus       166 ~~~d~~~~l~~  176 (178)
T PF12717_consen  166 VLRDILYCLSC  176 (178)
T ss_pred             HHHHHHHHHHC
Confidence            55666665543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=84.54  E-value=2.1  Score=43.26  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             hhhHHHHHHHHHhcccCchhHHHHhcccCc-------HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch-hhHHhhhcc
Q 048793          432 PNLQVNAVTTILNLSILEANKTRIMETEGA-------LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH-RKTLGRKTR  503 (683)
Q Consensus       432 ~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~-------I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~-~~~i~~~~G  503 (683)
                      ..-|..|+.+|..|+..+.|-..|... +-       +..|+++|....++-.|+-|..+|.+|+..++. +..++...+
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaT-pp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILAT-PPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeC-CCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            356899999999999999998887766 43       334444554444789999999999999998774 445666589


Q ss_pred             cHHHHHHhhcCCC
Q 048793          504 VVKGLMDLVKGGP  516 (683)
Q Consensus       504 ~i~~Lv~lL~~~~  516 (683)
                      +|..|+..+.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=84.53  E-value=0.37  Score=39.26  Aligned_cols=47  Identities=23%  Similarity=0.545  Sum_probs=22.7

Q ss_pred             cccccccccCCC-C---ceec----CCccccchhhHHHHHhc--C--------CCCCCCCCCccC
Q 048793          276 DFRCPISLELMR-N---PVVV----ATGQTYDRQSISLWIES--G--------HNTCPKTGQTLA  322 (683)
Q Consensus       276 ~f~CPis~~~m~-d---Pv~~----~~g~ty~r~~I~~w~~~--g--------~~~cP~~~~~l~  322 (683)
                      +..|+||.+... +   |+.+    .||++|=..|+.+||..  +        ..+||.|++++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            456999987654 2   5544    57899999999999953  1        135999998764

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=84.17  E-value=0.47  Score=46.91  Aligned_cols=54  Identities=20%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             cccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCC--CCCccCCCCCcch
Q 048793          276 DFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPK--TGQTLAHTNLVTN  329 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~--~~~~l~~~~l~pn  329 (683)
                      +.+||||.+...-|++- .|+|.|+|..|++.++- -...||.  |.+......++..
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d  246 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD  246 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence            46899999999999865 99999999999999873 1345775  4444444444433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=83.49  E-value=53  Score=36.02  Aligned_cols=102  Identities=6%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             HHhcccCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc-CCC---hhHHHHHHHHH
Q 048793          454 RIMETEGALNGVIEVLRSGA--TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-GGP---TSSKRDALVAI  527 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~--~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-~~~---~~~~~~A~~aL  527 (683)
                      .+++....+..|..++++..  ...+-..|+.++..+-..+.....+..++|.++.+++-+. .+-   .++...--.+|
T Consensus       100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l  179 (379)
T PF06025_consen  100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL  179 (379)
T ss_pred             cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            34452145666777777631  2567788999999998888888888777999999999888 543   44556666788


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhcc
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMDV  555 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~  555 (683)
                      ..||.+..+..++.+.+.++.+++++.+
T Consensus       180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  180 SAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             hHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            8899999999999999999999999874

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=83.40  E-value=4.1  Score=39.49  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             hHHHHhcccCcHHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRS--------GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~--------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                      --...++. ||+..|+.+|..        +.+......+..+|..|.....+...+....+++..|+..|.+.+..++..
T Consensus        99 Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~  177 (187)
T PF06371_consen   99 WVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL  177 (187)
T ss_dssp             HHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred             HHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence            34566676 899999999862        123567778999999999998888888888999999999999999999999


Q ss_pred             HHHHHHHhc
Q 048793          523 ALVAILNLA  531 (683)
Q Consensus       523 A~~aL~nLs  531 (683)
                      |+..|..+|
T Consensus       178 ~leiL~~lc  186 (187)
T PF06371_consen  178 ALEILAALC  186 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=83.07  E-value=4.8  Score=46.94  Aligned_cols=137  Identities=20%  Similarity=0.188  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-hHHHHhcccCcHHHHHH
Q 048793          389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-NKTRIMETEGALNGVIE  467 (683)
Q Consensus       389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~~~G~I~~Lv~  467 (683)
                      ..+++.++++|+..+...|..|.+.-+++.+-.++..+    ++..|..++..+.||..++. ....|++....++....
T Consensus       559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee----~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~  634 (748)
T KOG4151|consen  559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEE----NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL  634 (748)
T ss_pred             HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc----cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH
Confidence            46788999999999988888888877777766666666    88999999999999987764 46667764467777777


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          468 VLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       468 lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      .+... .......+++++.-+....+ .+..+-+...+...++.++.+++...+.-.+..+.|+
T Consensus       635 ~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~  697 (748)
T KOG4151|consen  635 NLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL  697 (748)
T ss_pred             HHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence            76664 56667777777775555544 4443555567888999999988888877777666664

>PF04641 Rtf2: Rtf2 RING-finger

Probab=82.87  E-value=1.3  Score=45.89  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             CCcccccccccCCCCceec-CCccccchhhHHHHHhc
Q 048793          274 PADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES  309 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~  309 (683)
                      -.|++|+||++.+.+||+. .-|+-|.+..|-+|+-.
T Consensus        32 ~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~   68 (260)
T PF04641_consen   32 ARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD   68 (260)
T ss_pred             CCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence            4689999999999999865 78999999999999965

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=82.79  E-value=0.79  Score=47.63  Aligned_cols=50  Identities=18%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CcccccccccCC--CCceec--CCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793          275 ADFRCPISLELM--RNPVVV--ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN  325 (683)
Q Consensus       275 ~~f~CPis~~~m--~dPv~~--~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~  325 (683)
                      +++ ||+|.+.|  .|--..  +||...||-|--.--+.-+..||.||..++...
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            455 99999998  344444  678777776643332333679999998877654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=82.66  E-value=40  Score=40.57  Aligned_cols=200  Identities=16%  Similarity=0.104  Sum_probs=107.5

Q ss_pred             HhhhhHHHHHHHhccCC----CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCC----hhhHHHHH
Q 048793          368 ATKMTASFLINKLATSQ----SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRL----PNLQVNAV  439 (683)
Q Consensus       368 ~~~~~i~~Lv~~L~s~~----~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d----~~~qe~A~  439 (683)
                      +..|++..++++|.+..    +.+.....+..|+.+++- ..||..+.+.|+++.|+..|......+.    ..+-+.-+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            35677888888886531    344555566666667765 5699999999999999988752211112    34445444


Q ss_pred             HHHHhcccCchh---HH--HHhcccC----c---HHHHHHHHhcC---CCHHHHHHHHHHHHHhhcCc------------
Q 048793          440 TTILNLSILEAN---KT--RIMETEG----A---LNGVIEVLRSG---ATWEAKGNAAATIFSLSGVH------------  492 (683)
Q Consensus       440 ~aL~nLs~~~~~---k~--~I~~~~G----~---I~~Lv~lL~~~---~~~~~~~~Aa~~L~~Ls~~~------------  492 (683)
                      .++-.|......   ..  ......|    .   +..+++.+.+.   .++......+++|-+|+..+            
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~  272 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK  272 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence            444443221110   00  0001101    2   33333333321   13455555566665555443            


Q ss_pred             -------------------------------------chhhHHhhhcccHHHHHHhhcCCCh----------------hH
Q 048793          493 -------------------------------------AHRKTLGRKTRVVKGLMDLVKGGPT----------------SS  519 (683)
Q Consensus       493 -------------------------------------~~~~~i~~~~G~i~~Lv~lL~~~~~----------------~~  519 (683)
                                                           .-|..|.. .|++...++.|...-+                ..
T Consensus       273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence                                                 23455555 6777777766643211                23


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc--cCch---hHHHHHHHHHH
Q 048793          520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD--VLPE---ESVTILEAVVK  569 (683)
Q Consensus       520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~--~~~~---~~~~aL~~L~~  569 (683)
                      ...++..|..||..+..-+.++..++++.+..+=.  +..+   .++..|..|..
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            45677788888887776666676777744433322  1111   25555555544

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.56  E-value=4.6  Score=36.63  Aligned_cols=72  Identities=17%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh-----cC---CHHHHHHHHHHHHHHHh
Q 048793          583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELME-----SG---TARARRKAAALLRILRR  654 (683)
Q Consensus       583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~-----~~---~~~~k~kA~~lL~~l~~  654 (683)
                      ...|.+-|...++.+|-+|+.+|..+|.+++....+.+.....++..+.+...     .|   +..+|.+|..++..+..
T Consensus        40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence            56777888888999999999999999999877666666666667777776654     23   46899999999998865

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=82.46  E-value=11  Score=38.82  Aligned_cols=96  Identities=7%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHhcc-cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHh
Q 048793          434 LQVNAVTTILNLS-ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDL  511 (683)
Q Consensus       434 ~qe~A~~aL~nLs-~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~l  511 (683)
                      ....|+.+|.-++ .|+..|...... .+++.++.+|....++.++.++..+|..+.. ...|...+-. .+|+..++.+
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~l  184 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHH
Confidence            4566778887777 577788777776 8999999999654367888888888876654 4556665555 8999999999


Q ss_pred             hcCCC--hhHHHHHHHHHHHhc
Q 048793          512 VKGGP--TSSKRDALVAILNLA  531 (683)
Q Consensus       512 L~~~~--~~~~~~A~~aL~nLs  531 (683)
                      +++..  .+.+-.++..|+-..
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHH
Confidence            98764  345555555555443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=82.45  E-value=4.2  Score=33.35  Aligned_cols=59  Identities=19%  Similarity=0.065  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc--hhHHHHHHHHHHcCCcHHHHH
Q 048793          520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP--EESVTILEAVVKRGGLTAIVA  578 (683)
Q Consensus       520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e~~~  578 (683)
                      .|.|++|+.+++..+.+...+-+.++|+.++++....+  .....|..+|..++...++..
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~   64 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAE   64 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHH
Confidence            58899999999999989888888999999999987543  346667777777777776654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=81.96  E-value=19  Score=41.44  Aligned_cols=161  Identities=17%  Similarity=0.092  Sum_probs=99.8

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHH---hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAE---AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA  461 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~---~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~  461 (683)
                      .++.+.-|+..||.+.++...+-..+-.   ...+..++..+. .    ++..+-.++.+|.|+-.+..++..+......
T Consensus       557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~----~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~  631 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A----DPANQLLVVRCLANLFSNPAGRELFMSRLES  631 (745)
T ss_pred             CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c----chhHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            5788899999999999887654433331   235556666665 4    6788889999999999887777766653112


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhhcC-----CChhHHHHHHHHHHHhcCCc
Q 048793          462 LNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLVKG-----GPTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~  534 (683)
                      +-..+--.+++.+...+...+...+|++..  ..+-. +    |..+.|...+..     .+-++.-.++.||.+|+..+
T Consensus       632 i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~----~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~  706 (745)
T KOG0301|consen  632 ILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L----EGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD  706 (745)
T ss_pred             HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c----chHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence            222222233443345555555555666542  22221 2    333333333322     12245667788999999988


Q ss_pred             chhHHHHhcCchHHHHHHhcc
Q 048793          535 ETVGRLVERGIVEIVAEAMDV  555 (683)
Q Consensus       535 ~n~~~iv~aG~V~~Lv~lL~~  555 (683)
                      .+..++...=-|..+++.+.+
T Consensus       707 ~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  707 ASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHHHHhcCHHHHHHHHHH
Confidence            888888776677777777753

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=81.89  E-value=63  Score=32.82  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             HHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch
Q 048793          416 IALLARHLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH  494 (683)
Q Consensus       416 Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~  494 (683)
                      +|.|+.-+...   .+++.+...+.+|-.++.++ .+...      ++..|+.+...+ +.+.+.-+.+.+..+-..++-
T Consensus         2 l~~L~~~l~~~---~~~~~~~~~L~~L~~l~~~~~~~~~~------v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r   71 (234)
T PF12530_consen    2 LPLLLYKLGKI---SDPELQLPLLEALPSLACHKNVCVPP------VLQTLVSLVEQG-SLELRYVALRLLTLLWKANDR   71 (234)
T ss_pred             hHHHHHHhcCC---CChHHHHHHHHHHHHHhccCccchhH------HHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCch
Confidence            45555533332   28899999999999999877 33333      344466666666 456555566666666543321


Q ss_pred             hhHHhhhcccHHHHHHh-----h---cCCC--hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHh-ccCch-hHHH
Q 048793          495 RKTLGRKTRVVKGLMDL-----V---KGGP--TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM-DVLPE-ESVT  562 (683)
Q Consensus       495 ~~~i~~~~G~i~~Lv~l-----L---~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL-~~~~~-~~~~  562 (683)
                      ..      +.+..++..     .   .+++  .+..-..+.++..+|...++    .-...++.+..+| .++.+ ....
T Consensus        72 ~f------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~al  141 (234)
T PF12530_consen   72 HF------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQAL  141 (234)
T ss_pred             HH------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHH
Confidence            11      234434333     1   1111  22334446788888887666    2223577788888 44333 3556


Q ss_pred             HHHHHHHcC
Q 048793          563 ILEAVVKRG  571 (683)
Q Consensus       563 aL~~L~~l~  571 (683)
                      ++..|..++
T Consensus       142 ale~l~~Lc  150 (234)
T PF12530_consen  142 ALEALAPLC  150 (234)
T ss_pred             HHHHHHHHH
Confidence            666666666

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=81.54  E-value=50  Score=37.37  Aligned_cols=151  Identities=21%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCCh----hHHHHHHHHHHHhcCCcchh
Q 048793          462 LNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT----SSKRDALVAILNLAGDRETV  537 (683)
Q Consensus       462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~  537 (683)
                      ...+.+++.+| +...+..|...|.+|+.+......+.. ..++..|..++.+|+.    ......++++..|-.+.-.-
T Consensus        85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            34577788888 688888899999999999888777777 6789999999998864    34556666666654433222


Q ss_pred             HHHHhcCchHHHHHHhcc---CchhHHHHHHHHHHc--CCcH--HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          538 GRLVERGIVEIVAEAMDV---LPEESVTILEAVVKR--GGLT--AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       538 ~~iv~aG~V~~Lv~lL~~---~~~~~~~aL~~L~~l--~~~~--e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      ...+....|...+.+..-   +...-..||.+|-.+  +++.  ..+...--+..|+..++.++.+.+.+|.+.+-++..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            222333333333333321   122356677777553  2321  223333447788888888888888888888888876


Q ss_pred             cCCc
Q 048793          611 KGGS  614 (683)
Q Consensus       611 ~~~~  614 (683)
                      ..++
T Consensus       243 ~a~~  246 (713)
T KOG2999|consen  243 KAPD  246 (713)
T ss_pred             hCCh
Confidence            6554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=81.53  E-value=17  Score=40.87  Aligned_cols=156  Identities=12%  Similarity=0.032  Sum_probs=101.5

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      +..+.+.+.++ +...+..|+..|..++.+.. -...+....++..|..+..++-......+....++++..+-.+.-.-
T Consensus        85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEG-NNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            34577888888 88888889999999988665 45556667778899999988721113355566666666654332211


Q ss_pred             HHHhcccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          453 TRIMETEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      ...+.. .+|..++.+.+- ..+..+...|...|-++...+......+...--+..|+..|...+.+....|...|-.|-
T Consensus       163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            222222 344444444431 113556678889999988877744444444788999999999888777766665555553

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.29  E-value=35  Score=39.98  Aligned_cols=130  Identities=14%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNG  464 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~  464 (683)
                      +...|.--+..|+..+..++.-+     ...|..+..+|.++    ++.+.-.|+.+|.+|+.++..-+.-      ...
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~st----ssaV~fEaa~tlv~lS~~p~alk~A------a~~  283 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSST----SSAVIFEAAGTLVTLSNDPTALKAA------AST  283 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcC----CchhhhhhcceEEEccCCHHHHHHH------HHH
Confidence            46667777777887777655332     34678899999988    7777777888888887665433222      223


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793          465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  534 (683)
                      ++.++-...+-.++-...--|..+.   .+...|.  .|.+--.+++|...+-++++.++.....|+.+.
T Consensus       284 ~i~l~~kesdnnvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr  348 (948)
T KOG1058|consen  284 YIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR  348 (948)
T ss_pred             HHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence            4444432222333332222233332   3333333  255666666677666677777777776665543

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=81.22  E-value=0.4  Score=56.05  Aligned_cols=46  Identities=15%  Similarity=0.356  Sum_probs=38.8

Q ss_pred             ccccccccCCCCceecCCccccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793          277 FRCPISLELMRNPVVVATGQTYDRQSISLWIES-GHNTCPKTGQTLAH  323 (683)
Q Consensus       277 f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~  323 (683)
                      +.|++|.+ ..+++++.|||.+|+.|+.+-++. +...||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            89999999 899999999999999999998864 33479999865543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=80.47  E-value=17  Score=34.44  Aligned_cols=145  Identities=17%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             HHHHHhcc-CCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc-cCchhH
Q 048793          375 FLINKLAT-SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS-ILEANK  452 (683)
Q Consensus       375 ~Lv~~L~s-~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs-~~~~~k  452 (683)
                      .++..|.. ...++.+..|+-.+..+-   +..+....+. .-..+-.++..+    +.+....++.++..|- ...+..
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~----~~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEG----EMDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCH----HCCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccc----cchhHHHHHHHHHHHhCCCHHHH
Confidence            34444443 224556666665555552   2233333221 223334445544    4445566777776654 345666


Q ss_pred             HHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hh-HHHHHHHHHHH
Q 048793          453 TRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TS-SKRDALVAILN  529 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~-~~~~A~~aL~n  529 (683)
                      ..|...+|.++.++.+.. .+.+......++.+|..=|.+...|..|..  .+++.|-++++.+. +. .+..|+..|..
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            777766699999999998 232566666666666655555556666654  67999999996544 44 56667666653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	683
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		3e-22
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-04
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-04
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		2e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 54/72 (75%)
Query: 274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALK 333
           P  FRCPISLELM++PV+V+TGQTY+R SI  W+++GH TCPK+ +TL H  L  N  LK
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 334 NLIALWCREQRI 345
           +LIALWC    I
Sbjct: 66  SLIALWCESNGI 77

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 263 RRKKSASDANVPADFRC-PISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321
           +RKK     ++P D+ C  IS ELMR P +  +G TYDR+ I   ++   +  P T   L
Sbjct: 199 KRKKR----DIP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253
Query: 322 AHTNLVTNTALKNLIALWCREQRIPFDY 349
               L+ N A+K +I  +  E     DY
Sbjct: 254 TQEQLIPNLAMKEVIDAFISENGWVEDY 281

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 272 NVPADFRC-PISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNT 330
           ++P D+ C  IS ELMR P +  +G TYDR+ I   ++   +  P T   L    L+ N 
Sbjct: 1   DIP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 59
Query: 331 ALKNLIALWCREQRIPFDY 349
           A+K +I  +  E     DY
Sbjct: 60  AMKEVIDAFISENGWVEDY 78

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 263 RRKKSASDANVPADFRC-PISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321
           +RKK      +P D+ C  IS ELMR P +  +G TYDR+ I   ++   +  P T   L
Sbjct: 97  KRKKR----EIP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151
Query: 322 AHTNLVTNTALKNLIALWCREQRIPFDY 349
               L+ N A+K +I  + +E     DY
Sbjct: 152 TQDQLIPNLAMKEVIDAFIQENGWVEDY 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	683
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	4e-37
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	5e-37
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-29
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-29
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	1e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-16
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-21
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-05
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-21
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-21
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-18
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-07
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	6e-20
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-19
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-14
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	8e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-17
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	4e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-14
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-14
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	2e-12
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	8e-06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	3e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  131 bits (333), Expect = 4e-37
 Identities = 43/75 (57%), Positives = 54/75 (72%)

Query: 271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNT 330
              P  FRCPISLELM++PV+V+TGQTY+R SI  W+++GH TCPK+ +TL H  L  N 
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62

Query: 331 ALKNLIALWCREQRI 345
            LK+LIALWC    I
Sbjct: 63  VLKSLIALWCESNGI 77

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  135 bits (341), Expect = 5e-37
 Identities = 33/181 (18%), Positives = 65/181 (35%), Gaps = 9/181 (4%)

Query: 171 SKDDKLRLQVLTTLDQIKKEIVPDHS--ILKQMFESLGLRNSSACKEEIESLEEEIQNQT 228
           ++       + + L   KK+         + Q  E     +     E+   L++ ++   
Sbjct: 6   TQRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSD 65

Query: 229 DQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRN 288
           D ++    + +               +   +   +  +      +P      IS ELMR 
Sbjct: 66  DSQNGGDISKMKSKHD-------KYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMRE 118

Query: 289 PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD 348
           P +  +G TYDR+ I   ++   +  P T   L    L+ N A+K +I  + +E     D
Sbjct: 119 PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVED 178

Query: 349 Y 349
           Y
Sbjct: 179 Y 179

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  111 bits (279), Expect = 1e-29
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 268 ASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV 327
              ++ P +FR P+   LM +PV + +G   DR  I   + +   T P   Q L  + L 
Sbjct: 6   IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLE 64

Query: 328 TNTALKNLIALWCREQR 344
               LK  I  W RE++
Sbjct: 65  PVPELKEQIQAWMREKQ 81

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  111 bits (280), Expect = 1e-29
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 251 FGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG 310
           F   V++  ++   +     ++ P +FR P+   LM +PV + +G   DR  I   + + 
Sbjct: 5   FAEKVEEIVAK-NARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN- 62

Query: 311 HNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344
             T P   QTL  + L     LK  I  W RE++
Sbjct: 63  SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  103 bits (258), Expect = 1e-26
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 252 GASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQ-TYDRQSISLWIESG 310
           G+S       L++++  + A+   +F  PI   LM +PVV+ + + T DR +I+  + S 
Sbjct: 1   GSSGSSG---LQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD 57

Query: 311 HNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR 344
             T P     L    +  NT LK  I  W  E++
Sbjct: 58  Q-TDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  104 bits (261), Expect = 3e-25
 Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 45/275 (16%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           +   S  M+    A  +   +    ++    + +AGA+  L + L          +   A
Sbjct: 19  QQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN----EQILQEA 74

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTL 498
           +  + N++     + + +   GAL  ++++L S    +    A   + +++     +   
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQA 133

Query: 499 GRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAMDVLP 557
                 +  L+ L+        ++AL A+ N+A G  E +  +++ G             
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA------------ 181

Query: 558 EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMV 617
                                    +  L  LL   ++   + A   L  I   GG+E  
Sbjct: 182 -------------------------LPALVQLLSSPNEQILQEALWALSNIA-SGGNEQK 215

Query: 618 ADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
             +     +E++  +L      + +++A   L  L
Sbjct: 216 QAVKEAGALEKLE-QLQSHENEKIQKEAQEALEKL 249

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (272), Expect = 6e-25
 Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 15/283 (5%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
           ++  +  +  +E A      L +LS    +    I ++G I  L + LG    S + ++ 
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLG----SPVDSVL 115

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
             A+TT+ NL + +      +   G L  ++ +L      +        +  L+  +   
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQES 174

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL-NLAGDRETVGRLVERGIVEIVAEAMD 554
           K +   +   + L+++++             +L  L+        +VE G ++ +   + 
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234

Query: 555 VLPEESVTILEAVVKRGGLTA----IVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610
              +  V     +     L+            +  L  LL          AA  L  +  
Sbjct: 235 DPSQRLVQ--NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT- 291

Query: 611 KGGSEMVADIAAVPGIERVIWEL-MESGTARARRKAAALLRIL 652
               +    +  V GIE ++  +            A   LR L
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 99.6 bits (248), Expect = 5e-22
 Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 16/280 (5%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           KL   +     N A   +  LSK ++   A +     ++ + R +     +         
Sbjct: 21  KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCT 77

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTL 498
             T+ NLS        I +  G +  ++++L S         A  T+ +L       K  
Sbjct: 78  AGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMA 135

Query: 499 GRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAMD--- 554
            R    ++ ++ L+              +  LA G++E+   ++  G  + +   M    
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195

Query: 555 --VLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKG 612
              L   +  +L+ +         +     ++ L + L + S    ++   TL  +    
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DA 254

Query: 613 GSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
            ++       +      + +L+ S        AA +L  L
Sbjct: 255 ATKQEGMEGLLG----TLVQLLGSDDINVVTCAAGILSNL 290

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 39/252 (15%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 410 IAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVL 469
                AI  L + L  +       +   A   +  LS  EA++  IM +   ++ ++  +
Sbjct: 10  ELATRAIPELTKLLNDED----QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 470 RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529
           ++    E     A T+ +LS        +  K+  +  L+ ++     S    A+  + N
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAI-FKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 530 LAGDRETVGRLV-ERGIVEIVAEAMDVLPEESVTILEAVVK--------RGGLTAIVAAY 580
           L   +E     V   G ++ +   + +L + +V  L                   I+ A 
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKM---VALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181

Query: 581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR 640
              + L  ++R  +        + ++ +     S     I    G++ +    +   + R
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALG-LHLTDPSQR 239

Query: 641 ARRKAAALLRIL 652
             +     LR L
Sbjct: 240 LVQNCLWTLRNL 251

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 81.9 bits (202), Expect = 2e-16
 Identities = 41/319 (12%), Positives = 97/319 (30%), Gaps = 39/319 (12%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           +L  S  +     A   L +L+  +  ++  + + G I  L R +         ++   A
Sbjct: 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPA 327

Query: 439 VTTILNLSI----LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494
           +  + +L+      E  +  +      L  V+++L   + W         I +L+   A+
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386

Query: 495 RKTLGRKTRVVKGLMDLVKGGPTSSKRDALV----------------------AILNLAG 532
              L  +   +  L+ L+      ++R   +                      A+  LA 
Sbjct: 387 HAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 445

Query: 533 DRETVGRLVERG----IVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCI 588
           D      +         V+++   ++ +   +  +L  + +       + A      L  
Sbjct: 446 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 505

Query: 589 LLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAAL 648
           LL   ++     AAA L  +      +    ++       +   L  +        A   
Sbjct: 506 LLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-----ELTSSLFRTEPMAWNETADLG 560

Query: 649 LRILRRWAAGLDARSSSTT 667
           L I  +       +   + 
Sbjct: 561 LDIGAQGEPLGYRQDDPSY 579

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 98.4 bits (245), Expect = 2e-22
 Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 28/298 (9%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL-------GPDTASRL 431
               +        AV  L  LS  D + R  + E G +  +A  L       G       
Sbjct: 39  NPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 97

Query: 432 PNLQVNAVTTILNLSILEA-NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS- 489
             L+  A   + NL+  +  NK  +   +G +  ++  L+S +  + +   A+ + +LS 
Sbjct: 98  ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSW 156

Query: 490 GVHAHRKTLGRKTRVVKGLMDLVKGGPTSS-KRDALVAILNLAGD-RETVGRLV-ERGIV 546
               + K   R+   VK LM+        S  +  L A+ NL+    E    +    G +
Sbjct: 157 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 216

Query: 547 EIVAEAM-DVLPEESVTILEAVV-----------KRGGLTAIVAAYNTIKKLCILLREGS 594
             +   +       ++ I+E+                    I+   N ++ L   L+  S
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276

Query: 595 DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
            T   +A  TL  +     +    +     G   ++  L+ S        +AA LR L
Sbjct: 277 LTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 44/272 (16%), Positives = 95/272 (34%), Gaps = 48/272 (17%)

Query: 362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLS-KTDSDSRACIAEAGAIALLA 420
           NKA L + K     L+ +L  S+S +        LR+LS + D +S+  + E G++  L 
Sbjct: 118 NKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGA---TWE 476
                    +  +   + ++ + NLS     NK  I   +GAL  ++  L   +   T  
Sbjct: 177 ECA---LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233

Query: 477 AKGNAAATIFSLSGV---HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533
              +    + ++S +   +   + + R+   ++ L+  +K    +   +A   + NL+  
Sbjct: 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293

Query: 534 RETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREG 593
                                  P++   + +     G ++ +            L+   
Sbjct: 294 ----------------------NPKDQEALWDM----GAVSMLKN----------LIHSK 317

Query: 594 SDTSRESAAATLVTICRKGGSEMVADIAAVPG 625
                  +AA L  +     ++        PG
Sbjct: 318 HKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 32/231 (13%), Positives = 78/231 (33%), Gaps = 41/231 (17%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           +   S   +    A+ +L  ++   ++    + +AGA+  L + L     S    +   A
Sbjct: 19  QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEA 74

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTL 498
           +  + N++     + + +   GAL  ++++L S    +    A   + +++     +   
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQA 133

Query: 499 GRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPE 558
                 +  L+ L+        ++AL A+ N+A       +                   
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ------------------- 174

Query: 559 ESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609
                  AV + G           ++KL  L    ++  ++ A   L  + 
Sbjct: 175 -------AVKEAGA----------LEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 41/207 (19%)

Query: 448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKG 507
           +  +          L  +++ L S    +   +A   +  ++     +         +  
Sbjct: 1   MRGSHHHHHH-GSELPQMVQQLNSPDQ-QELQSALRKLSQIASGGNEQIQAVIDAGALPA 58

Query: 508 LMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAV 567
           L+ L+        ++AL A+ N+A              ++ V +A               
Sbjct: 59  LVQLLSSPNEQILQEALWALSNIASGGN--------EQIQAVIDA--------------- 95

Query: 568 VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIE 627
              G L A+V           LL   ++   + A   L  I   GG+E +  +     + 
Sbjct: 96  ---GALPALVQ----------LLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALP 141

Query: 628 RVIWELMESGTARARRKAA-ALLRILR 653
            ++ +L+ S   +  ++A  AL  I  
Sbjct: 142 ALV-QLLSSPNEQILQEALWALSNIAS 167

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 96.2 bits (239), Expect = 4e-21
 Identities = 69/356 (19%), Positives = 120/356 (33%), Gaps = 42/356 (11%)

Query: 329 NTALKNLI------ALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLAT 382
           + AL N+I          RE R+                 + A E         +     
Sbjct: 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP---- 158

Query: 383 SQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL-------GPDTASRLPNLQ 435
           +        AV  L  LS  D + R  + E G +  +A  L       G         L+
Sbjct: 159 APVEHQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 436 VNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS-GVHA 493
             A   + NL+    ANK  +   +G +  ++  L+S +  + +   A+ + +LS     
Sbjct: 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADV 276

Query: 494 HRKTLGRKTRVVKGLMDLVKGGPTSS-KRDALVAILNLAGD-RETVGRLV-ERGIVEIVA 550
           + K   R+   VK LM+        S  +  L A+ NL+    E    +    G +  + 
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336

Query: 551 EAM-DVLPEESVTILEAVV-----------KRGGLTAIVAAYNTIKKLCILLREGSDTSR 598
             +       ++ I+E+                    I+   N ++ L   L+  S T  
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 396

Query: 599 ESAAATLVTICR--KGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
            +A  TL  +        E + D+ AV     ++  L+ S        +AA LR L
Sbjct: 397 SNACGTLWNLSARNPKDQEALWDMGAVS----MLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 72.7 bits (178), Expect = 1e-13
 Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 48/256 (18%)

Query: 362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLS-KTDSDSRACIAEAGAIALLA 420
           NKA L + K     L+     S+S +        LR+LS + D +S+  + E G++  L 
Sbjct: 234 NKATLCSMKGCMRALV-AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292

Query: 421 RHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGA---TWE 476
                    +  +   + ++ + NLS     NK  I   +GAL  ++  L   +   T  
Sbjct: 293 ECALE---VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349

Query: 477 AKGNAAATIFSLSG---VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD 533
              +    + ++S     +   + + R+   ++ L+  +K    +   +A   + NL+  
Sbjct: 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409

Query: 534 RETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREG 593
                                     +    EA+   G ++ +            L+   
Sbjct: 410 --------------------------NPKDQEALWDMGAVSMLKN----------LIHSK 433

Query: 594 SDTSRESAAATLVTIC 609
                  +AA L  + 
Sbjct: 434 HKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 55/325 (16%), Positives = 109/325 (33%), Gaps = 52/325 (16%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALL---------------A 420
            +    +  S EA   A   L ++  +  D +    E   + LL               A
Sbjct: 86  SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145

Query: 421 RHLGPDT-----ASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATW 475
              G D       + + +    AV  ++ LS  E ++  + E  G L  + E+L+     
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDCEM 204

Query: 476 EAKG----------NAAATIFSLS-GVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL 524
                          A   + +L+ G  A++ TL      ++ L+  +K      ++   
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264

Query: 525 VAILNLA--GDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVK---------RGGL 573
             + NL+   D  +   L E G V+ + E    + +ES   L++V+              
Sbjct: 265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST--LKSVLSALWNLSAHCTENK 322

Query: 574 TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVAD------IAAVPGIE 627
             I A    +  L   L   S T+  +   +   I R   S +  +      +     ++
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382

Query: 628 RVIWELMESGTARARRKAAALLRIL 652
            ++ + ++S +      A   L  L
Sbjct: 383 TLL-QHLKSHSLTIVSNACGTLWNL 406

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 45/302 (14%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL--------GPDT 427
           ++  L +       +D    L ++S +  DS   + ++G + LL + L            
Sbjct: 33  MVYSLLSMLGTHDKDDMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGN 91

Query: 428 ASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS 487
           +      +  A   + N+   + +  R       L+ ++E +R+                
Sbjct: 92  SRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH-LLEQIRAY--------------- 135

Query: 488 LSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVE 547
                   +        +    + +          A+  ++ L+ D E    + E G ++
Sbjct: 136 ---CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQ 192

Query: 548 IVAEAMDVLPEESVTILE---AVVKRGGLTA--------------IVAAYNTIKKLCILL 590
            +AE + V  E      +     ++R    A              + +    ++ L   L
Sbjct: 193 AIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252

Query: 591 REGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLR 650
           +  S+  ++  A+ L  +  +        +  V  ++ ++   +E       +   + L 
Sbjct: 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 312

Query: 651 IL 652
            L
Sbjct: 313 NL 314

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSK---TDSDSRACIAEAGAIALLARHLGPDTASRLP 432
            +   + + ++         LR++S    T+ D R  + E   +  L +HL   +     
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS----L 393

Query: 433 NLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH 492
            +  NA  T+ NLS         +   GA++ +  ++ S         +AA + +L    
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452

Query: 493 AHRK 496
             + 
Sbjct: 453 PAKY 456

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 96.4 bits (240), Expect = 4e-21
 Identities = 42/280 (15%), Positives = 95/280 (33%), Gaps = 16/280 (5%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           KL   +     N A   +  LSK ++   A +     ++ + R +     +         
Sbjct: 24  KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN---TNDVETARCT 80

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTL 498
             T+ NLS        I +  G +  ++++L S         A  T+ +L       K  
Sbjct: 81  AGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVD-SVLFYAITTLHNLLLHQEGAKMA 138

Query: 499 GRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAM---- 553
            R    ++ ++ L+              +  LA G++E+   ++  G  + +   M    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 554 -DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKG 612
            + L   +  +L+ +         +     ++ L + L + S    ++   TL  +    
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 613 GSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
             +   +      +  ++ +L+ S        AA +L  L
Sbjct: 259 TKQEGME----GLLGTLV-QLLGSDDINVVTCAAGILSNL 293

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 50/305 (16%), Positives = 93/305 (30%), Gaps = 41/305 (13%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
              T  S     + ++ LR+LS     +       G +  L + LG D      N+   A
Sbjct: 234 LHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDD----INVVTCA 286

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSG-ATWEAKGNAAATIFSLSGVHAHR-- 495
              + NL+        ++   G +  ++  +       +    A   +  L+  H     
Sbjct: 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346

Query: 496 -KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL-NLAGDRETVGRLVERGIVEIVAE-- 551
            +   R    +  ++ L+          A V ++ NLA        L E+G +  + +  
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 552 ------------------------AMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLC 587
                                    M+ + E     L  + +      ++   NTI    
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 466

Query: 588 ILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAA 647
            LL    +  +  AA  L  +      E    I A       + EL+ S        AAA
Sbjct: 467 QLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATA-PLTELLHSRNEGVATYAAA 523

Query: 648 LLRIL 652
           +L  +
Sbjct: 524 VLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 39/252 (15%), Positives = 86/252 (34%), Gaps = 19/252 (7%)

Query: 410 IAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVL 469
                AI  L + L  +       +   A   +  LS  EA++  IM +   ++ ++  +
Sbjct: 13  ELATRAIPELTKLLNDED----QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 470 RSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN 529
           ++    E     A T+ +LS        +  K+  +  L+ ++     S    A+  + N
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAI-FKSGGIPALVKMLGSPVDSVLFYAITTLHN 127

Query: 530 LAGDRETVGRLV-ERGIVEIVAEAMDVLPEESVTILEAVVK--------RGGLTAIVAAY 580
           L   +E     V   G ++ +   + +L + +V  L                   I+ A 
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKM---VALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184

Query: 581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR 640
              + L  ++R  +        + ++ +     S     I    G++ +    +   + R
Sbjct: 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALG-LHLTDPSQR 242

Query: 641 ARRKAAALLRIL 652
             +     LR L
Sbjct: 243 LVQNCLWTLRNL 254

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 29/210 (13%)

Query: 362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDS---RACIAEAGAIAL 418
           NK  +       + +   L      +    A+  LR L+    ++   +  +     + +
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 419 LARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG------ 472
           + + L P +   L       V  I NL++  AN   + E +GA+  ++++L         
Sbjct: 360 VVKLLHPPSHWPL---IKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLLVRAHQDTQR 415

Query: 473 ---------------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPT 517
                             E        +  L+    +R  + R    +   + L+     
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI-RGLNTIPLFVQLLYSPIE 474

Query: 518 SSKRDALVAILNLAGDRETVGRLVERGIVE 547
           + +R A   +  LA D+E    +   G   
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATA 504

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 94.1 bits (233), Expect = 6e-20
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 261 RLRRKKSASDANVPADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCPKTGQ 319
           +   ++     +VP +F  P+   +M++PV++       DR +I   + S  +T P    
Sbjct: 876 KADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRM 934

Query: 320 TLAHTNLVTNTALKNLIALWCREQR 344
            L   ++  N  L+  I  + ++++
Sbjct: 935 PLKLEDVTPNEELRQKILCFKKQKK 959

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 40/281 (14%), Positives = 106/281 (37%), Gaps = 12/281 (4%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
            +  L   ++     ++ + L +++  +S     + +AGA+ +    L     S   ++Q
Sbjct: 69  FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS----SEFEDVQ 124

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
             AV  + N++         +     L  ++++           NA   + +L    +  
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAMD 554
               + +  +  L  L+    T    DA  A+  L+ G  + +  +++ G+   + E + 
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244

Query: 555 ----VLPEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC 609
                +   ++  +  +V      T ++   + ++ L  LL    ++ ++ A  T+  I 
Sbjct: 245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304

Query: 610 RKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLR 650
             G    +  +        +I  ++++   R R++AA  + 
Sbjct: 305 -AGNRAQIQTVIDANIFPALI-SILQTAEFRTRKEAAWAIT 343

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 46/290 (15%), Positives = 96/290 (33%), Gaps = 21/290 (7%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
           L+   +    +    +AV+ L +L +  S        +  + +L+  L         ++ 
Sbjct: 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD----TDVL 209

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
            +A   +  LS    +K + +   G    ++E+L      +    A   + ++      +
Sbjct: 210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQ 268

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL-AGDRETVGRLVERGIVEIVAEAM- 553
             +      ++ L+ L+     S K++A   I N+ AG+R  +  +++  I   +   + 
Sbjct: 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328

Query: 554 ---DVLPEESVTILEAVVKRGG--LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI 608
                  +E+   +      G       +     IK LC LL        + A   L  I
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

Query: 609 CRKGGSEMVADIAAVP---------GIERVIWELMESGTARARRKAAALL 649
            R G  E   +   +               I  L         +KA  L+
Sbjct: 389 LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 33/260 (12%), Positives = 85/260 (32%), Gaps = 19/260 (7%)

Query: 402 TDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT--RIMETE 459
              ++          + +   +     S+ P  Q++A      L   E N     ++ T 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMI----FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 460 GALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSS 519
           G +   +E L+       +  +A  + +++  ++ +  +  +   V   ++L+       
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 520 KRDALVAILNLAGDRET-VGRLVERGIVEIVAEAMDVLPEESVTILEAVVK--------R 570
           +  A+ A+ N+AGD       +++  I+  + +      +  +T+    V         +
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVWALSNLCRGK 181

Query: 571 GGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVI 630
                       +  L  LL          A   L  +   G ++ +  +       R++
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLV 240

Query: 631 WELMESGTARARRKAAALLR 650
            EL+     +    A   + 
Sbjct: 241 -ELLMHNDYKVVSPALRAVG 259

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 91.2 bits (226), Expect = 3e-19
 Identities = 37/283 (13%), Positives = 89/283 (31%), Gaps = 16/283 (5%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
            +  S        A+  L +L      ++  +  AG +  +   L               
Sbjct: 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN----VKFLAIT 296

Query: 439 VTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTL 498
              +  L+        I+   G    ++ ++R+    +     +  +  LS   +++  +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 499 GRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAM----D 554
             +   ++ L   +        ++ L  + NL+       +    G++  + + +     
Sbjct: 357 -VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDI 413

Query: 555 VLPEESVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTS--RESAAATLVTIC-R 610
            +   +  IL  +         +V     I+ L   +    D     E A   L  +  R
Sbjct: 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473

Query: 611 KGGSEMVADIAAVPGIERVIWELMESGTARARRKAA-ALLRIL 652
              +EM  +   +     V+ +L+   +     KA   L+R L
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 83.5 bits (206), Expect = 9e-17
 Identities = 52/399 (13%), Positives = 120/399 (30%), Gaps = 48/399 (12%)

Query: 280 PISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW 339
            ++++  R   V    Q     S    I SG  T   +     +     +     ++  W
Sbjct: 11  EMAMDPDRKAAVSHWQQQSYLDS---GIHSGATTTAPSLSGKGNPED--DDVDNQVLYEW 65

Query: 340 CREQRIPFDYAASSEKVNGVVTNKAALEATKMTA---------SFLINKLATSQSMEAAN 390
            +     F+    ++        +A      M                  A   +++   
Sbjct: 66  EQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLA 125

Query: 391 DAVYELRSL-SKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE 449
           +    L+       +          AI  L + L  +       +   A   +  LS  E
Sbjct: 126 EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED----QVVVNKAAVMVHQLSKKE 181

Query: 450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLM 509
           A++  IM +   ++ ++  +++    E     + T+ +LS        +  K+  +  L+
Sbjct: 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAI-FKSGGIPALV 240

Query: 510 DLVKGGPTSSKRDALVAILNLAGDRETVGRLV-ERGIV---------------EIVAEAM 553
           +++     S    A+  + NL   +E     V   G +                I  + +
Sbjct: 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300

Query: 554 DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGG 613
            +L   +      ++  GG  A+V           ++R  +        + ++ +     
Sbjct: 301 QILAYGNQESKLIILASGGPQALVN----------IMRTYTYEKLLWTTSRVLKVL-SVC 349

Query: 614 SEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
           S     I    G++ +    +   + R  +     LR L
Sbjct: 350 SSNKPAIVEAGGMQALG-LHLTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 77.0 bits (189), Expect = 1e-14
 Identities = 56/316 (17%), Positives = 105/316 (33%), Gaps = 39/316 (12%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
           L+N + T    +        L+ LS   S ++  I EAG +  L  HL          L 
Sbjct: 323 LVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLT----DPSQRLV 377

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
            N + T+ NLS      T+    EG L  ++++L S         AA  + +L+  +   
Sbjct: 378 QNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKN 433

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSS--KRDALVAILNLAGDRETVGR----LVERGIVEIV 549
           K +  +   ++ L+  V            A+ A+ +L    +        +     + +V
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493

Query: 550 AEAM-----DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAAT 604
            + +       L + +V ++  +       A +     I +L  LL      ++   +  
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 605 LVTICRKGGSEMVADIAAVPGI----------------ERVIW---ELMESGTARARRKA 645
                   G  M   + A  G                    I    +L+ S     +R A
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613

Query: 646 AALLRILRRWAAGLDA 661
           A +L  L +     +A
Sbjct: 614 AGVLCELAQDKEAAEA 629

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 76.2 bits (187), Expect = 2e-14
 Identities = 36/273 (13%), Positives = 87/273 (31%), Gaps = 32/273 (11%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
           +L  S  +     A   L +L+  +  ++  + + G I  L R +         ++   A
Sbjct: 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR--EDITEPA 463

Query: 439 VTTILNLSILEANK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
           +  + +L+    +       +     L  V+++L   + W         I +L+   A+ 
Sbjct: 464 ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALV----------------------AILNLAGD 533
             L R+   +  L+ L+      ++R   +                      A+  LA D
Sbjct: 524 APL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582

Query: 534 RETVGRLVERGIVEIVAEAM----DVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCIL 589
                 +     + +  + +    + +   +  +L  + +       + A      L  L
Sbjct: 583 IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642

Query: 590 LREGSDTSRESAAATLVTICRKGGSEMVADIAA 622
           L   ++     AAA L  +      +    ++ 
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV 675

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 80.8 bits (199), Expect = 8e-19
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 274 PADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHN-----TCPKTG---QTLAHT 324
            + F CPI+ E M+ PV     G TY+  +I   IES         CP+ G     +  +
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 325 NLVTNTALKNLIALWCREQRIPFDYAASS 353
           +L+ + AL+  I    +++    +   SS
Sbjct: 65  DLIQDEALRRAIENHNKKRHRHSESGPSS 93

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 81.9 bits (202), Expect = 2e-17
 Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 44/261 (16%)

Query: 92  YIVLQRMKTLIEDCY-------NGSKMWLLM-QIETAANNFHELTIDLSTLLDIMPLQEL 143
           Y+ +Q+ +  + DC           K    + Q +    ++ E   +L     +   Q L
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 144 RLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFE 203
               D+   + + KK+     +   +  + +                    HS L ++  
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESEL-------------------HSYLTRLIA 148

Query: 204 SLGLRNSSACKEEIESLEEEIQNQTDQKSKH--FAAALIGLVRYTKCVLFGASVQKSDSR 261
           +   R    C+   E  E++   +  Q          +  +      V            
Sbjct: 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV------------ 196

Query: 262 LRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTL 321
               +     ++P      IS ELMR P +  +G TYDR+ I   ++   +  P T   L
Sbjct: 197 ---DEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253

Query: 322 AHTNLVTNTALKNLIALWCRE 342
               L+ N A+K +I  +  E
Sbjct: 254 TQEQLIPNLAMKEVIDAFISE 274

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 26/247 (10%), Positives = 68/247 (27%), Gaps = 24/247 (9%)

Query: 116 QIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDK 175
             +       E    ++ L+D      + + + V D+    K          L   + + 
Sbjct: 33  IYQQCYKQIDET---INQLVDSTSPSTIGIEEQVADITSTYKL---------LSTYESES 80

Query: 176 LRLQVLTTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHF 235
                     +   +   D        +          +     L E   N    +    
Sbjct: 81  NSFDEHIKDLKKNFKQSSDAC---PQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATM 137

Query: 236 AAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASD----ANVPADFRCPISLELMRNPVV 291
                  ++  K + +  +         +  +  D         +  CPI+ +    P++
Sbjct: 138 VNN-TDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLI 196

Query: 292 VAT-GQTYDRQSISLWIE-SGHNTCPKTG--QTLAHTNLVTNTALKNLIALWCREQRIPF 347
                  +DR  I  +++      CP+    Q ++  + V +  ++    +   ++    
Sbjct: 197 SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQ 256

Query: 348 DYAASSE 354
           D  +S  
Sbjct: 257 DKRSSQA 263

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 73.5 bits (180), Expect = 7e-14
 Identities = 45/282 (15%), Positives = 104/282 (36%), Gaps = 15/282 (5%)

Query: 379 KLATSQSMEAANDAVYELRS-LSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVN 437
           +   S  M+    A  + R  LS+        + +AG +  L   +  +       LQ+ 
Sbjct: 94  QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP---EMLQLE 150

Query: 438 AVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKT 497
           A   + N++   + +T+++    A+   I++L +G+  E K  A   + +++G     + 
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGNVAGDSTDYRD 209

Query: 498 LGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAM--- 553
              +   ++ ++ L      S  R A   + NL  G +      V    +  +A+ +   
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269

Query: 554 --DVLPEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR 610
             + L  ++   +  +          V      K+L  LL   S   +  A   +  I  
Sbjct: 270 DTETL-VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328

Query: 611 KGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL 652
             G+++   +    G+   +  L+ S     +++A   +  +
Sbjct: 329 --GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 48/285 (16%), Positives = 96/285 (33%), Gaps = 49/285 (17%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
            + KL  S   E   DA + +  LS    ++   + +      L   L          +Q
Sbjct: 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS----HESTLVQ 316

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
             A+  + N+      +T+++   G L  +  +L S      K  A  TI +++  +  +
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKKEACWTISNITAGNTEQ 375

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV 555
                   ++  L+ L++     +K++A  AI N +                        
Sbjct: 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG---------------------- 413

Query: 556 LPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSE 615
              +   I+  +V +G           IK LC LL    +   E     L  I + G ++
Sbjct: 414 -GLQRPDIIRYLVSQGC----------IKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462

Query: 616 MVADIAAVP----------GIERVIWELMESGTARARRKAAALLR 650
             A    +           G+E+ I+   ++   +   KA  ++ 
Sbjct: 463 KEARGLNINENADFIEKAGGMEK-IFNCQQNENDKIYEKAYKIIE 506

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 73.1 bits (179), Expect = 9e-14
 Identities = 42/285 (14%), Positives = 102/285 (35%), Gaps = 16/285 (5%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
            ++ L  +       ++ + L +++   S+    + + GAI      L    AS   ++ 
Sbjct: 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL----ASPHAHIS 160

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG----ATWEAKGNAAATIFSLSGV 491
             AV  + N++   +    ++   GA++ ++ +L              N   T+ +L   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVA 550
                 L    +++  L+ L+         D+  AI  L  G  E +  +V++G+V  + 
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

Query: 551 EAMD----VLPEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILLREGSDTSRESAAATL 605
           + +      +   ++  +  +V      T  V     +     LL       ++ A  T+
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340

Query: 606 VTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLR 650
             I    G +         G+   +  ++     + +++AA  + 
Sbjct: 341 SNIT--AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 40/243 (16%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQ 435
            + +L      E   D+ + +  L+   ++    + + G +  L + LG         + 
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE----LPIV 291

Query: 436 VNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR 495
             A+  I N+      +T+ +   GAL     +L +  T   +  A  T+ +++     +
Sbjct: 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT-NIQKEATWTMSNITAGRQDQ 350

Query: 496 KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA--GDRETVGRLVERGIVEIVAEAM 553
                   +V  L+ ++      ++++A  AI N    G  E +  LV  GI+E +   +
Sbjct: 351 IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410

Query: 554 DVLPEESVT--------ILEAVVKRGG---LTAIVAAYNTIKKLCILLREGSDTSRESAA 602
                + +         I +A  K G    L+ ++     + K+  L R  +++  +++ 
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470

Query: 603 ATL 605
             +
Sbjct: 471 NLI 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 72.7 bits (177), Expect = 2e-13
 Identities = 41/332 (12%), Positives = 96/332 (28%), Gaps = 62/332 (18%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNA 438
            +   +     ++A   L+ L   +   +  + +   I +L   L          + + A
Sbjct: 55  AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL----DHPKKEVHLGA 110

Query: 439 VTTILNLSILEANKTRIMETE-GALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKT 497
              + N+S       +I       +  ++ +LR     +       T+++LS   + +  
Sbjct: 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170

Query: 498 LGRK--TRVVKGLMDLVKGGPTSSKRDALV--------------AILNLAGDRETVGRLV 541
           +       +   ++    G       D                  + N++ +R    R +
Sbjct: 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL 230

Query: 542 --ERGIVE----IVAEAMDVLPEESVTILEAVVKRGGLT--------------------- 574
               G+V+    IV   +     +S  +   V     L+                     
Sbjct: 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290

Query: 575 -----------AIVAAYNTIKKLCILLREGSD-TSRESAAATLVTIC--RKGGSEMVADI 620
                       ++     ++    LL+E       E++A  +  +C  R      +   
Sbjct: 291 NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350

Query: 621 AAVPGIERVIWELMESGTARARRKAAALLRIL 652
                    I +L+ +   R  + A+  LR L
Sbjct: 351 LRQEKALSAIADLLTNEHERVVKAASGALRNL 382

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 44/272 (16%), Positives = 91/272 (33%), Gaps = 44/272 (16%)

Query: 379 KLATSQSMEAANDAVYELRSLSKTDSDSR-ACIAEAGAIALLARHLGPDTASRLPNLQV- 436
           K    +      +    LR++S   S++R       G +  L   +  +   +  + ++ 
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 437 -NAVTTILNLSILEANK-------------------------TRIMETEGALNGVIEVLR 470
            N V  + NLS     +                           ++     +   I +L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 471 SGATWEAKGNAAATIFSLSGVHAHR----KTLGRKTRVVKGLMDLVKGGPTSSKRDALVA 526
              T      +A  I +L           ++  R+ + +  + DL+        + A  A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 527 ILNLAGDRETVGRLVERGIVEIVA-------EAMDVLPEESV-----TILEAVVKRGGLT 574
           + NLA D      + +  I  +V         +     E++V     TI E + +     
Sbjct: 379 LRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438

Query: 575 AIVAAYNTIKKLCILLREGSDTSRESAAATLV 606
             +     I+KL ++ + G+ + +E  AA LV
Sbjct: 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALV 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 3e-13
 Identities = 71/471 (15%), Positives = 133/471 (28%), Gaps = 128/471 (27%)

Query: 125 HELTIDLSTL----LDIMP--LQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRL 178
           H +  +         DI+         + D +DV  + K   SK     ++ SKD     
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 179 QVL-TTLDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAA 237
             L  TL   ++E+V       Q F    LR         + L   I+ +  Q S     
Sbjct: 65  LRLFWTLLSKQEEMV-------QKFVEEVLR------INYKFLMSPIKTEQRQPSMMT-- 109

Query: 238 ALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRC-PIS------LELMRNPV 290
                  Y +          +D+++  K      NV    R  P        LEL     
Sbjct: 110 -----RMYIEQR----DRLYNDNQVFAKY-----NVS---RLQPYLKLRQALLELRPAKN 152

Query: 291 VVATG--------------QTYDRQSIS----LWIESGHNTCPKTGQTLAHTNLVTNTAL 332
           V+  G               +Y  Q        W+   +  C      L     +     
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVLEMLQKLLYQID 210

Query: 333 KNLIALWCREQRIPFDYAASSEKVNGV---------------VTNKAALEA------TKM 371
            N  +       I     +   ++  +               V N  A  A        +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 372 T------ASFLINKLATSQSMEAANDAVY--ELRSL-------SKTDSDSRACIAEAGAI 416
           T        FL     T  S++  +  +   E++SL          D            +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 417 ALLARHL--GPDTASRLPNLQVNAVTTILNLSI--LEANKTR-------IMETEGAL--N 463
           +++A  +  G  T     ++  + +TTI+  S+  LE  + R       +     A    
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPT 389

Query: 464 GVIEVLRSGATW-EAKGNAAATIFSLSGVHAHRKTL--GRKTRVVKGLMDL 511
            ++ ++     W +   +    + +      H+ +L   +       +  +
Sbjct: 390 ILLSLI-----WFDVIKSDVMVVVNKL----HKYSLVEKQPKESTISIPSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 9e-09
 Identities = 68/539 (12%), Positives = 129/539 (23%), Gaps = 199/539 (36%)

Query: 6   QIFPPRKRRPSAGAFISPTLSDLKLVESLLILSQEVSSMKPLQ-FLLQRSCLSIIRKVKL 64
                + R  S  A +   L        LL+L   V + K    F L   C       K+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLS--C-------KI 268

Query: 65  LSLFFEELLANQVSFFSPPTVLCFEEMYIVLQRMKTLIEDCYNGSKMWLLMQIETAANNF 124
           L     + + + +S  +  T +  +   + L   +          K +L  + +      
Sbjct: 269 LLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVK-SLL---LK-YLDCRPQ------ 316

Query: 125 HELTIDL-STLLDIMPLQELRLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTT 183
                DL   +L   P             + +I            +  +D          
Sbjct: 317 -----DLPREVLTTNPR-----------RLSII---------AESI--RDGLATWDNWKH 349

Query: 184 LDQIKKEIVPDHSILKQMFESLGLRNSSACKEEIESLEEEIQNQTDQKSKHFAAALIGLV 243
           ++  K         L  + ES     S      +  LE     +                
Sbjct: 350 VNCDK---------LTTIIES-----S------LNVLEPAEYRK---------------- 373

Query: 244 RYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSI 303
            + +  +F                   A++P        L L                  
Sbjct: 374 MFDRLSVF------------PP----SAHIPTI-----LLSL------------------ 394

Query: 304 SLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR--IP---FDYAASSEKVNG 358
            +W +   +        L            +L+    +E    IP    +     E    
Sbjct: 395 -IWFDVIKSDVMVVVNKLHK---------YSLVEKQPKESTISIPSIYLELKVKLE---- 440

Query: 359 VVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIAL 418
              N+ AL  +      +++               Y +      DSD             
Sbjct: 441 ---NEYALHRS------IVDH--------------YNIP--KTFDSDDLIPPYLDQYFYS 475

Query: 419 -LARHLGP----DTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGA 473
            +  HL      +  +    +        L+   LE  K R                   
Sbjct: 476 HIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQ-KIR---------------HDST 512

Query: 474 TWEAKGNAAATIFSLSGVHAH-RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA 531
            W A G+   T+  L     +      +  R+V  ++D +     +        +L +A
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 71.4 bits (174), Expect = 3e-13
 Identities = 38/310 (12%), Positives = 83/310 (26%), Gaps = 39/310 (12%)

Query: 371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASR 430
           +T    +  L +SQ  +      Y ++     D  ++  + + G I  L   L     S 
Sbjct: 2   LTIPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SP 56

Query: 431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG 490
             N+Q  A   + NL             +  +   + +LR     E +      +++LS 
Sbjct: 57  NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116

Query: 491 VHAHRKTLGRK--TRVVKGLMDLVKGGPTSS------------KRDALVAILNLAGDRET 536
               ++ L       +   ++    G    +              +A   + NL+     
Sbjct: 117 TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 537 VGRLVERG-----IVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR 591
              +         ++  V   +     +  ++   +     L+  + A     +   L  
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-EVPTRYRQLEY 235

Query: 592 EGSDTSRESAAATLVTICRKGGSEMVADIAAV--------------PGIERVIWELMESG 637
              +   E ++    +           D                      R    LM   
Sbjct: 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295

Query: 638 TARARRKAAA 647
              A  +A A
Sbjct: 296 KKDATLEACA 305

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 35/308 (11%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA----------GAIALLARHLGP 425
            ++ L  + + E        L +LS TD      IA+A                  +   
Sbjct: 91  AVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNM 150

Query: 426 DTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATI 485
                 P +  NA   + NLS  +A +  +    G ++ ++  +++        + +   
Sbjct: 151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN 210

Query: 486 FSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSK--------------RDALVAILNLA 531
                 +   +         + L    +   T                  +    +    
Sbjct: 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270

Query: 532 GDRETVGRLVERGIVEIVAEAMDVLPEESV-----------TILEAVVKRGGLTAIVAAY 580
            + +  G L     +      M    +++            T  + ++  G    I    
Sbjct: 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330

Query: 581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTAR 640
             + ++  LL+ G+     S A+ L  + R      V      P + R++     + +  
Sbjct: 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNS 390

Query: 641 ARRKAAAL 648
               ++A 
Sbjct: 391 EDILSSAC 398

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 42/302 (13%), Positives = 86/302 (28%), Gaps = 26/302 (8%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPN-- 433
             N        E   +A   LR+LS  D+  +     +G I  L  ++    A+   +  
Sbjct: 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206

Query: 434 LQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATW--------EAKGNAAATI 485
              N +  + NLS     +      +   N         +T             N    +
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266

Query: 486 FSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGI 545
                       L     +   L  + K    ++      A+ NL   +  +   + + I
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326

Query: 546 VE---IVAEAMDVLPEESVTILEAVVK------RGGLTAIVAAYNTIKKLCILLREG--- 593
                 + +   +L   +  ++ +         R  L   V       ++  LL      
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN 386

Query: 594 ---SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLR 650
              S+    SA  T+  +      ++     +   +  +I     S + +A   A  LL 
Sbjct: 387 TSNSEDILSSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 651 IL 652
            +
Sbjct: 446 DM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 2/124 (1%)

Query: 376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPN-L 434
            I +L  S + +        L ++S+        +       +          +     +
Sbjct: 335 QIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDI 393

Query: 435 QVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH 494
             +A  T+ NL   +    +   +   LN +I + RS A+ +A   A   +  +      
Sbjct: 394 LSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL 453

Query: 495 RKTL 498
           +  L
Sbjct: 454 QGVL 457

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 275 ADFRCPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV 327
           +   C IS ++ R PV+   +   +++  +  +++      P T + L+   +V
Sbjct: 2   SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV 54

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVAT-GQTYDRQSIS-LWIESGHNTCPKTGQTLAHT 324
            + D  +P +  C I  ++M + VV+   G +Y  + I    +ES  +TCP   Q     
Sbjct: 4   GSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63

Query: 325 -NLVTNTALKNLIALWCREQRIPFDYAASSEK 355
             L+ N  L+  +  +  E      Y     K
Sbjct: 64  DALIANKFLRQAVNNFKNET----GYTKRLRK 91

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 58.8 bits (142), Expect = 7e-10
 Identities = 34/241 (14%), Positives = 72/241 (29%), Gaps = 28/241 (11%)

Query: 371 MTASFLINKLATSQSMEA-ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS 429
           MT    ++ L     + +  + A   ++      S++R  + +   I  L + L      
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL----KV 63

Query: 430 RLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL 488
           +  ++Q      + NL      NK  + E    +  +++VL+     E K      +++L
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNL 122

Query: 489 SGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEI 548
           S     +  +       + L+ L +           + I           +       +I
Sbjct: 123 SSNDKLKNLMIT-----EALLTLTE----------NIIIPFSGWPEGDYPKANGLLDFDI 167

Query: 549 VAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTI 608
                  L   S    +         A+      I  L   +R      +    AT   +
Sbjct: 168 FYNVTGCLRNMSSAGADG------RKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCV 221

Query: 609 C 609
           C
Sbjct: 222 C 222

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 44/310 (14%), Positives = 85/310 (27%), Gaps = 25/310 (8%)

Query: 351 ASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACI 410
            S    +  +       A K+  +     +   +  +    A   L  L+         I
Sbjct: 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417

Query: 411 AEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLR 470
            +  +I  L             +     VTT +NL      +  + E         + + 
Sbjct: 418 EDKASIHALMDLA----RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIP 473

Query: 471 SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL 530
                +                  R T+     +   L  L K    +S+      +  +
Sbjct: 474 EEHELDDVDFINK-----------RITVLANEGITTALCALAKTESHNSQELIARVLNAV 522

Query: 531 AGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLT-------AIVAAYNTI 583
            G +E  G++V+ G V+ +        E+        + R G+T       +   + + I
Sbjct: 523 CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582

Query: 584 KKLCILLREGSDT-SRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARAR 642
           + L  LL++         +   L  +     S     I         I   +        
Sbjct: 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE--QGVSKIEYYLMEDHLYLT 640

Query: 643 RKAAALLRIL 652
           R AA  L  L
Sbjct: 641 RAAAQCLCNL 650

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 264 RKKSASDANVPADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCPKTGQTLA 322
                S  ++   FRC I +E +R+  +     +      I  W+      CP     L 
Sbjct: 10  HMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69

Query: 323 HTNLVTNTALKNLI 336
              LV     + + 
Sbjct: 70  LRELVNCRWAEEVT 83

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVAT-GQTYDRQSI-SLWIESGHNTCPKTGQTL 321
           S  D  +P +  C I  ++M + VV+   G +Y  + I +  +ES  +TCP   Q  
Sbjct: 6   SGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 10/227 (4%)

Query: 363 KAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARH 422
           K+ L            +   +   +    A+  L  L + + D+ A   +   + LL   
Sbjct: 31  KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGR 89

Query: 423 LGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAA 482
                 +    L+  A   I   S   A     +   GAL  ++ +L   A    +  A 
Sbjct: 90  Y---LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 483 ATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLV 541
             I  L            +      LM  ++      K  +   + NL  G  E  G L 
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206

Query: 542 ERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCI 588
             G+V+ +   + ++  E     E V+  G L ++V  +    + C 
Sbjct: 207 SMGMVQQL---VALVRTEHSPFHEHVL--GALCSLVTDFPQGVRECR 248

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 271 ANVPADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN 329
             +    RC I  E     +++      Y    I  ++      CP    T+   +L  N
Sbjct: 17  KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNN 75

Query: 330 TALKNLIALWCREQRIPFDYAASS 353
             L  L+      +     +A  S
Sbjct: 76  RILDELVKSLNFARNHLLQFALES 99

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT-N 325
               + V   F+C    EL+  P+         +  +     +   +CP     L  +  
Sbjct: 43  QLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYA 102

Query: 326 LVTNTALKNLI 336
           +  N  L+ ++
Sbjct: 103 MQVNQPLQTVL 113

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 15/64 (23%), Positives = 24/64 (37%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTAL 332
           + + + CPI L  +R  V    G  + +  I   I    + CP   + L    L  +   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 333 KNLI 336
           K  I
Sbjct: 75  KREI 78

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNT-----CPKTGQTL 321
           S+    +  +  CPI LEL++ PV      ++ R  I+L  ES  NT     CP      
Sbjct: 10  SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69

Query: 322 AHTNLVTNTALKNLI 336
              NL  N  + N++
Sbjct: 70  PFGNLKPNLHVANIV 84

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCP-------KTGQTLAHTNLVT 328
           + +C I +E++  PV +    T  +      +E     CP          +     N + 
Sbjct: 15  ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 329 NTALKNLIALWCREQ 343
           N  L  +I      +
Sbjct: 75  NVELWTIIQKHYPRE 89

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 271 ANVPADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCP----KTGQTLAHTN 325
             +     C +      +   +     ++ +  I  ++E+    CP    +  +T    N
Sbjct: 10  TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLN 68

Query: 326 LVTNTALKNLI 336
           + ++  L++++
Sbjct: 69  IRSDKTLQDIV 79

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVAT-GQTYDRQSISLWIESGHNTCPKTGQTLAHT- 324
             S  ++ ++  CPI L++++N +        +    I   + SG+  CP   + L    
Sbjct: 45  VVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104

Query: 325 NLVTNTALKNLIA 337
           +L  +     LI+
Sbjct: 105 SLRPDPNFDALIS 117

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTAL 332
           + + + CPI L  +R  V    G  + +  I   I    + CP   + L    L  +   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 333 KNLI 336
           K  I
Sbjct: 75  KREI 78

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT-NLVTNTALKN 334
            F C    EL+  PV         +  +    ++   +CP     L     ++ N  L+ 
Sbjct: 78  SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137

Query: 335 LI 336
           L+
Sbjct: 138 LL 139

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 6/54 (11%), Positives = 19/54 (35%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326
           V   ++C     ++ +P     G  +    ++  + S    C    +++    +
Sbjct: 12  VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCP 315
           S + A       C I L+   +PV +     +    +      G   C 
Sbjct: 6   SGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCA 53

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISL-WIESGHN-----TCPKTGQT 320
           S S  NV  +  CPI LEL+  P+ +  G +  R  I++   E+  +     +CP  G +
Sbjct: 3   SGSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62

Query: 321 LAHTNLVTNTALKNLI 336
            +  +L  N  L N++
Sbjct: 63  YSFEHLQANQHLANIV 78

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 259 DSRLRRKKSASD--ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTC 314
           D    R +   +    +     CPI LEL++ PV       + +  +   +    G + C
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 315 PKTGQTLAHTNLVTNTALKNLI 336
           P     +   +L  +T    L+
Sbjct: 62  PLCKNDITKRSLQESTRFSQLV 83

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 267 SASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLW-----IESGHNTCPKTGQTL 321
           S    NV  +  CPI LEL+  P+ +  G ++ +  ++       ++ G ++CP    + 
Sbjct: 10  SGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69

Query: 322 AHTNLVTNTALKNLI 336
              N+  N  + N++
Sbjct: 70  QPENIRPNRHVANIV 84

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 270 DANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT- 328
            A+      C I   ++ +PV  +    + R  I   ++   + CP        T+L + 
Sbjct: 17  PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76

Query: 329 NTALKNLI 336
             +  N++
Sbjct: 77  VKSFLNIL 84

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 19/48 (39%)

Query: 395 ELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTI 442
           E ++L K  +          ++ L A     D+A   P L + A  T+
Sbjct: 18  EKQALKKLQA----------SLKLYA----DDSA---PALAIKA--TM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	683
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.94
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.92
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.92
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.92
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.91
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.91
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.84
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.84
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.81
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.79
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.79
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.79
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.76
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.75
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.71
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.68
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.68
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.57
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.55
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.47
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.47
3grl_A	651	General vesicular transport factor P115; vesicle t	99.4
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.35
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.32
3grl_A	651	General vesicular transport factor P115; vesicle t	99.27
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.22
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.18
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.17
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.16
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.14
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.14
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.14
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.12
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.12
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.11
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.11
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.1
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.05
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.01
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.0
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.99
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.98
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.98
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.98
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.88
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.86
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.82
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.82
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.81
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.78
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.75
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.74
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.73
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.69
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.66
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.65
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.64
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.61
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.61
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.57
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.55
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.54
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.54
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.5
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.48
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.48
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.47
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.45
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.44
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.4
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.4
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.39
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.39
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.34
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.3
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.22
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.18
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.16
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.14
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.13
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.11
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.08
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.0
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.98
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.96
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.91
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.89
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.89
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.8
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.79
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.78
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.75
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.73
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.67
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.58
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.57
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.47
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.46
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.38
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.35
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.23
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.2
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.19
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.12
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.94
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.85
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.65
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.4
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.37
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.13
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	95.89
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.69
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	95.45
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.31
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.17
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	95.14
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.79
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.01
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	93.93
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	93.8
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	92.96
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.67
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	92.09
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.03
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.89
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.58
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.56
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	90.47
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	90.29
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.13
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	87.55
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	87.05
2x19_B	963	Importin-13; nuclear transport, protein transport;	86.08
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	85.9
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.52
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	85.48
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	84.89
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	84.8
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	83.49
2x1g_F	971	Cadmus; transport protein, developmental protein,	83.35
3nw0_A	238	Non-structural maintenance of chromosomes element	82.57

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.2e-29  Score=279.04  Aligned_cols=276  Identities=17%  Similarity=0.168  Sum_probs=235.2

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-ch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~  450 (683)
                      .++.||.+|.++ +++.|..|++.|++++.+++.++..+++.|+||.|+.+|+++    ++.+|+.|+++|.||+.+ ++
T Consensus         3 ~l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~~~~~A~~aL~nLa~~~~~   77 (457)
T 1xm9_A            3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred             CHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence            578899999999 999999999999999988887898999999999999999998    999999999999999987 89


Q ss_pred             hHHHHhcccCcHHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc--------CC------
Q 048793          451 NKTRIMETEGALNGVIEVLR-SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK--------GG------  515 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~-~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~--------~~------  515 (683)
                      +|..|++. |+|+.|+++|+ ++ +.+.++.|+++|++|+..++++..++.  |++|+|+.+|.        ++      
T Consensus        78 ~k~~i~~~-G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           78 NKLETRRQ-NGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHHHHHHT-TCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHHHHHHc-CCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcc
Confidence            99999998 99999999999 77 799999999999999999889998885  99999999993        22      


Q ss_pred             --ChhHHHHHHHHHHHhcCCcchhHHHHhc-CchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHHH---------
Q 048793          516 --PTSSKRDALVAILNLAGDRETVGRLVER-GIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTAI---------  576 (683)
Q Consensus       516 --~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e~---------  576 (683)
                        +..+.++|+++|+|||.+++++..++++ |++++|+.+|.+       +....+.+++.|.+++...+.         
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~  233 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence              2345569999999999998899999998 999999999973       234578888888776522110         


Q ss_pred             ---------------------------------------------HHHcCchHHHHHHHhc-CChHHHHHHHHHHHHHHh
Q 048793          577 ---------------------------------------------VAAYNTIKKLCILLRE-GSDTSRESAAATLVTICR  610 (683)
Q Consensus       577 ---------------------------------------------~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~  610 (683)
                                                                   ....|.++.|+.+|.. .++..++.|+++|++||.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~  313 (457)
T 1xm9_A          234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence                                                         0012446778888875 468999999999999998


Q ss_pred             cCCch--HH-HHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          611 KGGSE--MV-ADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       611 ~~~~~--~~-~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +....  .. +.++.+.|+++.|+.|+.+++.++++.|+|+|+++....
T Consensus       314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            65432  22 445667899999999999999999999999999998843

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=2.1e-28  Score=276.38  Aligned_cols=279  Identities=15%  Similarity=0.146  Sum_probs=237.1

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-  448 (683)
                      .+.++.||.+|.++ +++.|..|++.|++++..++++|..|++.|+||.||.+|.++    +..+|++|+++|.||+.+ 
T Consensus        47 ~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~----~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           47 QPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP----KKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS----SHHHHHHHHHHHHHHTSSS
T ss_pred             cccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC----CHHHHHHHHHHHHHHHccC
Confidence            35688999999999 999999999999999998889999999999999999999999    999999999999999984 


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc--------------
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK--------------  513 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~--------------  513 (683)
                       ++||..|++. |+|++||.+|+++.+.+++++|+++|++||..++++..|+.  |+|++|+++|.              
T Consensus       122 ~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~  198 (584)
T 3l6x_A          122 DQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDC  198 (584)
T ss_dssp             CHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC-------
T ss_pred             CHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccc
Confidence             7999999998 99999999999854789999999999999999999999985  57999999872              


Q ss_pred             ----CCChhHHHHHHHHHHHhcCCcc-hhHHHHhc-CchHHHHHHhcc-------CchhHHHHHHHHHHcCCcHHHHH--
Q 048793          514 ----GGPTSSKRDALVAILNLAGDRE-TVGRLVER-GIVEIVAEAMDV-------LPEESVTILEAVVKRGGLTAIVA--  578 (683)
Q Consensus       514 ----~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~a-G~V~~Lv~lL~~-------~~~~~~~aL~~L~~l~~~~e~~~--  578 (683)
                          ..+..++++|+++|+||+.+.+ ++..++++ |+|++||.+|.+       +...++.|+++|.+++.+.+...  
T Consensus       199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~  278 (584)
T 3l6x_A          199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ  278 (584)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence                1235788999999999999875 59999885 667899999963       23458889999988775432110  


Q ss_pred             ------------------Hc---------CchHHHHHHHhc-CChHHHHHHHHHHHHHHhcCCc--hHHHHHHhcCCcHH
Q 048793          579 ------------------AY---------NTIKKLCILLRE-GSDTSRESAAATLVTICRKGGS--EMVADIAAVPGIER  628 (683)
Q Consensus       579 ------------------~~---------g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~~~~~--~~~~~~~~~~G~~~  628 (683)
                                        ..         +.++.|+.+|.. .++.++|+|+++|++||.+...  ...+..+.+.|+++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                              11         235567888864 5799999999999999986532  23345677789999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          629 VIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       629 ~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      .|+.|+.++++++++.|.++|++|....
T Consensus       359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          359 AIADLLTNEHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence            9999999999999999999999999854

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=5.1e-29  Score=267.36  Aligned_cols=266  Identities=20%  Similarity=0.154  Sum_probs=224.7

Q ss_pred             HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC-------CCCCChhhHHHHHHHHHhcccCch-hHHHHhc
Q 048793          386 MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD-------TASRLPNLQVNAVTTILNLSILEA-NKTRIME  457 (683)
Q Consensus       386 ~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~-------~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~  457 (683)
                      .+.+..|+++|.+++.+ +++|..|++.|++|.|+.+|.+.       ....++.+|++|+++|.||+.+++ +|..|..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45566899999999987 57999999999999999999521       000146799999999999998764 7777765


Q ss_pred             ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcC-C
Q 048793          458 TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAG-D  533 (683)
Q Consensus       458 ~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~  533 (683)
                      ..|+|+.||.+|+++ +.++++.|+++|++|+..  +++|..|++ .|+|++||++| ++++...++.|+.+|+||+. +
T Consensus       125 ~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            437799999999988 799999999999999985  568999988 89999999975 66778899999999999999 6


Q ss_pred             cchhHHHH-hcCchHHHHHHhccCc-----hhHHHHHHHHHHcC----CcHHHHH---HcCchHHHHHHHhcCChHHHHH
Q 048793          534 RETVGRLV-ERGIVEIVAEAMDVLP-----EESVTILEAVVKRG----GLTAIVA---AYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       534 ~~n~~~iv-~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~----~~~e~~~---~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      ++|+..++ .+|+|+.|+++|....     +..+.|.++|.+++    ++++.+.   ..|+++.|+.+|++++..++++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            68998888 7999999999998542     35777888887766    4666544   3588999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      |+++|++|+..+  ...++.+.+.|+++.|+.|+.++++++++.|++.|++|....
T Consensus       283 A~~aL~nLa~~~--~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          283 ACGTLWNLSARN--PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHHHHTSSC--HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999743  334566788999999999999999999999999999999863

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=4e-28  Score=268.17  Aligned_cols=263  Identities=20%  Similarity=0.158  Sum_probs=221.6

Q ss_pred             HHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCC-------CCCCChhhHHHHHHHHHhcccCch-hHHHHhcccC
Q 048793          389 ANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPD-------TASRLPNLQVNAVTTILNLSILEA-NKTRIMETEG  460 (683)
Q Consensus       389 ~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~-------~~~~d~~~qe~A~~aL~nLs~~~~-~k~~I~~~~G  460 (683)
                      +..|+++|.+++.+ ++||..|.+.|++++|+.+|...       ....++.++++|+++|.||+.+++ ++..|....|
T Consensus       165 ~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            34999999999775 67999999999999999999421       000146789999999999998765 6767754437


Q ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcC-Ccch
Q 048793          461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGV--HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAG-DRET  536 (683)
Q Consensus       461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~--~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n  536 (683)
                      +|+.||.+|+++ +.++++.|+++|.+|+..  +++|..|++ .|+|++||++| .+++...++.|+.+|+||+. +++|
T Consensus       244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n  321 (458)
T 3nmz_A          244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  321 (458)
T ss_dssp             HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence            799999999988 799999999999999985  568899988 89999999975 55678899999999999999 7789


Q ss_pred             hHHHH-hcCchHHHHHHhccCc-----hhHHHHHHHHHHcC----CcHHHHH---HcCchHHHHHHHhcCChHHHHHHHH
Q 048793          537 VGRLV-ERGIVEIVAEAMDVLP-----EESVTILEAVVKRG----GLTAIVA---AYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       537 ~~~iv-~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~----~~~e~~~---~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      +..++ .+|++++|+++|....     +..+.|.++|.+++    ++++.+.   ..|+++.|+.+|++++..++++|++
T Consensus       322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~  401 (458)
T 3nmz_A          322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  401 (458)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHH
Confidence            99998 7999999999998532     35777888887766    4665543   4589999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +|++|+..+  ...+..+.+.|++++|+.|+.++++++++.|++.|++|....
T Consensus       402 aL~nLa~~~--~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          402 TLWNLSARN--PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHSSC--HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999743  334566778899999999999999999999999999998754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=3.6e-27  Score=253.00  Aligned_cols=249  Identities=12%  Similarity=0.102  Sum_probs=213.7

Q ss_pred             chhhhHHHhhhhHHHHHHHhccC----------CCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCC
Q 048793          361 TNKAALEATKMTASFLINKLATS----------QSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTAS  429 (683)
Q Consensus       361 ~~~~~i~~~~~~i~~Lv~~L~s~----------~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~  429 (683)
                      ++|..+. ..|+++.|+.+|.+.          .+++.|..|+++|.+++..++.+|..+.. .|+||.|+.+|+++   
T Consensus        64 e~R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~---  139 (354)
T 3nmw_A           64 EHRHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE---  139 (354)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS---
T ss_pred             HHHHHHH-HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC---
Confidence            3455554 678999999999521          14678999999999999988878988865 56799999999998   


Q ss_pred             CChhhHHHHHHHHHhcccC--chhHHHHhcccCcHHHHHHHH-hcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccH
Q 048793          430 RLPNLQVNAVTTILNLSIL--EANKTRIMETEGALNGVIEVL-RSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVV  505 (683)
Q Consensus       430 ~d~~~qe~A~~aL~nLs~~--~~~k~~I~~~~G~I~~Lv~lL-~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i  505 (683)
                       +.++++.|+++|.||+.+  +++|..|++. |+|++||++| +++ +.+.++.|+++|++|+. .++++..|+...|+|
T Consensus       140 -~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~-G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai  216 (354)
T 3nmw_A          140 -SEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGAL  216 (354)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-THHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHH
T ss_pred             -CHHHHHHHHHHHHHHhccCCHHHHHHHHHC-CCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcH
Confidence             999999999999999974  5789999988 9999999986 455 78999999999999999 678999998448999


Q ss_pred             HHHHHhhcCCCh----hHHHHHHHHHHHhcC----CcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHH
Q 048793          506 KGLMDLVKGGPT----SSKRDALVAILNLAG----DRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTA  575 (683)
Q Consensus       506 ~~Lv~lL~~~~~----~~~~~A~~aL~nLs~----~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e  575 (683)
                      +.|+++|.++++    .++++|+++|+||+.    +++++..++++|++++|+++|.++ .+..+.|+++|.+++ ++++
T Consensus       217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~  296 (354)
T 3nmw_A          217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK  296 (354)
T ss_dssp             HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH
Confidence            999999987764    488999999999995    788999999999999999999865 345889999999988 4555


Q ss_pred             HH---HHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchH
Q 048793          576 IV---AAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEM  616 (683)
Q Consensus       576 ~~---~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~  616 (683)
                      .+   ...|+++.|+.+|.+++++++++|+++|.+|+.+.+...
T Consensus       297 ~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          297 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            44   445999999999999999999999999999999877643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=1.2e-26  Score=258.26  Aligned_cols=278  Identities=15%  Similarity=0.088  Sum_probs=228.6

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|+|+.||++|+++ +++.+..|+++|++++.+++++|..|++.|+||.|+.+|. ++    ++++++.|+++|.||+.
T Consensus        42 ~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~----~~~~~~~a~~aL~nLa~  116 (457)
T 1xm9_A           42 QLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG----NAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC----CHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC----CHHHHHHHHHHHHHHhc
Confidence            678999999999998 9999999999999999988899999999999999999999 77    89999999999999999


Q ss_pred             CchhHHHHhcccCcHHHHHHHHh--------cC-------CCHHHHHHHHHHHHHhhcCcchhhHHhhhc-ccHHHHHHh
Q 048793          448 LEANKTRIMETEGALNGVIEVLR--------SG-------ATWEAKGNAAATIFSLSGVHAHRKTLGRKT-RVVKGLMDL  511 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~--------~~-------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~-G~i~~Lv~l  511 (683)
                      ++++|..|++  |+++.|+.+|.        ++       .+.+..++|+++|+||+..++++..+.+ . |++++|+.+
T Consensus       117 ~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~l  193 (457)
T 1xm9_A          117 TDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAY  193 (457)
T ss_dssp             SSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHH
T ss_pred             CHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHH
Confidence            9889988886  89999999993        22       1345666999999999999889999887 6 999999988


Q ss_pred             hcCC----------------------------------------------------------------------------
Q 048793          512 VKGG----------------------------------------------------------------------------  515 (683)
Q Consensus       512 L~~~----------------------------------------------------------------------------  515 (683)
                      |.++                                                                            
T Consensus       194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (457)
T 1xm9_A          194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP  273 (457)
T ss_dssp             HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred             HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence            8631                                                                            


Q ss_pred             -----------------------ChhHHHHHHHHHHHhcCCcch------hHHHHhcCchHHHHHHhccCc-hhHHHHHH
Q 048793          516 -----------------------PTSSKRDALVAILNLAGDRET------VGRLVERGIVEIVAEAMDVLP-EESVTILE  565 (683)
Q Consensus       516 -----------------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~  565 (683)
                                             ++..++.|+++|.||+.....      +..+.++|++|.|+++|.++. +....|++
T Consensus       274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~  353 (457)
T 1xm9_A          274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS  353 (457)
T ss_dssp             CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHH
Confidence                                   123456688999999875432      223346899999999998653 45777788


Q ss_pred             HHHHcCCcHHHHH--HcCchHHHHHHHhcCCh------HHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC
Q 048793          566 AVVKRGGLTAIVA--AYNTIKKLCILLREGSD------TSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG  637 (683)
Q Consensus       566 ~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~------~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~  637 (683)
                      .|.+++.+.+...  ..|+++.|+.+|..+++      .+...++++|.++..++++  ....+.+.|+++.|+.|+.++
T Consensus       354 aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~--~~~~i~~~g~l~~L~~L~~~~  431 (457)
T 1xm9_A          354 LLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ--LAKQYFSSSMLNNIINLCRSS  431 (457)
T ss_dssp             HHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH--HHHHHCCHHHHHHHHHHHHCT
T ss_pred             HHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH--HHHHHHHcCCHHHHHHHHcCC
Confidence            8887765544332  23789999999987643      5777899999999886543  456688899999999999999


Q ss_pred             -CHHHHHHHHHHHHHHHhhh
Q 048793          638 -TARARRKAAALLRILRRWA  656 (683)
Q Consensus       638 -~~~~k~kA~~lL~~l~~~~  656 (683)
                       +++++++|.++|.++-.+.
T Consensus       432 ~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          432 ASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             TCHHHHHHHHHHHHTTSSST
T ss_pred             CcHHHHHHHHHHHHHHHcch
Confidence             9999999999999876544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=4.1e-26  Score=265.83  Aligned_cols=287  Identities=13%  Similarity=0.145  Sum_probs=242.9

Q ss_pred             chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-----------------------------hhH---H
Q 048793          361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-----------------------------DSR---A  408 (683)
Q Consensus       361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-----------------------------~nr---~  408 (683)
                      ..+..+....|.++.||.+|+++ +...+..|++.|.+++.+.+                             .++   .
T Consensus       411 ~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~  489 (810)
T 3now_A          411 ECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRIT  489 (810)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHH
Confidence            34445555678999999999998 89999999999999998652                             123   6


Q ss_pred             HHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048793          409 CIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL  488 (683)
Q Consensus       409 ~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~L  488 (683)
                      .++++|+||.|+.+|+++    ++.+|+.|+++|.||+.+++++..|++. |++++|+.+|+++ +...+++|+++|.+|
T Consensus       490 ~VveaGaVp~LV~LL~s~----s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~-Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL  563 (810)
T 3now_A          490 VLANEGITTALCALAKTE----SHNSQELIARVLNAVCGLKELRGKVVQE-GGVKALLRMALEG-TEKGKRHATQALARI  563 (810)
T ss_dssp             HHHHTTHHHHHHHHHTCC----CHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            788999999999999999    9999999999999999998999999998 9999999999999 699999999999999


Q ss_pred             hcCcchhhHHh--hhcccHHHHHHhhcCCCh-hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHH
Q 048793          489 SGVHAHRKTLG--RKTRVVKGLMDLVKGGPT-SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTI  563 (683)
Q Consensus       489 s~~~~~~~~i~--~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~a  563 (683)
                      +...+....+.  ...|+||+|+.+|.++.. ..+.+|++||.||+.++ +++..++++|+++.|+++|.++ ......|
T Consensus       564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A  643 (810)
T 3now_A          564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA  643 (810)
T ss_dssp             HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHH
T ss_pred             hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHH
Confidence            97654443332  125799999999986533 44578999999999974 6899999999999999999864 4568889


Q ss_pred             HHHHHHcCCcHHHHHH----cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCH
Q 048793          564 LEAVVKRGGLTAIVAA----YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTA  639 (683)
Q Consensus       564 L~~L~~l~~~~e~~~~----~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~  639 (683)
                      +..|++++.+++....    .|.++.|+.++...+..+++.|+++|.+|+.++. ...+.++...|+++.|+.|+.+++.
T Consensus       644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~-~~~~~ii~~~g~I~~Lv~LL~s~d~  722 (810)
T 3now_A          644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV-KCCEKILAIASWLDILHTLIANPSP  722 (810)
T ss_dssp             HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH-HHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred             HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHHcCCHHHHHHHHCCCCH
Confidence            9999998877665433    3679999999999999999999999999998543 3445555448999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 048793          640 RARRKAAALLRILRRW  655 (683)
Q Consensus       640 ~~k~kA~~lL~~l~~~  655 (683)
                      ++|+.|.|.|.++...
T Consensus       723 ~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          723 AVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999763

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.94  E-value=4.3e-26  Score=251.93  Aligned_cols=284  Identities=17%  Similarity=0.121  Sum_probs=232.1

Q ss_pred             hhhhHHHHHHHhccC-----------CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcH----------HHHHHhhCCCC
Q 048793          369 TKMTASFLINKLATS-----------QSMEAANDAVYELRSLSKTDSDSRACIAEAGAI----------ALLARHLGPDT  427 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~-----------~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~I----------p~Lv~lL~s~~  427 (683)
                      ..|.+|.||++|...           .+++.+.+|+|+|.+++...++......+.|++          +.+++++.+..
T Consensus        68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            579999999999863           147999999999999999999888888888988          77788888762


Q ss_pred             CCCC---hhhHH-------HHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcC----------CCHHHHHHHHHHHHH
Q 048793          428 ASRL---PNLQV-------NAVTTILNLSILEANKTRIMETEGALNGVIEVLRSG----------ATWEAKGNAAATIFS  487 (683)
Q Consensus       428 ~~~d---~~~qe-------~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~----------~~~~~~~~Aa~~L~~  487 (683)
                      ...+   ..+++       .|+++|.|++.++++|..|++. |++++|+.+|...          .++..+++|+++|.|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            1111   01333       8999999999999999999998 9999999999521          136789999999999


Q ss_pred             hhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC--cchhHHHHhcCchHHHHHHhcc-C-chhHHH
Q 048793          488 LSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD--RETVGRLVERGIVEIVAEAMDV-L-PEESVT  562 (683)
Q Consensus       488 Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~aG~V~~Lv~lL~~-~-~~~~~~  562 (683)
                      |+..++ ++..+....|+||+||.+|.++++++++.|+++|.||+..  ++|+..++++|+|++|+++|.. . .+..+.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~  306 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS  306 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence            998776 7777755467799999999999999999999999999985  5689999999999999998643 3 345667


Q ss_pred             HHHHHHHcCC-cHHH---HH-HcCchHHHHHHHhcCCh----HHHHHHHHHHHHHHhc--CCchHHHHHHhcCCcHHHHH
Q 048793          563 ILEAVVKRGG-LTAI---VA-AYNTIKKLCILLREGSD----TSRESAAATLVTICRK--GGSEMVADIAAVPGIERVIW  631 (683)
Q Consensus       563 aL~~L~~l~~-~~e~---~~-~~g~v~~Lv~lL~~~s~----~~ke~A~~aL~~L~~~--~~~~~~~~~~~~~G~~~~L~  631 (683)
                      ++.+|.+++. +.+.   +. ..|+++.|+.+|..+++    ..+++|+++|++|+.+  ... ..++.+.+.|+++.|+
T Consensus       307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~~~~i~~~G~i~~Lv  385 (458)
T 3nmz_A          307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DHRQILRENNCLQTLL  385 (458)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHcccHHHHH
Confidence            7777777665 4332   22 45899999999987665    4899999999999962  223 3456678899999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHh
Q 048793          632 ELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       632 ~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .++.+++..+++.|+++|.++..
T Consensus       386 ~LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          386 QHLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHHcCCChHHHHHHHHHHHHHHc
Confidence            99999999999999999999984

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=1e-25  Score=254.23  Aligned_cols=280  Identities=14%  Similarity=0.128  Sum_probs=240.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.||.||++|+++.+++.|..|+|+|.+++.++++++..+++.|+||.|+.+|.++    +..+++.|+++|.||+.+
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~----~~~v~e~A~~aL~nLa~d  173 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGD  173 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC
Confidence            4689999999998653789999999999999999999999999999999999999999    999999999999999987


Q ss_pred             c-hhHHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          449 E-ANKTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      . +.+..+... |++++|+.+|.+..    ....+.+++++|.+++........+....|++|.|+.+|.+++++++..|
T Consensus       174 ~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A  252 (510)
T 3ul1_B          174 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  252 (510)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CHHHHHHHHHc-CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence            4 567777787 99999999998642    24578899999999999877666655557999999999999999999999


Q ss_pred             HHHHHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHH---HHHHcCchHHHHHHHhcCChHH
Q 048793          524 LVAILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTA---IVAAYNTIKKLCILLREGSDTS  597 (683)
Q Consensus       524 ~~aL~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e---~~~~~g~v~~Lv~lL~~~s~~~  597 (683)
                      +++|.+|+.+..++ ..++++|+++.|+++|.+. ......++.+|.+++. ..+   .+...|+++.|+.+|.+.++.+
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v  332 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  332 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence            99999999987654 5567899999999999864 4457788888888764 333   3345589999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      ++.|+++|.+|+.++.  .....+.+.|+++.|+.++.+++.++|+.|+++|.++...
T Consensus       333 ~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          333 QKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            9999999999998643  3456677899999999999999999999999999998763

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=2.1e-25  Score=252.77  Aligned_cols=280  Identities=14%  Similarity=0.137  Sum_probs=242.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.||.||++|..+.+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.++    +..+++.|+++|.||+.+
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~----~~~v~e~A~~aL~nLa~~  192 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGA  192 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcc
Confidence            4689999999997653799999999999999999998999999999999999999999    999999999999999986


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                       ++++..+... |++++|+.+|....    ......+++++|.+++........+....|++|.|+.+|.+++++++.+|
T Consensus       193 ~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a  271 (529)
T 3tpo_A          193 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  271 (529)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             CHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence             5678888887 99999999997542    24578899999999999877666655557999999999999999999999


Q ss_pred             HHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHH
Q 048793          524 LVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTS  597 (683)
Q Consensus       524 ~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~  597 (683)
                      +++|.+|+.+..+ ...++++|+++.|+++|.+. ......++.+|.+++. +.+.   +...|+++.|+.+|.+.++.+
T Consensus       272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i  351 (529)
T 3tpo_A          272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  351 (529)
T ss_dssp             HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred             HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence            9999999998765 45567899999999999864 4457788888888764 3333   344589999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      ++.|+++|.+|+.++.  .....+.+.|+++.|+.++.+++.++++.|+++|.++...
T Consensus       352 ~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          352 QKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999998653  3456677899999999999999999999999999998763

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.94  E-value=4.3e-25  Score=249.35  Aligned_cols=283  Identities=18%  Similarity=0.153  Sum_probs=221.2

Q ss_pred             hhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhcc-CchhHHHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHH
Q 048793          362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKT-DSDSRACIAEAGAIALLARHLGP-DTASRLPNLQVNAV  439 (683)
Q Consensus       362 ~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~-~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~  439 (683)
                      ++..+. ..|+|+.||++|.++ +.++|..|+++|++|+.+ +++||..|+++|+||.|+.+|.+ .    +.+++++|+
T Consensus        82 ~k~~V~-~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa  155 (584)
T 3l6x_A           82 VKTDVR-KLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR----DMDLTEVIT  155 (584)
T ss_dssp             HHHHHH-HTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC----SHHHHHHHH
T ss_pred             HHHHHH-HcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHH
Confidence            344444 578999999999999 999999999999999985 67899999999999999999997 4    788999999


Q ss_pred             HHHHhcccCchhHHHHhcccCcHHHHHHHHh-----------------cCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhh
Q 048793          440 TTILNLSILEANKTRIMETEGALNGVIEVLR-----------------SGATWEAKGNAAATIFSLSGVHA-HRKTLGRK  501 (683)
Q Consensus       440 ~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~-----------------~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~  501 (683)
                      .+|+|||.++++|..|+.  |+|+.|+++|.                 +..+.+++++|+++|+||+..++ +|..|+..
T Consensus       156 ~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~  233 (584)
T 3l6x_A          156 GTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC  233 (584)
T ss_dssp             HHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHS
T ss_pred             HHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence            999999999999999995  56999999872                 11147899999999999998765 58888875


Q ss_pred             cccHHHHHHhhcC------CChh---------------------------------------------------------
Q 048793          502 TRVVKGLMDLVKG------GPTS---------------------------------------------------------  518 (683)
Q Consensus       502 ~G~i~~Lv~lL~~------~~~~---------------------------------------------------------  518 (683)
                      .|+|++||.+|++      .+..                                                         
T Consensus       234 ~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L  313 (584)
T 3l6x_A          234 DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY  313 (584)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred             CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence            6777788887653      1223                                                         


Q ss_pred             -----------HHHHHHHHHHHhcCCc-----chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC---CcHHHHH
Q 048793          519 -----------SKRDALVAILNLAGDR-----ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG---GLTAIVA  578 (683)
Q Consensus       519 -----------~~~~A~~aL~nLs~~~-----~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~---~~~e~~~  578 (683)
                                 +++.|++||.|||.+.     .++..+.+.|+++.|+++|... .+....|+++|.+++   .+.+.+ 
T Consensus       314 l~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-  392 (584)
T 3l6x_A          314 ISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-  392 (584)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-
Confidence                       3445555555555432     1223334578899999999754 344555666665554   444444 


Q ss_pred             HcCchHHHHHHHhcC--------ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHH
Q 048793          579 AYNTIKKLCILLREG--------SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAAL  648 (683)
Q Consensus       579 ~~g~v~~Lv~lL~~~--------s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~l  648 (683)
                      ..|+++.||.+|..+        +..+...|+++|.+|+..+.  ...+.+.+.|+++.|+.|+.++  .+++++.|+++
T Consensus       393 ~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~--~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~v  470 (584)
T 3l6x_A          393 GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL--EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV  470 (584)
T ss_dssp             HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHH
Confidence            447899999999865        46778899999999998543  3566678999999999999987  89999999999


Q ss_pred             HHHHHhh
Q 048793          649 LRILRRW  655 (683)
Q Consensus       649 L~~l~~~  655 (683)
                      |.+|-.+
T Consensus       471 L~nl~~~  477 (584)
T 3l6x_A          471 LQTIWGY  477 (584)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHcC
Confidence            9999653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.93  E-value=2e-24  Score=251.71  Aligned_cols=283  Identities=13%  Similarity=0.094  Sum_probs=239.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|+++.|+.+|+++ ++..|..|+++|.+++.+ +++|..+++.|++|+|+.+|.++    +...+++|+++|.||+.+
T Consensus       493 eaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~----~~~~k~~Aa~AL~nL~~~  566 (810)
T 3now_A          493 NEGITTALCALAKTE-SHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEG----TEKGKRHATQALARIGIT  566 (810)
T ss_dssp             HTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccC----CHHHHHHHHHHHHHHhcC
Confidence            468999999999999 999999999999999975 56999999999999999999998    899999999999999875


Q ss_pred             chhHHHHh---cccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          449 EANKTRIM---ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       449 ~~~k~~I~---~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                      .+....+.   .. |++++|+.+|.++.+...+..|+++|.||+.. ++++..++. .|+++.|+.+|.++++.+++.|+
T Consensus       567 ~~p~~~~~~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~  644 (810)
T 3now_A          567 INPEVSFSGQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAA  644 (810)
T ss_dssp             SCHHHHTTTHHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHH
T ss_pred             CChhhhhcchhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHH
Confidence            44333221   13 68999999998664455667899999999987 568888888 89999999999999999999999


Q ss_pred             HHHHHhcCCcchhHHHHh-cCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHH-cCchHHHHHHHhcCChHH
Q 048793          525 VAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAA-YNTIKKLCILLREGSDTS  597 (683)
Q Consensus       525 ~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~-~g~v~~Lv~lL~~~s~~~  597 (683)
                      ++|.||+.+++++..+++ +|+++.|+.++.+. .+....|.++|++++. ++..   +.. .|+++.|+.++.+++...
T Consensus       645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~v  724 (810)
T 3now_A          645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV  724 (810)
T ss_dssp             HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHH
Confidence            999999999999988886 79999999999864 3457777888888765 3432   333 588999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHhhhccccc
Q 048793          598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG---TARARRKAAALLRILRRWAAGLDA  661 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~---~~~~k~kA~~lL~~l~~~~~~~~~  661 (683)
                      ++.|+++|.+++.+++  .....+.+.|++++|..|++..   +.++.+.|...|+.+-++..-...
T Consensus       725 q~~A~~aL~NL~~~s~--e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~  789 (810)
T 3now_A          725 QHRGIVIILNMINAGE--EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERS  789 (810)
T ss_dssp             HHHHHHHHHHHHTTCH--HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCC
Confidence            9999999999998543  3456688899999999998654   789999999999999998765443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.92  E-value=1.5e-23  Score=237.54  Aligned_cols=285  Identities=16%  Similarity=0.118  Sum_probs=240.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|+|+.|+.+|.++ +.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|..... .....++.+++++|.|++.
T Consensus       160 ~~Gaip~Lv~LL~s~-~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          160 DGGAIPAFISLLASP-HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            578999999999999 99999999999999999999999999999999999999987610 0123567899999999998


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      +......+....|+++.|+.+|.++ +.+++..|+++|.+|+.....+..++...|+++.|+.+|.+++..++..|+.+|
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            7655444443338999999999998 799999999999999988776555544489999999999999999999999999


Q ss_pred             HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .||+.+. +++..++++|+++.|+.+|.+. .+....|+++|.+++. +.+.   +...|.++.|+.++.+++..++..|
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            9998754 5778889999999999999864 4457788888888764 3433   3445889999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +++|.+++.++..+ ....+.+.|++++|+.|+.+.++++...+...|.++-++.
T Consensus       398 ~~aL~nl~~~~~~~-~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          398 AWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             HHHHHHHHHHSCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHH-HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999876543 3445778999999999999999999999999998886543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.92  E-value=4e-23  Score=233.48  Aligned_cols=278  Identities=15%  Similarity=0.153  Sum_probs=241.5

Q ss_pred             hhhhHHHHHHHhccCCC-HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQS-MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~-~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|.++.|+.+|.++ + +..+..|+++|.+++.++++++..+++.|+||.|+.+|.++    +..+++.|+++|.||+.
T Consensus       115 ~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~~  189 (528)
T 4b8j_A          115 QSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVAG  189 (528)
T ss_dssp             HTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHhC
Confidence            468999999999987 5 99999999999999999888999999999999999999998    99999999999999997


Q ss_pred             C-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          448 L-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      + +.++..+... |+++.|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++
T Consensus       190 ~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~a  267 (528)
T 4b8j_A          190 DSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWA  267 (528)
T ss_dssp             TCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            6 4567788887 99999999995444799999999999999988655555555 7999999999999999999999999


Q ss_pred             HHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcC-ChHHHH
Q 048793          527 ILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREG-SDTSRE  599 (683)
Q Consensus       527 L~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~-s~~~ke  599 (683)
                      |.+|+...+++ ..+++.|+++.|+.+|.+. ......|+.+|.+++. ....   ....|+++.|+.+|.+. ++.++.
T Consensus       268 L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~  347 (528)
T 4b8j_A          268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKK  347 (528)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHH
Confidence            99999877654 5678899999999999864 4568889999988875 3333   33458899999999988 999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .|+++|.+|+.++.  .....+...|+++.|+.++.++++.+++.|.++|.++...
T Consensus       348 ~A~~~L~nl~~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          348 EACWTISNITAGNK--DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHHHHTSCH--HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCH--HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99999999998532  2344566789999999999999999999999999999875

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.92  E-value=2e-23  Score=235.50  Aligned_cols=284  Identities=16%  Similarity=0.113  Sum_probs=239.3

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCC-CCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTA-SRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~-~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|+|+.|+.+|.++ +.+++..|+++|.+++.+++.+|..+.+.|+++.|+.+|.+... .....++.+++++|.|++.
T Consensus       141 ~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          141 DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            578999999999999 99999999999999999999999999999999999999987610 0123467899999999998


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      +......+....|+++.|+.+|.++ +.+++..|+++|.+|+....++..+....|+++.|+.+|.+++..++..|+++|
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            7655444443338999999999988 799999999999999988776655554489999999999999999999999999


Q ss_pred             HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .||+... .++..+++.|+++.|+.+|.+. .+....|+++|.+++. +.+.   +...|.++.|+.++.+++..++..|
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            9998765 5678889999999999999864 4457888888988764 3333   3445889999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +++|.+++.++..+ ....+.+.|+++.|+.|+.+.++++...+.+.|.++-++
T Consensus       379 a~aL~Nl~~~~~~~-~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          379 AWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHHHHHHCCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHH-HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999876544 344577899999999999999999999999998887654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.91  E-value=3.9e-23  Score=209.04  Aligned_cols=236  Identities=18%  Similarity=0.257  Sum_probs=211.4

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-c
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-E  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~  449 (683)
                      +.++.|+..|.++ +++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++    +..++..|+++|.+++.+ +
T Consensus         2 ~~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~   76 (252)
T 4hxt_A            2 NDVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPD   76 (252)
T ss_dssp             CHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCH
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHcCCh
Confidence            4578999999999 899999999999999999888999999999999999999998    999999999999999987 7


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS-GVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls-~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                      +++..+.+. |+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|+++|.++++.++..|+++|.
T Consensus        77 ~~~~~~~~~-~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~  153 (252)
T 4hxt_A           77 EAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA  153 (252)
T ss_dssp             HHHHHHHHT-THHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888887 9999999999988 7999999999999999 56678888887 899999999999999999999999999


Q ss_pred             HhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHHHH
Q 048793          529 NLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRESAA  602 (683)
Q Consensus       529 nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~  602 (683)
                      ||+.+.+ ++..+++.|+++.|+++|.+. ++....++.+|.+++. +++.   ....|+++.|+.++.++++.+++.|+
T Consensus       154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  233 (252)
T 4hxt_A          154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ  233 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence            9998654 568889999999999999864 4568888999988875 4443   34458899999999999999999999


Q ss_pred             HHHHHHHhcCCc
Q 048793          603 ATLVTICRKGGS  614 (683)
Q Consensus       603 ~aL~~L~~~~~~  614 (683)
                      ++|.+|+.+.+.
T Consensus       234 ~~L~~l~~~~~~  245 (252)
T 4hxt_A          234 RALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHTCBC
T ss_pred             HHHHHHHcCCCc
Confidence            999999986553

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.91  E-value=2.5e-22  Score=226.85  Aligned_cols=275  Identities=14%  Similarity=0.107  Sum_probs=237.7

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCC-hhhHHHHHHHHHhccc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRL-PNLQVNAVTTILNLSI  447 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d-~~~qe~A~~aL~nLs~  447 (683)
                      ...++.|+..|.++ +++.+..|++.|+.++.... .++..+++.|++|.|+.+|.+.    + +.++..|+++|.+++.
T Consensus        73 ~~~l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~  147 (528)
T 4b8j_A           73 LESLPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----DFPQLQFEAAWALTNIAS  147 (528)
T ss_dssp             --CHHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----TCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhC
Confidence            34688999999998 99999999999999976554 5788899999999999999987    6 8999999999999998


Q ss_pred             C-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhh-cCCChhHHHHHH
Q 048793          448 L-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDAL  524 (683)
Q Consensus       448 ~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~  524 (683)
                      + ++++..++.. |+++.|+.+|.++ +..++..|+++|.+|+... .++..+.. .|++++|+.+| .+.+..++..|+
T Consensus       148 ~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~  224 (528)
T 4b8j_A          148 GTSENTKVVIDH-GAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNAT  224 (528)
T ss_dssp             SCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHhC-CcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHH
Confidence            6 6778888887 9999999999987 7999999999999999764 46777777 79999999999 556788999999


Q ss_pred             HHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHH----HHHHcCchHHHHHHHhcCChHHHH
Q 048793          525 VAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTA----IVAAYNTIKKLCILLREGSDTSRE  599 (683)
Q Consensus       525 ~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e----~~~~~g~v~~Lv~lL~~~s~~~ke  599 (683)
                      ++|.+|+.+..+.......|+++.|+.+|.+. .+....++.+|.+++....    .....|+++.|+.+|...++.+++
T Consensus       225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~  304 (528)
T 4b8j_A          225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI  304 (528)
T ss_dssp             HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence            99999999876666667799999999999854 4568888999988875432    334458999999999999999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 048793          600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAALLRILRR  654 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~lL~~l~~  654 (683)
                      .|+++|.+|+.+..  ...+.+...|+++.|+.++.++ ++.+++.|.++|.++..
T Consensus       305 ~a~~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          305 PALRTVGNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHHHHHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            99999999998543  3445567899999999999999 99999999999999986

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.91  E-value=3e-23  Score=210.88  Aligned_cols=231  Identities=15%  Similarity=0.199  Sum_probs=204.4

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-Cch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~  450 (683)
                      ..+.++..|.++ +++.+..|++.|+++...+++++..+.+.|+||.|+.+|.++    ++.++..|+++|.|++. +++
T Consensus        13 ~~~~~~~~L~s~-~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           13 ELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             SHHHHHHHHHSS-CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS----CHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCHH
Confidence            456788999999 999999999999876665677899999999999999999998    89999999999999997 578


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ++..+++. |+++.|+.+|+++ +.+++..|+++|.+|+..++++ ..+.. .|+++.|+.+|.++++.++..|+++|.|
T Consensus        88 ~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~  164 (252)
T 4db8_A           88 QIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSN  164 (252)
T ss_dssp             HHHHHHHT-THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            88888887 9999999999998 7999999999999999999988 66766 8999999999999999999999999999


Q ss_pred             hcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC-CcHHH---HHHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          530 LAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG-GLTAI---VAAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       530 Ls~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~-~~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      |+.+. +++..+++.|+++.|+++|.+. ......|+.+|.+++ ++++.   ....|+++.|+.++.++++.+++.|++
T Consensus       165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~  244 (252)
T 4db8_A          165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE  244 (252)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence            99855 5777888999999999999864 455888999998887 34443   344588999999999999999999999


Q ss_pred             HHHHHHh
Q 048793          604 TLVTICR  610 (683)
Q Consensus       604 aL~~L~~  610 (683)
                      +|.+|+.
T Consensus       245 ~L~~l~~  251 (252)
T 4db8_A          245 ALEKLQS  251 (252)
T ss_dssp             HHHTTC-
T ss_pred             HHHHHhc
Confidence            9999875

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=210.44  Aligned_cols=195  Identities=13%  Similarity=0.118  Sum_probs=168.9

Q ss_pred             hhhHHHHHHHhccCCCH--HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          370 KMTASFLINKLATSQSM--EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~--~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ...++.||++|.++ ++  +.+..|++.|++++..++.+|..|.+.|+||.||.+|+++    +..+|+.|+++|.||+.
T Consensus         7 ~~~i~~lV~lL~s~-~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~----~~~vq~~Aa~aL~nLa~   81 (233)
T 3tt9_A            7 EMTLERAVSMLEAD-HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ----NEDVQRAVCGALRNLVF   81 (233)
T ss_dssp             CCCHHHHHHTCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHHHHT
T ss_pred             hccHHHHHHHhCCC-CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHh
Confidence            45789999999998 77  8899999999999999989999999999999999999998    99999999999999997


Q ss_pred             -CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc---C---------
Q 048793          448 -LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK---G---------  514 (683)
Q Consensus       448 -~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~---~---------  514 (683)
                       +++||..|++. |+|++|+++|+++.+.+++++|+++|++||..+++|..|+.  ++|++|+.++.   +         
T Consensus        82 ~~~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~  158 (233)
T 3tt9_A           82 EDNDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPK  158 (233)
T ss_dssp             TCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred             CCHHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccc
Confidence             57899999998 99999999998532799999999999999999999999986  57999999763   1         


Q ss_pred             ----CChhHHHHHHHHHHHhcCC-cchhHHHHhc-CchHHHHHHhccC-------chhHHHHHHHHHHcCC
Q 048793          515 ----GPTSSKRDALVAILNLAGD-RETVGRLVER-GIVEIVAEAMDVL-------PEESVTILEAVVKRGG  572 (683)
Q Consensus       515 ----~~~~~~~~A~~aL~nLs~~-~~n~~~iv~a-G~V~~Lv~lL~~~-------~~~~~~aL~~L~~l~~  572 (683)
                          .+..++.+|..+|+||+.. +++|..|.++ |+|+.|+.++...       ...++.|+++|.+++-
T Consensus       159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence                1457889999999999885 5899999986 7789999999731       2236677777766653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=5.5e-22  Score=200.57  Aligned_cols=238  Identities=17%  Similarity=0.194  Sum_probs=210.0

Q ss_pred             CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 048793          414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-  491 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-  491 (683)
                      |.||.|+.+|.++    ++.++..|+.+|.+++.+. +++..+++. |+++.|+.+|+++ +.+++..|+++|.+|+.. 
T Consensus         2 ~~i~~L~~~L~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~   75 (252)
T 4hxt_A            2 NDVEKLVKLLTST----DSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAARALANIASGP   75 (252)
T ss_dssp             CHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence            7899999999999    9999999999999998765 588888887 9999999999988 699999999999999988 


Q ss_pred             cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc-CCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHH
Q 048793          492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA-GDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVK  569 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~  569 (683)
                      ++++..+.. .|+++.|+.+|.++++.++..|+++|.||+ .+++++..+++.|+++.|+++|.+. ++....++.+|.+
T Consensus        76 ~~~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  154 (252)
T 4hxt_A           76 DEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN  154 (252)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            778888887 899999999999999999999999999999 5677899999999999999999864 4568889999999


Q ss_pred             cCCc-HH---HHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHH
Q 048793          570 RGGL-TA---IVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA  645 (683)
Q Consensus       570 l~~~-~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA  645 (683)
                      ++.. ++   .....|+++.|+.++.+.++..++.|+++|.++|.++  ......+.+.|+++.|+.++.++++++++.|
T Consensus       155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  232 (252)
T 4hxt_A          155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA  232 (252)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence            8853 33   3344588999999999999999999999999999843  3345567789999999999999999999999


Q ss_pred             HHHHHHHHhhhcccc
Q 048793          646 AALLRILRRWAAGLD  660 (683)
Q Consensus       646 ~~lL~~l~~~~~~~~  660 (683)
                      .++|.++........
T Consensus       233 ~~~L~~l~~~~~~~~  247 (252)
T 4hxt_A          233 QRALENIKSGGWLEH  247 (252)
T ss_dssp             HHHHHHHHHTCBCCC
T ss_pred             HHHHHHHHcCCCccc
Confidence            999999998665443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=7.8e-22  Score=223.13  Aligned_cols=278  Identities=15%  Similarity=0.113  Sum_probs=240.0

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.++.|+.+|.++.++..+..|+++|.+++.++++++..+++.|++|.|+.+|.++    ++.+++.|+++|.||+.+
T Consensus       128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~~~  203 (530)
T 1wa5_B          128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD  203 (530)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence            4688999999998753789999999999999998888999999999999999999998    999999999999999977


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                       ++++..+... |+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++++.++..|+++
T Consensus       204 ~~~~~~~~~~~-~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~  280 (530)
T 1wa5_B          204 STDYRDYVLQC-NAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWA  280 (530)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CccchHHHHHc-CcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHH
Confidence             4677777787 9999999999986 7999999999999999876 44445554 7999999999999999999999999


Q ss_pred             HHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      |.+|+... +++..+++.|+++.|+.+|.+. ......|+.+|.+++.. .+.   ....|.++.|+.+|...++.+++.
T Consensus       281 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~  360 (530)
T 1wa5_B          281 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE  360 (530)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHH
Confidence            99999865 4677788899999999999854 44578888999888743 332   233588999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      |+++|.+|+.++. .. .+.+...|+++.|+.++.++++++++.|.++|.++...
T Consensus       361 A~~aL~~l~~~~~-~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          361 ACWTISNITAGNT-EQ-IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHHHHHHHTTSCH-HH-HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH-HH-HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            9999999998543 23 33455789999999999999999999999999999775

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.89  E-value=3e-21  Score=212.40  Aligned_cols=276  Identities=14%  Similarity=0.128  Sum_probs=235.8

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc-
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE-  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~-  449 (683)
                      +.++.|++.|.++.++..+..|++.|.+++..+++++..+.+.|++|.|+.+|.++    ++.+++.|+++|.+++.+. 
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~~~  139 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE----FEDVQEQAVWALGNIAGDST  139 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccCCH
Confidence            78999999998764689999999999999998888888889999999999999998    9999999999999999874 


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc--chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH--AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~--~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      +++..+... |+++.|+.+|++..+.+++..|+++|.+|+...  ..+..+.  .|+++.|+.++.++++.++..|+++|
T Consensus       140 ~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~v~~~a~~~L  216 (450)
T 2jdq_A          140 MCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVSDTDVLADACWAL  216 (450)
T ss_dssp             HHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            567777777 999999999996447999999999999999764  2333333  68999999999999999999999999


Q ss_pred             HHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcH-HH---HHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLT-AI---VAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~-e~---~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .+|+.+. +++..+++.|+++.|+++|.+. .+....|+.+|.+++... +.   ....|.++.|+.++.+.++..++.|
T Consensus       217 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a  296 (450)
T 2jdq_A          217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA  296 (450)
T ss_dssp             HHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHH
Confidence            9999865 5777888999999999999854 455788888888887543 22   2334889999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +++|.+++.++..  ..+.+.+.|+++.|+.++.++++++|+.|.++|.++...
T Consensus       297 ~~~L~~l~~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          297 CWTISNITAGNRA--QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHHHHTTSCHH--HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999999985432  333455679999999999999999999999999999764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=5.9e-21  Score=215.94  Aligned_cols=279  Identities=17%  Similarity=0.162  Sum_probs=239.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..++++.|+.+|.++ +++++..|+++|.+++.+++.++..+.+.|++|.|+.+|.+.    +..++..|+++|.+|+.+
T Consensus       171 ~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          171 DADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----KPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----CHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC----CHHHHHHHHHHHHHHhCC
Confidence            468899999999998 999999999999999998888999999999999999999987    999999999999999976


Q ss_pred             c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      . ......... |+++.|+.+|.++ +.+++..|+++|.+|+.... ....+.. .|+++.|+.+|.++++.++..|+++
T Consensus       246 ~~~~~~~~~~~-~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~  322 (530)
T 1wa5_B          246 KKPQPDWSVVS-QALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRA  322 (530)
T ss_dssp             SSSCCCHHHHG-GGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHH-hHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHH
Confidence            5 444445555 8999999999988 79999999999999997654 4555655 7999999999999889999999999


Q ss_pred             HHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHHH---HHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAIV---AAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~~---~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      |.||+.+. .....+++.|+++.|+.+|.+. ......|+.+|.+++. +.+.+   ...|.++.|+.+|..+++.++..
T Consensus       323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  402 (530)
T 1wa5_B          323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE  402 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            99999865 4566778899999999999865 4557888889988874 44433   34588999999999999999999


Q ss_pred             HHHHHHHHHhcCCc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          601 AAATLVTICRKGGS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       601 A~~aL~~L~~~~~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      |+++|.+++..+..  .... .+.+.|+++.|+.++.+++++++..|.++|..+-...
T Consensus       403 a~~aL~~l~~~~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIR-YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHH-HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcHHHHH-HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999986543  3333 4557899999999999999999999999999887644

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.89  E-value=5.6e-21  Score=210.22  Aligned_cols=279  Identities=14%  Similarity=0.114  Sum_probs=237.1

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGP-DTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..+.++.|+.+|.++ +++.+..|++.|.+++.+++.++..+.+.|++|.|+.+|.+ .    +..++..|+++|.+++.
T Consensus       105 ~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~----~~~v~~~a~~~L~~l~~  179 (450)
T 2jdq_A          105 QAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN----RLTMTRNAVWALSNLCR  179 (450)
T ss_dssp             HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC----CHHHHHHHHHHHHHHHC
T ss_pred             hCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHHhC
Confidence            467899999999998 99999999999999999988899999999999999999995 5    88999999999999997


Q ss_pred             Cc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          448 LE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       448 ~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                      +.  ..+..++ . |+++.|+.+|.++ +.+++..++++|.+|+... ++...+.. .|+++.|+.+|.++++.++..|+
T Consensus       180 ~~~~~~~~~~~-~-~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~  255 (450)
T 2jdq_A          180 GKSPPPEFAKV-S-PCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPAL  255 (450)
T ss_dssp             CSSSCCCGGGT-G-GGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCCCCCCHHHH-H-HHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHH
Confidence            54  3333333 4 8999999999988 7999999999999999865 45556666 79999999999988899999999


Q ss_pred             HHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHHH---HHcCchHHHHHHHhcCChHHH
Q 048793          525 VAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAIV---AAYNTIKKLCILLREGSDTSR  598 (683)
Q Consensus       525 ~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~~---~~~g~v~~Lv~lL~~~s~~~k  598 (683)
                      ++|.+|+.+.++ ...+++.|+++.|+.+|.+. ......|+.+|.+++. +.+..   ...|.++.|+.+|..+++.++
T Consensus       256 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~  335 (450)
T 2jdq_A          256 RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR  335 (450)
T ss_dssp             HHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            999999987654 55678899999999999864 4458889999988874 44433   334889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793          599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      ..|+++|.+++.++....... +...|+++.|+.++.++++++++.|.+.|.++....+
T Consensus       336 ~~a~~~L~~l~~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          336 KEAAWAITNATSGGSAEQIKY-LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHH-HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHH-HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            999999999998643333333 4467999999999999999999999999999877543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=8e-21  Score=213.63  Aligned_cols=282  Identities=12%  Similarity=0.082  Sum_probs=240.4

Q ss_pred             hhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH
Q 048793          364 AALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL  443 (683)
Q Consensus       364 ~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~  443 (683)
                      ..+. ..|.++.|+++|.++ +++.+..|++.|.+++.+++.++..+.+.|++|.|+.+|.++    +..++..++.+|.
T Consensus        95 ~~i~-~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~~~~~~~L~  168 (529)
T 1jdh_A           95 LAIF-KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQ  168 (529)
T ss_dssp             HHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC----CHHHHHHHHHHHH
T ss_pred             HHHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence            3343 458999999999998 999999999999999999877899999999999999999998    8999999999999


Q ss_pred             hcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793          444 NLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       444 nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                      +++.+ ++++..+... |+++.|+.+|+++.....+..++.+|.+|+..++++..+.. .|+++.|+.++.++++..+..
T Consensus       169 ~la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~  246 (529)
T 1jdh_A          169 ILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHH
Confidence            99975 6888888887 99999999999886677778899999999999999999988 899999999999998899999


Q ss_pred             HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HH---HHHHcCchHHHHHHHhcC--Ch
Q 048793          523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TA---IVAAYNTIKKLCILLREG--SD  595 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e---~~~~~g~v~~Lv~lL~~~--s~  595 (683)
                      |+++|.||+.+.....  ...|+++.|+++|.+. ++....++.+|.+++.. .+   .+...|+++.|+.+|...  ++
T Consensus       247 a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~  324 (529)
T 1jdh_A          247 CLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE  324 (529)
T ss_dssp             HHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHH
Confidence            9999999998764322  2358999999999754 45688888899888753 33   334458899999999763  37


Q ss_pred             HHHHHHHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCC-HHHHHHHHHHHHHHHhh
Q 048793          596 TSRESAAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGT-ARARRKAAALLRILRRW  655 (683)
Q Consensus       596 ~~ke~A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~-~~~k~kA~~lL~~l~~~  655 (683)
                      ..++.|+++|.+|+.++++ ...+..+...|+++.|+.++.++. +.+++.|.++|.++...
T Consensus       325 ~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            8999999999999986544 234555778899999999999886 69999999999998763

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=1.6e-21  Score=219.26  Aligned_cols=277  Identities=14%  Similarity=0.103  Sum_probs=234.3

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.++.|++.|.++.+++.+..|+..|++++.+. +++..+.+.|+||.|+.+|.++    ++.++..|+++|.||+.+
T Consensus        57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~  131 (529)
T 1jdh_A           57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence            45789999999976437999999999999998865 5999999999999999999998    999999999999999987


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV  525 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~  525 (683)
                       ++.+..+.+. |+++.|+++|+++ +.+.+..++.+|.+++.. ++++..++. .|+++.|+.+|++++.. ....++.
T Consensus       132 ~~~~~~~i~~~-g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~  208 (529)
T 1jdh_A          132 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR  208 (529)
T ss_dssp             CTTHHHHHHHH-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             CcchHHHHHHc-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHH
Confidence             4567777777 9999999999988 799999999999999975 678888888 79999999999887654 5678899


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      +|.||+.+++++..+++.|+++.|++++.+. .+....++.+|.+++...... ...+.++.|++++...++..++.|++
T Consensus       209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  288 (529)
T 1jdh_A          209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  288 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence            9999999999999999999999999999864 445777788887766432111 11256899999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHhh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESG--TARARRKAAALLRILRRW  655 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~lL~~l~~~  655 (683)
                      +|.+|+.++.  .....+.+.|+++.|+.++.+.  ++.+++.|..+|.++...
T Consensus       289 ~L~~L~~~~~--~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          289 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHTTTCH--HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCH--HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            9999998643  2455577889999999998763  479999999999999653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.87  E-value=3.6e-23  Score=197.56  Aligned_cols=168  Identities=21%  Similarity=0.303  Sum_probs=107.0

Q ss_pred             cchhhHHHHHHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHH
Q 048793          144 RLSQDVEDVVVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR-NSSACKEEIESLEE  222 (683)
Q Consensus       144 ~~s~ev~e~v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~-~~~~~~~E~~~l~~  222 (683)
                      ...++|..+|..++++.|..+++.|+ .++.++..++..++....+.          -...+.-. ....       +++
T Consensus        10 ~~~~~I~~~l~~aKk~~w~~~e~~r~-~~~~~l~~~~~~l~~~~~~~----------~l~~~~~~~~~~~-------~~~   71 (179)
T 2f42_A           10 NFGDDIPSALRIAKKKRWNSIEEKRI-SQENELHAYLSKLILAEKER----------ELDDRVKQSDDSQ-------NGG   71 (179)
T ss_dssp             ------------CCCTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----------HTTC-------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----------HHHHHHhhccchh-------hhH
Confidence            46789999999999999999888887 67888999998888653222          11111100 0011       111


Q ss_pred             HHhhhcccccHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCccccchhh
Q 048793          223 EIQNQTDQKSKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQS  302 (683)
Q Consensus       223 e~~~~~~~~~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~  302 (683)
                      +..+.. ...-..+.++..+....+.              ..    ....+|++|+||||+++|+|||+++|||||||.|
T Consensus        72 ~~~~~~-~~~~~~i~~~~~l~~~~~~--------------~~----~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~  132 (179)
T 2f42_A           72 DISKMK-SKHDKYLMDMDELFSQVDE--------------KR----KKREIPDYLCGKISFELMREPCITPSGITYDRKD  132 (179)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHH--------------GG----GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhh--------------hc----cccCCcHhhcccCccccCCCCeECCCCCEECHHH
Confidence            111111 1112234455444432221              11    1357899999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 048793          303 ISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD  348 (683)
Q Consensus       303 I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~  348 (683)
                      |++|+..++.+||.|++++...+++||..|+++|+.|+..|||...
T Consensus       133 I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~d  178 (179)
T 2f42_A          133 IEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVED  178 (179)
T ss_dssp             HHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC-
T ss_pred             HHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcCC
Confidence            9999987555899999999999999999999999999999998653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=3e-21  Score=223.80  Aligned_cols=276  Identities=14%  Similarity=0.106  Sum_probs=234.9

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.++.|++.|.++.+++.+..|+..|++++.+. +++..+.+.|+||.|+.+|.++    ++.++..|+.+|.||+.+
T Consensus        54 ~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nL~~~  128 (644)
T 2z6h_A           54 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLH  128 (644)
T ss_dssp             CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhC
Confidence            34789999999986547999999999999999875 4999999999999999999998    999999999999999976


Q ss_pred             c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHH
Q 048793          449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALV  525 (683)
Q Consensus       449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~  525 (683)
                      . ..+..+.+. |+++.|+.+|+++ +.+.+..++.+|.+|+. .++++..++. .|+++.|+.+|++++ ...+..++.
T Consensus       129 ~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~  205 (644)
T 2z6h_A          129 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR  205 (644)
T ss_dssp             STTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             cchhHHHHHHC-CChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHH
Confidence            4 556677777 9999999999988 68888888999999996 6789999988 799999999998875 457789999


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      +|+||+.+++++..++++|+++.|+.++.+. ......++.+|.+++...... ...+.++.|+++|...++.+++.|++
T Consensus       206 ~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~  285 (644)
T 2z6h_A          206 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  285 (644)
T ss_dssp             HHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence            9999999999999999999999999999864 445777888888876432110 11156899999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELMESG-T-ARARRKAAALLRILRR  654 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~-~~~k~kA~~lL~~l~~  654 (683)
                      +|.+|+.++.  ..+..+.+.|+++.|+.++.+. + +.+++.|.++|.++..
T Consensus       286 aL~~L~~~~~--~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          286 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCH--HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            9999998543  3355567789999999998873 3 7999999999999964

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.87  E-value=2.3e-21  Score=196.94  Aligned_cols=232  Identities=15%  Similarity=0.162  Sum_probs=203.4

Q ss_pred             CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhc-ccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-C
Q 048793          414 GAIALLARHLGPDTASRLPNLQVNAVTTILNL-SILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-V  491 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nL-s~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~  491 (683)
                      ...+.++.+|.++    |++++..|+.+|.++ +.+++++..+++. |+++.|+.+|+++ +.+.+..|+++|.+|+. .
T Consensus        12 ~~~~~~~~~L~s~----~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~   85 (252)
T 4db8_A           12 SELPQMTQQLNSD----DMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG   85 (252)
T ss_dssp             CSHHHHHHHHHSS----CSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHcCC----CHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC
Confidence            5689999999999    999999999999775 4566778888887 9999999999988 69999999999999998 5


Q ss_pred             cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchh-HHHHhcCchHHHHHHhccC-chhHHHHHHHHHH
Q 048793          492 HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETV-GRLVERGIVEIVAEAMDVL-PEESVTILEAVVK  569 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~  569 (683)
                      ++++..+.. .|+++.|+.+|.++++.+++.|+++|.||+.+++++ ..+++.|+++.|+++|.+. ......++.+|.+
T Consensus        86 ~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~  164 (252)
T 4db8_A           86 NEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN  164 (252)
T ss_dssp             HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            778888888 899999999999999999999999999999999988 8889999999999999864 4568889999999


Q ss_pred             cCCc-HHH---HHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHH
Q 048793          570 RGGL-TAI---VAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKA  645 (683)
Q Consensus       570 l~~~-~e~---~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA  645 (683)
                      ++.. ++.   ....|+++.|+.++...++..++.|+++|.+|+.+++  .....+.+.|+++.|+.++.++++++++.|
T Consensus       165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A  242 (252)
T 4db8_A          165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSHENEKIQKEA  242 (252)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred             HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence            8853 333   3446899999999999999999999999999997543  345557788999999999999999999999


Q ss_pred             HHHHHHHHh
Q 048793          646 AALLRILRR  654 (683)
Q Consensus       646 ~~lL~~l~~  654 (683)
                      .++|.++.+
T Consensus       243 ~~~L~~l~~  251 (252)
T 4db8_A          243 QEALEKLQS  251 (252)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHHhc
Confidence            999998754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=5e-21  Score=221.92  Aligned_cols=274  Identities=15%  Similarity=0.108  Sum_probs=236.0

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|.++.|+.+|.++ ++.++..|+..|.+++.+.. ++..+... |+++.|+.+|.++   .++.++..|+.+|.+|+.
T Consensus        12 ~~g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~   86 (644)
T 2z6h_A           12 ATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH   86 (644)
T ss_dssp             CTTTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHTT
T ss_pred             hhchHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcC---CCHHHHHHHHHHHHHHhc
Confidence            567899999999988 99999999999999999875 77777754 9999999999753   178999999999999999


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      +++++..+.+. |+++.|+.+|+++ +..++..|+++|.+|+... ..+..+.. .|+++.|+.+|.+++.+.+..++.+
T Consensus        87 ~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~  163 (644)
T 2z6h_A           87 HREGLLAIFKS-GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDC  163 (644)
T ss_dssp             SHHHHHHHHTT-THHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             ChhhHHHHHHc-CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHH
Confidence            98999999998 9999999999988 7999999999999999875 45666666 8999999999999888888888999


Q ss_pred             HHHhcC-CcchhHHHHhcCchHHHHHHhccCc--hhHHHHHHHHHHcCCcHH---HHHHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAG-DRETVGRLVERGIVEIVAEAMDVLP--EESVTILEAVVKRGGLTA---IVAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~-~~~n~~~iv~aG~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e---~~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      |.+|+. +++++..+++.|+++.|+++|.+..  .....++.+|.+++.+++   .+...|+++.|+.++..++...+++
T Consensus       164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~  243 (644)
T 2z6h_A          164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN  243 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            999996 6789999999999999999998542  335667777777775544   3445588999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      |+++|.+||......     ....|+++.|+.++.++++.+++.|.++|.+|...
T Consensus       244 a~~~L~nL~~~~~~~-----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          244 CLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             HHHHHHHHGGGCTTC-----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcchhh-----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999999999865432     11237899999999999999999999999999774

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=1.8e-20  Score=185.07  Aligned_cols=196  Identities=15%  Similarity=0.191  Sum_probs=173.7

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-  447 (683)
                      ..+..+.|+.+|.++ +++.+..|++.|.+++..+++++..+.+.|++|.|+.+|.++    ++.+++.|+++|.|++. 
T Consensus        10 ~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A           10 HGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASG   84 (210)
T ss_dssp             ---CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTS
T ss_pred             ccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC
Confidence            345678899999998 999999999999999988888999999999999999999998    99999999999999995 


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      +++++..+++. |+++.|+.+|+++ +..++..|+++|.+|+...+ .+..+.. .|+++.|+++|.++++.+++.|+++
T Consensus        85 ~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           85 GNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHC-CCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            56778888887 9999999999998 79999999999999997554 5556666 8999999999999999999999999


Q ss_pred             HHHhcCC-cchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793          527 ILNLAGD-RETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG  572 (683)
Q Consensus       527 L~nLs~~-~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~  572 (683)
                      |.||+.+ ++++..+++.|+++.|++++.+. .+..+.|+.+|.+++.
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9999997 66888889999999999999854 4558888888887764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=2.8e-21  Score=194.22  Aligned_cols=189  Identities=12%  Similarity=0.101  Sum_probs=163.7

Q ss_pred             cHHHHHHhhCCCCCCCCh--hhHHHHHHHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-
Q 048793          415 AIALLARHLGPDTASRLP--NLQVNAVTTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-  490 (683)
Q Consensus       415 ~Ip~Lv~lL~s~~~~~d~--~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-  490 (683)
                      .||.||.+|.++    ++  .+|..|+++|.+|+. +++++..|.+. |+||+||++|+++ +.++++.|+++|++|+. 
T Consensus         9 ~i~~lV~lL~s~----~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            9 TLERAVSMLEAD----HMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQ-NEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CHHHHHHTCCSS----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHhCCC----CchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC
Confidence            589999999998    77  899999999999995 57889999998 9999999999998 79999999999999998 


Q ss_pred             CcchhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc---c-----------
Q 048793          491 VHAHRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD---V-----------  555 (683)
Q Consensus       491 ~~~~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~---~-----------  555 (683)
                      +++++..|++ .|+||+||++|+ +++...++.|+.+|+||+.+++|+..+++. +|++|++++.   .           
T Consensus        83 ~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           83 DNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence            5789999998 899999999998 468889999999999999999999999874 6999998763   0           


Q ss_pred             ---CchhHHHHHHHHHHcCC-cHHHHHHc----CchHHHHHHHhcC------ChHHHHHHHHHHHHHHhc
Q 048793          556 ---LPEESVTILEAVVKRGG-LTAIVAAY----NTIKKLCILLREG------SDTSRESAAATLVTICRK  611 (683)
Q Consensus       556 ---~~~~~~~aL~~L~~l~~-~~e~~~~~----g~v~~Lv~lL~~~------s~~~ke~A~~aL~~L~~~  611 (683)
                         +.+..+.|.+.|.+++. +++.+..+    |.++.|+.+++.+      +.+.+|+|+.+|++||..
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence               12457889999999875 45655443    5689999999853      568899999999999974

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.6e-21  Score=216.88  Aligned_cols=291  Identities=14%  Similarity=0.150  Sum_probs=234.5

Q ss_pred             chhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-----------------------------------
Q 048793          361 TNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-----------------------------------  405 (683)
Q Consensus       361 ~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-----------------------------------  405 (683)
                      ..|..+....+.+..|+.+++...+......++..|.|++...+.                                   
T Consensus       366 ~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v  445 (778)
T 3opb_A          366 SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDI  445 (778)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHH
Confidence            344556667788999999998522677888999999998874331                                   


Q ss_pred             ---hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCH--HHHHH
Q 048793          406 ---SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATW--EAKGN  480 (683)
Q Consensus       406 ---nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~--~~~~~  480 (683)
                         ++..+.++|+||.|+.+++++    ++.+++.|+++|.||+.+.++|..+++. |++++|+.+|.++...  ..+.+
T Consensus       446 ~~~~~~~l~eaGvIp~Lv~Ll~S~----s~~~re~A~~aL~nLS~d~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~  520 (778)
T 3opb_A          446 LLFNEKYILRTELISFLKREMHNL----SPNCKQQVVRIIYNITRSKNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRIL  520 (778)
T ss_dssp             HHHHHHHTTTTTHHHHHHHHGGGS----CHHHHHHHHHHHHHHHTSGGGHHHHHHT-THHHHHHHHTTCC---CCHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHcCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHH
Confidence               577888999999999999998    9999999999999999999999999998 9999999999988322  28999


Q ss_pred             HHHHHHHhhcCcchhhHHhh--hcccHHHHHHhhcCC-Ch-------------hHHHHHHHHHHHhcCCcch-----hHH
Q 048793          481 AAATIFSLSGVHAHRKTLGR--KTRVVKGLMDLVKGG-PT-------------SSKRDALVAILNLAGDRET-----VGR  539 (683)
Q Consensus       481 Aa~~L~~Ls~~~~~~~~i~~--~~G~i~~Lv~lL~~~-~~-------------~~~~~A~~aL~nLs~~~~n-----~~~  539 (683)
                      |+.+|.+|....+....+..  ..|+|++|+.||..+ ..             -.+..|+.||.||+..++|     +.+
T Consensus       521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~  600 (778)
T 3opb_A          521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH  600 (778)
T ss_dssp             HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            99999999976665555532  139999999999832 11             1267999999999998743     788


Q ss_pred             HHhc-CchHHHHHHhccCc-hhHHHHHHHHHHcCCcHHHHH-Hc---------CchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793          540 LVER-GIVEIVAEAMDVLP-EESVTILEAVVKRGGLTAIVA-AY---------NTIKKLCILLREGSDTSRESAAATLVT  607 (683)
Q Consensus       540 iv~a-G~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~e~~~-~~---------g~v~~Lv~lL~~~s~~~ke~A~~aL~~  607 (683)
                      +++. |+++.|.++|.++. .....|+..+++++.+++++. ..         +.++.|+.++..++..+|+.|+++|.+
T Consensus       601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn  680 (778)
T 3opb_A          601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN  680 (778)
T ss_dssp             HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9995 99999999998654 447778888888887777541 22         236789999999999999999999999


Q ss_pred             HHhcCCchHHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHHHhhhc
Q 048793          608 ICRKGGSEMVADIAAVPGIERVIWELMES--GTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~--~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      ++...+ ...+.++...++++.|+.++++  +++.++..+..++.+|..+..
T Consensus       681 Lts~~~-~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          681 IATTIP-LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             HHHHCH-HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred             hcCCCh-HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence            976443 3445555555899999999999  899999999999999998553

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.84  E-value=3.9e-20  Score=218.81  Aligned_cols=276  Identities=14%  Similarity=0.110  Sum_probs=232.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.++.|++.|.++.+++.+..|+..|++++... +++..+.+.|+||.|+.+|+++    ++.++..|+++|.||+.+
T Consensus       190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~----~~~v~~~A~~aL~nLa~~  264 (780)
T 2z6g_A          190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSP----VDSVLFHAITTLHNLLLH  264 (780)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHhCC
Confidence            34789999999976548999999999999998864 5899999999999999999998    999999999999999987


Q ss_pred             c-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CcchhhHHhhhcccHHHHHHhhcCCChh-HHHHHHH
Q 048793          449 E-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG-VHAHRKTLGRKTRVVKGLMDLVKGGPTS-SKRDALV  525 (683)
Q Consensus       449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~-~~~~~~~i~~~~G~i~~Lv~lL~~~~~~-~~~~A~~  525 (683)
                      . +.+..+.+. |+++.|+.+|+++ +..++..++.+|.+|+. +++++..++. .|+++.|+.+|++++.. ....++.
T Consensus       265 ~~~~~~~v~~~-g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~  341 (780)
T 2z6g_A          265 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR  341 (780)
T ss_dssp             STTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ChhhHHHHHHc-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            4 556666676 9999999999987 78999999999999996 4678888888 79999999999987655 5578899


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHH-HHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIV-AAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~-~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      +|.+|+.+.+++..++++|+++.|+.+|.+. ......++.+|.+++...... ...+.++.|+.+|...++.+++.|++
T Consensus       342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~  421 (780)
T 2z6g_A          342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  421 (780)
T ss_dssp             HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence            9999999999999999999999999999864 345777788887765332110 11256889999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELMES-GT-ARARRKAAALLRILRR  654 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~-~~~k~kA~~lL~~l~~  654 (683)
                      +|.+|+.+..  ..+..+.+.|+++.|+.++.+ ++ +.+++.|.++|.++..
T Consensus       422 aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          422 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             HHHHHTSSCH--HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCCH--HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            9999998643  345567788999999998876 33 4999999999999865

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.84  E-value=2.4e-20  Score=193.65  Aligned_cols=235  Identities=19%  Similarity=0.271  Sum_probs=149.2

Q ss_pred             ChhHhhhHHHHHHHHHHHHHHHHHhcccchH--------HHHHhhHHHHHHHHHHHHHHHHHHhcCCCccccchhhHHHH
Q 048793           81 SPPTVLCFEEMYIVLQRMKTLIEDCYNGSKM--------WLLMQIETAANNFHELTIDLSTLLDIMPLQELRLSQDVEDV  152 (683)
Q Consensus        81 ~~~~~~~l~~L~~~l~~a~~ll~~c~~~skl--------yl~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~s~ev~e~  152 (683)
                      ...+...+-..+..+.+....+.++....++        |.+..+..-..+++++...+.+++..-|-....+...+...
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~  116 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA  116 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence            4455666666677777777777776654443        66677777778999999999999998875544555666666


Q ss_pred             HHHHHHHHhhhhhccCCCchhHHHHHHHHHHHhhhhhcCCCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhhcccc
Q 048793          153 VVLIKKQCSKRTKGALVDSKDDKLRLQVLTTLDQIKKEIVPDHSILKQMFESLGLR-NSSACKEEIESLEEEIQNQTDQK  231 (683)
Q Consensus       153 v~~~~~q~~~~~~~~~~d~~~~~l~~~v~~~l~~~~~~~~~d~~~l~~~~~~l~~~-~~~~~~~E~~~l~~e~~~~~~~~  231 (683)
                      +...+...|...+..+. +.+..+...+..++....+      +.++..-..+.+. +...+...+..+..+.     +.
T Consensus       117 ~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~l~~~~~~------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~  184 (281)
T 2c2l_A          117 LRIAKKKRWNSIEERRI-HQESELHSYLTRLIAAERE------RELEECQRNHEGHEDDGHIRAQQACIEAKH-----DK  184 (281)
T ss_dssp             HHHHHHHHHHHHHHTCC-CCCCHHHHHHHHHHHHHHH------HHHTTTSGGGTTTSCHHHHTHHHHHHHHHH-----HH
T ss_pred             HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH------HHHHHHHhhhccccchhhhhhHHHHHHHHH-----HH
Confidence            66665554433333333 4455555444443321110      1222222233332 1222222221111110     01


Q ss_pred             cHHHHHHHHHHHHhhhhhccccccCCcchHHHhhcccCCCCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCC
Q 048793          232 SKHFAAALIGLVRYTKCVLFGASVQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGH  311 (683)
Q Consensus       232 ~~~~~~~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~  311 (683)
                      .......+           |......          .....+|++|+||||+++|+|||+++|||||||.||++|+..++
T Consensus       185 ~~~~a~~~-----------f~~a~~~----------~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~  243 (281)
T 2c2l_A          185 YMADMDEL-----------FSQVDEK----------RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG  243 (281)
T ss_dssp             HHHHHHHH-----------HHHSSCT----------TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC
T ss_pred             HHHHHHHH-----------HHhhhcc----------ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC
Confidence            11122222           2211110          11357899999999999999999999999999999999999877


Q ss_pred             CCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 048793          312 NTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD  348 (683)
Q Consensus       312 ~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~  348 (683)
                      .+||.|+++++..+++||..|+++|++|+.+|+|...
T Consensus       244 ~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~~  280 (281)
T 2c2l_A          244 HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED  280 (281)
T ss_dssp             SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSC
T ss_pred             CCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCCC
Confidence            7799999999999999999999999999999998654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.84  E-value=2.5e-19  Score=211.85  Aligned_cols=280  Identities=13%  Similarity=0.093  Sum_probs=237.5

Q ss_pred             hHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHh
Q 048793          365 ALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILN  444 (683)
Q Consensus       365 ~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~n  444 (683)
                      .+. ..|.++.|+++|+++ ++..+..|+++|.+++...+.++..+.+.|++|.|+.+|.+.    +..++..|+.+|.+
T Consensus       229 ~i~-~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~----~~~v~~~a~~aL~~  302 (780)
T 2z6g_A          229 AIF-KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT----NVKFLAITTDCLQI  302 (780)
T ss_dssp             HHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC----CHHHHHHHHHHHHH
T ss_pred             HHH-HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHH
Confidence            444 458999999999998 999999999999999999888899999999999999999998    89999999999999


Q ss_pred             ccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          445 LSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       445 Ls~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      |+. +++++..++.. |+++.|+.+|+++.....+..++.+|.+|+....++..+.. .|+++.|+.+|.+++...+..|
T Consensus       303 La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a  380 (780)
T 2z6g_A          303 LAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNC  380 (780)
T ss_dssp             HHTTCHHHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHH
T ss_pred             HhcCChHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHH
Confidence            986 57889888887 99999999999885566777899999999999999999988 8999999999999888999999


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHH---HHHcCchHHHHHHHhc-CC-hH
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAI---VAAYNTIKKLCILLRE-GS-DT  596 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~---~~~~g~v~~Lv~lL~~-~s-~~  596 (683)
                      +++|.+|+......  ....|+++.|+++|.+. .+....|+.+|.+++.. .+.   +...|+++.|+.+|.. ++ ..
T Consensus       381 ~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~  458 (780)
T 2z6g_A          381 LWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED  458 (780)
T ss_dssp             HHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHH
Confidence            99999999865432  23368899999999854 45578888888888754 333   3345889999999976 33 48


Q ss_pred             HHHHHHHHHHHHHhcCCch-HHHHHHhcCCcHHHHHHHhhcCCH-HHHHHHHHHHHHHHh
Q 048793          597 SRESAAATLVTICRKGGSE-MVADIAAVPGIERVIWELMESGTA-RARRKAAALLRILRR  654 (683)
Q Consensus       597 ~ke~A~~aL~~L~~~~~~~-~~~~~~~~~G~~~~L~~Ll~~~~~-~~k~kA~~lL~~l~~  654 (683)
                      +++.|+++|.+|+...++. ..+..+...|+++.|+.++.+++. .+++.|.++|.++..
T Consensus       459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence            9999999999998765442 234456778999999999998864 999999999999985

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.81  E-value=5.6e-19  Score=174.28  Aligned_cols=192  Identities=13%  Similarity=0.155  Sum_probs=166.5

Q ss_pred             HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793          412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG  490 (683)
Q Consensus       412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~  490 (683)
                      ..|..|.|+.+|.++    |+.++..|+++|.+++. +++++..+.+. |+++.|+.+|+++ +++++..|+++|.+|+.
T Consensus        10 ~~~~~~~l~~LL~s~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A           10 HGSELPQMVQQLNSP----DQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIAS   83 (210)
T ss_dssp             ---CHHHHHHHTTCS----CHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             ccchhHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence            458999999999999    99999999999999995 56778888887 9999999999988 79999999999999995


Q ss_pred             -CcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793          491 -VHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV  567 (683)
Q Consensus       491 -~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L  567 (683)
                       .++++..+.. .|+++.|+.+|.++++.+++.|+++|.||+.+. +++..+++.|+++.|+++|.++ .+....|+.+|
T Consensus        84 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           84 GGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             SCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence             5567888887 899999999999999999999999999999754 4667888999999999999864 45588888888


Q ss_pred             HHcCCc-HHHH---HHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          568 VKRGGL-TAIV---AAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       568 ~~l~~~-~e~~---~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      .+++.. ++..   ...|+++.|+.++.+.++.+++.|+++|.+|+.
T Consensus       163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            887754 4433   344889999999999999999999999999985

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.79  E-value=3.2e-20  Score=156.86  Aligned_cols=73  Identities=32%  Similarity=0.484  Sum_probs=69.0

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR  344 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  344 (683)
                      ..+|++|+||||+++|+|||+++|||||||.||++|+.. +.+||.|++++...+++||..|+++|+.|+.+|+
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999999985 6799999999999999999999999999998874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.79  E-value=4.9e-20  Score=160.41  Aligned_cols=73  Identities=33%  Similarity=0.496  Sum_probs=69.4

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQR  344 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  344 (683)
                      ..+|++|+||||+++|+|||+++|||||||.||++|+.. +.+||.|++++...+++||..|+++|+.|+.+|+
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999999984 7899999999999999999999999999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.79  E-value=7.8e-20  Score=158.50  Aligned_cols=75  Identities=32%  Similarity=0.431  Sum_probs=70.9

Q ss_pred             CCCCCcccccccccCCCCceecCCc-cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATG-QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIP  346 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g-~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  346 (683)
                      ..+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++...+++||..|+++|+.|+.++++.
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            4689999999999999999999999 99999999999986 679999999999999999999999999999998764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.76  E-value=1.2e-17  Score=174.44  Aligned_cols=181  Identities=19%  Similarity=0.125  Sum_probs=156.6

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccCcH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEGAL  462 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G~I  462 (683)
                      +.+.+..|+..|..++... +|...+.+.|++|.|+. +|.++    ++.+++.|+++|.|++.++ ..+..+++. |++
T Consensus        53 ~~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l  126 (296)
T 1xqr_A           53 DQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG----AAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GAL  126 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THH
T ss_pred             CHHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCH
Confidence            4578899999999999855 48888999999999999 99998    9999999999999999764 567788887 999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCC-cchhHHH
Q 048793          463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGD-RETVGRL  540 (683)
Q Consensus       463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~i  540 (683)
                      ++|+.+|+++.+..+++.|+++|.+|+.+.. ....+.. .|+++.|+.+|++++..+++.|+++|.||+.+ ++.+..+
T Consensus       127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v  205 (296)
T 1xqr_A          127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL  205 (296)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            9999999975468999999999999997654 4556666 79999999999999999999999999999875 5688999


Q ss_pred             HhcCchHHHHHHhccC-chhHHHHHHHHHHcCC
Q 048793          541 VERGIVEIVAEAMDVL-PEESVTILEAVVKRGG  572 (683)
Q Consensus       541 v~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~  572 (683)
                      +++|++++|+.+|... .+..+.++..|.++..
T Consensus       206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence            9999999999999853 5567777777776553

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.75  E-value=4.6e-17  Score=186.60  Aligned_cols=273  Identities=11%  Similarity=0.100  Sum_probs=214.5

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCC-CCCCCChhhHHHHHHHHHhcccCc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGP-DTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s-~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .++.++++|.++ +.+.+..|++.|..++.+. +.|..+++. |+++.|+.+++. .    +..+...++.+|.||+.+.
T Consensus       335 La~~~~~~L~~~-~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~----d~s~~Ygal~IL~NLt~~~  408 (778)
T 3opb_A          335 LSEIFINAISRR-IVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQK----MTHCLYGLLVIMANLSTLP  408 (778)
T ss_dssp             HHHHHHHHTTTC-CHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcC-CccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhcCCC
Confidence            456788888887 7777999999999998865 588888875 789999999996 5    7788999999999997531


Q ss_pred             h---------------------------------------hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 048793          450 A---------------------------------------NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSG  490 (683)
Q Consensus       450 ~---------------------------------------~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~  490 (683)
                      +                                       ++..+.+. |+|+.|+.+++++ ++.+++.|+++|.+||.
T Consensus       409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea-GvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~  486 (778)
T 3opb_A          409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT-ELISFLKREMHNL-SPNCKQQVVRIIYNITR  486 (778)
T ss_dssp             CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-THHHHHHHHGGGS-CHHHHHHHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-cCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            1                                       45566677 9999999999998 79999999999999999


Q ss_pred             CcchhhHHhhhcccHHHHHHhhcCCChh---HHHHHHHHHHHhcCCcchhHHHH--h-cCchHHHHHHhcc--Cch----
Q 048793          491 VHAHRKTLGRKTRVVKGLMDLVKGGPTS---SKRDALVAILNLAGDRETVGRLV--E-RGIVEIVAEAMDV--LPE----  558 (683)
Q Consensus       491 ~~~~~~~i~~~~G~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv--~-aG~V~~Lv~lL~~--~~~----  558 (683)
                      ..++|..++. .|++++|+.+|.+++..   ++..|+.||.+|....+....+-  . .|+|++|+++|..  +..    
T Consensus       487 d~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l  565 (778)
T 3opb_A          487 SKNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL  565 (778)
T ss_dssp             SGGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC-
T ss_pred             CHHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccc
Confidence            9999999999 89999999999988644   78999999999987665444331  1 3999999999983  211    


Q ss_pred             --------h-HHHHHHHHHHcCCcH-----HH---HHH-cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHH
Q 048793          559 --------E-SVTILEAVVKRGGLT-----AI---VAA-YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADI  620 (683)
Q Consensus       559 --------~-~~~aL~~L~~l~~~~-----e~---~~~-~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~  620 (683)
                              . ..+|+.+|.|+++.+     +.   +.. .|+++.|..+|.+.+...|+.|++++.+|+.+... ....+
T Consensus       566 ~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~-i~~k~  644 (778)
T 3opb_A          566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT-IAAKF  644 (778)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG-TGGGT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH-HHHHH
Confidence                    1 446666666655432     22   333 37899999999999999999999999999974321 10122


Q ss_pred             HhcC-----CcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          621 AAVP-----GIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       621 ~~~~-----G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ....     +-+++|+.|+.+++.++|+.|+++|.++..
T Consensus       645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            2111     137899999999999999999999999953

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.71  E-value=6.1e-18  Score=140.63  Aligned_cols=75  Identities=57%  Similarity=1.104  Sum_probs=71.4

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI  345 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  345 (683)
                      ..+|++|.||||+++|.|||+++|||+||+.||++|+..|+.+||.|++++...++.||..|+++|+.|..+|++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999999999999998788999999999988999999999999999999886

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.68  E-value=6e-16  Score=161.58  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=144.0

Q ss_pred             hhhhHHHHHH-HhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLIN-KLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~-~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|+++.|+. +|.++ +++++..|+++|.+++.+++.+|..+++.|++|.|+.+|.+..   +..+++.|+++|.|++.
T Consensus        79 ~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~---~~~v~~~A~~ALsnl~~  154 (296)
T 1xqr_A           79 QLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA---CDTVRVKALFAISCLVR  154 (296)
T ss_dssp             HTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHc
Confidence            4678999999 99998 9999999999999999999999999999999999999998531   78899999999999997


Q ss_pred             Cc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793          448 LE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALV  525 (683)
Q Consensus       448 ~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~  525 (683)
                      +. .....+... |+++.|+.+|+++ +..++..|+++|.+|+.. ++.+..+++ .|++++|+.+|.+++..+++.|+.
T Consensus       155 ~~~~~~~~~~~~-ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~d~~v~~~al~  231 (296)
T 1xqr_A          155 EQEAGLLQFLRL-DGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTEHSPFHEHVLG  231 (296)
T ss_dssp             TCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHH
T ss_pred             CCcHHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCCChhHHHHHHH
Confidence            64 556677777 9999999999998 799999999999999875 557777777 899999999999999999999999


Q ss_pred             HHHHhcCCcc
Q 048793          526 AILNLAGDRE  535 (683)
Q Consensus       526 aL~nLs~~~~  535 (683)
                      +|.||.....
T Consensus       232 aL~~l~~~~~  241 (296)
T 1xqr_A          232 ALCSLVTDFP  241 (296)
T ss_dssp             HHHHHHTTCH
T ss_pred             HHHHHHhCCh
Confidence            9999998743

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2.7e-17  Score=141.74  Aligned_cols=73  Identities=30%  Similarity=0.568  Sum_probs=64.7

Q ss_pred             CCCcccccccccCCCCceecC-CccccchhhHHHHHhcC-----CCCCCCCCCc---cCCCCCcchHHHHHHHHHHHHHc
Q 048793          273 VPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIESG-----HNTCPKTGQT---LAHTNLVTNTALKNLIALWCREQ  343 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~g-----~~~cP~~~~~---l~~~~l~pn~~l~~~i~~~~~~~  343 (683)
                      .+++|+||||+++|+|||+++ |||||||.||++||..+     ..+||.|+.+   +...+++||..|+++|+.|+..+
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            578999999999999999996 99999999999999863     4689995544   88899999999999999999877


Q ss_pred             CC
Q 048793          344 RI  345 (683)
Q Consensus       344 ~~  345 (683)
                      +.
T Consensus        84 ~r   85 (94)
T 2yu4_A           84 HR   85 (94)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.57  E-value=4.5e-15  Score=171.76  Aligned_cols=74  Identities=23%  Similarity=0.434  Sum_probs=69.7

Q ss_pred             CCCCCcccccccccCCCCceecCCc-cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATG-QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI  345 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g-~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  345 (683)
                      .++|++|+||||+++|+|||++++| +||||++|++|+.. +.+||.|+++|.+.+++||++||+.|++||.+++.
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999998 79999999999987 67999999999999999999999999999998753

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.55  E-value=9.5e-16  Score=120.45  Aligned_cols=54  Identities=19%  Similarity=0.395  Sum_probs=49.7

Q ss_pred             cccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchH
Q 048793          276 DFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNT  330 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~  330 (683)
                      .|.||||+++|+|||++ +|||||||.+|++|+.. +.+||+|+++|...+|+||+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            58999999999999999 99999999999999986 45799999999999999985

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.47  E-value=5.7e-14  Score=120.34  Aligned_cols=75  Identities=23%  Similarity=0.434  Sum_probs=67.6

Q ss_pred             CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhc-CCCCCCCCCCcc-CCCCCcchHHHHHHHHHHHHHcCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIES-GHNTCPKTGQTL-AHTNLVTNTALKNLIALWCREQRI  345 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~-g~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~  345 (683)
                      ..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.+|..++++|+.|...++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            46789999999999999999999 9999999999999975 457999999997 567899999999999999987764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.5e-13  Score=137.04  Aligned_cols=71  Identities=15%  Similarity=0.404  Sum_probs=63.6

Q ss_pred             CCCCcccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCC--CCCccCCCCCcchHHHHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPK--TGQTLAHTNLVTNTALKNLIALWCRE  342 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~  342 (683)
                      ....+|+||||+++|+|||+. .|||+|||.||++||.. |..+||+  |++++...+++||..|+++|+.|..+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            356789999999999999985 99999999999999986 3568999  88999999999999999999998653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.40  E-value=1.8e-11  Score=137.10  Aligned_cols=278  Identities=14%  Similarity=0.113  Sum_probs=212.6

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-  448 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-  448 (683)
                      ..+|+.|+..|.++.-.+.|+.|+..|+.++++   +|..++ .+++|.|+..|+...  .|.++...++.+|.++-.. 
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~   93 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISND   93 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCC
Confidence            457899999998875689999999999999874   455544 567999999998752  3888899999999886432 


Q ss_pred             ch-----------------hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHH
Q 048793          449 EA-----------------NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLM  509 (683)
Q Consensus       449 ~~-----------------~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv  509 (683)
                      ++                 +...+...++.|+.|+.+|++. +-..|.+++.+|..|+....  ++..|....++|+.||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             --------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            21                 1223444458899999999987 79999999999999997653  6788886579999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhc-CchHHHHHHhccC-----chhHHHHHHHHHHcCC----cHHHHHH
Q 048793          510 DLVKGGPTSSKRDALVAILNLAGDRETVGRLVER-GIVEIVAEAMDVL-----PEESVTILEAVVKRGG----LTAIVAA  579 (683)
Q Consensus       510 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-G~V~~Lv~lL~~~-----~~~~~~aL~~L~~l~~----~~e~~~~  579 (683)
                      .+|.+.....+..|+..|.+|+.+..+.++++.. |+++.|+.++..+     ...+..|+.+|.++..    +.....+
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE  252 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE  252 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999888889999999999999999998888774 9999999999742     2347888888887552    3456677


Q ss_pred             cCchHHHHHHHhcCCh------HHHHH---HHHHHHHHHhcCC----chHHHHHHhcCCcHHHHHHHhhcC--CHHHHHH
Q 048793          580 YNTIKKLCILLREGSD------TSRES---AAATLVTICRKGG----SEMVADIAAVPGIERVIWELMESG--TARARRK  644 (683)
Q Consensus       580 ~g~v~~Lv~lL~~~s~------~~ke~---A~~aL~~L~~~~~----~~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~k  644 (683)
                      .|+++.|..++..+..      ..-.|   +..++..++..++    ....+..+.+.|+++.|+.++...  ...++..
T Consensus       253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~  332 (651)
T 3grl_A          253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE  332 (651)
T ss_dssp             TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence            7999999988864321      12234   5555555565433    234466688899999999987765  5678877


Q ss_pred             HHHHHHHHHh
Q 048793          645 AAALLRILRR  654 (683)
Q Consensus       645 A~~lL~~l~~  654 (683)
                      |...+.-+-+
T Consensus       333 Al~tla~~ir  342 (651)
T 3grl_A          333 TINTVSEVIR  342 (651)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7777766555

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.35  E-value=3.5e-13  Score=122.17  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=62.8

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC-CCCcchHHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH-TNLVTNTALKNLIALWCR  341 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~  341 (683)
                      +++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..++++++.|..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            457899999999999999999999999999999999766799999999976 788999999999988754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.32  E-value=7.9e-13  Score=123.73  Aligned_cols=69  Identities=19%  Similarity=0.358  Sum_probs=63.1

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC-CCcchHHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT-NLVTNTALKNLIALWCR  341 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~  341 (683)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++... .+.+|..++++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999999999999999999998677999999999877 89999999999998753

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.27  E-value=7.1e-10  Score=124.32  Aligned_cols=277  Identities=13%  Similarity=0.116  Sum_probs=204.6

Q ss_pred             hhhHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCch-----------------hHHHH-HHhCcHHHHHHhhCCCCCCC
Q 048793          370 KMTASFLINKLATS-QSMEAANDAVYELRSLSKTDSD-----------------SRACI-AEAGAIALLARHLGPDTASR  430 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~-----------------nr~~i-~~~G~Ip~Lv~lL~s~~~~~  430 (683)
                      ..+.+.|+..|+.+ .|.+....++..|.++...+++                 +.+.+ .+.+.|+.|+.+|.+.    
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~----  134 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF----  134 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC----
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc----
Confidence            45788899999764 4788888999999776544332                 12233 3458999999999998    


Q ss_pred             ChhhHHHHHHHHHhcccCc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHH
Q 048793          431 LPNLQVNAVTTILNLSILE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGL  508 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~L  508 (683)
                      |..++.+++..|..|+.+.  .++..|...+++|+.||.+|+.. ....|..|+.+|.+|+....+..+++.-.|+++.|
T Consensus       135 df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L  213 (651)
T 3grl_A          135 DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL  213 (651)
T ss_dssp             CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence            9999999999999998653  36888987789999999999987 58899999999999999988877777767999999


Q ss_pred             HHhhcCCCh----hHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccCch-------hHHH---HHHHHHHcCCc
Q 048793          509 MDLVKGGPT----SSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVLPE-------ESVT---ILEAVVKRGGL  573 (683)
Q Consensus       509 v~lL~~~~~----~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~~~-------~~~~---aL~~L~~l~~~  573 (683)
                      +.++..+..    .+..+++.+|.||..++ .|+..+.+.|+++.|..+|..+.+       ...+   ++.++..+...
T Consensus       214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~  293 (651)
T 3grl_A          214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP  293 (651)
T ss_dssp             HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCC
Confidence            999976432    46799999999998865 499999999999999999973321       2333   44444433311


Q ss_pred             ----------HHHHHHcCchHHHHHHHhcC--ChHHHHHHHHHHHHHHhcCCchHHHHHHhcC---------CcHHHHHH
Q 048793          574 ----------TAIVAAYNTIKKLCILLREG--SDTSRESAAATLVTICRKGGSEMVADIAAVP---------GIERVIWE  632 (683)
Q Consensus       574 ----------~e~~~~~g~v~~Lv~lL~~~--s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~---------G~~~~L~~  632 (683)
                                .......|++..|++++...  +..++..|..++..+.++++  ..+..+...         .++..|..
T Consensus       294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~  371 (651)
T 3grl_A          294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMS  371 (651)
T ss_dssp             TSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHH
Confidence                      22334558889999998754  67788999999999988653  233333322         24444444


Q ss_pred             HhhcC-CHHHHHHHHHHHHHHH
Q 048793          633 LMESG-TARARRKAAALLRILR  653 (683)
Q Consensus       633 Ll~~~-~~~~k~kA~~lL~~l~  653 (683)
                      ++.+. ...+|-.|...++-+-
T Consensus       372 ~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          372 MVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHH
Confidence            45443 5677766666666554

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.22  E-value=4.9e-12  Score=109.82  Aligned_cols=70  Identities=19%  Similarity=0.371  Sum_probs=63.5

Q ss_pred             CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHc
Q 048793          273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQ  343 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  343 (683)
                      +++++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|..++++++.|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            45789999999999999988 99999999999999985 579999999998888999999999999987653

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.18  E-value=1.2e-11  Score=109.12  Aligned_cols=67  Identities=12%  Similarity=0.324  Sum_probs=59.9

Q ss_pred             CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCC----CCcchHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHT----NLVTNTALKNLIALWC  340 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~  340 (683)
                      +++++.||||+++|.|||++ +|||+||+.||.+|+.. ..+||.|++++...    .+.+|..+.++++.|.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~   83 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV   83 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence            56889999999999999998 99999999999999986 47999999998765    6789999999888763

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.17  E-value=9.8e-12  Score=108.11  Aligned_cols=70  Identities=19%  Similarity=0.303  Sum_probs=62.0

Q ss_pred             CCCcccccccccCCCCcee-cCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCRE  342 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~-~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~  342 (683)
                      +.+++.||||++.|.+||+ ++|||+||+.||.+|+..+..+||.|+.++...++.+|..+..++++.-..
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            4578999999999999999 999999999999999997657999999999988999998888877766443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.16  E-value=1.2e-11  Score=110.88  Aligned_cols=69  Identities=22%  Similarity=0.406  Sum_probs=62.7

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW  339 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  339 (683)
                      ..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++...++.+|..+++.|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            367889999999999999999999999999999999987666999999999988899999988888764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.14  E-value=6e-12  Score=105.69  Aligned_cols=64  Identities=31%  Similarity=0.567  Sum_probs=56.3

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc-----CCCCCCCCCCccCCCCCcchHHHHH
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES-----GHNTCPKTGQTLAHTNLVTNTALKN  334 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-----g~~~cP~~~~~l~~~~l~pn~~l~~  334 (683)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|++++...++.+|..+++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            356789999999999999999999999999999999986     3678999999998888888866543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.14  E-value=1.6e-11  Score=116.85  Aligned_cols=70  Identities=20%  Similarity=0.448  Sum_probs=61.8

Q ss_pred             CCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccC-CCCCcchHHHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLA-HTNLVTNTALKNLIALWCR  341 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~-~~~l~pn~~l~~~i~~~~~  341 (683)
                      .+.+++.||||++.|.|||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..+.++|..|..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            455788999999999999988 999999999999999987889999999985 4568899999999988743

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.14  E-value=1.5e-12  Score=108.01  Aligned_cols=63  Identities=30%  Similarity=0.597  Sum_probs=55.7

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcC------CCCCCCCCCccCCCCCcchHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG------HNTCPKTGQTLAHTNLVTNTALKN  334 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g------~~~cP~~~~~l~~~~l~pn~~l~~  334 (683)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..+      ..+||.|++++...++.+|..+++
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            567899999999999999999999999999999999752      568999999998888888876543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.12  E-value=2.4e-11  Score=108.78  Aligned_cols=67  Identities=21%  Similarity=0.351  Sum_probs=61.1

Q ss_pred             CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCRE  342 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~  342 (683)
                      +.+++.||||+++|.|||++ +|||+||+.||.+|+.   ..||.|++++...++.+|..+++++..|...
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence            45789999999999999999 9999999999999987   6899999999888999999999999887543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4.3e-11  Score=95.60  Aligned_cols=55  Identities=11%  Similarity=0.355  Sum_probs=49.5

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL  326 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l  326 (683)
                      .+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|++++...++
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            5678999999999999999999999999999999997667899999998876543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=9.7e-12  Score=104.41  Aligned_cols=64  Identities=25%  Similarity=0.543  Sum_probs=56.4

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc-----CCCCCCCCCCccCCCCCcchHHHHH
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES-----GHNTCPKTGQTLAHTNLVTNTALKN  334 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~-----g~~~cP~~~~~l~~~~l~pn~~l~~  334 (683)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|++++...++.+|..+++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            357789999999999999999999999999999999975     3678999999998888888866543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.11  E-value=5.9e-11  Score=97.13  Aligned_cols=59  Identities=24%  Similarity=0.448  Sum_probs=50.0

Q ss_pred             CCCCCcccccccccCCCCceecC-CccccchhhHHHHHhc-CCCCCCCCCCccC-CCCCcch
Q 048793          271 ANVPADFRCPISLELMRNPVVVA-TGQTYDRQSISLWIES-GHNTCPKTGQTLA-HTNLVTN  329 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~-~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~-~~~l~pn  329 (683)
                      ..+++++.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++. ...+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            46788999999999999999999 9999999999999985 3469999999743 4445555

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.11  E-value=6.5e-09  Score=102.03  Aligned_cols=189  Identities=17%  Similarity=0.153  Sum_probs=152.6

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ....++.|+..|.++ ++.++..|+..|..+..           .+++|.|+.+|.++    ++.++..|+.+|.++.  
T Consensus        17 ~~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~aL~~~~--   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIG--   78 (211)
T ss_dssp             CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----CHHHHHHHHHHHHHHC--
T ss_pred             CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC----CHHHHHHHHHHHHhhC--
Confidence            356788999999988 99999999999987632           36899999999998    9999999999998764  


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                              .. ++++.|+..|.+. ++.+|..|+.+|..+..           .++++.|+.+|.++++.++..|+.+|.
T Consensus        79 --------~~-~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~  137 (211)
T 3ltm_A           79 --------DE-RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALG  137 (211)
T ss_dssp             --------CG-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             --------CH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                    22 6899999999887 79999999999998742           468999999999999999999999999


Q ss_pred             HhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793          529 NLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVT  607 (683)
Q Consensus       529 nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~  607 (683)
                      ++..          ..+++.|+.+|.+. +.....++..|..+..       ...++.|..++...++.++..|..+|..
T Consensus       138 ~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          138 EIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             HHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             HcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            9843          35789999999754 3457777777777643       1246788889999999999999999988


Q ss_pred             HHhcCC
Q 048793          608 ICRKGG  613 (683)
Q Consensus       608 L~~~~~  613 (683)
                      +....+
T Consensus       201 ~~~~~~  206 (211)
T 3ltm_A          201 HKSFNH  206 (211)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.11  E-value=5.6e-09  Score=107.28  Aligned_cols=228  Identities=10%  Similarity=0.000  Sum_probs=164.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ....++.|+..|.++ ++.++..|++.|..+..           .++++.|+.+|.+.    ++.++..|+.+|.++...
T Consensus        21 ~~~~i~~L~~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~----~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           21 KKLNDDELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HTSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCC
T ss_pred             HHhhHHHHHHHHHcC-CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC----CHHHHHHHHHHHHHhccc
Confidence            456789999999988 99999999999988751           35789999999998    999999999999888643


Q ss_pred             chhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          449 EANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      .....      ..++.|.. ++++. ++.+|..++++|..+......    .. ..+++.|+.+|.++++.++..|+.+|
T Consensus        85 ~~~~~------~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL  152 (280)
T 1oyz_A           85 KKCED------NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAI  152 (280)
T ss_dssp             TTTHH------HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cccch------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            22111      13344443 34455 799999999999998643211    12 46789999999998999999999999


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV  606 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~  606 (683)
                      .++..          .++++.|+.+|.+. ......++..|..+.....     ..++.|..++...++.++..|+.+|.
T Consensus       153 ~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          153 SVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-----DIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             HTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            88753          35899999999854 3456667777766542111     24678888888888999999999887


Q ss_pred             HHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          607 TICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       607 ~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .+..             ..+++.|..++.+++  ++..|...|..+..
T Consensus       218 ~~~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          218 YRKD-------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HTTC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             HhCC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            7652             234666666666644  66677666666543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.10  E-value=1.4e-11  Score=110.06  Aligned_cols=69  Identities=19%  Similarity=0.340  Sum_probs=60.4

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC-------CCCcchHHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH-------TNLVTNTALKNLIALWC  340 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~  340 (683)
                      ...++|.||||++.|.+||+++|||+||+.||.+|+..+..+||.|++++..       ..+.+|..+.+.|+.|.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            3456899999999999999999999999999999998878899999998763       45667888988888874

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=4.2e-11  Score=99.80  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKN  334 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~  334 (683)
                      ...+++.||||++.|.+||+++|||+||+.||.+|+.. ..+||.|++++. ..+.+|..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~   71 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA   71 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence            45678999999999999999999999999999999986 678999999986 56778855533

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=94.16  Aligned_cols=58  Identities=16%  Similarity=0.288  Sum_probs=51.7

Q ss_pred             CCCCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          271 ANVPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      ..+.+++.||||++.|.||+++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            3567889999999999999987 99999999999999986 6799999999988777655

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=6.1e-11  Score=105.18  Aligned_cols=67  Identities=19%  Similarity=0.409  Sum_probs=56.6

Q ss_pred             CCcccccccccCCCCceecCCccccchhhHHHHHhcC--CCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793          274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLAHTNLVTNTALKNLIALWC  340 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  340 (683)
                      .+++.||||++.+.+|++++|||+||+.||.+|+..+  ..+||.|++++...++.+|..+.++++.+.
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~   87 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence            4678899999999999999999999999999999853  368999999999888888866555555443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.05  E-value=7.5e-11  Score=108.79  Aligned_cols=63  Identities=17%  Similarity=0.374  Sum_probs=51.3

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWC  340 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  340 (683)
                      +++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++...  .+|..+...|..+.
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            57889999999999999999999999999999985 67899999987543  23555555555543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.04  E-value=2.1e-08  Score=97.64  Aligned_cols=183  Identities=18%  Similarity=0.172  Sum_probs=150.4

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      +..+.+++.|.++ ++.++..|+..|..+..           .++++.|+.+|.++    ++.++..|+.+|..+.    
T Consensus        14 ~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~----~~~vr~~a~~~L~~~~----   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE----DAWVRRAAADALGQIG----   73 (201)
T ss_dssp             HHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHC----
T ss_pred             cchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC----CHHHHHHHHHHHHhhC----
Confidence            4567899999999 99999999999987642           36799999999988    9999999999997763    


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                            .. ++++.|+..|.+. ++.+|..|+++|..+..           .++++.|+.+|.++++.++..|+++|.++
T Consensus        74 ------~~-~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  134 (201)
T 3ltj_A           74 ------DE-RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI  134 (201)
T ss_dssp             ------CG-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             ------CH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence                  22 6899999999887 79999999999988632           46899999999999999999999999988


Q ss_pred             cCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          531 AGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       531 s~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      ..          .++++.|+.++.+. ......|+..|..+.. +      ..++.|..++...++.++..|..+|..+-
T Consensus       135 ~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          135 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-E------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             TC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            43          46889999999864 3457777777777643 2      24678888898899999999999887653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.04  E-value=1.1e-08  Score=100.36  Aligned_cols=188  Identities=19%  Similarity=0.185  Sum_probs=151.8

Q ss_pred             hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      .+.++.|+.+|.++    ++.++..|+.+|..+..          . ++++.|+..|.++ ++.++..|+.+|..+.   
T Consensus        18 ~~~~~~L~~~L~~~----~~~vR~~A~~~L~~~~~----------~-~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~---   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDE-DAWVRRAAADALGQIG---   78 (211)
T ss_dssp             GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCS-CHHHHHHHHHHHHHHC---
T ss_pred             HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC----------c-cHHHHHHHHHcCC-CHHHHHHHHHHHHhhC---
Confidence            47899999999998    99999999999987532          2 6899999999988 7999999999998764   


Q ss_pred             chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG  571 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~  571 (683)
                             . .++++.|+.+|.++++.++..|+.+|.++..          .++++.|+++|.+. ......|+..|..+.
T Consensus        79 -------~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A           79 -------D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  140 (211)
T ss_dssp             -------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             -------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence                   2 5789999999999999999999999998853          35789999999754 445777777777764


Q ss_pred             CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                      .       ...++.|..++...++.++..|+.+|..+..             ..+++.|..++.++++.+|+.|...|..
T Consensus       141 ~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          141 D-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            3       2367889999988899999999999888742             1346778889999999999999999998


Q ss_pred             HHhhhc
Q 048793          652 LRRWAA  657 (683)
Q Consensus       652 l~~~~~  657 (683)
                      +.....
T Consensus       201 ~~~~~~  206 (211)
T 3ltm_A          201 HKSFNH  206 (211)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            877543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=111.34  Aligned_cols=68  Identities=22%  Similarity=0.410  Sum_probs=62.0

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALW  339 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  339 (683)
                      .++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++...++.||..+.+.|.++
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            67899999999999999999999999999999999987667999999999988889998888877753

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.5e-10  Score=92.99  Aligned_cols=56  Identities=21%  Similarity=0.543  Sum_probs=49.0

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCCCCccCCCCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKTGQTLAHTNL  326 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~~~~l~~~~l  326 (683)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+..  +..+||.|++++...++
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            357789999999999999999999999999999999973  46689999998876543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.99  E-value=1.4e-10  Score=103.63  Aligned_cols=66  Identities=17%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             CCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc-chHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV-TNTALKNLIAL  338 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~-pn~~l~~~i~~  338 (683)
                      +++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+.+++.+
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            4567899999999999999999999999999999998677999999999877765 45566665554

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.98  E-value=7.5e-11  Score=109.00  Aligned_cols=67  Identities=15%  Similarity=0.321  Sum_probs=56.7

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccC---------CCCCcchHHHHHHHHH
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA---------HTNLVTNTALKNLIAL  338 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~---------~~~l~pn~~l~~~i~~  338 (683)
                      .+.++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|++++.         ...+.|+..+++.|..
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            467899999999999999999999999999999999877779999998643         2345588777777764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.98  E-value=2.3e-08  Score=97.34  Aligned_cols=185  Identities=19%  Similarity=0.185  Sum_probs=151.2

Q ss_pred             hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      .+..+.++.+|.++    ++.++..|+.+|..+..          . ++++.|+..|.++ ++.+|..|+.+|..+.   
T Consensus        13 ~~~~~~~i~~L~~~----~~~vr~~A~~~L~~~~~----------~-~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~---   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQDD----SYYVRRAAAYALGKIGD----------E-RAVEPLIKALKDE-DAWVRRAAADALGQIG---   73 (201)
T ss_dssp             HHHHHHHHHHTTCS----CHHHHHHHHHHHHHHCC----------G-GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC---
T ss_pred             CcchHHHHHHhcCC----CHHHHHHHHHHHHhcCC----------h-hHHHHHHHHHcCC-CHHHHHHHHHHHHhhC---
Confidence            46789999999999    99999999999987542          2 6899999999887 7999999999998763   


Q ss_pred             chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG  571 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~  571 (683)
                             . .++++.|+.+|.++++.++..|+++|.++..          .++++.|+.+|.+. ......|+..|..+.
T Consensus        74 -------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           74 -------D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             -------C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             -------C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                   2 4689999999999999999999999998743          35789999999754 345677777777664


Q ss_pred             CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                      .       ...++.|..++.+.++.++..|+.+|..+..   .          .+++.|..++.++++.+|..|...|..
T Consensus       136 ~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          136 D-------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             C-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3       2467889999998999999999999888732   1          246778888999999999999999887


Q ss_pred             HHh
Q 048793          652 LRR  654 (683)
Q Consensus       652 l~~  654 (683)
                      +..
T Consensus       196 l~~  198 (201)
T 3ltj_A          196 HKS  198 (201)
T ss_dssp             CC-
T ss_pred             HHh
Confidence            653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=2.1e-10  Score=91.22  Aligned_cols=55  Identities=29%  Similarity=0.536  Sum_probs=49.4

Q ss_pred             Cccccccccc-CCCCc----eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          275 ADFRCPISLE-LMRNP----VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       275 ~~f~CPis~~-~m~dP----v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      +++.||||++ .+.+|    ++++|||+|++.||.+|+..+...||.|++++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999998777899999999988877765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6.3e-10  Score=87.83  Aligned_cols=46  Identities=26%  Similarity=0.625  Sum_probs=41.8

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCC
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKT  317 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~  317 (683)
                      .+.+++.||||++.+.+||+++|||+|++.||.+|++.  +..+||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            56789999999999999999999999999999999985  45689986

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.88  E-value=1.7e-08  Score=120.27  Aligned_cols=272  Identities=13%  Similarity=0.117  Sum_probs=187.1

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHH--H--HHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRAC--I--AEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~--i--~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      +.++.|+..+.++ ++..+..|+..|..++++.+..-..  +  .-.+.+|.|+.++.+.    ++.++..|+.+|.++.
T Consensus       128 ~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~----~~~vR~~A~~aL~~~~  202 (852)
T 4fdd_A          128 DLLPKLCSLLDSE-DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS----SPKIRSHAVACVNQFI  202 (852)
T ss_dssp             THHHHHHHHHSCS-SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS----SHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Confidence            3567788999988 8999999999999998765422110  0  0134677788888877    9999999999999887


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      ...... .....++.++.+..++.++ +.++|..|+.+|..++........-.- .+.++.++.++.+.++.++..|+..
T Consensus       203 ~~~~~~-~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~  279 (852)
T 4fdd_A          203 ISRTQA-LMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEF  279 (852)
T ss_dssp             TTTCHH-HHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             hcccHH-HHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHH
Confidence            543221 1111125788888888877 799999999999999875432211111 3688888899988888899999999


Q ss_pred             HHHhcCCcchhHHHHh--cCchHHHHHHhc----------cC----c---------hh---HHHHHHHHHHcCCcHHHHH
Q 048793          527 ILNLAGDRETVGRLVE--RGIVEIVAEAMD----------VL----P---------EE---SVTILEAVVKRGGLTAIVA  578 (683)
Q Consensus       527 L~nLs~~~~n~~~iv~--aG~V~~Lv~lL~----------~~----~---------~~---~~~aL~~L~~l~~~~e~~~  578 (683)
                      +..++.....+..+-.  ...++.|+..+.          .+    .         ..   +..++..|+...+. ....
T Consensus       280 l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~  358 (852)
T 4fdd_A          280 WLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLP  358 (852)
T ss_dssp             HHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHH
Confidence            9999876543332211  255677777762          11    0         01   33444444432221 1111


Q ss_pred             HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          579 AYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       579 ~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                        ..++.+...+.+.+++.|+.|+.+|.+++.+.+. .....+  .++++.|..++.+.++++|..|.+.|..+..+-
T Consensus       359 --~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          359 --HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             --HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence              2356666677778999999999999999876543 222222  467899999999999999999999999988854

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.86  E-value=7.1e-10  Score=89.66  Aligned_cols=57  Identities=19%  Similarity=0.381  Sum_probs=50.9

Q ss_pred             CCCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          272 NVPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      ...+++.||||++.+.+|       ++++|||+|++.||.+|+.. ..+||.|++++...++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            456789999999999999       89999999999999999986 4699999999988887765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.82  E-value=1.7e-07  Score=96.13  Aligned_cols=200  Identities=14%  Similarity=0.025  Sum_probs=151.4

Q ss_pred             HHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 048793          410 IAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLS  489 (683)
Q Consensus       410 i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls  489 (683)
                      +...+.++.|+..|.++    ++.++..|+.+|.++.          . +++++.|+.+|++. ++.+|..|+.+|..+.
T Consensus        19 ~~~~~~i~~L~~~L~~~----~~~vr~~A~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~   82 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDH----NSLKRISSARVLQLRG----------G-QDAVRLAIEFCSDK-NYIRRDIGAFILGQIK   82 (280)
T ss_dssp             HHHTSCHHHHHHHTTCS----SHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSC
T ss_pred             HHHHhhHHHHHHHHHcC----CHHHHHHHHHHHHccC----------C-chHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence            34568999999999998    9999999999998875          2 26889999999987 7999999999999886


Q ss_pred             cCcchhhHHhhhcccHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793          490 GVHAHRKTLGRKTRVVKGLMD-LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV  567 (683)
Q Consensus       490 ~~~~~~~~i~~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L  567 (683)
                      .....   +   ...++.|.. ++.++++.++..|+++|.++......    ....+++.|+.+|.+. +.....++..|
T Consensus        83 ~~~~~---~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL  152 (280)
T 1oyz_A           83 ICKKC---E---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAI  152 (280)
T ss_dssp             CCTTT---H---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ccccc---c---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            43221   1   123444543 45677888999999999998743211    1234688899998754 34566677777


Q ss_pred             HHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHH
Q 048793          568 VKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAA  647 (683)
Q Consensus       568 ~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~  647 (683)
                      ..+..       ...++.|+.++...++.++..|+++|..+....           ..+++.|..++.++++.+|..|.+
T Consensus       153 ~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~  214 (280)
T 1oyz_A          153 SVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-----------SDIRDCFVEMLQDKNEEVRIEAII  214 (280)
T ss_dssp             HTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-----------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-----------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence            76543       247899999999999999999999998875321           134678889999999999999999


Q ss_pred             HHHHHH
Q 048793          648 LLRILR  653 (683)
Q Consensus       648 lL~~l~  653 (683)
                      .|..+.
T Consensus       215 aL~~~~  220 (280)
T 1oyz_A          215 GLSYRK  220 (280)
T ss_dssp             HHHHTT
T ss_pred             HHHHhC
Confidence            998765

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=3.5e-09  Score=89.37  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=47.4

Q ss_pred             CCCCcccccccccCCCC----ceecCCccccchhhHHHHHhcC--CCCCCCCCCccCCC
Q 048793          272 NVPADFRCPISLELMRN----PVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLAHT  324 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~~~  324 (683)
                      .+.+++.||||++.+.+    |++++|||+||+.||.+|+..+  ..+||.|++++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            56788999999999999    9999999999999999999864  47899999987654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2.6e-09  Score=82.58  Aligned_cols=46  Identities=26%  Similarity=0.706  Sum_probs=41.5

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhc--CCCCCCCC
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKT  317 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~--g~~~cP~~  317 (683)
                      .+.+++.||||++.+.+|++++|||+|++.||.+|+..  +..+||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46688999999999999999999999999999999875  56789986

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=88.58  Aligned_cols=52  Identities=13%  Similarity=0.127  Sum_probs=45.9

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT  324 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~  324 (683)
                      ...+++.||||++.+.+||+++|||+|++.||.+|+.. ..+||.|++++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED   62 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred             cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence            34578999999999999999999999999999999986 47999999887543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.75  E-value=1.7e-09  Score=85.35  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=48.2

Q ss_pred             CcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          275 ADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       275 ~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      +++.||||++.+.+|       ++++|||+|++.||.+|+.. ..+||.|++++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            568899999999998       88899999999999999987 6799999999988777654

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.74  E-value=9.4e-09  Score=84.67  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             CCCCcccccccccCC--CCceecC--CccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793          272 NVPADFRCPISLELM--RNPVVVA--TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL  326 (683)
Q Consensus       272 ~~p~~f~CPis~~~m--~dPv~~~--~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l  326 (683)
                      ...+++.||||++.+  .|+++.+  |||+||+.||.+|++.+...||.||+++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            456889999999998  5677776  999999999999998777899999999876543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.73  E-value=9.8e-08  Score=113.68  Aligned_cols=270  Identities=11%  Similarity=0.027  Sum_probs=184.3

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..++.++..+.+. ++++|..|+++|..+....+.   .+..  .+.++.|..++.++    +..++..|+.+|.+++..
T Consensus       174 ~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~----~~~vr~~a~~~L~~l~~~  245 (852)
T 4fdd_A          174 IMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDE----EPEVRKNVCRALVMLLEV  245 (852)
T ss_dssp             HHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHh
Confidence            4567788888877 899999999999988765431   1111  26788899999888    999999999999999864


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhh-----------cC--
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLV-----------KG--  514 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL-----------~~--  514 (683)
                      ....-.-.- ++.++.++.++++. +.+++..|+.++..++.....+..+. .....+|.|+..+           .+  
T Consensus       246 ~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~  323 (852)
T 4fdd_A          246 RMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVE  323 (852)
T ss_dssp             CHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---
T ss_pred             CHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcc
Confidence            322110011 25778888888876 68999999999999987653333221 1125677777776           22  


Q ss_pred             ---------CChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HHHHHH--cC
Q 048793          515 ---------GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TAIVAA--YN  581 (683)
Q Consensus       515 ---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e~~~~--~g  581 (683)
                               .+...++.|+.+|..|+.....  .++ ..+++.+.+++.+. ......|+..|..++.. .+....  ..
T Consensus       324 ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~  400 (852)
T 4fdd_A          324 GGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE  400 (852)
T ss_dssp             ---------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred             cccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence                     1224578899999988764321  122 24567777777643 34577777788777643 222211  13


Q ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          582 TIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .++.++..+...++.+|..|+++|..++...+.......+  .++++.|+..+.++++++|+.|.+.|..+.+.
T Consensus       401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            4677888888889999999999999988742210000111  25678888888889999999999999988764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=6.7e-09  Score=83.25  Aligned_cols=52  Identities=21%  Similarity=0.437  Sum_probs=46.3

Q ss_pred             CCCCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          271 ANVPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      ..+.+++.||||++.+.+|       ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            3567889999999999998       88999999999999999986 6799999988753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.66  E-value=2e-08  Score=82.68  Aligned_cols=57  Identities=25%  Similarity=0.511  Sum_probs=48.0

Q ss_pred             CCCCcccccccccCCCCce---ecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          272 NVPADFRCPISLELMRNPV---VVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv---~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      ...+++.||||++.|.+|.   +++|||+|++.||.+|+.. +.+||.|++++....+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            4557889999999998774   4599999999999999975 5799999999887766654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.65  E-value=7.9e-07  Score=100.29  Aligned_cols=263  Identities=10%  Similarity=0.077  Sum_probs=184.6

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ...++.+...+.+. ++.++..+++.|..++..-..  .. .....+|.+..+|.+.    ++.++..++.+|..+...-
T Consensus       323 ~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~----~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          323 SQILPCIKELVSDA-NQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDE----CPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCS----CHHHHHHHHTTCHHHHHHS
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCC----chHHHHHHHHHHHHHHHhc
Confidence            34567788888887 899999999999988754321  11 2345889999999988    8999999998887775321


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      .. ..+. . ..++.|..++++. +...|..++.+|..++..-...  ... ...++.++.+|.+++..+++.|+.+|..
T Consensus       395 ~~-~~~~-~-~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GI-RQLS-Q-SLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE--FFD-EKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             CH-HHHH-H-HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG--GCC-HHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             CH-HHHH-H-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH--HHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            11 1121 2 5788888888876 7999999999999887532211  112 3578899999998888899999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcCCcH-HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRGGLT-AIVAAYNTIKKLCILLREGSDTSRESAAATLVT  607 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~-e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~  607 (683)
                      ++..-+..  .....++|.|+.++.+.. .....++..+..++..- ........++.|.+.+....+.+|..++++|..
T Consensus       468 l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  545 (588)
T 1b3u_A          468 LVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK  545 (588)
T ss_dssp             HHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHH
Confidence            97643322  223456788887776432 33444444444433211 111112356788888888889999999999999


Q ss_pred             HHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          608 ICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       608 L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ++..-+....     ...+++.|..+..+.+.++|..|...+..+.+
T Consensus       546 l~~~~~~~~~-----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          546 IGPILDNSTL-----QSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HGGGSCHHHH-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHhchhhh-----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            9986554321     13567888888888999999999999987653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.64  E-value=1.5e-06  Score=97.99  Aligned_cols=170  Identities=11%  Similarity=0.133  Sum_probs=122.2

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..++.+...+... ++.+|..|+..|..++......   ......+|.|..++.++    +..++..|+.+|..++..-.
T Consensus       164 ~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~----~~~vr~~a~~~l~~l~~~~~  235 (588)
T 1b3u_A          164 ELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE----QDSVRLLAVEACVNIAQLLP  235 (588)
T ss_dssp             HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS----CHHHHTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCC
Confidence            3566777777777 9999999999999998765421   22457899999999988    89999999999988874322


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      . ..+..  ..++.+..+++.. +..+|..|+.+|..++..-....  .. ...++.++.++.+.++.++..|+.+|..+
T Consensus       236 ~-~~~~~--~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  308 (588)
T 1b3u_A          236 Q-EDLEA--LVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEF  308 (588)
T ss_dssp             H-HHHHH--HTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             H-HHHHH--HHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            1 11222  4788888888776 79999999999999876422211  12 46899999999988889999999999998


Q ss_pred             cCCcch--hHHHHhcCchHHHHHHhcc
Q 048793          531 AGDRET--VGRLVERGIVEIVAEAMDV  555 (683)
Q Consensus       531 s~~~~n--~~~iv~aG~V~~Lv~lL~~  555 (683)
                      +..-..  +....-..++|.+..++.+
T Consensus       309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d  335 (588)
T 1b3u_A          309 CENLSADCRENVIMSQILPCIKELVSD  335 (588)
T ss_dssp             HHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHhChhhhhhHHHHHHHHHHHHHhcC
Confidence            764321  1112223455666666654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.61  E-value=1.7e-07  Score=108.90  Aligned_cols=190  Identities=8%  Similarity=0.097  Sum_probs=139.8

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHH-HhhCCCCCCCChhhHHHHHHHHHhcccC--
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLA-RHLGPDTASRLPNLQVNAVTTILNLSIL--  448 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv-~lL~s~~~~~d~~~qe~A~~aL~nLs~~--  448 (683)
                      .|..+++.|+++ +++.|..|+++|.+++. ++.+|..+...|+|+.++ .+|.+.    +.++++.|+++|.||+.+  
T Consensus        35 ~i~Pll~~L~S~-~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~----~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           35 KILPVLKDLKSP-DAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDN----NIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             TTHHHHHHHSSS-CCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCS----CHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHcCCC-CHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhhcC
Confidence            455677889998 99999999999999997 567899999998887765 578877    999999999999999975  


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCC-------------C-------HHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHH
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGA-------------T-------WEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKG  507 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~-------------~-------~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~  507 (683)
                      .+.+..++.. |++++|..+|++..             .       .....+++.+|++||...+ ....+.. .|+++.
T Consensus       109 ~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~  186 (684)
T 4gmo_A          109 ADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILR  186 (684)
T ss_dssp             HHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHH
T ss_pred             chHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHH
Confidence            4667888887 99999999986310             0       1234578889999986544 4556666 799999


Q ss_pred             HHHhhcCCC---hhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHH---HHHHhccCchhHHHHHHHHHH
Q 048793          508 LMDLVKGGP---TSSKRDALVAILNLAGDRE-TVGRLVERGIVEI---VAEAMDVLPEESVTILEAVVK  569 (683)
Q Consensus       508 Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~---Lv~lL~~~~~~~~~aL~~L~~  569 (683)
                      |+..|.+.+   .++...|+.+|++|+.+.. ....+.+.|....   +..+..........+.++|.+
T Consensus       187 l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N  255 (684)
T 4gmo_A          187 LLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN  255 (684)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence            999985432   4688999999999998765 4455555554332   233223333334445555544

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.61  E-value=3.5e-07  Score=99.88  Aligned_cols=274  Identities=10%  Similarity=0.048  Sum_probs=178.7

Q ss_pred             hhHHHHHHHhccCC-CHHHHHHHHHHHHhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          371 MTASFLINKLATSQ-SMEAANDAVYELRSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~-~~~~~~~A~~~L~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      +.++.|+..+.++. ++..+..|+..|..++++. ...-... -..+++.++.+|.+..  .+..++..|+.++.++...
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~  204 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF  204 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHH
Confidence            35677888887653 6788999999999998754 1110111 1247788888887650  1478999999999987532


Q ss_pred             -chhH-HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhc-ccHHHHHHhhcCCChhHHHHH
Q 048793          449 -EANK-TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKT-RVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       449 -~~~k-~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~-G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                       .++- ...... -.++.+...+.+. +.+++..++.+|..+......  ...+   . +.++.++..+.+.++.++..|
T Consensus       205 ~~~~~~~~~~~~-~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a  279 (462)
T 1ibr_B          205 TKANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQG  279 (462)
T ss_dssp             THHHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHhhhhhHHHH-HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHH
Confidence             1110 011111 1355555555555 789999999999998864332  1222   3 678888888888888899999


Q ss_pred             HHHHHHhcCCcc------------------hhHHHHh---cCchHHHHHHhccC--------chh---HHHHHHHHHHcC
Q 048793          524 LVAILNLAGDRE------------------TVGRLVE---RGIVEIVAEAMDVL--------PEE---SVTILEAVVKRG  571 (683)
Q Consensus       524 ~~aL~nLs~~~~------------------n~~~iv~---aG~V~~Lv~lL~~~--------~~~---~~~aL~~L~~l~  571 (683)
                      +..+..++....                  ....+++   ..++|.|++.|.+.        ...   +..++..|+...
T Consensus       280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~  359 (462)
T 1ibr_B          280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc
Confidence            999988876421                  0111121   23567777777531        112   445555555543


Q ss_pred             CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                      +. ...  ...++.+...+.+.+.+.|+.|+.+|..++.+.........+  ..+++.|..++.+..+++|..|.+.|..
T Consensus       360 ~~-~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  434 (462)
T 1ibr_B          360 ED-DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (462)
T ss_dssp             TT-THH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             cH-HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            31 111  123456666677788999999999999998754322111112  5789999999999999999999999999


Q ss_pred             HHhhhc
Q 048793          652 LRRWAA  657 (683)
Q Consensus       652 l~~~~~  657 (683)
                      +..+-.
T Consensus       435 ~~~~~~  440 (462)
T 1ibr_B          435 ICELLP  440 (462)
T ss_dssp             HHHHGG
T ss_pred             HHHhcc
Confidence            998654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.57  E-value=3.9e-07  Score=105.87  Aligned_cols=189  Identities=13%  Similarity=0.063  Sum_probs=137.3

Q ss_pred             cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcC--
Q 048793          415 AIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGV--  491 (683)
Q Consensus       415 ~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~--  491 (683)
                      .|.+++..|+++    ++..|..|+.+|.||+.+...+..+... |+|..++. +|... +.+++..|+++|.||+..  
T Consensus        35 ~i~Pll~~L~S~----~~~~r~~A~~al~~l~~~~~~~~l~~~~-~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           35 KILPVLKDLKSP----DAKSRTTAAGAIANIVQDAKCRKLLLRE-QVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             TTHHHHHHHSSS----CCSHHHHHHHHHHHHTTSHHHHHHHHHT-THHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHcCCC----CHHHHHHHHHHHHHHHcCcHHHHHHHHc-CCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcC
Confidence            345577889998    9999999999999999988888888887 88877665 56555 799999999999999965  


Q ss_pred             cchhhHHhhhcccHHHHHHhhcCCC---------------------hhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHH
Q 048793          492 HAHRKTLGRKTRVVKGLMDLVKGGP---------------------TSSKRDALVAILNLAGDRE-TVGRLVERGIVEIV  549 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~lL~~~~---------------------~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~L  549 (683)
                      .+.+..+.. .|++++|..+|+...                     ......++.+|++||...+ ....+...|+++.|
T Consensus       109 ~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l  187 (684)
T 4gmo_A          109 ADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL  187 (684)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred             chHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence            467777887 899999999985311                     1133567889999997544 56677889999999


Q ss_pred             HHHhcc-C---chhHHHHHHHHHHcCC-cHHHHHHc---CchHHHHHH--HhcCChHHHHHHHHHHHHHHh
Q 048793          550 AEAMDV-L---PEESVTILEAVVKRGG-LTAIVAAY---NTIKKLCIL--LREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       550 v~lL~~-~---~~~~~~aL~~L~~l~~-~~e~~~~~---g~v~~Lv~l--L~~~s~~~ke~A~~aL~~L~~  610 (683)
                      +..|.+ +   .+....|+..|..++. +.+....+   +....+..+  +...+...+..++++|+++..
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence            999853 1   3456777777777654 44444332   322222222  334555567788999999853

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.55  E-value=1.6e-06  Score=98.97  Aligned_cols=262  Identities=10%  Similarity=0.049  Sum_probs=175.1

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..++.+.+.|.+. ++.+|..|+.++..+...+++   .+.+.|++|.|..+|.+.    |+.++.+|+.+|.+++.+..
T Consensus       121 ~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~----d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          121 YLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS----NPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS----CHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC----ChhHHHHHHHHHHHHHhhCC
Confidence            4566788889888 999999999999999886654   333468899999999988    99999999999999987643


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      ....+.-.++.+..|+..|... ++-.+.....+|..++..++.  .  . ...++.+..+|++.++.++..|++++.++
T Consensus       193 ~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~--~--~-~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          193 NSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR--E--A-QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH--H--H-HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH--H--H-HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            2111111124577788888776 677888888888777644321  1  1 45788899999988899999999999998


Q ss_pred             cCC----cchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcC------------------Cc-HHHHHH-------c
Q 048793          531 AGD----RETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRG------------------GL-TAIVAA-------Y  580 (683)
Q Consensus       531 s~~----~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~------------------~~-~e~~~~-------~  580 (683)
                      ...    ++.... +-..++++|+.++.++++..-.++..|..+.                  .. ...+..       .
T Consensus       267 ~~~~~~~~~~~~~-~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l  345 (591)
T 2vgl_B          267 LELLPKDSDYYNM-LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL  345 (591)
T ss_dssp             CCSCCBTTBSHHH-HHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred             hhccCCCHHHHHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHH
Confidence            742    222222 2345567777777644444333444333211                  00 111100       0


Q ss_pred             ---CchHHHH----HHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          581 ---NTIKKLC----ILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       581 ---g~v~~Lv----~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                         ..+..++    ..+...+...+..+++++..+|...+. ..      ...++.|+.++......++..+...++.+-
T Consensus       346 ~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SA------ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HH------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HH------HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence               1233333    344467888999999999998875432 11      245778888888888777777766665553


Q ss_pred             h
Q 048793          654 R  654 (683)
Q Consensus       654 ~  654 (683)
                      +
T Consensus       419 ~  419 (591)
T 2vgl_B          419 R  419 (591)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.54  E-value=5.6e-08  Score=77.67  Aligned_cols=48  Identities=27%  Similarity=0.455  Sum_probs=42.4

Q ss_pred             CcccccccccCCCCc-eecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          275 ADFRCPISLELMRNP-VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       275 ~~f~CPis~~~m~dP-v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            467899999999997 67899999999999999986 5799999988753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.54  E-value=5.7e-08  Score=74.08  Aligned_cols=47  Identities=23%  Similarity=0.444  Sum_probs=41.8

Q ss_pred             CcccccccccCCCC----ceecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRN----PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~d----Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      +++.||||++.+.+    +++++|||+|++.||.+|+..+ .+||.|++++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            56789999999977    7888999999999999999874 89999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.50  E-value=2.8e-08  Score=90.39  Aligned_cols=55  Identities=20%  Similarity=0.404  Sum_probs=48.7

Q ss_pred             CCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          274 PADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       274 p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      ++++.||||++.|.+|       ++++|||+|++.||.+|+.. ..+||.|++++....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            5789999999999999       99999999999999999986 5699999999887666554

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=2.3e-08  Score=80.50  Aligned_cols=52  Identities=15%  Similarity=0.471  Sum_probs=46.0

Q ss_pred             CCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793          272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN  325 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~  325 (683)
                      .+.+++.||||++.+.+ ++++|||+|++.||.+|+. +..+||.|++++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            45678999999999999 9999999999999999998 4789999998876543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.48  E-value=3.9e-08  Score=75.55  Aligned_cols=46  Identities=13%  Similarity=0.117  Sum_probs=40.7

Q ss_pred             CCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          274 PADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .+++.||||++.+.+|++++|||+|++.||.+|    ...||.|++++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            367899999999999999999999999999884    5689999988653

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=77.16  Aligned_cols=51  Identities=16%  Similarity=0.413  Sum_probs=44.6

Q ss_pred             CCCCcccccccccCCCCceec---CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          272 NVPADFRCPISLELMRNPVVV---ATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      +..++..||||++.+.+|..+   +|||+|++.||.+|+.. +.+||.|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            566788999999999988766   99999999999999987 4599999998754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.45  E-value=2e-06  Score=98.26  Aligned_cols=258  Identities=14%  Similarity=0.118  Sum_probs=179.6

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      ...+++++.+. +.+.++-+.-.+..+++.+++..     .-++..|.+-|.++    ++.++..|+.+|.++.. ++  
T Consensus        51 ~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~----n~~ir~~AL~~L~~i~~-~~--  117 (591)
T 2vgl_B           51 FPDVVNCMQTD-NLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP----NPLIRALAVRTMGCIRV-DK--  117 (591)
T ss_dssp             HHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS----SHHHHHHHHHHHHTCCS-GG--
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC----CHHHHHHHHHHHHcCCh-HH--
Confidence            34567778887 89999888888888877554321     23567778888888    99999999999999862 22  


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                        +..  ..++.+...|.+. ++.+|..|+.+|..+......  .+.. .++++.|..+|.+.++.++..|+.+|..++.
T Consensus       118 --~~~--~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~--~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          118 --ITE--YLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ--MVED-QGFLDSLRDLIADSNPMVVANAVAALSEISE  189 (591)
T ss_dssp             --GHH--HHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC--CHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred             --HHH--HHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh--hccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence              222  3567788888877 799999999999999874332  2222 5889999999999899999999999999988


Q ss_pred             Ccchh-HHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          533 DRETV-GRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       533 ~~~n~-~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      ..... ..-...+.+..|+..+.+.. -.....+..|..++..... .....++.+..++++.++.++..|++++..+..
T Consensus       190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~-~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR-EAQSICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH-HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            65422 11122345667777776433 3356677777776643211 111235556566777888999999999888864


Q ss_pred             cC--CchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          611 KG--GSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       611 ~~--~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .-  ..+....++  ..+.+.|+.|+. +++.+|.-|...|..+...
T Consensus       269 ~~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          269 LLPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             SCCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence            21  112233222  345677777664 7889999988888877664

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.44  E-value=1.3e-07  Score=72.12  Aligned_cols=48  Identities=21%  Similarity=0.616  Sum_probs=42.0

Q ss_pred             CCCcccccccccCCCC---ceecC-CccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          273 VPADFRCPISLELMRN---PVVVA-TGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       273 ~p~~f~CPis~~~m~d---Pv~~~-~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      +.++..||||++.+.+   ++.++ |||.|++.||.+|+.. +.+||.|++++
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            3467889999999988   78886 9999999999999976 67999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.40  E-value=2.3e-07  Score=74.34  Aligned_cols=51  Identities=12%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             CCCCcccccccccCCC---CceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          272 NVPADFRCPISLELMR---NPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~---dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      ...++..||||++.+.   +++.++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3456788999999884   5678899999999999999987 4579999988754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.40  E-value=1.5e-07  Score=80.05  Aligned_cols=51  Identities=18%  Similarity=0.464  Sum_probs=44.2

Q ss_pred             CCCCcccccccccCCCC---ceecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          272 NVPADFRCPISLELMRN---PVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       272 ~~p~~f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      ...++..||||++.+.+   ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            34577899999999988   888899999999999999985 6699999988754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=76.89  Aligned_cols=50  Identities=12%  Similarity=0.385  Sum_probs=43.7

Q ss_pred             CCcccccccccCCCCc---eecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793          274 PADFRCPISLELMRNP---VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT  324 (683)
Q Consensus       274 p~~f~CPis~~~m~dP---v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~  324 (683)
                      .++..||||++.+.++   +.++|||.|++.||.+|+.. +.+||.|++++...
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence            4677899999999988   77899999999999999986 56999999887643

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.39  E-value=2.1e-07  Score=82.42  Aligned_cols=51  Identities=14%  Similarity=0.270  Sum_probs=42.9

Q ss_pred             CCCcccccccccCCCCce------------------ecCCccccchhhHHHHHhc----CCCCCCCCCCccCC
Q 048793          273 VPADFRCPISLELMRNPV------------------VVATGQTYDRQSISLWIES----GHNTCPKTGQTLAH  323 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv------------------~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~  323 (683)
                      .+.+..||||++.|.+|+                  +++|||.|++.||.+|+..    ++.+||.|+..+..
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            345679999999998886                  7899999999999999963    35689999988753

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.34  E-value=1.8e-07  Score=99.39  Aligned_cols=50  Identities=20%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCC
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHT  324 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~  324 (683)
                      .+..||||++.+.+||+++|||+||+.||..|+..+..+||.|++++...
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            34799999999999999999999999999999986678999999987654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.30  E-value=1.5e-07  Score=76.69  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      +++.||||++.+.|||+++|||+ ||+.||.+|     ..||.|++++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            66789999999999999999999 999999999     689999988653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.22  E-value=2.4e-05  Score=92.52  Aligned_cols=266  Identities=11%  Similarity=0.101  Sum_probs=172.2

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++.+...+.+. +...+..|+..|..++.... ..-.... ..++|.|+..+.+.    ++.++..++++|.+++..-.
T Consensus       370 l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~  443 (861)
T 2bpt_A          370 VLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ----SLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHhh
Confidence            445666667777 89999999999999986542 1111111 25789999999888    89999999999999875311


Q ss_pred             hH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc------hhhHHhhhcccHHHHHHhhcCCC--hhH
Q 048793          451 NK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA------HRKTLGRKTRVVKGLMDLVKGGP--TSS  519 (683)
Q Consensus       451 ~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~------~~~~i~~~~G~i~~Lv~lL~~~~--~~~  519 (683)
                      ..   ....  +..++.++..|++.  +.++..|+++|.+++..-.      ....+   ...++.|+.++.+.+  +.+
T Consensus       444 ~~~~~~~~~--~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~v  516 (861)
T 2bpt_A          444 ESIDPQQHL--PGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNA  516 (861)
T ss_dssp             GGSCTTTTH--HHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGH
T ss_pred             hhcCCHHHH--HHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHH
Confidence            10   1111  14678888888653  8899999999998876421      11222   357888999987543  678


Q ss_pred             HHHHHHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC----------------chhHHHHHHHHHHc---CCcHHHHHH
Q 048793          520 KRDALVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL----------------PEESVTILEAVVKR---GGLTAIVAA  579 (683)
Q Consensus       520 ~~~A~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~----------------~~~~~~aL~~L~~l---~~~~e~~~~  579 (683)
                      +..++.+|..+...... ....+ ...++.+++.|...                .+....++..|..+   .+. .....
T Consensus       517 r~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~  594 (861)
T 2bpt_A          517 RASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPV  594 (861)
T ss_dssp             HHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGG
T ss_pred             HHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhHHH
Confidence            88999999998765432 22222 24667777766421                11123344444332   221 00000


Q ss_pred             -cCchHHHHHHHhcCCh-HHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          580 -YNTIKKLCILLREGSD-TSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       580 -~g~v~~Lv~lL~~~s~-~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                       ...++.+..++...+. ..++.+..++..++...+... ...+  ..+++.|...+.+.++.++..|..++..+.+.
T Consensus       595 ~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          595 ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF-EKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG-HHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH-HHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence             0224556666776666 889999999988887544332 2223  24788888888888888999999988877663

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.18  E-value=2.1e-05  Score=90.15  Aligned_cols=144  Identities=12%  Similarity=0.080  Sum_probs=106.3

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..+..|.+.|.++ ++..+..|++.|.++...      .+. ...+|.+..+|.+.    ++.++..|+.++.++.....
T Consensus       107 l~in~l~kDL~~~-n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~~----~~~VRk~A~~al~~l~~~~p  174 (618)
T 1w63_A          107 LMTNCIKNDLNHS-TQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKTS----NSYLRKKAALCAVHVIRKVP  174 (618)
T ss_dssp             HHHHHHHHHHSCS-SSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHSC----CHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHhcCCC-CHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHCh
Confidence            4577888999988 999999999999998632      122 35788999999998    99999999999999975322


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC---------------C
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG---------------G  515 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~---------------~  515 (683)
                         .++.  +.++.+..+|... ++.++.+|+.+|..++..+.......  ...++.|+.+|.+               .
T Consensus       175 ---~~v~--~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~  246 (618)
T 1w63_A          175 ---ELME--MFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS  246 (618)
T ss_dssp             ---GGGG--GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred             ---HHHH--HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence               1222  5777788888776 79999999999999987643211111  3578888887753               2


Q ss_pred             ChhHHHHHHHHHHHhcCCc
Q 048793          516 PTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       516 ~~~~~~~A~~aL~nLs~~~  534 (683)
                      ++-.+...+.+|..++..+
T Consensus       247 ~~~~q~~il~~L~~l~~~~  265 (618)
T 1w63_A          247 DPFLQVRILRLLRILGRND  265 (618)
T ss_dssp             CHHHHHHHHHHHHHHTTTC
T ss_pred             CChHHHHHHHHHHHhCCCC
Confidence            4556667778888877653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.16  E-value=3.4e-07  Score=83.11  Aligned_cols=56  Identities=20%  Similarity=0.377  Sum_probs=49.6

Q ss_pred             CCCcccccccccCCCCc-------eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          273 VPADFRCPISLELMRNP-------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dP-------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      -++.+.||||++.+.+|       +.++|||+|+..||.+|+.. +.+||.|+.++...++.|+
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            35678999999999998       88999999999999999986 5699999999988777765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.14  E-value=0.00011  Score=84.07  Aligned_cols=252  Identities=8%  Similarity=0.018  Sum_probs=167.0

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +..++.+.+.|.+. ++.+|..|+.++..+...+++..     .+.++.|..+|.+.    |+.++..|+.+|..++.++
T Consensus       141 ~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~----d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          141 RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK----NHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC----CHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC----CHhHHHHHHHHHHHHHHhC
Confidence            34567788889888 99999999999999998776432     26788888889888    9999999999999998764


Q ss_pred             hhHHHHhcccCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-
Q 048793          450 ANKTRIMETEGALNGVIEVLRS--------------GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-  514 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~--------------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-  514 (683)
                      ........  ..++.++.+|.+              ..++-.+.....+|..++..+...   .  ...++.|..++.. 
T Consensus       211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~---~--~~~~~~L~~l~~~~  283 (618)
T 1w63_A          211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS---S--EAMNDILAQVATNT  283 (618)
T ss_dssp             HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHHHTS
T ss_pred             hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH---H--HHHHHHHHHHHhcc
Confidence            32211222  578888888864              125777888888888888654321   1  2344555555431 


Q ss_pred             -----CChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhcc-CchhHHHHHHHHHHcCCc-HHHHHHcCchHHHH
Q 048793          515 -----GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDV-LPEESVTILEAVVKRGGL-TAIVAAYNTIKKLC  587 (683)
Q Consensus       515 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~-~~~~~~~aL~~L~~l~~~-~e~~~~~g~v~~Lv  587 (683)
                           .+..+...|+.++.++...+.    +. ..++..|..+|.+ +++...-|+..|..++.. +..+.  .....++
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~--~~~~~i~  356 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ--RHRSTIV  356 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG--GGHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH--HHHHHHH
Confidence                 223566788888888754321    11 2456778887764 345555566666554432 22211  2345666


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          588 ILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       588 ~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ..+...+..+|..|..+|..++...+   +..      +++.|...+.+.+...|+.+...+..+..
T Consensus       357 ~~l~d~d~~Ir~~alelL~~l~~~~n---v~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          357 DCLKDLDVSIKRRAMELSFALVNGNN---IRG------MMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHCCSSS---THH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHccCCChhHHHHHHHHHHHHccccc---HHH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777788888888888888887432   122      23556666666777888777777777655

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.13  E-value=7.4e-05  Score=88.43  Aligned_cols=272  Identities=10%  Similarity=0.061  Sum_probs=174.4

Q ss_pred             hHHHHHHHhccCC-CHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          372 TASFLINKLATSQ-SMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       372 ~i~~Lv~~L~s~~-~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .++.|+..+.++. ++..+..++..|..++....  ...+..  ...++.+...+.++.  .+..++..|+.+|.++...
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTC--SCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHH
Confidence            4567778887653 67889999999999887532  111221  356777777777640  1478999999999987643


Q ss_pred             -chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          449 -EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       449 -~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                       ..+ ....... ..++.+...+... +.+.+..++.+|..+......  ...+.  ...++.++..+.+.++.++..|+
T Consensus       205 ~~~~~~~~~~~~-~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~v~~~al  280 (876)
T 1qgr_A          205 TKANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGI  280 (876)
T ss_dssp             CHHHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHhHHHHH-HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCCchHHHHHHH
Confidence             111 1111111 2566666666665 689999999999988764322  22221  26788888888877788899999


Q ss_pred             HHHHHhcCCcc-------------------hhHHH--HhcCchHHHHHHhccC--------chh---HHHHHHHHHHcCC
Q 048793          525 VAILNLAGDRE-------------------TVGRL--VERGIVEIVAEAMDVL--------PEE---SVTILEAVVKRGG  572 (683)
Q Consensus       525 ~aL~nLs~~~~-------------------n~~~i--v~aG~V~~Lv~lL~~~--------~~~---~~~aL~~L~~l~~  572 (683)
                      ..+.+++....                   ....+  .-...++.+++.|...        ...   +..++..|+...+
T Consensus       281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~  360 (876)
T 1qgr_A          281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE  360 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc
Confidence            99988875421                   00001  0124567777777521        112   3444555544322


Q ss_pred             cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793          573 LTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL  652 (683)
Q Consensus       573 ~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l  652 (683)
                      . ...  ...++.+...+.+.+++.|+.|+.+|..++...+.+.....+  .++++.|+..+.+.++.+|..|.+.|..+
T Consensus       361 ~-~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~  435 (876)
T 1qgr_A          361 D-DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRI  435 (876)
T ss_dssp             G-GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             H-hhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            1 111  022445555566778999999999999998765422233333  35789999999999999999999999999


Q ss_pred             Hhhh
Q 048793          653 RRWA  656 (683)
Q Consensus       653 ~~~~  656 (683)
                      .++.
T Consensus       436 ~~~~  439 (876)
T 1qgr_A          436 CELL  439 (876)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.11  E-value=9.5e-07  Score=72.05  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          274 PADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .+++.||||++.+.+||+++|||+ ||+.|+.+     ...||.|++++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            356789999999999999999999 99999964     3689999998754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.08  E-value=7.7e-07  Score=75.98  Aligned_cols=66  Identities=11%  Similarity=0.246  Sum_probs=47.6

Q ss_pred             CcccccccccCCCCceec---CCccccchhhHHHHHh----cCC---CCCCC--CCCc--cCCCCCcchHHHHHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVV---ATGQTYDRQSISLWIE----SGH---NTCPK--TGQT--LAHTNLVTNTALKNLIALWC  340 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~---~~g~ty~r~~I~~w~~----~g~---~~cP~--~~~~--l~~~~l~pn~~l~~~i~~~~  340 (683)
                      +.|.||||++.+.+|+++   +|||+||+.||++|+.    +|.   ..||.  |+..  +....+. +....++.+.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence            578999999999999876   7999999999999986    342   37999  9877  5443321 222244555554


Q ss_pred             H
Q 048793          341 R  341 (683)
Q Consensus       341 ~  341 (683)
                      .
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.00  E-value=5.4e-05  Score=89.61  Aligned_cols=270  Identities=11%  Similarity=0.063  Sum_probs=167.1

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCc-hhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDS-DSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~-~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++.+...|.+. ++..+..|+..|..++.... +.-... -.+++|.|+..|.+.    ++.++..|+++|.+++..-.
T Consensus       367 ~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~----~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          367 VLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP----SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS----SHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCc
Confidence            455666777777 89999999999999987653 211121 245899999999988    89999999999999985422


Q ss_pred             hH---HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch------------hhHHh-hhcccHHHHHHhhcC
Q 048793          451 NK---TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH------------RKTLG-RKTRVVKGLMDLVKG  514 (683)
Q Consensus       451 ~k---~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~------------~~~i~-~~~G~i~~Lv~lL~~  514 (683)
                      ..   ....  +..++.++..|.+  +..++..|+++|.+++..-..            ...+. .....++.|+.++..
T Consensus       441 ~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~  516 (876)
T 1qgr_A          441 EAAINDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR  516 (876)
T ss_dssp             GGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS
T ss_pred             hhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhC
Confidence            11   1111  1467778888765  378899999999999864220            00010 113578888888875


Q ss_pred             C---ChhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhcc----------Cch------hHHHHHHHHHHcCCc-
Q 048793          515 G---PTSSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDV----------LPE------ESVTILEAVVKRGGL-  573 (683)
Q Consensus       515 ~---~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~----------~~~------~~~~aL~~L~~l~~~-  573 (683)
                      .   +...+..+..+|..|..... .... .-...++.+++.+..          ..+      ....++..|..++.. 
T Consensus       517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~  595 (876)
T 1qgr_A          517 PDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV  595 (876)
T ss_dssp             CSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCcchhhHHHHHHHHHHHHHHHCchhhHH-HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            4   23566778888888766433 2222 223455666655542          111      123344444433211 


Q ss_pred             H-HHHHHc--CchHHHHHHHhcCC--hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcC-CHHHHHHHHH
Q 048793          574 T-AIVAAY--NTIKKLCILLREGS--DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESG-TARARRKAAA  647 (683)
Q Consensus       574 ~-e~~~~~--g~v~~Lv~lL~~~s--~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~-~~~~k~kA~~  647 (683)
                      . +.....  ..++.++.++...+  ...++.+..++..++...+.. ....+  ..+++.|...+.+. ++.++..|.+
T Consensus       596 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~  672 (876)
T 1qgr_A          596 QHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE-FLKYM--EAFKPFLGIGLKNYAEYQVCLAAVG  672 (876)
T ss_dssp             CHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG-GGGGH--HHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             ChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh-HHHHH--HHHHHHHHHHHcCcchHHHHHHHHH
Confidence            1 122111  22455666665543  468899999999988754332 12222  23678888888886 8899999998


Q ss_pred             HHHHHHhh
Q 048793          648 LLRILRRW  655 (683)
Q Consensus       648 lL~~l~~~  655 (683)
                      ++..+.+.
T Consensus       673 ~l~~l~~~  680 (876)
T 1qgr_A          673 LVGDLCRA  680 (876)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887653

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=4.1e-06  Score=69.34  Aligned_cols=48  Identities=23%  Similarity=0.423  Sum_probs=39.6

Q ss_pred             CcccccccccCCCC--------------ceec-CCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          275 ADFRCPISLELMRN--------------PVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       275 ~~f~CPis~~~m~d--------------Pv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      ++-.|+||++.|.+              ++.+ +|||.|.+.||.+|+.. +.+||.||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45669999999987              4444 59999999999999986 5699999988753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.97  E-value=4.5e-06  Score=65.79  Aligned_cols=48  Identities=21%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             CCcccccccccCCCCceec--CCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793          274 PADFRCPISLELMRNPVVV--ATGQT-YDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~--~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      +++..|+||++-.+|++++  ||||. ||..|+.+|+.. +..||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3567899999999999988  99999 899999999975 568999999864

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.96  E-value=0.00015  Score=85.49  Aligned_cols=276  Identities=7%  Similarity=0.019  Sum_probs=172.4

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh-H--HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDS-R--ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r--~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .++.|+..+.++.++..+..|+..+..+++.-... +  ... ....++.++..|.+.  ..+..++..|+.+|.++...
T Consensus       135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~--~~~~~vr~~al~~l~~~~~~  211 (861)
T 2bpt_A          135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQST--ETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHH
Confidence            56778888876436888999999999888753211 1  000 124567777777654  01578999999999886421


Q ss_pred             -chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhcccHHHHHHhhcCCChhHHHHHH
Q 048793          449 -EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKTRVVKGLMDLVKGGPTSSKRDAL  524 (683)
Q Consensus       449 -~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~  524 (683)
                       ..+ ....... ..++.|...+.++ +.+.|..++.+|..++.....  ...+.  ...++.+...+.+.++.++..|+
T Consensus       212 ~~~~~~~~~~~~-~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~  287 (861)
T 2bpt_A          212 IKNNMEREGERN-YLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTV  287 (861)
T ss_dssp             CHHHHTSHHHHH-HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHccChhHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHH
Confidence             111 0000111 3566667777666 799999999999988764321  12221  15677777888888888999999


Q ss_pred             HHHHHhcCCcchh--------------HHHH---hcCchHHHHHHhccC--------chhHHHHHHHHHHcCCcHHHHHH
Q 048793          525 VAILNLAGDRETV--------------GRLV---ERGIVEIVAEAMDVL--------PEESVTILEAVVKRGGLTAIVAA  579 (683)
Q Consensus       525 ~aL~nLs~~~~n~--------------~~iv---~aG~V~~Lv~lL~~~--------~~~~~~aL~~L~~l~~~~e~~~~  579 (683)
                      .++..++......              ..+.   -..+++.|+..|.+.        ......+...|..++........
T Consensus       288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~  367 (861)
T 2bpt_A          288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL  367 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH
Confidence            9999887643110              0011   145678888888631        12233344444333211100000


Q ss_pred             cCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          580 YNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       580 ~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      ...++.+...+.+.+.+.|+.|+.+|..++...+.......+  ..+++.|...+.+.++.+|..|.++|..+..+.
T Consensus       368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  442 (861)
T 2bpt_A          368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence            012344445556778899999999999998754423333333  257888888899999999999999998888764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.96  E-value=3.5e-05  Score=95.36  Aligned_cols=268  Identities=12%  Similarity=0.083  Sum_probs=176.4

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .+..|+..+.+. |.+.|..|...|.+..+.....-..-.....++.|+..|.+.    +..+|..|+.+|.+++..-..
T Consensus         7 ~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~----~~~vR~~A~~~L~~l~~~~~~   81 (1230)
T 1u6g_C            7 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVKE   81 (1230)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCCH
Confidence            466788888888 999999999999876654311000011235678899999887    999999999999998754222


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-------hHHhhhcccHHHHHHhhc-CCChhHHHHH
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-------KTLGRKTRVVKGLMDLVK-GGPTSSKRDA  523 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-------~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A  523 (683)
                        ....  ..++.|+..|.+. +..+|..|+.+|..++..-...       ... . ...+|.|+..+. +++...+..|
T Consensus        82 --~~~~--~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~-~~llp~L~~~l~~~~~~~~~~~a  154 (1230)
T 1u6g_C           82 --YQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANV-C-KKITGRLTSAIAKQEDVSVQLEA  154 (1230)
T ss_dssp             --HHHH--HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHH-H-HHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             --HHHH--HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHH-H-HHHHHHHHHHHcCCCchHHHHHH
Confidence              1112  3567777777776 5788999999998887532211       111 1 468999999998 4678899999


Q ss_pred             HHHHHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCC-hHHHHH
Q 048793          524 LVAILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGS-DTSRES  600 (683)
Q Consensus       524 ~~aL~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s-~~~ke~  600 (683)
                      +.+|..++..... ... .-...++.|+..|.+. ......|+..|..++.......-...++.++..|.... ...+..
T Consensus       155 l~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~  233 (1230)
T 1u6g_C          155 LDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRT  233 (1230)
T ss_dssp             HHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHH
Confidence            9999998853211 100 1123455666666543 34466666666665532211111123677777776543 456777


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      |+.+|..++...+.. ....  -..+++.+...+.+.++.+|+.|...+..+.+.
T Consensus       234 a~~~l~~l~~~~~~~-~~~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          234 YIQCIAAISRQAGHR-IGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHHHHSSGG-GTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhHHH-HHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            888888888765542 1111  246889999999888999999999888887764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.94  E-value=4.7e-06  Score=65.42  Aligned_cols=47  Identities=13%  Similarity=0.182  Sum_probs=41.7

Q ss_pred             CcccccccccCCCCceec--CCccc-cchhhHHHHHhcCCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRNPVVV--ATGQT-YDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~--~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      .+..|+||++-.+|++++  ||||. ||..|+.+|+.. +..||.|++++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            345799999999999988  99998 999999999976 478999999864

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.91  E-value=0.00014  Score=79.02  Aligned_cols=262  Identities=13%  Similarity=0.070  Sum_probs=167.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch-hH-
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA-NK-  452 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~-~k-  452 (683)
                      .++..+.++ +.+.|..|-..|..+...+        ..|.++.|+.+|.+.  ..+..++..|+..|.|+..... .. 
T Consensus         5 ~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~--~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            5 TILEKTVSP-DRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANP--GNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHTTCS-CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHhccccchHHH
Confidence            345555667 8899999999888765421        236777888888764  1157899999999999853210 00 


Q ss_pred             H------HHhc---ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCC--ChhHHH
Q 048793          453 T------RIME---TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGG--PTSSKR  521 (683)
Q Consensus       453 ~------~I~~---~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~--~~~~~~  521 (683)
                      .      ..+.   .+..-..|+..|.+. +..+ ..++.+|..++..+...   ..-.+.++.|+..+.++  ++..+.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHHH
Confidence            0      0000   002334466777766 4556 77888888887654221   11257899999999988  788999


Q ss_pred             HHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC---chhHHHHHHHHHHcCCc-HHHHHH---cC-chHHHHHHHhc
Q 048793          522 DALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL---PEESVTILEAVVKRGGL-TAIVAA---YN-TIKKLCILLRE  592 (683)
Q Consensus       522 ~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~~l~~~-~e~~~~---~g-~v~~Lv~lL~~  592 (683)
                      .|+.+|..++..- .....-.-..+++.++..|.+.   ......|+..+..+... .+....   .. .++.+...+..
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999998632 1111111124677888888754   33456666666653321 111100   01 14445455566


Q ss_pred             CChHHHHHHHHHHHHHHhcCCchHHHHHHhcC-CcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          593 GSDTSRESAAATLVTICRKGGSEMVADIAAVP-GIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       593 ~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~-G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .++..+..++.+|..++...+.. ....+  . ++++.+...+.+.++.++..|...+..+.+.
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQY-METYM--GPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGG-CTTTT--TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            78899999999999998765432 11212  2 6788888888888999999999988888764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.89  E-value=3.4e-06  Score=76.24  Aligned_cols=120  Identities=16%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      ..++.|+..|.+. ++..|..|++.|..+..            ..++.|+.+|.+.    ++.++..|+.+|.++..   
T Consensus        12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~----~~~vR~~A~~aL~~~~~---   71 (131)
T 1te4_A           12 SGLVPRGSHMADE-NKWVRRDVSTALSRMGD------------EAFEPLLESLSNE----DWRIRGAAAWIIGNFQD---   71 (131)
T ss_dssp             ---------CCSS-CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS----CHHHHHHHHHHHGGGCS---
T ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC----CHHHHHHHHHHHHhcCC---
Confidence            3456788889888 88888888887765521            1369999999988    99999999999988752   


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                             . .+++.|+..|++. ++.+|..|+++|..+.          . .++++.|+.+|++.++.++..|+.+|.+|
T Consensus        72 -------~-~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -------E-RAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -------H-HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -------H-HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                   2 5689999999887 7999999999999874          2 46799999999988888999999988654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.89  E-value=0.0009  Score=65.53  Aligned_cols=226  Identities=15%  Similarity=0.141  Sum_probs=151.5

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch-hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSD-SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~-nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..+.+..|..+|... |+..+.+|+..|..+.+.-+. -+..+. ...+|.++.++.+.    |..+.-.|+.+|..|-.
T Consensus        31 ~e~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~----dEkval~A~r~L~~LLe  104 (265)
T 3b2a_A           31 DKRALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQE----NEKVTIKALRALGYLVK  104 (265)
T ss_dssp             CHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCST----THHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhcc----chhHHHHHHHHHHHHHc
Confidence            455788899999888 999999999999999998432 233333 35799999999999    99999999999988865


Q ss_pred             Cc-hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          448 LE-ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       448 ~~-~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      +. -.......   .+..++.+++++ +.-.+..|+..|..|......       .+.+..|..++.+.+.+.+..|+++
T Consensus       105 ~vpL~~~~y~K---l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~  173 (265)
T 3b2a_A          105 DVPMGSKTFLK---AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCL  173 (265)
T ss_dssp             TCCBCHHHHHH---HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CCCCCHHHHHH---HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHH
Confidence            42 22333322   355688888888 688999999999999333222       3556678888888889999999999


Q ss_pred             HHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793          527 ILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV  606 (683)
Q Consensus       527 L~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~  606 (683)
                      |.|++...++..-+  .++                                     +..+-.+|++.++..++.|..+|.
T Consensus       174 L~eia~~S~D~~i~--~~I-------------------------------------~~eI~elL~~eD~~l~e~aLd~Le  214 (265)
T 3b2a_A          174 FLNMLNSSADSGHL--TLI-------------------------------------LDEIPSLLQNDNEFIVELALDVLE  214 (265)
T ss_dssp             HHHHGGGCSSCCCG--GGT-------------------------------------TTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred             HHHhhcccCCHHHH--HHH-------------------------------------HHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99998755432111  011                                     122334455555566666666666


Q ss_pred             HHHhcCC-chHHHHHHhcCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 048793          607 TICRKGG-SEMVADIAAVPGIERVIWELM-ESGTARARRKAAALLRILR  653 (683)
Q Consensus       607 ~L~~~~~-~~~~~~~~~~~G~~~~L~~Ll-~~~~~~~k~kA~~lL~~l~  653 (683)
                      .+.+..= ++..-.+   .++....-.|. ..|.|..+.||...-..+-
T Consensus       215 ~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le  260 (265)
T 3b2a_A          215 KALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIRLKAKKVSDLID  260 (265)
T ss_dssp             HHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            5554311 1122222   13344444555 6678888888877665543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.80  E-value=0.00022  Score=88.26  Aligned_cols=226  Identities=10%  Similarity=0.074  Sum_probs=157.6

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ...++.|++.|.+. ++..|..|+.+|..++.....  ..  -...++.|+..|.++    +..++..|+.+|..++..-
T Consensus        47 ~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~~--~~--~~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l  117 (1230)
T 1u6g_C           47 RKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKE--YQ--VETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGEL  117 (1230)
T ss_dssp             HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCH--HH--HHHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCCH--HH--HHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhC
Confidence            34677788889877 999999999999999876543  11  134678888888887    8889999999998886431


Q ss_pred             hh-------HHHHhcccCcHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCChhH
Q 048793          450 AN-------KTRIMETEGALNGVIEVLRS-GATWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPTSS  519 (683)
Q Consensus       450 ~~-------k~~I~~~~G~I~~Lv~lL~~-~~~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~~~  519 (683)
                      ..       ......  ..++.|+..+.+ + +...+..|+.+|..++....  ....+   ...++.|+..|.+.++.+
T Consensus       118 ~~~~~~~~~~~~~~~--~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~v  191 (1230)
T 1u6g_C          118 PPASSGSALAANVCK--KITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAV  191 (1230)
T ss_dssp             C-----CCTHHHHHH--HHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHH
T ss_pred             CCcccccchHHHHHH--HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHH
Confidence            11       112222  578889999984 5 68999999999999875211  11111   457888899998888889


Q ss_pred             HHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-----hhHHHHHHHHHHcCCcHHHHHH-cCchHHHHHHHhcC
Q 048793          520 KRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-----EESVTILEAVVKRGGLTAIVAA-YNTIKKLCILLREG  593 (683)
Q Consensus       520 ~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-----~~~~~aL~~L~~l~~~~e~~~~-~g~v~~Lv~lL~~~  593 (683)
                      ++.|+.+|..++...++..   -...++.|++.|....     ..+..+++.++...+.. .... ...++.+...+...
T Consensus       192 R~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~l~~~ll~~l~d~  267 (1230)
T 1u6g_C          192 RKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR-IGEYLEKIIPLVVKFCNVD  267 (1230)
T ss_dssp             HHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG-GTTSCTTHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhcCC
Confidence            9999999999987644321   2246788888876321     22666777666544321 1111 13367777778778


Q ss_pred             ChHHHHHHHHHHHHHHhcCCc
Q 048793          594 SDTSRESAAATLVTICRKGGS  614 (683)
Q Consensus       594 s~~~ke~A~~aL~~L~~~~~~  614 (683)
                      ++..|+.|..++..++...+.
T Consensus       268 ~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          268 DDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             CTTTHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHChH
Confidence            889999999999999886554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.79  E-value=0.0015  Score=74.74  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhh--CCCCCCCChhhHHHHHHHHHhcccC
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL--GPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL--~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      -.+..+.+.|.++ ++..+..|++.|.++..  ++    +.+ ..+|.+..+|  .+.    ++.++..|+.++.++...
T Consensus       111 L~iN~l~kDl~~~-n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~----~~~VRK~A~~al~kl~~~  178 (621)
T 2vgl_A          111 LINNAIKNDLASR-NPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDT----MDSVKQSAALCLLRLYRT  178 (621)
T ss_dssp             HHHHHHHHHHHSC-CHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSS----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHh
Confidence            3466777888888 99999999999998853  21    332 4678889999  777    999999999999998753


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      ..  . ++..++.++.+.++|... ++.++.+|+.+|..++..+
T Consensus       179 ~p--~-~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          179 SP--D-LVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             CG--G-GCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC
T ss_pred             Ch--h-hcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC
Confidence            22  1 222237999999999766 7999999999999998654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.78  E-value=5.2e-06  Score=87.62  Aligned_cols=46  Identities=11%  Similarity=0.273  Sum_probs=41.4

Q ss_pred             CCCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          273 VPADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      +.+++.||||++.+.+||++||||+ ||+.|+..|     ..||.|+.++..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            3467899999999999999999999 999999988     689999988653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.75  E-value=5.5e-06  Score=68.21  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             CcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          275 ADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      ++..|+||++.+.|||++||||. ||+.|+..|     ..||.|++++..
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence            55679999999999999999999 999999877     389999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.74  E-value=2e-05  Score=68.60  Aligned_cols=47  Identities=15%  Similarity=0.350  Sum_probs=39.8

Q ss_pred             CcccccccccCCCCc------------------eecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRNP------------------VVVATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~dP------------------v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      ++-.|+||++.|.++                  +..+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            345799999999887                  34699999999999999986 789999998753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.73  E-value=0.0017  Score=77.12  Aligned_cols=267  Identities=12%  Similarity=0.103  Sum_probs=181.7

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      +.+..|.+.+... ...  +.|+..+..++.....  .-+.+ -.+.+|.++..+...    +..++..|-.++..+...
T Consensus        54 ~~~~~~~~~~~~k-~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk----~~~v~~aa~~~~~~~~~~  125 (986)
T 2iw3_A           54 HFFGELAKGIKDK-KTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNK----DKEIQSVASETLISIVNA  125 (986)
T ss_dssp             HHHHHHHHHHTSH-HHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCS----SHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcc-CCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHh
Confidence            3455566666543 122  7888888888855431  11111 126788888888887    788888887777666421


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                       +.+.  +  . ..+|.|+..|.++.....+..|+.+|..|+..........- ...||.+-+.+-+..+++++.|..++
T Consensus       126 ~~~~a--~--~-~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~  199 (986)
T 2iw3_A          126 VNPVA--I--K-ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAM  199 (986)
T ss_dssp             SCGGG--H--H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CCHHH--H--H-HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHH
Confidence             2221  1  2 57899999998764699999999999999875432222222 56788888888777789999999999


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHH--HcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVA--AYNTIKKLCILLREGSDTSRESAAATL  605 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~~~ke~A~~aL  605 (683)
                      ..+|..-+|+..   ..-||.||+.+.+ ++.+-+++..|.....-.+.-.  -.--+|.|.+-|...+...++.++-+.
T Consensus       200 ~~~~~~~~n~d~---~~~~~~~~~~~~~-p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~  275 (986)
T 2iw3_A          200 TKATETVDNKDI---ERFIPSLIQCIAD-PTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVII  275 (986)
T ss_dssp             HHHGGGCCCTTT---GGGHHHHHHHHHC-TTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             HHHHhcCCCcch---hhhHHHHHHHhcC-hhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEE
Confidence            999986666532   3458899999984 5668888888876442211110  001256666666667888999999999


Q ss_pred             HHHHhcCCchH-HHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhhc
Q 048793          606 VTICRKGGSEM-VADIAAVPGIERVIWELMES-GTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       606 ~~L~~~~~~~~-~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      -|||+--.+.. +...+  ...+|-|...... ..|++|+.|...+..|.+...
T Consensus       276 ~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          276 DNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             HHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            99999766542 33332  5666666654433 589999999999999988644

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.67  E-value=0.00057  Score=70.84  Aligned_cols=152  Identities=12%  Similarity=0.104  Sum_probs=120.3

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      +..+++.|.++ +.+.++.++..|..+-.++..--..+++.|++..|+.+....    +...|.+++++|.+|-.+.+.-
T Consensus       120 a~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm  194 (339)
T 3dad_A          120 VNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGM  194 (339)
T ss_dssp             HHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccc
Confidence            44577888887 899999999999984444555778888899999999999988    8999999999999999998888


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcc---------cHHHHHHhhc---CCChhH
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTR---------VVKGLMDLVK---GGPTSS  519 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G---------~i~~Lv~lL~---~~~~~~  519 (683)
                      ..|+.++..|..|+.++.+. +..+.+.|..+|..++...+ +...+.....         -+..|+.+|.   .++.+.
T Consensus       195 ~gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el  273 (339)
T 3dad_A          195 LGVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL  273 (339)
T ss_dssp             HHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred             cchhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence            77886668999999999875 78999999999999987765 3333222111         2668999997   566777


Q ss_pred             HHHHHHHHHHh
Q 048793          520 KRDALVAILNL  530 (683)
Q Consensus       520 ~~~A~~aL~nL  530 (683)
                      +.+|.+.|-.+
T Consensus       274 q~~amtLIN~l  284 (339)
T 3dad_A          274 LVYTVTLINKT  284 (339)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777666544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.58  E-value=0.00034  Score=69.86  Aligned_cols=176  Identities=12%  Similarity=0.116  Sum_probs=124.0

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccCch-hH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILEA-NK  452 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~~-~k  452 (683)
                      +.+.+.+. +...|..|+..|..+....+.. ...+  ...++.|..+|. +.    +..++..|+.+|..|+..-. .-
T Consensus        20 l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~----~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           20 FYDKLEEK-KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS----NVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHhhhccC-CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHHhhhH
Confidence            66778887 9999999999999998763211 0011  245777888884 77    89999999999999985321 11


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG  532 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  532 (683)
                      ...+.  ..++.|+..+... +..+|..|..+|..+.....    +   ...++.|...|.+.++.++..++..|..+..
T Consensus        93 ~~~~~--~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           93 SNYAS--ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNKNPSVKSETALFIARALT  162 (242)
T ss_dssp             HHHHH--HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHH--HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            12222  3788888888877 69999999999999976432    1   3478889999999999999999999999644


Q ss_pred             Ccc-hh--HHHHhcCchHHHHHHhccC-chh---HHHHHHHHHH
Q 048793          533 DRE-TV--GRLVERGIVEIVAEAMDVL-PEE---SVTILEAVVK  569 (683)
Q Consensus       533 ~~~-n~--~~iv~aG~V~~Lv~lL~~~-~~~---~~~aL~~L~~  569 (683)
                      ... ..  .... ...++.|+.+|.+. .+.   +..+++.++.
T Consensus       163 ~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          163 RTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            322 11  1122 25788899999754 334   4444444444

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=6.9e-05  Score=59.66  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             CCCcccccccccCCCCceecCCccc-cchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          273 VPADFRCPISLELMRNPVVVATGQT-YDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~~~g~t-y~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      -.++..|+||++-..|+|++||||. ||..|++.     ...||.|++++..
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            3467889999999999999999999 99999983     4789999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.47  E-value=4.1e-05  Score=69.03  Aligned_cols=117  Identities=14%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          413 AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       413 ~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      .+.++.|+.+|.++    ++.++..|+.+|.++..            ..++.|+..|++. ++.+|..|+++|.++..  
T Consensus        11 ~~~~~~l~~~L~~~----~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--   71 (131)
T 1te4_A           11 SSGLVPRGSHMADE----NKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--   71 (131)
T ss_dssp             ----------CCSS----CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--
T ss_pred             cccHHHHHHHhcCC----CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--
Confidence            46788899999988    88899888888876531            2368899999876 79999999999987642  


Q ss_pred             chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHH
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAV  567 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L  567 (683)
                               .++++.|+.+|.++++.++..|+++|.++..          ..+++.|+++|.+. ......|...|
T Consensus        72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A           72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                     3578999999998889999999999998752          34678888888753 33444555444

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=0.00011  Score=60.38  Aligned_cols=51  Identities=14%  Similarity=0.244  Sum_probs=42.2

Q ss_pred             CCCcccccccccCC--CCceecCCc-----cccchhhHHHHHhc-CCCCCCCCCCccCC
Q 048793          273 VPADFRCPISLELM--RNPVVVATG-----QTYDRQSISLWIES-GHNTCPKTGQTLAH  323 (683)
Q Consensus       273 ~p~~f~CPis~~~m--~dPv~~~~g-----~ty~r~~I~~w~~~-g~~~cP~~~~~l~~  323 (683)
                      ..++-.|+||++-+  .+|++.||+     |.|-+.||++|+.. +..+||.|+.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            34567899999766  578888996     99999999999986 34799999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.38  E-value=0.0023  Score=63.74  Aligned_cols=145  Identities=15%  Similarity=0.079  Sum_probs=109.4

Q ss_pred             hHHHHHHHhc-cCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLA-TSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~-s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++.|...|. .. +..++..|+.+|..++..-...-... -...+|.|+..+++.    +..+++.|..+|.++.....
T Consensus        57 i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~-~~~ilp~ll~~l~d~----~~~vr~~a~~aL~~~~~~~~  130 (242)
T 2qk2_A           57 LVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY-ASACVPSLLEKFKEK----KPNVVTALREAIDAIYASTS  130 (242)
T ss_dssp             HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHcCC
Confidence            4566778884 67 89999999999999986432111111 134789999999988    89999999999999875432


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cch---hhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAH---RKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~---~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      .       +..++.|...|++. ++.+|..++..|..+... ...   ...+   ...+|.|+.+|.+.+.+++..|..+
T Consensus       131 ~-------~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~~~~VR~~A~~~  199 (242)
T 2qk2_A          131 L-------EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEPDPTVRDSSAEA  199 (242)
T ss_dssp             H-------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             H-------HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            1       13677788888887 799999999999996433 211   2222   4689999999999899999999999


Q ss_pred             HHHhcCC
Q 048793          527 ILNLAGD  533 (683)
Q Consensus       527 L~nLs~~  533 (683)
                      |..++..
T Consensus       200 l~~l~~~  206 (242)
T 2qk2_A          200 LGTLIKL  206 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.35  E-value=0.0068  Score=69.29  Aligned_cols=248  Identities=13%  Similarity=0.111  Sum_probs=163.4

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhcccCc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .++..|..+|.++ +++.|.-|+..|..++...+. ...+  ....+.++..|. +.    |..++..|+.+|..++ ++
T Consensus       329 ~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~----d~~Ir~~aL~lL~~l~-~~  399 (621)
T 2vgl_A          329 RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTER----DVSVRQRAVDLLYAMC-DR  399 (621)
T ss_dssp             HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCC----CHHHHHHHHHHHHHHC-CH
T ss_pred             HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCC----CHhHHHHHHHHHHHHc-Ch
Confidence            4567788888877 899999999999999876642 2223  345777888888 77    9999999999999997 34


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      +|-..|      +..|...+... +.+.+..++..+..++..-.     ....-.+..|++++..+...+...++..+..
T Consensus       400 ~Nv~~I------v~eL~~yl~~~-d~~~~~~~v~~I~~la~k~~-----~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~  467 (621)
T 2vgl_A          400 SNAQQI------VAEMLSYLETA-DYSIREEIVLKVAILAEKYA-----VDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ  467 (621)
T ss_dssp             HHHHHH------HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHC-----SSTHHHHHHHHHHHHHHGGGSCSHHHHHHHH
T ss_pred             hhHHHH------HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            554444      44577788776 78999999999998874211     1113467788888876544455666667776


Q ss_pred             hcCC-cchhHHHHhcCchHHHHHHhccCc---hhHHHHHHHHHHcCCcHHHHHHcC-c-----hHHHHHHHhcCChHHHH
Q 048793          530 LAGD-RETVGRLVERGIVEIVAEAMDVLP---EESVTILEAVVKRGGLTAIVAAYN-T-----IKKLCILLREGSDTSRE  599 (683)
Q Consensus       530 Ls~~-~~n~~~iv~aG~V~~Lv~lL~~~~---~~~~~aL~~L~~l~~~~e~~~~~g-~-----v~~Lv~lL~~~s~~~ke  599 (683)
                      +... ++-+..     ++..|++.+.+..   .....++++|...+.   ...... .     +..+.+.+...++.+|.
T Consensus       468 ii~~~~~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~---~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~  539 (621)
T 2vgl_A          468 IVINRDDVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGN---LIAGDPRSSPLIQFNLLHSKFHLCSVPTRA  539 (621)
T ss_dssp             HHGGGCSCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH---HHHSSTTSCHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHhCChhHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHH---HhcccCCCCHHHHHHHHHHHhccCCHHHHH
Confidence            6543 333433     3556777776432   123344455554331   122111 1     22344444567899999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHHh
Q 048793          600 SAAATLVTICRKGGSEMVADIAAVPGIERVIWELME--SGTARARRKAAALLRILRR  654 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~--~~~~~~k~kA~~lL~~l~~  654 (683)
                      .++.++..++...++ . ...     +...|.....  +.++++|.+|...+++++.
T Consensus       540 ~~Lta~~Kl~~~~p~-~-~~~-----i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~  589 (621)
T 2vgl_A          540 LLLSTYIKFVNLFPE-V-KAT-----IQDVLRSDSQLKNADVELQQRAVEYLRLSTV  589 (621)
T ss_dssp             HHHHHHHHHHHHCGG-G-HHH-----HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHChH-H-HHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHcc
Confidence            999999888875543 1 111     1233333344  7799999999999999975

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.23  E-value=0.11  Score=56.32  Aligned_cols=217  Identities=14%  Similarity=0.125  Sum_probs=141.8

Q ss_pred             hhhHHHHHHHHHhcccCchhHHHHhcccC-cHHHHHHHHhc----------------CCCHHHHHHHHHHHHHhhcCcch
Q 048793          432 PNLQVNAVTTILNLSILEANKTRIMETEG-ALNGVIEVLRS----------------GATWEAKGNAAATIFSLSGVHAH  494 (683)
Q Consensus       432 ~~~qe~A~~aL~nLs~~~~~k~~I~~~~G-~I~~Lv~lL~~----------------~~~~~~~~~Aa~~L~~Ls~~~~~  494 (683)
                      ...+.-++.+|..|...++.|..+.+..| .++.++.+++.                +.+.+..-.++-+++-|+..++.
T Consensus       182 ~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~  261 (480)
T 1ho8_A          182 MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF  261 (480)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred             CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence            34456678888888888899988876533 47777766541                11255678889999999999887


Q ss_pred             hhHHhhhcccH--HHHHHhhcCCC-hhHHHHHHHHHHHhcCCc-----chhHHH-HhcCchHHHHHHhcc----CchhHH
Q 048793          495 RKTLGRKTRVV--KGLMDLVKGGP-TSSKRDALVAILNLAGDR-----ETVGRL-VERGIVEIVAEAMDV----LPEESV  561 (683)
Q Consensus       495 ~~~i~~~~G~i--~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~-----~n~~~i-v~aG~V~~Lv~lL~~----~~~~~~  561 (683)
                      ...+.. .+.+  +.|+.+++... ..+.+-++.+|.||....     .....+ +..++ ..+++.|..    +++. .
T Consensus       262 ~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl-~  338 (480)
T 1ho8_A          262 ANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL-R  338 (480)
T ss_dssp             HHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH-H
T ss_pred             HHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH-H
Confidence            777766 5543  67888887654 568899999999998754     122323 33444 556666652    2222 2


Q ss_pred             HHHHHH----H----HcCCcHHHHHH------------------------c-----CchHHHHHHHhc----------CC
Q 048793          562 TILEAV----V----KRGGLTAIVAA------------------------Y-----NTIKKLCILLRE----------GS  594 (683)
Q Consensus       562 ~aL~~L----~----~l~~~~e~~~~------------------------~-----g~v~~Lv~lL~~----------~s  594 (683)
                      +-+..|    .    .+++-.+-..+                        .     ..+..|+++|..          .+
T Consensus       339 edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d  418 (480)
T 1ho8_A          339 QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  418 (480)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCC
Confidence            222222    1    12211111111                        1     114567777863          24


Q ss_pred             hHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          595 DTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       595 ~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      +.+..-|+.=+..++++.+.  .+.++.+.|+=..+..|+.+.++++|..|...++.+=
T Consensus       419 ~~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          419 KIIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            55667777778888888775  3556777899999999999999999999988877653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0091  Score=60.00  Aligned_cols=187  Identities=8%  Similarity=0.069  Sum_probs=122.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-hhcC-cchhhHHhhhcccHHHHHHhh-cCCChhHHHHHHHHHHHhcCCcchhHHHH
Q 048793          465 VIEVLRSGATWEAKGNAAATIFS-LSGV-HAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAGDRETVGRLV  541 (683)
Q Consensus       465 Lv~lL~~~~~~~~~~~Aa~~L~~-Ls~~-~~~~~~i~~~~G~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv  541 (683)
                      +...+.+. ++..|..|...|.. +... .+.....+.....+..|...+ ++.+..++..|+.+|..|+..-.+ ..+-
T Consensus        21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~   98 (249)
T 2qk1_A           21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFS   98 (249)
T ss_dssp             HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSC
T ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-cccc
Confidence            44556666 79999999999999 8642 221110112135678888888 677888999999999999853220 1121


Q ss_pred             -h--cCchHHHHHHhccCc-hh---HHHHHHHHHHcCCcHHHHH--HcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Q 048793          542 -E--RGIVEIVAEAMDVLP-EE---SVTILEAVVKRGGLTAIVA--AYNTIKKLCILLREGSDTSRESAAATLVTICRKG  612 (683)
Q Consensus       542 -~--aG~V~~Lv~lL~~~~-~~---~~~aL~~L~~l~~~~e~~~--~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~  612 (683)
                       .  .-++|.+++.+.+.. .+   +..|+..++..+. +....  -...++.|...|.+.++.+|+.++.+|..++...
T Consensus        99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A           99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence             1  236888999988643 33   3344444443321 00000  0012456667778889999999999999998766


Q ss_pred             Cc--hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          613 GS--EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       613 ~~--~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +.  ......+ ...+++.|..++.+.++.+|..|...+..+.+.
T Consensus       178 ~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          178 KDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            53  2222211 257899999999999999999999999888764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.19  E-value=5.4e-05  Score=66.88  Aligned_cols=44  Identities=16%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             ccccccccCCCCcee------------------cCCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          277 FRCPISLELMRNPVV------------------VATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       277 f~CPis~~~m~dPv~------------------~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      -.|+||++.|.+|..                  .+|||.|.+.||.+|+.. +.+||.|++++
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~  110 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW  110 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence            479999999987532                  489999999999999987 67999999874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.12  E-value=0.02  Score=56.14  Aligned_cols=147  Identities=15%  Similarity=0.088  Sum_probs=117.3

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +...+.+++.+++. |..+..+|+++|+.+-.+.+-....+..  ++..|..++.++    +.-.+++|+..|..+..-.
T Consensus        74 e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~----~~il~~eaae~Lgklkv~~  146 (265)
T 3b2a_A           74 ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESP----DDMMRIETIDVLSKLQPLE  146 (265)
T ss_dssp             HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSC----CHHHHHHHHHHHHHCCBSC
T ss_pred             HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCC----CchHHHHHHHHhCcCCccc
Confidence            45678889999888 9999999999999999888766666654  356789999988    9999999999999984322


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ..       ++++..+..++.+. +.+.+..|.++|.+++...+....+   .+.+..+-.+|++.++..++.|+.+|..
T Consensus       147 ~~-------~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~  215 (265)
T 3b2a_A          147 DS-------KLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEK  215 (265)
T ss_dssp             CC-------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             ch-------HHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            22       24566788888655 8999999999999999866554444   3455567788888999999999999999


Q ss_pred             hcCCc
Q 048793          530 LAGDR  534 (683)
Q Consensus       530 Ls~~~  534 (683)
                      +...+
T Consensus       216 ils~p  220 (265)
T 3b2a_A          216 ALSFP  220 (265)
T ss_dssp             HTTSC
T ss_pred             HHcCc
Confidence            98764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.94  E-value=0.046  Score=64.40  Aligned_cols=233  Identities=12%  Similarity=0.030  Sum_probs=145.1

Q ss_pred             hHHHHHHHhccCCC--------HHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHH
Q 048793          372 TASFLINKLATSQS--------MEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTIL  443 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~--------~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~  443 (683)
                      ++..|...|.+. +        +.++..|+-.|......+.  +     ..+++.|..+|...    +..+.+.|+.+|.
T Consensus       430 ~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~--~-----eev~e~L~~~L~dd----~~~~~~~AalALG  497 (963)
T 4ady_A          430 TTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSA--N-----IEVYEALKEVLYND----SATSGEAAALGMG  497 (963)
T ss_dssp             HHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCC--C-----HHHHHHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCC--C-----HHHHHHHHHHHhcC----CHHHHHHHHHHHh
Confidence            355566666554 3        4566667667766543332  1     13567788888776    6666666766766


Q ss_pred             hcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHH
Q 048793          444 NLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRD  522 (683)
Q Consensus       444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~  522 (683)
                      .+-.+..|.       .++..|+..+.+..+...++.++-.|..+...        . ...++.+++.|.. .++-++..
T Consensus       498 li~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRyg  561 (963)
T 4ady_A          498 LCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYG  561 (963)
T ss_dssp             HHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHH
T ss_pred             hhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHH
Confidence            553333222       24566777665544678888888888776543        3 5678888888865 45567677


Q ss_pred             HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC--chhHHHHHHHHHHcC-CcHHHHHHcCchHHHHHHH-hcCChHHH
Q 048793          523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL--PEESVTILEAVVKRG-GLTAIVAAYNTIKKLCILL-REGSDTSR  598 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~-~~~e~~~~~g~v~~Lv~lL-~~~s~~~k  598 (683)
                      ++.++.--+....|..      +|..|++.+.++  ......|+..|..+. +.+      ..++.++.+| ..+++.+|
T Consensus       562 aa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------e~v~rlv~~L~~~~d~~VR  629 (963)
T 4ady_A          562 GAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------TTVPRIVQLLSKSHNAHVR  629 (963)
T ss_dssp             HHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------SSHHHHTTTGGGCSCHHHH
T ss_pred             HHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------HHHHHHHHHHHhcCCHHHH
Confidence            7777765555555543      345566666533  234555565565543 332      2356666644 56889999


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          599 ESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       599 e~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      ..|+.+|..+|...+..         .++..|..++.+.++.+++.|...|..+-
T Consensus       630 ~gAalALGli~aGn~~~---------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          630 CGTAFALGIACAGKGLQ---------SAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             HHHHHHHHHHTSSSCCH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCCCcH---------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            99999999998866542         22456777777777778777776655543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.85  E-value=0.058  Score=55.89  Aligned_cols=185  Identities=10%  Similarity=0.033  Sum_probs=131.5

Q ss_pred             ChhhHHHHHHHHHh-cccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHH
Q 048793          431 LPNLQVNAVTTILN-LSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLM  509 (683)
Q Consensus       431 d~~~qe~A~~aL~n-Ls~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv  509 (683)
                      +...+..++.-|.. ++.+.+.-...+.. +|+..|+.+...+ +...+..+..+|..|-.....-.-++.....|.-|+
T Consensus       131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly  208 (339)
T 3dad_A          131 SGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY  208 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence            56677778777777 66677888888887 8999999999988 799999999999999988777766665578999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHH
Q 048793          510 DLVKGGPTSSKRDALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCI  588 (683)
Q Consensus       510 ~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~  588 (683)
                      .++.+....+.+.|+..|..++.+.+ |...+.+                    ++....       .....--...|+.
T Consensus       209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~--------------------av~~v~-------~~~~~~p~~~Lv~  261 (339)
T 3dad_A          209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIR--------------------AVNSVA-------STTGAPPWANLVS  261 (339)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH--------------------HHHHHH-------HHHCCCTTHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHccCcccchHHHH--------------------HHHHhh-------hccCCCcHHHHHH
Confidence            99997777888999999999988765 3332221                    111100       0011112567777


Q ss_pred             HHh---cCChHHHHHHHHHHHHHHhcCCc-h---HHHHHHhcCCcHHHHHHHhhcC--CHHHHHH
Q 048793          589 LLR---EGSDTSRESAAATLVTICRKGGS-E---MVADIAAVPGIERVIWELMESG--TARARRK  644 (683)
Q Consensus       589 lL~---~~s~~~ke~A~~aL~~L~~~~~~-~---~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~k  644 (683)
                      +|.   .++...+.+|...+-.+..+.++ +   .....+.+.|+-..+...+...  .+..+++
T Consensus       262 ~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          262 ILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            776   56777888888877777665553 2   3344467778888787765554  3455554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.014  Score=58.66  Aligned_cols=152  Identities=10%  Similarity=0.049  Sum_probs=108.2

Q ss_pred             hHHHHHHHh-ccCCCHHHHHHHHHHHHhhhccCc--hhH-HHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          372 TASFLINKL-ATSQSMEAANDAVYELRSLSKTDS--DSR-ACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       372 ~i~~Lv~~L-~s~~~~~~~~~A~~~L~~La~~~~--~nr-~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      .+..|...| +.. +..++..|+.+|..++.+-.  .-. ...  .-.+|.++..++..    ...+++.+..+|..++.
T Consensus        61 ~~~~L~~~l~~D~-n~~v~~~A~~al~~la~~l~~~~f~~~y~--~~llp~ll~~l~dk----k~~V~~aa~~al~~i~~  133 (249)
T 2qk1_A           61 LLGIYGHIIQKDA-NIQAVALAAQSVELICDKLKTPGFSKDYV--SLVFTPLLDRTKEK----KPSVIEAIRKALLTICK  133 (249)
T ss_dssp             HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHCTTTSCHHHH--HHHHHHHHHGGGCC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhcccccccHHHH--HHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHH
Confidence            355677788 455 88999999999999985321  111 111  23789999999888    88899999888888864


Q ss_pred             CchhHHHHhc-ccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHH-hhh-cccHHHHHHhhcCCChhHHHHH
Q 048793          448 LEANKTRIME-TEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTL-GRK-TRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       448 ~~~~k~~I~~-~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i-~~~-~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      .-+- ..... -+..++.|...|++. ++.+|+.++.+|..+....... ..+ -.- ...+|.|..++.+.++.++..|
T Consensus       134 ~~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA  211 (249)
T 2qk1_A          134 YYDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG  211 (249)
T ss_dssp             HSCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred             Hccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            3110 00110 114677888889888 7999999999999887643321 221 122 4789999999999889999999


Q ss_pred             HHHHHHhcC
Q 048793          524 LVAILNLAG  532 (683)
Q Consensus       524 ~~aL~nLs~  532 (683)
                      ..+|..++.
T Consensus       212 ~~~l~~i~~  220 (249)
T 2qk1_A          212 FESFAILIK  220 (249)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988865

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.40  E-value=0.043  Score=57.88  Aligned_cols=263  Identities=12%  Similarity=0.083  Sum_probs=138.6

Q ss_pred             cchHHHHHHHHHHHHHcCCCCCCCCcccccccccchhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh
Q 048793          327 VTNTALKNLIALWCREQRIPFDYAASSEKVNGVVTNKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDS  406 (683)
Q Consensus       327 ~pn~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n  406 (683)
                      .+|..+|+++=-+.....-. +.                 + .-.++..|.+.+.++ ++-.+-.|++.|+.+...+-  
T Consensus        79 s~d~~lKrLvYLyl~~~~~~-~~-----------------e-~iLv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m--  136 (355)
T 3tjz_B           79 SNDPTLRRMCYLTIKEMSCI-AE-----------------D-VIIVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTM--  136 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT-SS-----------------C-GGGGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTT--
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HH-----------------H-HHHHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHH--
Confidence            36788899876665543211 00                 0 114567788999999 99999999999999865442  


Q ss_pred             HHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793          407 RACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF  486 (683)
Q Consensus       407 r~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~  486 (683)
                          . ....+.+...|.+.    ++.++..|+.+...|......   +++  ++++.+-+++.+. ++.+..+|..+|+
T Consensus       137 ----~-~~l~~~lk~~L~d~----~pyVRk~A~l~~~kL~~~~pe---~v~--~~~~~l~~ll~d~-n~~V~~~Al~lL~  201 (355)
T 3tjz_B          137 ----L-QAIERYMKQAIVDK----VPSVSSSALVSSLHLLKCSFD---VVK--RWVNEAQEAASSD-NIMVQYHALGLLY  201 (355)
T ss_dssp             ----H-HHHHHHHHHHHTCS----SHHHHHHHHHHHHHHTTTCHH---HHH--TTHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhccCHH---HHH--HHHHHHHHHhcCC-CccHHHHHHHHHH
Confidence                1 23566788888888    999999999999888654322   333  6889999999877 7889999999999


Q ss_pred             HhhcCcchhhHHhhhcccHHHHHHhhcCCC---hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHH
Q 048793          487 SLSGVHAHRKTLGRKTRVVKGLMDLVKGGP---TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVT  562 (683)
Q Consensus       487 ~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~  562 (683)
                      .+...+.         .++..|+.-+..+.   +-+.-.-+..+..++..++.   -.....++.|...|... +.+.-+
T Consensus       202 ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyE  269 (355)
T 3tjz_B          202 HVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYE  269 (355)
T ss_dssp             HHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHH
T ss_pred             HHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHH
Confidence            9987541         14555666555432   22333333333333332200   01123445555556543 344667


Q ss_pred             HHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHH
Q 048793          563 ILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARAR  642 (683)
Q Consensus       563 aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k  642 (683)
                      |+.++..+........ ..++..|..++.+.++..|-.|+..|..+....+... .      ..-.-+..++.+++..+.
T Consensus       270 a~k~I~~l~~~~~~~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v-~------~~n~~ie~li~d~n~sI~  341 (355)
T 3tjz_B          270 AASAIVNLPGCSAKEL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV-T------ACNLDLENLVTDANRSIA  341 (355)
T ss_dssp             HHHHHTC------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------
T ss_pred             HHHHHHhccCCCHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH-H------HHHHHHHHHccCCcHhHH
Confidence            7777766654322211 2346677778888899999999999888887655321 1      122335566666666555


Q ss_pred             HHHH
Q 048793          643 RKAA  646 (683)
Q Consensus       643 ~kA~  646 (683)
                      .-|.
T Consensus       342 t~Ai  345 (355)
T 3tjz_B          342 TLAI  345 (355)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            4443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.37  E-value=0.037  Score=58.46  Aligned_cols=241  Identities=10%  Similarity=0.014  Sum_probs=147.9

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTR  454 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~  454 (683)
                      ..++++.+. |.+.++-..-.+..+++..++.   |   =++..|.+=+.++    ++-++-.|+.+|+++...+     
T Consensus        72 ~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~----N~~iR~lALRtL~~I~~~~-----  135 (355)
T 3tjz_B           72 AMTKLFQSN-DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGK----EDSYRGPAVRALCQITDST-----  135 (355)
T ss_dssp             HHHGGGGCC-CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSS----CHHHHHHHHHHHHHHCCTT-----
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCC----cHhHHHHHHHHHhcCCCHH-----
Confidence            356777887 8888888877888888764321   1   2566777778888    9999999999999986443     


Q ss_pred             HhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCc
Q 048793          455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDR  534 (683)
Q Consensus       455 I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  534 (683)
                      +++  ...+.+.+.|.+. ++-+|..|+-+...|......  . +  .+.+..+-+++.+.++.+.-+|+.+|+.++.++
T Consensus       136 m~~--~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe--~-v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          136 MLQ--AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD--V-V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             THH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH--H-H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH--H-H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence            222  2556677777777 799999999999988765432  2 2  368999999999999999999999999998764


Q ss_pred             chhHHHHhcCchHHHHHHhccCc---hh-HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          535 ETVGRLVERGIVEIVAEAMDVLP---EE-SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       535 ~n~~~iv~aG~V~~Lv~lL~~~~---~~-~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      ..        ++..|+..+..+.   +. ....+..+..++...+......-++.|...|++.++.+.-.|+.++..+..
T Consensus       208 ~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          208 RL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             HH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred             hH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence            21        3444555554321   11 222233232332221111112234445555678889999999999877755


Q ss_pred             cCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          611 KGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       611 ~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ....     .+  ..++..|..++.+.++.+|=-|...|..+..
T Consensus       280 ~~~~-----~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          280 CSAK-----EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             ---------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred             CCHH-----HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            2211     11  2345667778888888888777666655554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.13  E-value=0.93  Score=42.80  Aligned_cols=212  Identities=16%  Similarity=0.167  Sum_probs=140.8

Q ss_pred             CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      ..+..++.+|...    -..+|.+|+.++.+++.. ++-.    +  -.+..|+-+++.+......+..+.++.-++.. 
T Consensus        32 ~~l~~lI~~LDDD----lwtV~kNAl~vi~~i~~~~~el~----e--pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-  100 (253)
T 2db0_A           32 SVLKKLIELLDDD----LWTVVKNAISIIMVIAKTREDLY----E--PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-  100 (253)
T ss_dssp             HHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCGGGH----H--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhccH----HHHHHHhHHHHHHHHHHHhHHHH----H--HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence            5677889999887    778999999999998754 2221    1  23455666666554577777788888877753 


Q ss_pred             chhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHHcC
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAVVKRG  571 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~l~  571 (683)
                        +..++  .+.||.|..=.+-|++..+-+...+|..+......    .-.+++.-+..++.+.+ .....||..+..++
T Consensus       101 --~Pe~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          101 --KPELV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             --CHHHH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             --CHHHH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence              23333  35777777777888999999999999888663221    11244556777777432 22555666666665


Q ss_pred             CcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 048793          572 GLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRI  651 (683)
Q Consensus       572 ~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~  651 (683)
                      .+. .....-..|-|..+|..++.-++..|+.+|.+++..++  ..+.++      ..-++=+.+.+.-++++...-|..
T Consensus       173 en~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii------~~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          173 ENS-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV------IKRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             TTT-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHH------HHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccC-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHH------HHHHHHhcCcHHHHHHHHHHHHHH
Confidence            443 12222346777777888999999999999999998653  355443      223334556677777777766655


Q ss_pred             HH
Q 048793          652 LR  653 (683)
Q Consensus       652 l~  653 (683)
                      +-
T Consensus       244 l~  245 (253)
T 2db0_A          244 LL  245 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=95.89  E-value=0.23  Score=53.94  Aligned_cols=231  Identities=11%  Similarity=0.068  Sum_probs=137.9

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC--cHHHHHHhhCC----CC---------CCCChhhHHHHHH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG--AIALLARHLGP----DT---------ASRLPNLQVNAVT  440 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G--~Ip~Lv~lL~s----~~---------~~~d~~~qe~A~~  440 (683)
                      +...|...++.+.+--++..|..+.... +.|..+.+.+  .+|.++.++..    ..         ......++-+++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            4455554214455566788888877754 5898887653  47777654431    10         0013567889999


Q ss_pred             HHHhcccCchhHHHHhcccCcH--HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-----h-hhHHhhhcccHHHHHHhh
Q 048793          441 TILNLSILEANKTRIMETEGAL--NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-----H-RKTLGRKTRVVKGLMDLV  512 (683)
Q Consensus       441 aL~nLs~~~~~k~~I~~~~G~I--~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-----~-~~~i~~~~G~i~~Lv~lL  512 (683)
                      ++.-|+.+++....+... +.+  ..|+.+++......+.+-+.++|.||.....     . +..+.. .++ ++++..|
T Consensus       251 ~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L  327 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence            999999888877777665 543  6778888876568888999999999987641     1 112322 234 5666666


Q ss_pred             cCC---ChhHHHHHHHHH-------HHhc--------------C----------CcchhHHHHhc--CchHHHHHHhccC
Q 048793          513 KGG---PTSSKRDALVAI-------LNLA--------------G----------DRETVGRLVER--GIVEIVAEAMDVL  556 (683)
Q Consensus       513 ~~~---~~~~~~~A~~aL-------~nLs--------------~----------~~~n~~~iv~a--G~V~~Lv~lL~~~  556 (683)
                      ...   +++..++--...       ..|+              .          ..+|..++-+.  -++..|+++|.+.
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            543   333333222111       1122              0          12356666553  4678899999731


Q ss_pred             c-------hhHHHHHHHHHH--------cCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 048793          557 P-------EESVTILEAVVK--------RGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR  610 (683)
Q Consensus       557 ~-------~~~~~aL~~L~~--------l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~  610 (683)
                      .       +.-..++++-++        .......+...|+=..++++|.+.++.+|.+|..++-.+-.
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            0       111222332222        11223334455777778888888999999999888765543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.69  E-value=0.01  Score=47.66  Aligned_cols=46  Identities=15%  Similarity=0.291  Sum_probs=36.7

Q ss_pred             ccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793          277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLA  322 (683)
Q Consensus       277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~  322 (683)
                      -.|+||.+++..=..- .|||.|=..||.+||.. +..+||.|+++..
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            4699999887643322 79999999999999975 3479999998765

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=95.45  E-value=0.012  Score=45.22  Aligned_cols=48  Identities=23%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             CcccccccccCCCCceecCCcc-----ccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRNPVVVATGQ-----TYDRQSISLWIES-GHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~-----ty~r~~I~~w~~~-g~~~cP~~~~~l~  322 (683)
                      +.-.|.||++-..+|.+.||..     -|=+.|+++|+.. |+.+||.|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3456999988778888788653     6889999999974 6789999998764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.35  E-value=0.28  Score=58.72  Aligned_cols=254  Identities=8%  Similarity=0.015  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC------CCCCCCChhhHHHHHHHHHhcccCchhHHH-Hh---
Q 048793          387 EAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG------PDTASRLPNLQVNAVTTILNLSILEANKTR-IM---  456 (683)
Q Consensus       387 ~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~------s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~-I~---  456 (683)
                      ..+..|...|..++....   ..+.. -.++.+-..|.      +.    +...++.|+.++..++.....+.. +.   
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~----~w~~reaal~algaia~~~~~~~~~~~~~~  447 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSK----NWKFKDLYIYLFTALAINGNITNAGVSSTN  447 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcch----hHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence            345667777777776542   12211 13333434444      34    778899999999998753211110 00   


Q ss_pred             cccCcHHH----HHHHHhcC--CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          457 ETEGALNG----VIEVLRSG--ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       457 ~~~G~I~~----Lv~lL~~~--~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      ......+.    ++..|.+.  .++-+|..|+++|..++..- ....+   ...++.++..|.+.+..++..|+.||.++
T Consensus       448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~  523 (960)
T 1wa5_C          448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKI  523 (960)
T ss_dssp             TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            00012222    33334443  25889999999999998753 22222   45788999988887888999999999999


Q ss_pred             cCCcc---------hhHHHHh--cCchHHHHHHhccC---------chhHHHHHHHHHHcCCcHHHHHH-cCchHHHHHH
Q 048793          531 AGDRE---------TVGRLVE--RGIVEIVAEAMDVL---------PEESVTILEAVVKRGGLTAIVAA-YNTIKKLCIL  589 (683)
Q Consensus       531 s~~~~---------n~~~iv~--aG~V~~Lv~lL~~~---------~~~~~~aL~~L~~l~~~~e~~~~-~g~v~~Lv~l  589 (683)
                      +...+         .+..+..  ...++.|+.++...         .+....++..++...+. +.... ..-++.|...
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-~~~p~~~~l~~~L~~~  602 (960)
T 1wa5_C          524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-SIQPLFPQLLAQFIEI  602 (960)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHHH
T ss_pred             HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            87422         2333322  24455555666542         22244455444332211 00000 0112334444


Q ss_pred             Hhc-----CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          590 LRE-----GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       590 L~~-----~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +..     ..+..+..+..+|..++...+......+  ...++|.+..++........+.+-.++..+-+.
T Consensus       603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~--~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL--VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH--HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence            332     2445556678888888776333333332  235678888887776656666666666666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.31  E-value=0.2  Score=59.58  Aligned_cols=258  Identities=11%  Similarity=0.066  Sum_probs=156.3

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      +..+++.+..+ +...+..|+..|..+...+...+  ....+.+..|.+.+...    ...  +.|+.++..|+......
T Consensus        16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k----~~~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A           16 LEELFQKLSVA-TADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDK----KTA--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHHTTC-CTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSH----HHH--HHHHHHHHHHTCTTTCC
T ss_pred             HHHHHhhcccc-chhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhcc----CCH--HHHHHHHHHHHHhcCCC
Confidence            33466667665 55666778888887766432111  11237888888888876    333  89999999998543221


Q ss_pred             --HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-cchhhHHhhhcccHHHHHHhhcCC-ChhHHHHHHHHHH
Q 048793          453 --TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV-HAHRKTLGRKTRVVKGLMDLVKGG-PTSSKRDALVAIL  528 (683)
Q Consensus       453 --~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~-~~~~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~  528 (683)
                        ..-.-- +.++.+...+... ...+|..|..++..+... ..+..     ..++|.|+..|.+. .-+.+..|+.+|.
T Consensus        87 ~~~e~~~~-~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~  159 (986)
T 2iw3_A           87 PSVEPYIV-QLVPAICTNAGNK-DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFS  159 (986)
T ss_dssp             TTTHHHHH-TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcccchH-HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              111111 3566666665544 477888877777777543 22222     35789999988765 4689999999999


Q ss_pred             HhcCCcchhHHHHh--cCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793          529 NLAGDRETVGRLVE--RGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATL  605 (683)
Q Consensus       529 nLs~~~~n~~~iv~--aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL  605 (683)
                      .|+...  ...+..  -.+||.+-+.+-+. +++...|...+..+|+.-....-...+|.|++.|.+.+.  ...++..|
T Consensus       160 ~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l  235 (986)
T 2iw3_A          160 AMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLL  235 (986)
T ss_dssp             HHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred             HHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHh
Confidence            998754  233322  46788888888764 455555555555444322222223568999998875532  33444443


Q ss_pred             HHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          606 VTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       606 ~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .+-. +-.+ +-...+  .=.+|+|..=+...+..+|||++-++.+|.+
T Consensus       236 ~~~t-fv~~-v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          236 GATT-FVAE-VTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             TTCC-CCSC-CCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred             hcCe-eEee-ecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence            2211 1111 111111  0125555555666788999999999999998

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.17  E-value=3.1  Score=49.16  Aligned_cols=233  Identities=15%  Similarity=0.083  Sum_probs=131.6

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANK  452 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k  452 (683)
                      ++.|...|... +...+..|+..|..+--... |.      .++..|+..+.++.   +..++..++.+|..+...    
T Consensus       474 ~e~L~~~L~dd-~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g----  538 (963)
T 4ady_A          474 YEALKEVLYND-SATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQ---HGNITRGLAVGLALINYG----  538 (963)
T ss_dssp             HHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT----
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC----
Confidence            45566666555 44444455555554422221 22      23445555443321   556777777777655432    


Q ss_pred             HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc-CCChhHHHHHHHHHHHhc
Q 048793          453 TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK-GGPTSSKRDALVAILNLA  531 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs  531 (683)
                          . +..++.+++.|....++-+|..++.++.--...-.|       ..+|..|+..+. +.+..++..|+.+|..+.
T Consensus       539 ----~-~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~  606 (963)
T 4ady_A          539 ----R-QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL  606 (963)
T ss_dssp             ----C-GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             ----C-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence                2 256788888888655677777666666533222222       235666666654 445678899999999887


Q ss_pred             CCcchhHHHHhcCchHHHHHHhccC--chh---HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHH
Q 048793          532 GDRETVGRLVERGIVEIVAEAMDVL--PEE---SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLV  606 (683)
Q Consensus       532 ~~~~n~~~iv~aG~V~~Lv~lL~~~--~~~---~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~  606 (683)
                      ..++        ..++.++++|...  +..   +..|++.++.-.++.+      .+..|..++...++.++.+|+.+|.
T Consensus       607 ~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          607 LRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALS  672 (963)
T ss_dssp             SSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             cCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHH
Confidence            6543        3467777766532  333   3344444432112222      3567777778889999999999998


Q ss_pred             HHHhcCCch---HHHHHHhcCCcHHHHHHHhhc--CCHHHHHHHHHHHHHH
Q 048793          607 TICRKGGSE---MVADIAAVPGIERVIWELMES--GTARARRKAAALLRIL  652 (683)
Q Consensus       607 ~L~~~~~~~---~~~~~~~~~G~~~~L~~Ll~~--~~~~~k~kA~~lL~~l  652 (683)
                      .+.....+.   .+.      ++...|.....+  .++.++-.|.-..-++
T Consensus       673 ~Ig~gtnna~~~rva------~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          673 MILIQQTEKLNPQVA------DINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHSTTCCTTTCTTHH------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCccccchHHH------HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            887654432   122      234445555543  3555665555444444

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=95.14  E-value=0.015  Score=48.92  Aligned_cols=46  Identities=11%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             cccccccCCCCce-ecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          278 RCPISLELMRNPV-VVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       278 ~CPis~~~m~dPv-~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      .||+|.-+...-. ++||+|.||-.|+..|...+..+||.|+.+...
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888877666555 779999999999999998888999999988654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.79  E-value=0.16  Score=55.78  Aligned_cols=245  Identities=10%  Similarity=0.077  Sum_probs=152.0

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCch--hHHHHHHhCcHHHHHHhh--CCC---CCC-CChhhHHHHHHHHH
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSD--SRACIAEAGAIALLARHL--GPD---TAS-RLPNLQVNAVTTIL  443 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~--nr~~i~~~G~Ip~Lv~lL--~s~---~~~-~d~~~qe~A~~aL~  443 (683)
                      ..+.|+..|-++ ..+.|..|+-.||.+.+....  .|..-......-.|+.+|  ..-   +.+ --.-++|.|+.+|.
T Consensus       175 fcE~L~~DLFdp-~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSY-EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            445677778788 899999999999998876531  111000002222233222  221   110 02458999999998


Q ss_pred             hcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          444 NLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      .+ .+-+..     . .++..++..+... ..+++..+.-.|.++   .   ..+..-.+++++++.-|.+.+++++..|
T Consensus       254 aL-~hLp~e-----~-~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~---DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          254 RI-YPLIGP-----N-DIIEQLVGFLDSG-DWQVQFSGLIALGYL---K---EFVEDKDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HH-TTTSCS-----C-CHHHHHTTGGGCS-CHHHHHHHHHHHHHT---G---GGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HH-HhCChh-----H-HHHHHHHhhcCCC-CeeehhhhHHHHHHH---H---HHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence            88 652222     2 4566666656666 699999999999999   1   1111126789999999999999999999


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc---hhHHHHHHHHHHcCCcHHH-HHHcCchHHHHHHHhcCChHHHH
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP---EESVTILEAVVKRGGLTAI-VAAYNTIKKLCILLREGSDTSRE  599 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~---~~~~~aL~~L~~l~~~~e~-~~~~g~v~~Lv~lL~~~s~~~ke  599 (683)
                      +.+|.-++ .++...     +++..|.+.|.+..   ..+...+..|+.+++.+.. .....-+|.|...+++.-..+|.
T Consensus       320 AetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~  393 (800)
T 3oc3_A          320 AELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRT  393 (800)
T ss_dssp             HHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred             HHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHH
Confidence            99999998 222211     23344555555322   2244555555554433211 00113467777778889999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHhcCCcHHHH-HHHhhcCCHHHHHHHHHHHH
Q 048793          600 SAAATLVTICRKGGSEMVADIAAVPGIERVI-WELMESGTARARRKAAALLR  650 (683)
Q Consensus       600 ~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L-~~Ll~~~~~~~k~kA~~lL~  650 (683)
                      .++.+|..+.   ..          .++.++ ..++-..++.+++.+..+.+
T Consensus       394 AVL~TL~tfL---~~----------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          394 SILNMVKNLS---EE----------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHTTTCC---CH----------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hh----------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999887666   11          123333 35777888888888877765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.01  E-value=0.55  Score=46.61  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhcccCch--hHHHHhcccCcHHH
Q 048793          388 AANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSILEA--NKTRIMETEGALNG  464 (683)
Q Consensus       388 ~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~~~~--~k~~I~~~~G~I~~  464 (683)
                      -..+|+.-|..+|.+ ++.|..+.+++..-.|-.+|...... ....++-.++.+++.|.+.++  .-.-+... +.||.
T Consensus        72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t-Eiipl  149 (268)
T 2fv2_A           72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTT-EIIPL  149 (268)
T ss_dssp             HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT-THHHH
T ss_pred             HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhh-hHHHH
Confidence            347788888888875 46999999999887888888766221 123577778888888886543  23334466 89999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcc-------cHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcch
Q 048793          465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTR-------VVKGLMD-LVKGGPTSSKRDALVAILNLAGDRET  536 (683)
Q Consensus       465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G-------~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n  536 (683)
                      .++.++.| +.-.|..|+-++..+-.++.+-.-+.....       ++..+|. +..+++++..++.+++-..||.++..
T Consensus       150 CLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          150 CLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            99999999 799999999999998888766555544333       3333332 33456788899999999999998877


Q ss_pred             hHHHH
Q 048793          537 VGRLV  541 (683)
Q Consensus       537 ~~~iv  541 (683)
                      +..+-
T Consensus       229 r~aL~  233 (268)
T 2fv2_A          229 REALR  233 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=93.93  E-value=0.013  Score=60.49  Aligned_cols=48  Identities=19%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             cccccccccCCCC----cee----cCCccccchhhHHHHHhcC----------CCCCCCCCCccCC
Q 048793          276 DFRCPISLELMRN----PVV----VATGQTYDRQSISLWIESG----------HNTCPKTGQTLAH  323 (683)
Q Consensus       276 ~f~CPis~~~m~d----Pv~----~~~g~ty~r~~I~~w~~~g----------~~~cP~~~~~l~~  323 (683)
                      .--|+||...+.+    |..    ..|||.|-..||.+|+...          +.+||.|+++++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4469999988887    432    3699999999999999741          1479999998753

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.041  Score=57.62  Aligned_cols=63  Identities=19%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             CcccccccccCCCCceec-CCccc--cchhhHHHHHh-cCCCCCCCCCCccCCCCCcchHHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVV-ATGQT--YDRQSISLWIE-SGHNTCPKTGQTLAHTNLVTNTALKNLIA  337 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~w~~-~g~~~cP~~~~~l~~~~l~pn~~l~~~i~  337 (683)
                      -.+.||||+..|..|+-- .|.|.  ||...+-+... .+...||+|++.+...+|....-+.+.+.
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~  314 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ  314 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence            458999999999999954 89998  88877766654 35678999999998888887766655544

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=92.96  E-value=6.3  Score=37.26  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=135.4

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhC-CCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLG-PDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~-s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      .+..+..++..|..+ -.-+|.+|+..|..+++.-++-...+     +..|+.+++ ++    ....-.....+++.++.
T Consensus        30 d~~~l~~lI~~LDDD-lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksE----aIpltqeIa~a~G~la~   99 (253)
T 2db0_A           30 DESVLKKLIELLDDD-LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSE----AIPLTQEIAKAFGQMAK   99 (253)
T ss_dssp             CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCC----SHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccH-HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcc----cCchHHHHHHHHhHHHH
Confidence            355677889999877 78899999999999998877554433     334555554 33    44443345567777763


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      -   +..++.  +.+|.|..=.+-| ++.++.+-..+|..++...  -..+   .+++.-+..||.+.+..-+-.   +|
T Consensus       100 i---~Pe~v~--~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~---~~v~rdi~smltskd~~Dkl~---aL  165 (253)
T 2db0_A          100 E---KPELVK--SMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLM---ASIVRDFMSMLSSKNREDKLT---AL  165 (253)
T ss_dssp             H---CHHHHH--HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHH---HHHHHHHHHHTSCSSHHHHHH---HH
T ss_pred             h---CHHHHH--hhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHH---HHHHHHHHHHhcCCChHHHHH---HH
Confidence            2   223333  3566666666678 7999999999999887643  2222   346777888998777444444   44


Q ss_pred             HHhcCCcchhHHHHhcCchHHHHHHhccCchh-HHHHHHHHHHcCC-cHHHHHHcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793          528 LNLAGDRETVGRLVERGIVEIVAEAMDVLPEE-SVTILEAVVKRGG-LTAIVAAYNTIKKLCILLREGSDTSRESAAATL  605 (683)
Q Consensus       528 ~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~-~~~aL~~L~~l~~-~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL  605 (683)
                      -.++.-.+|.-+-+ .-.+|.|..+|.+.++. ...|+..|.+++. ++..+..   +...+.-+...|..++......|
T Consensus       166 nFi~alGen~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki---i~~kl~e~~D~S~lv~~~V~egL  241 (253)
T 2db0_A          166 NFIEAMGENSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV---VIKRLEELNDTSSLVNKTVKEGI  241 (253)
T ss_dssp             HHHHTCCTTTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH---HHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH---HHHHHHHhcCcHHHHHHHHHHHH
Confidence            44454455554443 23578888888876665 6667777776664 3433321   23333445567777777777777


Q ss_pred             HHHHh
Q 048793          606 VTICR  610 (683)
Q Consensus       606 ~~L~~  610 (683)
                      ..|..
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=92.67  E-value=0.88  Score=45.77  Aligned_cols=184  Identities=12%  Similarity=0.101  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCcc---hhhH-HhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcCCcc---h-
Q 048793          465 VIEVLRSGATWEAKGNAAATIFSLSGVHA---HRKT-LGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAGDRE---T-  536 (683)
Q Consensus       465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~---~~~~-i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---n-  536 (683)
                      |-+-|.+. +...|..|...|..+.....   .... +......++.+-..+.+.+..+...++.+|..++..-.   + 
T Consensus        14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            44566666 68999999988877653211   1111 11112345566678888888899999999988865321   1 


Q ss_pred             hH--HHHhcCchHHHHHH-hccCch-hHHHHHHHHHHc---CCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048793          537 VG--RLVERGIVEIVAEA-MDVLPE-ESVTILEAVVKR---GGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTIC  609 (683)
Q Consensus       537 ~~--~iv~aG~V~~Lv~l-L~~~~~-~~~~aL~~L~~l---~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~  609 (683)
                      ..  ...-..+++.|++- |.+... ....++..+..+   +...+.     .++.+...+.+.+|+++..++..|..+.
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            12  22334678888875 654433 344555544332   221111     1234444567789999998888887775


Q ss_pred             hcCCchH--HHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          610 RKGGSEM--VADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       610 ~~~~~~~--~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      ...+...  ....+  ..+++.+..++.+.++.+|..|..++-.+-+|-
T Consensus       168 ~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          168 AAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            4322111  11111  134667778899999999999999998887754

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=92.09  E-value=0.13  Score=53.76  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=50.6

Q ss_pred             CCcccccccccCCCCceec-CCccc--cchhhHHHHHh-cCCCCCCCCCCccCCCCCcchHHHHHHHH
Q 048793          274 PADFRCPISLELMRNPVVV-ATGQT--YDRQSISLWIE-SGHNTCPKTGQTLAHTNLVTNTALKNLIA  337 (683)
Q Consensus       274 p~~f~CPis~~~m~dPv~~-~~g~t--y~r~~I~~w~~-~g~~~cP~~~~~l~~~~l~pn~~l~~~i~  337 (683)
                      .-.+.||||+..|..|+-- .|.|.  ||...+-+... .+...||+|++.+...+|..+.-+.+.+.
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~  280 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN  280 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence            3467999999999999954 89988  88877777665 35678999999998888887766655544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.03  E-value=4  Score=40.02  Aligned_cols=116  Identities=14%  Similarity=0.031  Sum_probs=76.3

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCCCC----C---CCChhhHHHHHHHHHhccc
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGPDT----A---SRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s~~----~---~~d~~~qe~A~~aL~nLs~  447 (683)
                      .++.|+++...+...+-+..|+..-..++.. -..+ ..||+..|+.+|..-.    .   ..+...+..++.+|..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            3455555423333333445555433433322 2223 3678888888875310    0   1145678888999998887


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA  493 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~  493 (683)
                      +..+...+...++++..|+..|.+. ++.++..++.+|..+|..++
T Consensus        84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~  128 (233)
T 2f31_A           84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQ  128 (233)
T ss_dssp             SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSS
T ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCC
Confidence            7777788888778999999999877 69999999999988887654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.89  E-value=1  Score=46.38  Aligned_cols=149  Identities=14%  Similarity=0.057  Sum_probs=90.6

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh--CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA--GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~--G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      +...+.+..++..+.-+++.+.|+-.+. ..|..+...  -+++.+...+.+.    +..++..++++++|++.......
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~----nknl~iA~ATl~~NlAv~~~~~~  226 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGS----NKNIHIALATLALNYSVCFHKDH  226 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSC----CHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHhhcC
Confidence            3344433225667888999999987755 477777653  4555566666555    88999999999999986311100


Q ss_pred             HHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          454 RIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       454 ~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ..-.....+..+..+++...+.|+...+.-+|.+|...+.....+...-|+-..+-++.....+.-...++..|.+
T Consensus       227 ~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          227 NIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            0000112455566667665578999999999999987765555555434444433344433233333455555544

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=91.58  E-value=1  Score=45.21  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=95.4

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhccCch---hHHH--HHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          374 SFLINKLATSQSMEAANDAVYELRSLSKTDSD---SRAC--IAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       374 ~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~---nr~~--i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      +.+-..+... +..++..++..|..++.....   .+..  ..-...+|.|+. .|.+.    ...++..|..++..+..
T Consensus        58 ~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~  132 (278)
T 4ffb_C           58 TLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCG  132 (278)
T ss_dssp             HHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHH
Confidence            3444566666 899999999999888754321   1221  222457888885 57777    88899999888877653


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-----hhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-----HRKTLGRKTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-----~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                      ......      -+++.++..+++. ++.++..++..|..+...-.     .+..+   ..+++.+..+|.+.++.++..
T Consensus       133 ~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~~~~VR~a  202 (278)
T 4ffb_C          133 LDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHGDRNVRSQ  202 (278)
T ss_dssp             TSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCSSHHHHHH
T ss_pred             hcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCCcHHHHHH
Confidence            221111      1344455566666 79999988888887654211     11111   235667888889999999999


Q ss_pred             HHHHHHHhcCC
Q 048793          523 ALVAILNLAGD  533 (683)
Q Consensus       523 A~~aL~nLs~~  533 (683)
                      |..++..+-.+
T Consensus       203 A~~l~~~ly~~  213 (278)
T 4ffb_C          203 TMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.56  E-value=4.6  Score=42.79  Aligned_cols=174  Identities=16%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCC----CC---CCCChhhHHHHHHHHHhccc
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGP----DT---ASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s----~~---~~~d~~~qe~A~~aL~nLs~  447 (683)
                      .+..|.++...+.....+..|+..-...+.. -..++ .+|+..|+.+|..    +.   ...+...+..++.+|..+..
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN  149 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN  149 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence            4555655423333334555666544444322 23344 6788899988842    10   01256788889999999887


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--h-hhHH----------hhhcccHHHHHHhhcC
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--H-RKTL----------GRKTRVVKGLMDLVKG  514 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~~G~i~~Lv~lL~~  514 (683)
                      +..+...+...+.+|..|+..|.+. ++.++..+..+|..+|..++  + ...+          ++ ..-...+|..|.+
T Consensus       150 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~~  227 (383)
T 3eg5_B          150 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKS  227 (383)
T ss_dssp             SHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTST
T ss_pred             chhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHHc
Confidence            8778888888889999999999877 69999999999998887653  2 2222          22 3457778888886


Q ss_pred             C-ChhHHHHHHHHHHH-hcCCcch-------hHHHHhcCchHHHHHHhc
Q 048793          515 G-PTSSKRDALVAILN-LAGDRET-------VGRLVERGIVEIVAEAMD  554 (683)
Q Consensus       515 ~-~~~~~~~A~~aL~n-Ls~~~~n-------~~~iv~aG~V~~Lv~lL~  554 (683)
                      + +.+.+. ++..|.| |....++       |..+...|..+.+-. |.
T Consensus       228 ~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr  274 (383)
T 3eg5_B          228 GTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LR  274 (383)
T ss_dssp             TSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HT
T ss_pred             cCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hh
Confidence            4 334444 4444444 4444332       334455676665555 54

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=90.47  E-value=8.3  Score=38.22  Aligned_cols=203  Identities=15%  Similarity=0.122  Sum_probs=123.7

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHh-------hCCCCC-CCChhhHHHHHHHHH
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARH-------LGPDTA-SRLPNLQVNAVTTIL  443 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~l-------L~s~~~-~~d~~~qe~A~~aL~  443 (683)
                      +..|+..|.   +++.++.|+.+|..--..-++---.+=. -|.+..|+.=       |..+.- .....=..+|++.|.
T Consensus         5 i~qli~~L~---~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            5 IYQWINELS---SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHTS---STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc---CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            334555554   4556788777765532222222222223 3777776532       222100 001122356777777


Q ss_pred             hcccCchhHHHHhcccCcHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCCh
Q 048793          444 NLSILEANKTRIMETEGALNGVIEVLRSGAT----WEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPT  517 (683)
Q Consensus       444 nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~----~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~  517 (683)
                      -++.|++.|....++ ...--|..+|+....    .-.|-.+.+++..|...++  .-.-+.. .+.||..++.+..|+.
T Consensus        82 cvAshpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~Gse  159 (268)
T 2fv2_A           82 CVASHPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSE  159 (268)
T ss_dssp             HHHHCTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCH
T ss_pred             HHHcCcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccH
Confidence            789999999999987 777677777875421    3567788999999987654  2222234 6899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCcchhHHHHh-cC-------chHHHHHHhccCc--hhHHHHHHHHHHcCCcHHHHHHc
Q 048793          518 SSKRDALVAILNLAGDRETVGRLVE-RG-------IVEIVAEAMDVLP--EESVTILEAVVKRGGLTAIVAAY  580 (683)
Q Consensus       518 ~~~~~A~~aL~nLs~~~~n~~~iv~-aG-------~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e~~~~~  580 (683)
                      -.+.-|.-++..+-.++.+...++. +.       +...+|.-+.+.+  .....++..-..++.++..+.+.
T Consensus       160 lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL  232 (268)
T 2fv2_A          160 LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL  232 (268)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999999999998888877766654 12       2222333232222  22555555556677777666544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=90.29  E-value=2.7  Score=43.13  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHH----HHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALL----ARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~L----v~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      +..+.+.+ +- ..+.+.-++..+|.++.+. .....+.+.+.-..+    ...+.+.   ..+..+-.++.++.|+-.+
T Consensus       105 l~~l~kil-~W-P~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~---~~p~n~ml~lR~l~NlF~~  178 (304)
T 3ebb_A          105 LQILWKAI-NC-PEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPK---GKPANQLLALRTFCNCFVG  178 (304)
T ss_dssp             HHHHHHHH-TS-CTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTT---SCHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHH-cC-CHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCC---CChHHHHHHHHHHHHccCC
Confidence            44555655 33 4566777888888776643 333444433222233    3334322   2566788999999999998


Q ss_pred             chhHHHHhcc-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcC-CChhHHHHHHHH
Q 048793          449 EANKTRIMET-EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG-GPTSSKRDALVA  526 (683)
Q Consensus       449 ~~~k~~I~~~-~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~-~~~~~~~~A~~a  526 (683)
                      ...+..+... ...++.+...+... +...+..++.+++|++..-......-....++..+..++.. .+.+....++.|
T Consensus       179 ~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          179 QAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            8888776642 12344444443333 67899999999999987421111111112244444455543 356788889999


Q ss_pred             HHHhcCCcchhHHHHhc
Q 048793          527 ILNLAGDRETVGRLVER  543 (683)
Q Consensus       527 L~nLs~~~~n~~~iv~a  543 (683)
                      |.+|...+.....+++.
T Consensus       258 LGtL~~~~~~~~~lak~  274 (304)
T 3ebb_A          258 LGTLISDDSNAVQLAKS  274 (304)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCChhHHHHHHH
Confidence            99998766555555543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.13  E-value=0.12  Score=43.88  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=28.8

Q ss_pred             Cccccccccc-CCCCcee--cCCccccchhhHHHHH
Q 048793          275 ADFRCPISLE-LMRNPVV--VATGQTYDRQSISLWI  307 (683)
Q Consensus       275 ~~f~CPis~~-~m~dPv~--~~~g~ty~r~~I~~w~  307 (683)
                      +++.|+||.+ ...+||.  +.||++||+.|++.|.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4678999996 5899998  8999999999999844

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=87.55  E-value=13  Score=39.28  Aligned_cols=175  Identities=15%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCCC----CC---CCChhhHHHHHHHHHhccc
Q 048793          376 LINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGPD----TA---SRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       376 Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s~----~~---~~d~~~qe~A~~aL~nLs~  447 (683)
                      .|+.|.++...+.....+..|+..-..++.. -..+. .||+..|+.+|..-    ..   ..+...+..++.+|..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            4555655423332233445555443433322 12232 57788888877421    00   1145678888999988887


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--h-hhHHh---------hhcccHHHHHHhhcCC
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--H-RKTLG---------RKTRVVKGLMDLVKGG  515 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~-~~~i~---------~~~G~i~~Lv~lL~~~  515 (683)
                      +..+...+...++++..|+..|.+. ++.++..++.+|..+|..++  + ...+.         ....-...||+.|.++
T Consensus        88 ~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A           88 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             CHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence            7777777887778999999999776 68999999989988887654  3 22221         1133566688888754


Q ss_pred             ChhHHHHHHHHHHH-hcCCcch-------hHHHHhcCchHHHHHH
Q 048793          516 PTSSKRDALVAILN-LAGDRET-------VGRLVERGIVEIVAEA  552 (683)
Q Consensus       516 ~~~~~~~A~~aL~n-Ls~~~~n-------~~~iv~aG~V~~Lv~l  552 (683)
                      ...--..++..+.| |....++       |..+..+|.-+.|-.+
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L  211 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL  211 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence            43333444555555 4444432       3445566766665443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=87.05  E-value=7.9  Score=46.08  Aligned_cols=130  Identities=12%  Similarity=0.027  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhc------CCChhHHHHHHHHHHHhcCCcchhHHHHhc-----C
Q 048793          476 EAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVK------GGPTSSKRDALVAILNLAGDRETVGRLVER-----G  544 (683)
Q Consensus       476 ~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~------~~~~~~~~~A~~aL~nLs~~~~n~~~iv~a-----G  544 (683)
                      ..|..|..+|..|+....  ..+.  .-.++.+-.++.      +.+...++.|+.++..++.....+..-...     .
T Consensus       376 s~R~aa~~~L~~l~~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE--VLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH--HHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc--hhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            456677788888876543  2222  124444445555      345568889999999997643222110110     2


Q ss_pred             chHHHHH----HhccC----chhHHHHHHHHHHcCCc--HHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhc
Q 048793          545 IVEIVAE----AMDVL----PEESVTILEAVVKRGGL--TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRK  611 (683)
Q Consensus       545 ~V~~Lv~----lL~~~----~~~~~~aL~~L~~l~~~--~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~  611 (683)
                      ..+.++.    .|.+.    +-....|+..|...+..  ++.  ....++.++..|...++.++.+|+.+|.++|..
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            2333333    23322    23477788888776643  222  113466777777777899999999999999974

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=86.08  E-value=21  Score=42.12  Aligned_cols=154  Identities=15%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALN  463 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~  463 (683)
                      +...+..++.+|..++..-...-     ...++.++..|..- ..+++.++..+++++..++.. ..+. ....  .+++
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~--~vl~  532 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHP-VMIN--SVLP  532 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT--TTHH
T ss_pred             chHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH--HHHH
Confidence            78888999999999887643211     23445555544211 112788999999999998754 2222 2333  5888


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCCc--chhH
Q 048793          464 GVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGDR--ETVG  538 (683)
Q Consensus       464 ~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~--~n~~  538 (683)
                      .|+..|.+   +.++..|+.+|.+++..  .+..+. -..+.+..|..++.++  +...+..+..++..+....  +...
T Consensus       533 ~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          533 LVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888843   67899999999999853  222222 1134566666777653  3567788888888887543  3333


Q ss_pred             HHHhcCchHHHHHHh
Q 048793          539 RLVERGIVEIVAEAM  553 (683)
Q Consensus       539 ~iv~aG~V~~Lv~lL  553 (683)
                      ..+ ...++++...+
T Consensus       608 ~~~-~~l~~~l~~~l  621 (963)
T 2x19_B          608 KNL-HSLISPYIQQL  621 (963)
T ss_dssp             HHH-HHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHH
Confidence            322 23455555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=85.90  E-value=17  Score=35.32  Aligned_cols=161  Identities=13%  Similarity=0.075  Sum_probs=101.6

Q ss_pred             CcHHHHHHHHhc----CC------CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          460 GALNGVIEVLRS----GA------TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       460 G~I~~Lv~lL~~----~~------~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ||+..|+.+|..    +.      +......+..+|..+.........+....+++..|+..|.+.++..+..++..|..
T Consensus        43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~  122 (233)
T 2f31_A           43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  122 (233)
T ss_dssp             HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            678888888763    11      23456678899999988888777777778899999999988888999999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc-CChHHHHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE-GSDTSRESAAATLVTI  608 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L  608 (683)
                      +|..++.      .|+-+.+++.+.           ....       .........++..+++ .+..-+-.+...+-.+
T Consensus       123 lc~~~~~------~G~~~~VL~Al~-----------~~~~-------~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A          123 LCILPQP------EDMNERVLEAMT-----------ERAE-------MDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHTCSSS------SCHHHHHHHHHH-----------HHHH-------HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHhCCCC------CChHHHHHHHHH-----------HHHH-------hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            9987641      111222222222           1110       0111234445555543 3334444444444444


Q ss_pred             HhcCCc----hHHHHHHhcCCcHHHHHHHhhcCCHHHHHH
Q 048793          609 CRKGGS----EMVADIAAVPGIERVIWELMESGTARARRK  644 (683)
Q Consensus       609 ~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~k  644 (683)
                      ....++    -..+.-+...|+.+.+-.|-..+++....+
T Consensus       179 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence            444333    234555678899999998887777776655

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.52  E-value=8.6  Score=45.67  Aligned_cols=209  Identities=14%  Similarity=0.076  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhh---CCCCCCCChhhHHHHHHHHHhcccCc-hhHHHHhcccC
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHL---GPDTASRLPNLQVNAVTTILNLSILE-ANKTRIMETEG  460 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL---~s~~~~~d~~~qe~A~~aL~nLs~~~-~~k~~I~~~~G  460 (683)
                      +...++.|+..+..++..-....     ...+|.++.++   .+.  +.++.++..++++|..++..- .+. ....  .
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~--~  546 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENP-AYIP--P  546 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC-----CHH--H
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCH-HHHH--H
Confidence            66788899999999876544221     13344444433   211  117889999999999987431 111 2222  3


Q ss_pred             cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHh-hhcccHHHHHHhhcCC--ChhHHHHHHHHHHHhcCC--cc
Q 048793          461 ALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLG-RKTRVVKGLMDLVKGG--PTSSKRDALVAILNLAGD--RE  535 (683)
Q Consensus       461 ~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~-~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~--~~  535 (683)
                      +++.|+..|.    +.++..|+.++.+++..-  +..+. .-.+.+..|..++.++  +...+..+..++..+...  .+
T Consensus       547 vl~~l~~~l~----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~  620 (971)
T 2x1g_F          547 AINLLVRGLN----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE  620 (971)
T ss_dssp             HHHHHHHHHH----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHhC----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence            6677777773    467899999999998532  22222 1135667777778764  356777788888877653  23


Q ss_pred             hhHHHHhcCchHHHHHHhc----cC---c---hhHHHHHHHHHHcC----Cc----------HHHHH--HcCchHHHHHH
Q 048793          536 TVGRLVERGIVEIVAEAMD----VL---P---EESVTILEAVVKRG----GL----------TAIVA--AYNTIKKLCIL  589 (683)
Q Consensus       536 n~~~iv~aG~V~~Lv~lL~----~~---~---~~~~~aL~~L~~l~----~~----------~e~~~--~~g~v~~Lv~l  589 (683)
                      ++...++ ..+++++..+.    ..   +   .....++..|+...    ..          .+...  .....+.+..+
T Consensus       621 ~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  699 (971)
T 2x1g_F          621 EIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRI  699 (971)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHH
Confidence            3333222 34455554442    11   1   12334444443321    11          00000  01234555555


Q ss_pred             Hhc--CChHHHHHHHHHHHHHHh
Q 048793          590 LRE--GSDTSRESAAATLVTICR  610 (683)
Q Consensus       590 L~~--~s~~~ke~A~~aL~~L~~  610 (683)
                      +..  .+....+.+++++..++.
T Consensus       700 l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          700 AEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHH
Confidence            543  367889999999888765

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=85.48  E-value=9.5  Score=38.17  Aligned_cols=174  Identities=11%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhC-cHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc---Cch
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAG-AIALLARHLGPDTASRLPNLQVNAVTTILNLSI---LEA  450 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G-~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~---~~~  450 (683)
                      .+...|-+. |...+.+|+..|......++  ..++...+ .++.+.--+.+.    +..+...++.+|..+..   +.+
T Consensus        50 ~~~~~lfs~-d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~----N~~v~~~~L~~L~~l~~~l~~~~  122 (266)
T 2of3_A           50 SLMSQLFHK-DFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFET----NPAALIKVLELCKVIVELIRDTE  122 (266)
T ss_dssp             HHHHHHTCS-CHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSC----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHHHHhcc
Confidence            455666666 88888999998888665433  23332222 233333334455    78888888877776531   111


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHh
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNL  530 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nL  530 (683)
                      ++-.=.+..-.+|.|+.-+..+ ...+|..+-.+|..++..       ..-...++.+++-+++.+.+.+..++..|..+
T Consensus       123 y~~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          123 TPMSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCCCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            1111111113678888877655 467888877777766532       11134667788888888888998888888877


Q ss_pred             cCCcchhHHHHhcCch---HHHHHHhccC-chhHHHHHHHH
Q 048793          531 AGDRETVGRLVERGIV---EIVAEAMDVL-PEESVTILEAV  567 (683)
Q Consensus       531 s~~~~n~~~iv~aG~V---~~Lv~lL~~~-~~~~~~aL~~L  567 (683)
                      -...+-.    ...++   +.+..++.+. ..+...|+..+
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~l  231 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVL  231 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence            4322111    13356   6677777643 23333444433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=84.89  E-value=19  Score=37.92  Aligned_cols=165  Identities=13%  Similarity=0.062  Sum_probs=102.4

Q ss_pred             HHHhcccCcHHHHHHHHhc----C------CCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793          453 TRIMETEGALNGVIEVLRS----G------ATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       453 ~~I~~~~G~I~~Lv~lL~~----~------~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                      ...+ . +|+..|+.+|..    +      .+......+..+|..+.....+...+....+.|..|+..|.+..+.++..
T Consensus       104 ~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~  181 (383)
T 3eg5_B          104 QTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  181 (383)
T ss_dssp             HHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred             HHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence            4444 4 678889998852    1      12355677889999998888777777777899999999999888999999


Q ss_pred             HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCchhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhc-CChHHHHHH
Q 048793          523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLRE-GSDTSRESA  601 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~-~s~~~ke~A  601 (683)
                      |+..|..+|..++.      .|+-+.+++.+.           .+..       .........++..|.+ .+...+-.+
T Consensus       182 aleLL~~lc~~~~~------~gG~~~VL~Al~-----------~~~~-------~~e~~RF~~lv~~L~~~~~~e~~~~~  237 (383)
T 3eg5_B          182 AAKLLSALCILPQP------EDMNERVLEAMT-----------ERAE-------MDEVERFQPLLDGLKSGTSIALKVGC  237 (383)
T ss_dssp             HHHHHHHHHTCCSS------TTHHHHHHHHHH-----------HHHH-------HHTSCTTHHHHHTTSTTSCHHHHHHH
T ss_pred             HHHHHHHHHhCcCc------CCcHHHHHHHHH-----------HHHH-------hCCCCcHHHHHHHHHccCcHHHHHHH
Confidence            99999999987641      111222222221           1111       1112234455555554 344444444


Q ss_pred             HHHHHHHHhcCCc----hHHHHHHhcCCcHHHHHHHhhcCCHHHHH
Q 048793          602 AATLVTICRKGGS----EMVADIAAVPGIERVIWELMESGTARARR  643 (683)
Q Consensus       602 ~~aL~~L~~~~~~----~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~  643 (683)
                      ...+-.+....++    -..+.-+...|+.+.+..|-..+++....
T Consensus       238 m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          238 LQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            4444444444333    13444566789999888876655655443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=84.80  E-value=3.2  Score=41.67  Aligned_cols=134  Identities=10%  Similarity=0.041  Sum_probs=89.9

Q ss_pred             cCCCHHHHHHHHHHHHhhhccCc--hhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcc
Q 048793          382 TSQSMEAANDAVYELRSLSKTDS--DSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMET  458 (683)
Q Consensus       382 s~~~~~~~~~A~~~L~~La~~~~--~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~  458 (683)
                      ++ +..+...++..|..+...-.  ..+-.-.+ .-.+|.|+.-|+..    ...+++.+-.+|..+..       +...
T Consensus        98 d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~----k~~vR~~~r~il~~l~~-------v~~~  165 (266)
T 2of3_A           98 ET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA----KDNMRTSVRDIVNVLSD-------VVGP  165 (266)
T ss_dssp             SC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS----SHHHHHHHHHHHHHHHH-------HHCH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHHHHH-------HCCH
Confidence            45 77777777777766532111  01111111 24789999988877    77888888887766642       2222


Q ss_pred             cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccH---HHHHHhhcCCChhHHHHHHHHHHHhcCC
Q 048793          459 EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVV---KGLMDLVKGGPTSSKRDALVAILNLAGD  533 (683)
Q Consensus       459 ~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i---~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  533 (683)
                      ....+.++.-+++. +...|+.++..+.++-......    . ..++   +.+..++.+.+..++..|+.++..+-.+
T Consensus       166 ~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          166 LKMTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            13566677777776 7999999998888875433222    2 3578   9999999999999999999988766543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=83.49  E-value=9.4  Score=41.32  Aligned_cols=92  Identities=10%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             cCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCc
Q 048793          382 TSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGA  461 (683)
Q Consensus       382 s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~  461 (683)
                      .+ +...++-|+.-|...-++-++...     -+|..+++|....    |..++..|+..|-.+|.+ ++-.+|      
T Consensus        39 kg-~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDe----d~~IR~qaik~Lp~~ck~-~~i~ki------  101 (507)
T 3u0r_A           39 KG-GTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDE----DVSIRRQAIKELPQFATG-ENLPRV------  101 (507)
T ss_dssp             GS-CHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCS----SHHHHHHHHHHGGGGCCT-TCHHHH------
T ss_pred             CC-CHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc----cHHHHHHHHHhhHHHhhh-hhhhhH------
Confidence            45 788999999999999998886554     4678899999999    999999999999999988 554444      


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793          462 LNGVIEVLRSGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       462 I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      ...|+++|+.. +.......-.+|..|-..
T Consensus       102 aDvL~QlLqtd-d~~E~~~V~~sL~sllk~  130 (507)
T 3u0r_A          102 ADILTQLLQTD-DSAEFNLVNNALLSIFKM  130 (507)
T ss_dssp             HHHHHHHTTCC-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-chHHHHHHHHHHHHHHhc
Confidence            45689999877 566666666666655443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=83.35  E-value=33  Score=40.53  Aligned_cols=171  Identities=9%  Similarity=0.030  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh---c--CCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHH
Q 048793          474 TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV---K--GGPTSSKRDALVAILNLAGDRETVGRLVERGIVEI  548 (683)
Q Consensus       474 ~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~  548 (683)
                      +...++.|..+|..++..-....     ...++.++.++   .  +..+.++..++++|..++..-....... ..+++.
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~  550 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL  550 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence            57789999999999876432111     12333344333   3  2367789999999999886422111111 134555


Q ss_pred             HHHHhccCchhHHHHHHHHHHcCCc-HH-HHHHc-CchHHHHHHHhc--CChHHHHHHHHHHHHHHhcCCchHHHHHHhc
Q 048793          549 VAEAMDVLPEESVTILEAVVKRGGL-TA-IVAAY-NTIKKLCILLRE--GSDTSRESAAATLVTICRKGGSEMVADIAAV  623 (683)
Q Consensus       549 Lv~lL~~~~~~~~~aL~~L~~l~~~-~e-~~~~~-g~v~~Lv~lL~~--~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~  623 (683)
                      |+..|.  +.....|..++..++.. .. ..... .-+..+..++.+  .+...++.+..++..+....+.......+  
T Consensus       551 l~~~l~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~--  626 (971)
T 2x1g_F          551 LVRGLN--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL--  626 (971)
T ss_dssp             HHHHHH--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH--
T ss_pred             HHHHhC--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH--
Confidence            666663  45555555555554421 11 11111 123444555665  45788899999998887754322222222  


Q ss_pred             CCcHHHHH----HHhhcC--CHHHHHHHHHHHHHHHh
Q 048793          624 PGIERVIW----ELMESG--TARARRKAAALLRILRR  654 (683)
Q Consensus       624 ~G~~~~L~----~Ll~~~--~~~~k~kA~~lL~~l~~  654 (683)
                      ..+++++.    .+.+..  ++..+.++...+..+..
T Consensus       627 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  663 (971)
T 2x1g_F          627 DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST  663 (971)
T ss_dssp             HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence            12333333    333333  44456666667766655

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=82.57  E-value=1.1  Score=44.41  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=36.7

Q ss_pred             ccccccccCCCCceec-CCccccchhhHHHHHhc-CCCCCCCCCCccCCC
Q 048793          277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIES-GHNTCPKTGQTLAHT  324 (683)
Q Consensus       277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~-g~~~cP~~~~~l~~~  324 (683)
                      ..|.||.++..--+.- .||+.|-+.|+.+|+.. +...||.|+.+.+..
T Consensus       181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            3599998887644433 38999999999999975 457999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	683
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-20
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-16
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-14
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-09
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-07
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.004
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.004

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.4 bits (208), Expect = 1e-20
 Identities = 42/70 (60%), Positives = 53/70 (75%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTAL 332
            P  FRCPISLELM++PV+V+TGQTY+R SI  W+++GH TCPK+ +TL H  L  N  L
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 333 KNLIALWCRE 342
           K+LIALWC  
Sbjct: 65  KSLIALWCES 74

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 25/77 (32%), Positives = 36/77 (46%)

Query: 273 VPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTAL 332
           +P      IS ELMR P +  +G TYDR+ I   ++   +  P T   L    L+ N A+
Sbjct: 4   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 333 KNLIALWCREQRIPFDY 349
           K +I  +  E     DY
Sbjct: 64  KEVIDAFISENGWVEDY 80

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 2e-14
 Identities = 22/87 (25%), Positives = 37/87 (42%)

Query: 258 SDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKT 317
             S L++++  + A+   +F  PI   LM +PVV+ + +    +S          T P  
Sbjct: 4   GSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFN 63

Query: 318 GQTLAHTNLVTNTALKNLIALWCREQR 344
              L    +  NT LK  I  W  E++
Sbjct: 64  RSPLTMDQIRPNTELKEKIQRWLAERK 90

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 272 NVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIES--GHNTCPKTGQTLAHTNLVTN 329
            +     CPI LEL++ PV       + +  +   +    G + CP     +   +L  +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76

Query: 330 TALKNLI 336
           T    L+
Sbjct: 77  TRFSQLV 83

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 279 CPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT 328
           C I  E  ++  +   G       ++ W ES    CP     +  T  + 
Sbjct: 26  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 262 LRRKKSASDANVPADFR----CPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKT 317
           L  K  A D   PA F     C I   ++ +PV  +    + R  I   ++   + CP  
Sbjct: 7   LSTKLLAVD--FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSC 64

Query: 318 GQTLAHTNLVT 328
                 T+L +
Sbjct: 65  RYPCFPTDLES 75

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (98), Expect = 4e-06
 Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 279 CPISLELMRNPVVVA-TGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV 327
           C IS ++ R PV+   +   +++  +  +++      P T + L+   +V
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV 51

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRS 471
              AI  L + L  +       +   A   +  LS  EA++  IM +   ++ ++  +++
Sbjct: 15  ATRAIPELTKLLNDED----QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 472 GATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI 527
               E     A T+ +LS        + + +  +  L+ ++     S    A+  +
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTL 125

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 21/199 (10%)

Query: 455 IMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKG 514
            +     L  V+++L   + W     A   +     +        R+   +  L+ L+  
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLI-KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 515 GPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLPEESVTILEAVVKRGGLT 574
               ++R   +           V  +    IVE    A+ +L  +       +     + 
Sbjct: 409 AHQDTQRRTSMGGTQQQ----FVEGVRMEEIVEGCTGALHILARDVHN-RIVIRGLNTIP 463

Query: 575 AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICR-KGGSEMVADIAAVPGIERVIWEL 633
             V           LL    +  +  AA  L  + + K  +E +    A       + EL
Sbjct: 464 LFVQ----------LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA----PLTEL 509

Query: 634 MESGTARARRKAAALLRIL 652
           + S        AAA+L  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 4e-05
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 379 KLATSQSMEAANDAVYELRS-LSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVN 437
           K   S ++E+   A    R  LS+        I  AG I      LG    +    +Q  
Sbjct: 20  KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFE 76

Query: 438 AVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKT 497
           +   + N++   + +T+ +   GA+      L +         A   + +++G  +  + 
Sbjct: 77  SAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135

Query: 498 LGRKTRVVKGLMDLVKGGPTSSKRDALVAIL 528
           L  K   +  L+ L+     S+     +  L
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 4/38 (10%)

Query: 278 RCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCP 315
           RC       + P ++    T         +E+    CP
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSG----CLEASGMQCP 41

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 9e-04
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 429 SRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSL 488
           S+    Q      I +    + +  + +   G +  ++++LRS      +  AA  + +L
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQAAAGALRNL 71

Query: 489 SGVHAHRKTLGRKTRVVKGLMDLV-KGGPTSSKRDALVAILNLAGDRETVGRLVERGIVE 547
                  K   R+   ++  + L+ + G    ++     + NL+   E    L+   +  
Sbjct: 72  VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPV 131

Query: 548 IVAEAMDVLPEESVTILEAVVKRGGLTAIVAAYNTIKKLC 587
           +    +               +         A   ++ L 
Sbjct: 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS 171

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 30/251 (11%), Positives = 70/251 (27%), Gaps = 8/251 (3%)

Query: 255 VQKSDSRLRRKKSASDANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTC 314
           V+     L       DA VP  +R              +TG   ++    +         
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP 267

Query: 315 PKTGQTLAHTNLVTNTALKNLIALWC---REQRIPFDYAASSEKVNGVVTNKAALEATKM 371
            +         L  + A++  + L     ++  +     A            + +     
Sbjct: 268 EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG 327

Query: 372 TASFLINKLATSQSMEAAN---DAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDT 427
                + ++A       ++        L ++S+        +       +          
Sbjct: 328 LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGN 386

Query: 428 ASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFS 487
            S   ++  +A  T+ NL   +    +   +   LN +I + RS A+ +A   A   +  
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

Query: 488 LSGVHAHRKTL 498
           +      +  L
Sbjct: 447 MWSSKELQGVL 457

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 276 DFRCPISLELM-----RNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL 326
           D  CP              +V   G T     + L    G   CP+ G  L  +N 
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	683
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.86
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.85
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.84
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.83
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.82
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.81
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.76
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.69
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.6
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.41
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.37
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.3
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.25
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.8
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.78
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.62
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.46
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.42
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.39
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.34
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.3
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.13
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.13
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.98
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.72
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.69
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.51
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.33
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.31
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.19
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.08
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.06
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.93
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.77
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.45
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.44
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.39
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.96
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.52
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.99
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	84.39

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.8e-22  Score=218.94  Aligned_cols=276  Identities=14%  Similarity=0.105  Sum_probs=229.7

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..+.++.|++.|.+..+.+.+..|+..|..++. +++++..+++.|+||.|+.+|+++    ++.++.+|+.+|.|++.+
T Consensus        57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~----~~~v~~~a~~aL~~l~~~  131 (529)
T d1jdha_          57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSP----VDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCC----CHHHHHHHHHHHHHhhcc
Confidence            456799999999775478999999999999987 456999999999999999999998    999999999999999987


Q ss_pred             chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCC-hhHHHHHHH
Q 048793          449 EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGP-TSSKRDALV  525 (683)
Q Consensus       449 ~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~~A~~  525 (683)
                      .++ +..+... |+|+.|+.+|+++ +.+.+..++++|.+|+..+. ++..+.. .|++++|+.++...+ ...+..++.
T Consensus       132 ~~~~~~~~~~~-g~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~  208 (529)
T d1jdha_         132 QEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSR  208 (529)
T ss_dssp             CTTHHHHHHHH-THHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             cchhhhHHHhc-CCchHHHHHHHcc-ChHHHHHHHHHHHHHhhhhhHHHHHHHh-cccchHHHHHHHhhhhHHHHHHHHH
Confidence            654 5556676 9999999999988 79999999999999997655 5555555 899999999997665 568889999


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHH-HHHcCchHHHHHHHhcCChHHHHHHHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAI-VAAYNTIKKLCILLREGSDTSRESAAA  603 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~-~~~~g~v~~Lv~lL~~~s~~~ke~A~~  603 (683)
                      +|.+++.+++++..++++|++++|+.++.+. .+....++..|.+++..... ....|.++.|++++.++++..++.|++
T Consensus       209 ~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~  288 (529)
T d1jdha_         209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG  288 (529)
T ss_dssp             HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHH
Confidence            9999999999999999999999999999864 34577777777775532211 111267899999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHhcCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHHh
Q 048793          604 TLVTICRKGGSEMVADIAAVPGIERVIWELME--SGTARARRKAAALLRILRR  654 (683)
Q Consensus       604 aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~--~~~~~~k~kA~~lL~~l~~  654 (683)
                      +|++|+.++.  .....+.+.|+++.|+.++.  ++.+.+++.|.+.|+++..
T Consensus       289 ~L~~l~~~~~--~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         289 ILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHTTTCH--HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHhhccchh--HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            9999997543  34555677888888887663  4578899999999999874

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=217.64  Aligned_cols=273  Identities=15%  Similarity=0.100  Sum_probs=230.2

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH-hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE-AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~-~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~  447 (683)
                      ..++||.|+++|++. +..++..|+..|..+++++. .|..++. .|++|.|+.+|.+.   .+.++++.|+.+|.+|+.
T Consensus        15 ~~~aip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~---~~~~~~~~a~~~L~~l~~   89 (529)
T d1jdha_          15 ATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNT---NDVETARCTAGTLHNLSH   89 (529)
T ss_dssp             --CHHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhC
Confidence            356799999999998 99999999999999998765 5555555 58899999999764   178999999999999999


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      +++++..|++. |+++.|+.+|+++ +++.+.+|+++|.+|+.+.++. ..+.. .|+|+.|+.+|+++++..+..++++
T Consensus        90 ~~~~~~~i~~~-g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~a~~~  166 (529)
T d1jdha_          90 HREGLLAIFKS-GGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDC  166 (529)
T ss_dssp             SHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             CchhHHHHHHC-CCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHccChHHHHHHHHH
Confidence            99999999998 9999999999988 7999999999999999876654 45555 8999999999999999999999999


Q ss_pred             HHHhcCCc-chhHHHHhcCchHHHHHHhccC--chhHHHHHHHHHHcCCcH---HHHHHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAGDR-ETVGRLVERGIVEIVAEAMDVL--PEESVTILEAVVKRGGLT---AIVAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~--~~~~~~aL~~L~~l~~~~---e~~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      |.+|+... +++..+++.|++++|+.++...  ......+..++.+++.+.   ......|+++.|+.++...+...+++
T Consensus       167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~  246 (529)
T d1jdha_         167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhh
Confidence            99999764 4677778999999999999743  334666777777766543   34555688999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          601 AAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       601 A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      |+++|.+++......     ....|+++.|+.++.++++.+++.|.++|.++..
T Consensus       247 a~~~l~~ls~~~~~~-----~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         247 CLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHhccccccch-----hhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            999999998654321     2234789999999999999999999999999865

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.9e-20  Score=206.91  Aligned_cols=280  Identities=14%  Similarity=0.115  Sum_probs=238.8

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.++.|+..|+++.+.+.+..|+++|.+++..++.....+.+.|++|.|+.+|.++    +.++++.|+++|.|++.+
T Consensus       117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~----~~~i~~~a~~~L~nia~~  192 (503)
T d1wa5b_         117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----SVEVKEQAIWALGNVAGD  192 (503)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHTT
T ss_pred             HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC----ChhHHHHHHHHHHHHhhh
Confidence            4688999999998654788999999999999998888888899999999999999998    999999999999999875


Q ss_pred             -chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          449 -EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       449 -~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                       ++++..+... |+++.|+.++.+. +...+.+++++|.+|+.............|+++.|+.++.++++....+++++|
T Consensus       193 ~~~~r~~l~~~-~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l  270 (503)
T d1wa5b_         193 STDYRDYVLQC-NAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI  270 (503)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhh-cccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence             5778888887 9999999999988 689999999999999987654443333378999999999999999999999999


Q ss_pred             HHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HH---HHHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TA---IVAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .+|+.+.. ....+++.|+++.|+.++..+ ......++.+|.+++.. .+   .....|.++.|..++.+.++..++.+
T Consensus       271 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~  350 (503)
T d1wa5b_         271 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA  350 (503)
T ss_dssp             HHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHH
Confidence            99998665 457788999999999999854 44577788888877643 22   23345889999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +++|.+++.++.  .....+.+.|+++.++.++.+++.++++.|.++|.++....
T Consensus       351 ~~~l~nl~~~~~--~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         351 CWTISNITAGNT--EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  403 (503)
T ss_dssp             HHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccH--HHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence            999999998543  34455678899999999999999999999999999987643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=8.1e-20  Score=196.53  Aligned_cols=281  Identities=14%  Similarity=0.135  Sum_probs=234.8

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.++.|+++|+++.++++|..|+++|.+++..+++++..+.+.|++|.|+.+|.++    +..+++.|+++|.|++.+
T Consensus        54 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~----~~~~~~~a~~~L~nl~~~  129 (434)
T d1q1sc_          54 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----HAHISEQAVWALGNIAGD  129 (434)
T ss_dssp             HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccC----CHHHHHHHHHHHHHHhcc
Confidence            4588999999997653688999999999999998888999999999999999999998    999999999999999976


Q ss_pred             c-hhHHHHhcccCcHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHH
Q 048793          449 E-ANKTRIMETEGALNGVIEVLRSGA----TWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDA  523 (683)
Q Consensus       449 ~-~~k~~I~~~~G~I~~Lv~lL~~~~----~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A  523 (683)
                      . +.+..+... |+++.++.++....    .......+++++.+++........+....++++.|+.++.+++++.+.+|
T Consensus       130 ~~~~~~~i~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a  208 (434)
T d1q1sc_         130 GSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  208 (434)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             chHHHHHHHHh-hhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhH
Confidence            5 556667776 99999999997652    23456778889999988765544444337899999999999999999999


Q ss_pred             HHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHH
Q 048793          524 LVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTS  597 (683)
Q Consensus       524 ~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~  597 (683)
                      +++|.+|+.++. ....+.+.|+++.|++++.+. .+....++..|.+++. +.+.   ....|+++.|+.++.+.++..
T Consensus       209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v  288 (434)
T d1q1sc_         209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  288 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred             HhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhh
Confidence            999999998765 455567889999999999854 4457788888888764 3333   344588999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          598 RESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      ++.|+++|.+++.+..  .....+.+.|+++.++.++.++++.++..|.++|.++..+.
T Consensus       289 ~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         289 QKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHhhhccccc--hhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcC
Confidence            9999999999998543  34556778899999999999999999999999999987653

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=8.5e-22  Score=162.66  Aligned_cols=78  Identities=31%  Similarity=0.465  Sum_probs=73.5

Q ss_pred             CCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCCCCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRIPFD  348 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~~  348 (683)
                      .++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|++++...++.||..|+++|++|+.+|||..+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~~d   79 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVED   79 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSSC
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCcCC
Confidence            368999999999999999999999999999999999998888999999999999999999999999999999998643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1e-21  Score=161.37  Aligned_cols=76  Identities=57%  Similarity=1.091  Sum_probs=72.5

Q ss_pred             CCCCCCcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793          270 DANVPADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI  345 (683)
Q Consensus       270 ~~~~p~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  345 (683)
                      .+++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.++...+++||..|+++|++|+++||+
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            3579999999999999999999999999999999999998788999999999999999999999999999999986

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.2e-18  Score=192.23  Aligned_cols=278  Identities=17%  Similarity=0.159  Sum_probs=234.1

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      ..|.++.++.+|.++ +.+.+..|+++|.+++.+++.+|..+.+.|+++.|+.++.+.    +..++..++++|.|++.+
T Consensus       160 ~~g~i~~l~~lL~s~-~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~----~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         160 DADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN----KPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC----CHHHHHHHHHHHHHHHCC
T ss_pred             hCCChHHHHHHhcCC-ChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC----CHHHHHHHHHHHHHHhcC
Confidence            568899999999998 999999999999999999999999999999999999999998    899999999999999976


Q ss_pred             chh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          449 EAN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       449 ~~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      ... ....... |+++.++.++.++ +.+.+..++++|.+|+...... ..+.. .|+++.|+.++.+++..+...|+.+
T Consensus       235 ~~~~~~~~~~~-~~l~~l~~~l~~~-d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         235 KKPQPDWSVVS-QALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             SSSCCCHHHHG-GGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             CccchHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCchhhhhhHHHH
Confidence            443 2233333 8999999999988 7999999999999999876544 45555 8999999999999999999999999


Q ss_pred             HHHhcCCcch-hHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHH---HHHcCchHHHHHHHhcCChHHHHH
Q 048793          527 ILNLAGDRET-VGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAI---VAAYNTIKKLCILLREGSDTSRES  600 (683)
Q Consensus       527 L~nLs~~~~n-~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~---~~~~g~v~~Lv~lL~~~s~~~ke~  600 (683)
                      |.|++.+.+. ...+++.|+++.|..++.+. +.....++.+|.+++. +++.   +...|.++.++.++.+++..++..
T Consensus       312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~  391 (503)
T d1wa5b_         312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE  391 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHH
Confidence            9999987654 45667899999999999864 3457788888888764 4443   334588999999999999999999


Q ss_pred             HHHHHHHHHhcCCc-hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          601 AAATLVTICRKGGS-EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       601 A~~aL~~L~~~~~~-~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      |+++|.+++.++.. ......+...|+++.|+.++...+.++...+...|.++-+
T Consensus       392 a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999976543 2234456679999999999999999999888887777654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.9e-18  Score=184.22  Aligned_cols=285  Identities=16%  Similarity=0.114  Sum_probs=233.8

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCC-CChhhHHHHHHHHHhccc
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTAS-RLPNLQVNAVTTILNLSI  447 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~-~d~~~qe~A~~aL~nLs~  447 (683)
                      ..|+++.|+.+|.++ +.+.+..|+++|.+++.+++..|..+.+.|+++.|+.++...... ........+++++.+++.
T Consensus        97 ~~~~i~~l~~~L~~~-~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  175 (434)
T d1q1sc_          97 DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  175 (434)
T ss_dssp             HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             hccchhhhhhccccC-CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhh
Confidence            568899999999998 999999999999999999988999999999999999999876110 123455677888899887


Q ss_pred             CchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHH
Q 048793          448 LEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAI  527 (683)
Q Consensus       448 ~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL  527 (683)
                      +......+....++++.++.++.++ +.+.+..++++|.+|+..+.....+....|+++.|+.++.+++...+..|+.+|
T Consensus       176 ~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l  254 (434)
T d1q1sc_         176 NKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  254 (434)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhHHHHHHHHHhcc-ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence            6544333322237899999999988 799999999999999987765555444489999999999999999999999999


Q ss_pred             HHhcCCcc-hhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCc-HH---HHHHcCchHHHHHHHhcCChHHHHHH
Q 048793          528 LNLAGDRE-TVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGL-TA---IVAAYNTIKKLCILLREGSDTSRESA  601 (683)
Q Consensus       528 ~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~-~e---~~~~~g~v~~Lv~lL~~~s~~~ke~A  601 (683)
                      .+++.+.+ .+..+++.|+++.|+.+|.+. ++....++..|.+++.. .+   .....|.++.++.++.+.++..+..|
T Consensus       255 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a  334 (434)
T d1q1sc_         255 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  334 (434)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHH
T ss_pred             hhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHH
Confidence            99998654 677888999999999999864 44578888888888743 33   23445889999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      +++|.+++.+...+. ...+.+.|+++.|+.++.++++++...|.+.|..+-++.
T Consensus       335 ~~~l~nl~~~~~~~~-~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         335 AWAITNYTSGGTVEQ-IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HHHHHHHHHHSCHHH-HHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999998765544 344667899999999999999999999998887776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.2e-18  Score=181.78  Aligned_cols=277  Identities=17%  Similarity=0.155  Sum_probs=215.3

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-Cch
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~  450 (683)
                      +||.||++|+++ +++.|..|++.|.+++.+++++|..+.+.|+||.|+.+|+++    ++++++.|+.+|.||+. +++
T Consensus         3 ~ip~lv~~L~~~-~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~~~~   77 (457)
T d1xm9a1           3 TIPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQNVQQAAAGALRNLVFRSTT   77 (457)
T ss_dssp             CHHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHHSSCHH
T ss_pred             CHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCCHH
Confidence            689999999999 999999999999999998889999999999999999999998    99999999999999995 567


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhh----------------cC
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLV----------------KG  514 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL----------------~~  514 (683)
                      ++..+.+. |+++.++.++.+..+.+.+..|+++|.+|+..+..+.....  ++++.++..+                ..
T Consensus        78 ~~~~i~~~-g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~  154 (457)
T d1xm9a1          78 NKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREV  154 (457)
T ss_dssp             HHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------C
T ss_pred             HHHHHHHC-CChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHh--cccHHHHHHHHhhhhhhhcchhhhhccc
Confidence            88888887 99999999998766789999999999999998887777665  3455555443                22


Q ss_pred             CChhHHHHHHHHHHHhcCCcchhHHHHh-cCchHHHHHHhccC-------chhHHHHHHHHHHcCCc-------------
Q 048793          515 GPTSSKRDALVAILNLAGDRETVGRLVE-RGIVEIVAEAMDVL-------PEESVTILEAVVKRGGL-------------  573 (683)
Q Consensus       515 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~-aG~V~~Lv~lL~~~-------~~~~~~aL~~L~~l~~~-------------  573 (683)
                      .+......++.+|.+++.+++++..++. .|+++.|+.++.+.       ......++..+......             
T Consensus       155 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  234 (457)
T d1xm9a1         155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE  234 (457)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            3567889999999999999999888765 68899999988621       11111121111110000             


Q ss_pred             -----H--------------H-------------------H---HHHcCchHHHHHHHhc-CChHHHHHHHHHHHHHHhc
Q 048793          574 -----T--------------A-------------------I---VAAYNTIKKLCILLRE-GSDTSRESAAATLVTICRK  611 (683)
Q Consensus       574 -----~--------------e-------------------~---~~~~g~v~~Lv~lL~~-~s~~~ke~A~~aL~~L~~~  611 (683)
                           .              .                   .   ....+.++.++.++.. .++..++.+.+++..++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  314 (457)
T d1xm9a1         235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence                 0              0                   0   0000234556666654 5678889999999999876


Q ss_pred             CCc---hHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Q 048793          612 GGS---EMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRWA  656 (683)
Q Consensus       612 ~~~---~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~  656 (683)
                      ...   ...+..+.+.|+++.|+.++.++++.+++.|.++|.+|....
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            543   223555677899999999999999999999999999998743

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-19  Score=153.75  Aligned_cols=74  Identities=32%  Similarity=0.437  Sum_probs=68.4

Q ss_pred             CCCCCcccccccccCCCCceecCCc-cccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHHHcCC
Q 048793          271 ANVPADFRCPISLELMRNPVVVATG-QTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCREQRI  345 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dPv~~~~g-~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  345 (683)
                      .++|++|+||||+++|+|||+++|| |||||.||++|+.. +.+||.|++++...+|+||..|++.|++|+.++.-
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999876 59999999999986 56899999999999999999999999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2e-16  Score=167.69  Aligned_cols=286  Identities=15%  Similarity=0.090  Sum_probs=215.5

Q ss_pred             hhhhHHHhhhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHH
Q 048793          362 NKAALEATKMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTT  441 (683)
Q Consensus       362 ~~~~i~~~~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~a  441 (683)
                      .+..+. ..|+|+.|+++|+++ +++.|..|+++|.+++.+++++|..+.+.|+++.|+.++.+.   .+..+++.|+.+
T Consensus        36 ~~~~i~-~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~---~~~~~~~~a~~~  110 (457)
T d1xm9a1          36 AKQQVY-QLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT---GNAEIQKQLTGL  110 (457)
T ss_dssp             HHHHHH-HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC---CCHHHHHHHHHH
T ss_pred             HHHHHH-HCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc---CcHHHHHHHHHH
Confidence            445554 678999999999998 999999999999999998999999999999999999998764   178899999999


Q ss_pred             HHhcccCchhHHHHhcccCcHHHHHHHHh---------------cCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHH
Q 048793          442 ILNLSILEANKTRIMETEGALNGVIEVLR---------------SGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVK  506 (683)
Q Consensus       442 L~nLs~~~~~k~~I~~~~G~I~~Lv~lL~---------------~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~  506 (683)
                      |.+++.++..+...... | ++.++..+.               ...+...+..++++|.+++..++++..+....|+++
T Consensus       111 l~~l~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~  188 (457)
T d1xm9a1         111 LWNLSSTDELKEELIAD-A-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID  188 (457)
T ss_dssp             HHHHHTSSSTHHHHHHH-H-HHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHH
T ss_pred             HHHHHhhhhhHHHHHhc-c-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHH
Confidence            99999887777666654 4 444444331               222578889999999999888777766655456666


Q ss_pred             HHHHhhc-------------------------------------------------------------------------
Q 048793          507 GLMDLVK-------------------------------------------------------------------------  513 (683)
Q Consensus       507 ~Lv~lL~-------------------------------------------------------------------------  513 (683)
                      .|+.++.                                                                         
T Consensus       189 ~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
T d1xm9a1         189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE  268 (457)
T ss_dssp             HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHH
Confidence            6655432                                                                         


Q ss_pred             -------------------------C-CChhHHHHHHHHHHHhcCCcc------hhHHHHhcCchHHHHHHhccC-chhH
Q 048793          514 -------------------------G-GPTSSKRDALVAILNLAGDRE------TVGRLVERGIVEIVAEAMDVL-PEES  560 (683)
Q Consensus       514 -------------------------~-~~~~~~~~A~~aL~nLs~~~~------n~~~iv~aG~V~~Lv~lL~~~-~~~~  560 (683)
                                               . .++.....+.+++.+++....      .+..+.+.|+++.|+++|.+. .+..
T Consensus       269 ~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~  348 (457)
T d1xm9a1         269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV  348 (457)
T ss_dssp             CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHH
T ss_pred             hhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHH
Confidence                                     1 123344566777888776543      244456789999999999865 4457


Q ss_pred             HHHHHHHHHcCCcHHHHHH--cCchHHHHHHHhc------CChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHH
Q 048793          561 VTILEAVVKRGGLTAIVAA--YNTIKKLCILLRE------GSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWE  632 (683)
Q Consensus       561 ~~aL~~L~~l~~~~e~~~~--~g~v~~Lv~lL~~------~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~  632 (683)
                      ..++..|.+++.+.+....  .++++.++.+|..      .++.++..|+.+|.+|+.++++  .++.+.+.|+++.|+.
T Consensus       349 ~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~g~i~~L~~  426 (457)
T d1xm9a1         349 RSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ--LAKQYFSSSMLNNIIN  426 (457)
T ss_dssp             HHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH--HHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHH--HHHHHHHCCCHHHHHH
Confidence            7777777777655443322  2578889888753      2456889999999999986553  4556788899999999


Q ss_pred             Hhhc-CCHHHHHHHHHHHHHHHhhh
Q 048793          633 LMES-GTARARRKAAALLRILRRWA  656 (683)
Q Consensus       633 Ll~~-~~~~~k~kA~~lL~~l~~~~  656 (683)
                      ++.+ +++++++.|..+|.+|..+.
T Consensus       427 l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         427 LCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            9876 47899999999999995443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-15  Score=154.76  Aligned_cols=186  Identities=19%  Similarity=0.130  Sum_probs=158.6

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHH-hhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLAR-HLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGAL  462 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~-lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I  462 (683)
                      +.+.+..|+..|..++.+ .+|+..+...|+++.|+. +|.++    +++++..|+.+|.+++.+ +..+..+.+. |++
T Consensus        30 ~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~----~~~vr~~A~~~L~~l~~~~~~~~~~~~~~-~~i  103 (264)
T d1xqra1          30 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAG----AAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GAL  103 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THH
T ss_pred             CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHc-Cch
Confidence            678889999999999964 568889999999999986 78888    999999999999999986 4567777787 999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhcC-CcchhHHH
Q 048793          463 NGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLAG-DRETVGRL  540 (683)
Q Consensus       463 ~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~i  540 (683)
                      +.|+.+|.+..+++++..|+++|.+++.... ++..+.. .|+++.|+.+|.+++...+..++++|.||+. +++++..+
T Consensus       104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (264)
T d1xqra1         104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL  182 (264)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHH
Confidence            9999999876578999999999999997655 5666666 8999999999999999999999999999986 56789999


Q ss_pred             HhcCchHHHHHHhccC-chhHHHHHHHHHHcCC-cHHHH
Q 048793          541 VERGIVEIVAEAMDVL-PEESVTILEAVVKRGG-LTAIV  577 (683)
Q Consensus       541 v~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~-~~e~~  577 (683)
                      +++|+++.|+.+|.+. ++..+.++.+|.+++. +++..
T Consensus       183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~  221 (264)
T d1xqra1         183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  221 (264)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999854 5567788888877664 34443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=146.30  Aligned_cols=181  Identities=14%  Similarity=0.099  Sum_probs=151.5

Q ss_pred             ChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCc-chhhHHhhhcccHHHH
Q 048793          431 LPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIE-VLRSGATWEAKGNAAATIFSLSGVH-AHRKTLGRKTRVVKGL  508 (683)
Q Consensus       431 d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~-lL~~~~~~~~~~~Aa~~L~~Ls~~~-~~~~~i~~~~G~i~~L  508 (683)
                      +.+.++.|+.+|.+|+.+.+++..+... |++++++. +|+++ +.+++..|+.+|.+++.+. ..+..+.. .|+++.|
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~-gg~~~ll~~ll~s~-~~~vr~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~L  106 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQL-SGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHT-THHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHc-CCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHH
Confidence            6778899999999999999999999998 99999886 56666 7999999999999999865 46666766 8999999


Q ss_pred             HHhhcC-CChhHHHHHHHHHHHhcCCc-chhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcC----CcHHHHHHcC
Q 048793          509 MDLVKG-GPTSSKRDALVAILNLAGDR-ETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRG----GLTAIVAAYN  581 (683)
Q Consensus       509 v~lL~~-~~~~~~~~A~~aL~nLs~~~-~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~----~~~e~~~~~g  581 (683)
                      +.+|.+ .++.++..|+++|.+|+.+. .++..+++.|+++.|+++|.+. ......++..|.+++    .........|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            999975 45778999999999999765 4677888999999999999865 344666667666644    2344556668


Q ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHHHhcCCc
Q 048793          582 TIKKLCILLREGSDTSRESAAATLVTICRKGGS  614 (683)
Q Consensus       582 ~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~  614 (683)
                      +++.|+.+|.+.++..++.|+++|++|+..++.
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999999986544

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.6e-14  Score=108.43  Aligned_cols=52  Identities=19%  Similarity=0.408  Sum_probs=47.2

Q ss_pred             ccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcch
Q 048793          277 FRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTN  329 (683)
Q Consensus       277 f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn  329 (683)
                      +.||||+++|+|||++ .|||+|||+||.+|+.+ +.+||.||+++...+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999988 59999999999999997 5689999999999888764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.8e-13  Score=112.70  Aligned_cols=62  Identities=18%  Similarity=0.306  Sum_probs=53.2

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCc-chHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLV-TNTALKNLI  336 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~-pn~~l~~~i  336 (683)
                      +++.||||+++|.|||+++|||+||+.||++|++.++.+||.||.++...++. |..++.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            34589999999999999999999999999999987778999999999877766 566655543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-13  Score=115.89  Aligned_cols=65  Identities=20%  Similarity=0.430  Sum_probs=56.6

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcC--CCCCCCCCCccCCCCCcchHHHHHHHHHH
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESG--HNTCPKTGQTLAHTNLVTNTALKNLIALW  339 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  339 (683)
                      +.+.||||+++|.|||+++|||+||+.||.+|+...  ...||.|++++...++.+|..+.++++++
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l   86 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEEL   86 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHH
Confidence            567899999999999999999999999999999753  35899999999988899987776666655

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.3e-13  Score=112.47  Aligned_cols=66  Identities=21%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             CCCcccccccccCCCCceec-CCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcchHHHHHHHHHHHH
Q 048793          273 VPADFRCPISLELMRNPVVV-ATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVTNTALKNLIALWCR  341 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dPv~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  341 (683)
                      +.+.+.||||+++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.+|..+.++++.+..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            45778999999999999975 89999999999999853   59999999998999999999999887643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.1e-11  Score=96.14  Aligned_cols=50  Identities=20%  Similarity=0.279  Sum_probs=45.3

Q ss_pred             cccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCC
Q 048793          276 DFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTN  325 (683)
Q Consensus       276 ~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~  325 (683)
                      ...||||++.+.|||+++|||+||+.||.+|+..++.+||.||+.+...+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34699999999999999999999999999999877789999999987654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.5e-10  Score=84.26  Aligned_cols=50  Identities=12%  Similarity=0.097  Sum_probs=42.7

Q ss_pred             CcccccccccCCCCceecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCCcc
Q 048793          275 ADFRCPISLELMRNPVVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNLVT  328 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l~p  328 (683)
                      +.+.||||++.+.||++++|||+|++.||++|    ..+||.||+++....-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            34689999999999999999999999999765    568999999987654443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1e-09  Score=85.29  Aligned_cols=52  Identities=25%  Similarity=0.455  Sum_probs=42.9

Q ss_pred             CcccccccccCCCCc-----eecCCccccchhhHHHHHhcCCCCCCCCCCccCCCCC
Q 048793          275 ADFRCPISLELMRNP-----VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAHTNL  326 (683)
Q Consensus       275 ~~f~CPis~~~m~dP-----v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~~~l  326 (683)
                      ++..||||++.+..+     ++++|||+|++.||++|+..+..+||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            567899999865322     5669999999999999998877889999999876554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.62  E-value=1e-08  Score=80.27  Aligned_cols=43  Identities=28%  Similarity=0.496  Sum_probs=38.9

Q ss_pred             ccccccCCCCcee-cCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          279 CPISLELMRNPVV-VATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       279 CPis~~~m~dPv~-~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      ||||++.+.+|++ ++|||+|+..||++|++. +.+||.||+++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999998865 699999999999999987 678999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.9e-08  Score=72.45  Aligned_cols=46  Identities=15%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             cccccccCCCCc----eecCCccccchhhHHHHHhcCCCCCCCCCCccCC
Q 048793          278 RCPISLELMRNP----VVVATGQTYDRQSISLWIESGHNTCPKTGQTLAH  323 (683)
Q Consensus       278 ~CPis~~~m~dP----v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~~  323 (683)
                      -||||++-|.++    ++.+|||+|++.||.+|++.++.+||.||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            499999988543    3458999999999999998777789999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.7e-05  Score=85.14  Aligned_cols=255  Identities=12%  Similarity=0.062  Sum_probs=164.1

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhcc--CchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKT--DSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~--~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .+|.|.+.+..  +.+++..++..|..+...  ++++     -...+|.|..++..+    +..+++.|+.+|..++..-
T Consensus        50 lip~l~~~~~~--~~ev~~~~~~~l~~~~~~~~~~~~-----~~~ll~~l~~l~~~~----~~~Vr~~a~~~l~~i~~~~  118 (588)
T d1b3ua_          50 LLPFLTDTIYD--EDEVLLALAEQLGTFTTLVGGPEY-----VHCLLPPLESLATVE----ETVVRDKAVESLRAISHEH  118 (588)
T ss_dssp             HHHHHHHTCCC--CHHHHHHHHHHHTTCSGGGTSGGG-----GGGGHHHHHHHTTSS----CHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHcCChhH-----HHHHHHHHHHHccCC----CHHHHHHHHHHHHHHHHhC
Confidence            45666665543  345666666666655432  1111     124567777777777    8889999999888887543


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      ... .+ .. -.+|.+..+..+. ....|..|+..+..+...-...  ..  ...++.+..++.+.++.+++.|+.++..
T Consensus       119 ~~~-~~-~~-~l~p~i~~L~~~~-~~~~r~~a~~ll~~~~~~~~~~--~~--~~l~~~~~~l~~D~~~~VR~~a~~~l~~  190 (588)
T d1b3ua_         119 SPS-DL-EA-HFVPLVKRLAGGD-WFTSRTSACGLFSVCYPRVSSA--VK--AELRQYFRNLCSDDTPMVRRAAASKLGE  190 (588)
T ss_dssp             CHH-HH-HH-THHHHHHHHHTCS-SHHHHHHHGGGHHHHTTTSCHH--HH--HHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             CHH-HH-HH-HHHHHHHHHhccc-chHHHHHHHHHHHHHHHHhhHH--HH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            222 22 22 3455444454443 5667777777776665432221  11  2457788888998899999999999999


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCch-h---HHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHH
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPE-E---SVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATL  605 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~-~---~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL  605 (683)
                      ++..-+..  ......++.+..++.+... .   +..++..+....+......  ..++.+..++...+.++|..++.+|
T Consensus       191 ~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~--~i~~~l~~~~~D~~~~Vr~~~~~~l  266 (588)
T d1b3ua_         191 FAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA--LVMPTLRQAAEDKSWRVRYMVADKF  266 (588)
T ss_dssp             HHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH--HTHHHHHHHHTCSSHHHHHHHHHTH
T ss_pred             HHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHH--HHHHHHHHhcccccHHHHHHHHHhH
Confidence            98754322  2334566777777775432 2   4444444444333332222  2467777788888999999999999


Q ss_pred             HHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          606 VTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       606 ~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ..++...+.+..     ...+++.+..++.+..+.+|..|...+..+.+
T Consensus       267 ~~l~~~~~~~~~-----~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         267 TELQKAVGPEIT-----KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHHHHHCHHHH-----HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhh-----hhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999875443321     23578999999999999999999988877655

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.39  E-value=9.3e-08  Score=71.15  Aligned_cols=48  Identities=21%  Similarity=0.611  Sum_probs=39.8

Q ss_pred             CCCcccccccccCCCCc--e-ec-CCccccchhhHHHHHhcCCCCCCCCCCcc
Q 048793          273 VPADFRCPISLELMRNP--V-VV-ATGQTYDRQSISLWIESGHNTCPKTGQTL  321 (683)
Q Consensus       273 ~p~~f~CPis~~~m~dP--v-~~-~~g~ty~r~~I~~w~~~g~~~cP~~~~~l  321 (683)
                      +.++..||||++-+.+.  + .+ +|||+|...||.+|+.. +.+||.||+++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            34677899999999753  3 33 69999999999999986 67999999865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.7e-05  Score=86.79  Aligned_cols=169  Identities=12%  Similarity=0.158  Sum_probs=119.0

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      ..+.+.+++.+. ++.+|..|+..+..+++.-..   .......+|.+..++.+.    +..++..|+.++..++..-..
T Consensus       165 l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~----~~~vr~~a~~~l~~i~~~~~~  236 (588)
T d1b3ua_         165 LRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDE----QDSVRLLAVEACVNIAQLLPQ  236 (588)
T ss_dssp             HHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCS----CHHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCC----chhhHHHHHHHHHHhhccCCH
Confidence            456666777777 999999999999999875431   223457788899999888    999999999999988643211


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHHhc
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILNLA  531 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  531 (683)
                      .. . .. -.++.+..+++.. +..+|..++.+|..++..-...  +.. ...++.+..++.+.++.++..|+.+|..++
T Consensus       237 ~~-~-~~-~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~--~~~-~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         237 ED-L-EA-LVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE--ITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             HH-H-HH-HTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH--HHH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HH-H-HH-HHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh--hhh-hhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            11 1 11 3577778888766 7999999999999987543222  222 468999999999999999999999998887


Q ss_pred             CCc--chhHHHHhcCchHHHHHHhcc
Q 048793          532 GDR--ETVGRLVERGIVEIVAEAMDV  555 (683)
Q Consensus       532 ~~~--~n~~~iv~aG~V~~Lv~lL~~  555 (683)
                      ..-  .......-...++.+..++.+
T Consensus       310 ~~l~~~~~~~~~~~~i~~~l~~~~~d  335 (588)
T d1b3ua_         310 ENLSADCRENVIMSQILPCIKELVSD  335 (588)
T ss_dssp             HTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHhhcC
Confidence            532  222222223455555555554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=6.5e-05  Score=73.00  Aligned_cols=228  Identities=10%  Similarity=0.015  Sum_probs=140.7

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      +...+.|++.|.++ ++.++..|+..|..+..           ..++|.|+.+|.++    ++.++..|+.+|..+....
T Consensus        18 ~~~~~~L~~~L~d~-~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~----~~~vr~~a~~aL~~l~~~~   81 (276)
T d1oyza_          18 KLNDDELFRLLDDH-NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK----NYIRRDIGAFILGQIKICK   81 (276)
T ss_dssp             TSCHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS----SHHHHHHHHHHHHHSCCCT
T ss_pred             cCCHHHHHHHhcCC-CHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCC----CHHHHHHHHHHHHHhcccc
Confidence            34566789999998 99999999999976632           24689999999998    9999999999999886543


Q ss_pred             hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          450 ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       450 ~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      .....      .++.+...+-+..++.++..|+.+|..++......    . ...++.+...+.+.++.++..|+.++..
T Consensus        82 ~~~~~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          82 KCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----S-PKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             TTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----H-HHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             ccccc------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----h-HHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence            33222      23344444443347999999999999887543221    1 3467788888888888888888877766


Q ss_pred             hcCCcchhHHHHhcCchHHHHHHhccCchh-HHHHHHHHHHcC-CcH---------------HHH-------HH---cCc
Q 048793          530 LAGDRETVGRLVERGIVEIVAEAMDVLPEE-SVTILEAVVKRG-GLT---------------AIV-------AA---YNT  582 (683)
Q Consensus       530 Ls~~~~n~~~iv~aG~V~~Lv~lL~~~~~~-~~~aL~~L~~l~-~~~---------------e~~-------~~---~g~  582 (683)
                      +..          ...++.++.++...... ...+...+.... ...               ...       ..   ...
T Consensus       151 ~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  220 (276)
T d1oyza_         151 IND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV  220 (276)
T ss_dssp             C-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGG
T ss_pred             cch----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhh
Confidence            432          23444555555432211 111111111111 000               000       00   123


Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhc-CCHHHHHHHHHHH
Q 048793          583 IKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMES-GTARARRKAAALL  649 (683)
Q Consensus       583 v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~-~~~~~k~kA~~lL  649 (683)
                      ++.|++.+.  ++.++..|+.+|..+..             .++++.|..++.. ++..++..|...|
T Consensus       221 ~~~L~~~l~--d~~vr~~a~~aL~~ig~-------------~~~~~~L~~~l~~~~d~~vr~~A~~~L  273 (276)
T d1oyza_         221 LSVLCDELK--KNTVYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKL  273 (276)
T ss_dssp             HHHHHHHHT--SSSCCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhC--ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            555666554  33466667776655431             2456777776655 4677887776655

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=8.8e-07  Score=76.38  Aligned_cols=53  Identities=13%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             CCCCCcccccccccCCCCc------------------eecCCccccchhhHHHHHhc----CCCCCCCCCCccCC
Q 048793          271 ANVPADFRCPISLELMRNP------------------VVVATGQTYDRQSISLWIES----GHNTCPKTGQTLAH  323 (683)
Q Consensus       271 ~~~p~~f~CPis~~~m~dP------------------v~~~~g~ty~r~~I~~w~~~----g~~~cP~~~~~l~~  323 (683)
                      +..+.+..||||++-|.++                  .+++|||.|+..||.+|+..    |+.+||.||..+..
T Consensus        20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             hcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            3445567899999988764                  35799999999999999974    35689999987643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.88  E-value=4.5e-06  Score=62.97  Aligned_cols=48  Identities=23%  Similarity=0.343  Sum_probs=41.4

Q ss_pred             CcccccccccCCCCceecCCc-----cccchhhHHHHHhc-CCCCCCCCCCccC
Q 048793          275 ADFRCPISLELMRNPVVVATG-----QTYDRQSISLWIES-GHNTCPKTGQTLA  322 (683)
Q Consensus       275 ~~f~CPis~~~m~dPv~~~~g-----~ty~r~~I~~w~~~-g~~~cP~~~~~l~  322 (683)
                      +...|+||++-+.++.+.+|+     |.|.+.||++|+.. ++.+||.|++++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            556799999999999888764     99999999999974 6789999998864

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00029  Score=72.84  Aligned_cols=275  Identities=9%  Similarity=0.057  Sum_probs=164.5

Q ss_pred             hHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCch
Q 048793          372 TASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEA  450 (683)
Q Consensus       372 ~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~  450 (683)
                      .++.++..+.++ .+...+..++..+..++.........-.-...++.++..+.+..  .+..++..|+.++.++.....
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~--~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTTTH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHHHHHhhh
Confidence            456677777653 25566777777777766544322211112346777888887641  156789999999988875422


Q ss_pred             h--HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc--hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHH
Q 048793          451 N--KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA--HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVA  526 (683)
Q Consensus       451 ~--k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~--~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~a  526 (683)
                      .  ....... ...+.+...+.+. +++.+..++.+|..+.....  ....+.  ....+.+...+.+.++..+..|+..
T Consensus       206 ~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~a~~~  281 (458)
T d1ibrb_         206 ANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSDIDEVALQGIEF  281 (458)
T ss_dssp             HHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTT--TTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             hhhhhHHHHH-HhHhhHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhccccHHHHHHHHHH
Confidence            1  1111121 3455666666666 79999999999998875432  122221  2334445566677777888888888


Q ss_pred             HHHhcCCcch---------------------hHHHHhcCchHHHHHHhccC-----c---hh---HHHHHHHHHHcCCcH
Q 048793          527 ILNLAGDRET---------------------VGRLVERGIVEIVAEAMDVL-----P---EE---SVTILEAVVKRGGLT  574 (683)
Q Consensus       527 L~nLs~~~~n---------------------~~~iv~aG~V~~Lv~lL~~~-----~---~~---~~~aL~~L~~l~~~~  574 (683)
                      +..++.....                     .....-...++.+.+.+.+.     .   ..   +..++..++...+..
T Consensus       282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~  361 (458)
T d1ibrb_         282 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD  361 (458)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh
Confidence            8877632110                     00111122344455554311     1   11   444555554433322


Q ss_pred             HHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          575 AIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       575 e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                       ...  ...+.+...+.+.+.+.|+.|+.+|..++...........  -..+++.|..++++.++++|..|.+.|..+.+
T Consensus       362 -~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         362 -IVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             -HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             -hhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             111  1234555666778889999999999888864332222221  24688999999999999999999999999888


Q ss_pred             hhc
Q 048793          655 WAA  657 (683)
Q Consensus       655 ~~~  657 (683)
                      +-.
T Consensus       437 ~~~  439 (458)
T d1ibrb_         437 LLP  439 (458)
T ss_dssp             HGG
T ss_pred             Hhh
Confidence            653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=0.0034  Score=65.58  Aligned_cols=272  Identities=13%  Similarity=0.083  Sum_probs=174.3

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHh-CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHH
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEA-GAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKT  453 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~-G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~  453 (683)
                      .+...|.++ +.-....+...+..++..+..+....-.. .....+-.+..++    +...+.-|+..|..|...+..|.
T Consensus       126 ~f~~~l~~~-d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~----~~~~~~i~v~~lq~llr~~~~R~  200 (477)
T d1ho8a_         126 LFDVSLKGD-FQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIE----QMDTCYVCIRLLQELAVIPEYRD  200 (477)
T ss_dssp             HHHHCSCSS-HHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTT----CHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHhccCc-hhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhccc----ccchHHHHHHHHHHHhcCccHHH
Confidence            344556555 66666677777777776654333321111 1222333344556    88888889999999999999998


Q ss_pred             HHhcc-cCcHHHHHHHHhc----------------CCCHHHHHHHHHHHHHhhcCcchhhHHhhh-cccHHHHHHhhcCC
Q 048793          454 RIMET-EGALNGVIEVLRS----------------GATWEAKGNAAATIFSLSGVHAHRKTLGRK-TRVVKGLMDLVKGG  515 (683)
Q Consensus       454 ~I~~~-~G~I~~Lv~lL~~----------------~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~-~G~i~~Lv~lL~~~  515 (683)
                      .+... ...+++++.+|+.                +.+.+..-+++-+++-||..++....+... .+.|+.|+++++..
T Consensus       201 ~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         201 VIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            87642 1467888888864                112467788999999999988877777652 25699999999765


Q ss_pred             C-hhHHHHHHHHHHHhcCCcc--h----hHHHHhcCchHHHHHHhccC---chhHHHHHHHHH--------HcCCcHHHH
Q 048793          516 P-TSSKRDALVAILNLAGDRE--T----VGRLVERGIVEIVAEAMDVL---PEESVTILEAVV--------KRGGLTAIV  577 (683)
Q Consensus       516 ~-~~~~~~A~~aL~nLs~~~~--n----~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~--------~l~~~~e~~  577 (683)
                      . ..+.+-++.+|.||+....  +    ...|+..++.+. ++.|...   .+....-+..|.        .+++-.+-.
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4 5688999999999987532  2    334566666655 5555421   222222222221        122111111


Q ss_pred             HH------------------------c-----CchHHHHHHHhc----------CChHHHHHHHHHHHHHHhcCCchHHH
Q 048793          578 AA------------------------Y-----NTIKKLCILLRE----------GSDTSRESAAATLVTICRKGGSEMVA  618 (683)
Q Consensus       578 ~~------------------------~-----g~v~~Lv~lL~~----------~s~~~ke~A~~aL~~L~~~~~~~~~~  618 (683)
                      .+                        .     ..+..|+++|..          .++.+..-|+.=+..+|++.+.  .+
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~--gr  437 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE--SI  437 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT--HH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcc--hh
Confidence            11                        1     115567777752          2444556677778888888775  35


Q ss_pred             HHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          619 DIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       619 ~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      .++...|+=..+..|+.+.++++|..|...++.+=.
T Consensus       438 ~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         438 DVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            567777999999999999999999999888776533

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.00075  Score=77.33  Aligned_cols=270  Identities=11%  Similarity=0.063  Sum_probs=162.4

Q ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC--ch
Q 048793          373 ASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL--EA  450 (683)
Q Consensus       373 i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~--~~  450 (683)
                      ++.+.+.+.+. ++..|..|+.++..++....+.-.... ...+|.|+..|.+.    ++.++..|+++|..++..  +.
T Consensus       397 l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~----~~~Vr~~a~~~l~~~~~~~~~~  470 (888)
T d1qbkb_         397 LPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK----KALVRSITCWTLSRYAHWVVSQ  470 (888)
T ss_dssp             HHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSS----CHHHHHHHHHHHHHTHHHHHSS
T ss_pred             HHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCC----CHHHHHHHHHHHHHHHHHhhhh
Confidence            45555667777 899999999999988765432211111 24688899999988    999999999999998742  12


Q ss_pred             hHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc-hhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHHH
Q 048793          451 NKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA-HRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAILN  529 (683)
Q Consensus       451 ~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~-~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~n  529 (683)
                      .......  ..++.++..+.++ ++.++..|+++|.+++.... .-....  ...++.|+..+..........+..++..
T Consensus       471 ~~~~~~~--~~l~~ll~~l~d~-~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~  545 (888)
T d1qbkb_         471 PPDTYLK--PLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGT  545 (888)
T ss_dssp             CHHHHTT--THHHHHHHHHSSS-CHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             hhhhhhh--hhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            2222322  5788899888877 69999999999999975322 111111  3567888888887766666666666666


Q ss_pred             hcCC---cchhHHHHhcCchHHHHHHhcc---Cchh---HHHHHHHHHHcCCcH--HHHHH-c-CchHHHHHHH------
Q 048793          530 LAGD---RETVGRLVERGIVEIVAEAMDV---LPEE---SVTILEAVVKRGGLT--AIVAA-Y-NTIKKLCILL------  590 (683)
Q Consensus       530 Ls~~---~~n~~~iv~aG~V~~Lv~lL~~---~~~~---~~~aL~~L~~l~~~~--e~~~~-~-g~v~~Lv~lL------  590 (683)
                      ++..   .-+.....+ ..++.+++....   +...   ..++++.+....+..  ..... . ..+..+...+      
T Consensus       546 l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  624 (888)
T d1qbkb_         546 LADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN  624 (888)
T ss_dssp             HHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6432   112222222 244555554431   1212   334555554322211  11100 0 0011111111      


Q ss_pred             --h-----cCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          591 --R-----EGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       591 --~-----~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                        .     .........+..++..+....+.. ....+....+++.+...+++.++.+++.|..++.-+...
T Consensus       625 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~  695 (888)
T d1qbkb_         625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN-IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA  695 (888)
T ss_dssp             HHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTT-THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccchhHHHHHHHHHHHHHHHHHhhhh-hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence              0     112344556666666666543332 344455667888899999999999999999998877663

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.2e-05  Score=65.66  Aligned_cols=32  Identities=16%  Similarity=0.446  Sum_probs=27.8

Q ss_pred             eecCCccccchhhHHHHHhcCCCCCCCCCCccC
Q 048793          290 VVVATGQTYDRQSISLWIESGHNTCPKTGQTLA  322 (683)
Q Consensus       290 v~~~~g~ty~r~~I~~w~~~g~~~cP~~~~~l~  322 (683)
                      ++.+|||.|...||.+|++. +.+||.||++..
T Consensus        53 ~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          53 AWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             EEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             EEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            34589999999999999987 678999998754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00025  Score=83.86  Aligned_cols=269  Identities=12%  Similarity=0.078  Sum_probs=166.2

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .+..|++.+.+. |++.|.-|+..|......+...-..=....+++.|+.+|...    ++++|..|+.+|..+...-..
T Consensus         4 ~~~~ll~k~~~~-D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~----~~~Vq~~A~k~l~~l~~~~~~   78 (1207)
T d1u6gc_           4 HISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK----NGEVQNLAVKCLGPLVSKVKE   78 (1207)
T ss_dssp             HHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS----SHHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHHhcCCC-CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhCcH
Confidence            356788999998 999999999888865433221111111234788999999988    999999999999988754222


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----cch---hhHHhhhcccHHHHHHhhcCC-ChhHHHHH
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV----HAH---RKTLGRKTRVVKGLMDLVKGG-PTSSKRDA  523 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~----~~~---~~~i~~~~G~i~~Lv~lL~~~-~~~~~~~A  523 (683)
                        ..+.  ..++.|+..+.++ +...+..+..+|..+...    ..+   ...+.  ...++.|...+.+. +..++..|
T Consensus        79 --~~~~--~l~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~~a  151 (1207)
T d1u6gc_          79 --YQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEA  151 (1207)
T ss_dssp             --HHHH--HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             --hhHH--HHHHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHHHH
Confidence              1222  3566777777666 567787777777665421    111   11111  23445555544443 45678888


Q ss_pred             HHHHHHhcCCcchhHHHHhcCchHHHHHHhccC-chhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHh-cCChHHHHHH
Q 048793          524 LVAILNLAGDRETVGRLVERGIVEIVAEAMDVL-PEESVTILEAVVKRGGLTAIVAAYNTIKKLCILLR-EGSDTSRESA  601 (683)
Q Consensus       524 ~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~-~~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~-~~s~~~ke~A  601 (683)
                      +.+|..+....++--.-....+++.|+..|.+. ......|+..|..+........-...++.++..+. +.+...+..+
T Consensus       152 l~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~  231 (1207)
T d1u6gc_         152 LDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTY  231 (1207)
T ss_dssp             HHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence            988888765332211001123456666666643 33455666666655432111111123566666554 4456667778


Q ss_pred             HHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          602 AATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       602 ~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      +.+|..++...+... ...  -..+++.+...+.+.++.+++.|...+..+-..
T Consensus       232 ~~~l~~l~~~~~~~~-~~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~  282 (1207)
T d1u6gc_         232 IQCIAAISRQAGHRI-GEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  282 (1207)
T ss_dssp             HHHHHHHHHHSSGGG-TTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcchhh-HHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence            888889988766432 111  256889999999999999999999988888663

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.0031  Score=60.52  Aligned_cols=207  Identities=12%  Similarity=0.000  Sum_probs=124.7

Q ss_pred             HhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 048793          412 EAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV  491 (683)
Q Consensus       412 ~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~  491 (683)
                      +....+.|+.+|.++    ++.++..|+.+|..+.          .. .+++.|+.+|++. ++.++..|+.+|..+...
T Consensus        17 ~~~~~~~L~~~L~d~----~~~vR~~A~~~L~~~~----------~~-~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          17 KKLNDDELFRLLDDH----NSLKRISSARVLQLRG----------GQ-DAVRLAIEFCSDK-NYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             HTSCHHHHHHHTTCS----SHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCC
T ss_pred             ccCCHHHHHHHhcCC----CHHHHHHHHHHHHhhC----------CH-hHHHHHHHHHcCC-CHHHHHHHHHHHHHhccc
Confidence            345677899999999    9999999999987653          22 5789999999988 799999999999988654


Q ss_pred             cchhhHHhhhcccHHHHHH-hhcCCChhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhccCc-hhHHHHHHHHHH
Q 048793          492 HAHRKTLGRKTRVVKGLMD-LVKGGPTSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMDVLP-EESVTILEAVVK  569 (683)
Q Consensus       492 ~~~~~~i~~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~-~~~~~aL~~L~~  569 (683)
                      ......      .++.|.. ++++.++.++..|+.+|.+++......    ....++.+...+.+.. .....++..+..
T Consensus        81 ~~~~~~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          81 KKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             TTTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             cccccc------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence            333222      2344444 456778889999999999987644322    1234566666666433 233334444433


Q ss_pred             cCCcHHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCc--------------hH---HHH---HHhcCCcHHH
Q 048793          570 RGGLTAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGS--------------EM---VAD---IAAVPGIERV  629 (683)
Q Consensus       570 l~~~~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~--------------~~---~~~---~~~~~G~~~~  629 (683)
                      ...       ...++.+..++.......+..+..++..+......              ..   ...   .+....+++.
T Consensus       151 ~~~-------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  223 (276)
T d1oyza_         151 IND-------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSV  223 (276)
T ss_dssp             C----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             cch-------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHH
Confidence            211       12345555555555555555555444433321110              00   000   0112235666


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          630 IWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       630 L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      |...+.+.  .+|..|.+.|..+.
T Consensus       224 L~~~l~d~--~vr~~a~~aL~~ig  245 (276)
T d1oyza_         224 LCDELKKN--TVYDDIIEAAGELG  245 (276)
T ss_dssp             HHHHHTSS--SCCHHHHHHHHHHC
T ss_pred             HHHHhCCh--HHHHHHHHHHHHcC
Confidence            76666543  46677777776664

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.33  E-value=0.0003  Score=59.09  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchhHHHHhcccCcHHH
Q 048793          385 SMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEANKTRIMETEGALNG  464 (683)
Q Consensus       385 ~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~k~~I~~~~G~I~~  464 (683)
                      |+.+|..|++.|..+.            ..+++.|+..|.++    ++.++..|+.+|.++.          . +++++.
T Consensus         5 ~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~----~~~vR~~a~~~L~~~~----------~-~~~~~~   57 (111)
T d1te4a_           5 NKWVRRDVSTALSRMG------------DEAFEPLLESLSNE----DWRIRGAAAWIIGNFQ----------D-ERAVEP   57 (111)
T ss_dssp             CCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS----CHHHHHHHHHHHGGGC----------S-HHHHHH
T ss_pred             CHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC----CHHHHHHHHHHHHhcc----------h-hhhHHH
Confidence            4455555555554331            24678899999998    9999999999997753          2 257899


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHHHHHHHH
Q 048793          465 VIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRDALVAIL  528 (683)
Q Consensus       465 Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~  528 (683)
                      |+.+|++. ++.+|..|+.+|..+          +. .++++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~d~-~~~VR~~a~~aL~~i----------~~-~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDD-SGFVRSGAARSLEQI----------GG-ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHC-CTHHHHHHHHHHHHH----------CS-HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccc-hhHHHHHHHHHHHHh----------Cc-cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999988 799999999999865          33 578999999999999999999988874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0026  Score=74.75  Aligned_cols=230  Identities=10%  Similarity=0.074  Sum_probs=149.9

Q ss_pred             hhhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc--
Q 048793          370 KMTASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI--  447 (683)
Q Consensus       370 ~~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~--  447 (683)
                      +..++.|++.|... ++++|..|+.+|..++..-.+..   . ...++.|+..+.+.    +...+..+..+|..+..  
T Consensus        44 ~~i~~~ll~~L~D~-~~~Vq~~A~k~l~~l~~~~~~~~---~-~~l~~~L~~~l~~~----~~~~r~~~~~~L~~i~~~l  114 (1207)
T d1u6gc_          44 RKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQ---V-ETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGEL  114 (1207)
T ss_dssp             HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSCHHH---H-HHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCcHhh---H-HHHHHHHHHHhcCC----chhhhHHHHHHHHHHHHhc
Confidence            44678899999888 99999999999999987655332   1 24677888877776    77788888777765531  


Q ss_pred             --Cc---hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCChhHHHH
Q 048793          448 --LE---ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGPTSSKRD  522 (683)
Q Consensus       448 --~~---~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~~~~~~~  522 (683)
                        ..   .....+..  ..++.+...+.+..+...+..|+.+|..+......-..-.. ..+++.|+..|.+.+..+++.
T Consensus       115 ~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~  191 (1207)
T d1u6gc_         115 PPASSGSALAANVCK--KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKR  191 (1207)
T ss_dssp             C-----CCTHHHHHH--HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHH
T ss_pred             ccccccchhHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHH
Confidence              11   11112222  24555555565555678888899888887653221111011 357888888899888889999


Q ss_pred             HHHHHHHhcCCcchhHHHHhcCchHHHHHHhccC--c---hhHHHHHHHHHHcCCcHHHHHHcCchHHHHHHHhcCChHH
Q 048793          523 ALVAILNLAGDRETVGRLVERGIVEIVAEAMDVL--P---EESVTILEAVVKRGGLTAIVAAYNTIKKLCILLREGSDTS  597 (683)
Q Consensus       523 A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~--~---~~~~~aL~~L~~l~~~~e~~~~~g~v~~Lv~lL~~~s~~~  597 (683)
                      |+.+|..|+.+-...   .-...++.+++.+..+  .   .....+++.++...+..-...-...++.+.+.+...++..
T Consensus       192 A~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~  268 (1207)
T d1u6gc_         192 TIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL  268 (1207)
T ss_dssp             HHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred             HHHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHH
Confidence            999999997753321   1123467777766532  1   2255667777664443211111134677778888889999


Q ss_pred             HHHHHHHHHHHHhcCCc
Q 048793          598 RESAAATLVTICRKGGS  614 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~  614 (683)
                      ++.|..+|..++...+.
T Consensus       269 r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         269 REYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            99999999998876553

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0045  Score=70.59  Aligned_cols=271  Identities=11%  Similarity=0.029  Sum_probs=152.9

Q ss_pred             hhHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchh-HHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          371 MTASFLINKLATSQSMEAANDAVYELRSLSKTDSDS-RACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       371 ~~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~n-r~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      ..++.|+..|.+. ++.+|..|++.|..++...... .... -...++.|+..+.+.    ++.+++.|+.+|.++....
T Consensus       436 ~li~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~----~~~V~~~a~~al~~l~~~~  509 (888)
T d1qbkb_         436 ELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDS----NKRVQEAACSAFATLEEEA  509 (888)
T ss_dssp             HHHHHHHHHTTSS-CHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSS----CHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHh
Confidence            3567888888888 9999999999999887532111 1111 246888899888888    8999999999999987431


Q ss_pred             hh-HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---cchhhHHhhhcccHHHHHHhhcC--CChhHHHHH
Q 048793          450 AN-KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGV---HAHRKTLGRKTRVVKGLMDLVKG--GPTSSKRDA  523 (683)
Q Consensus       450 ~~-k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~---~~~~~~i~~~~G~i~~Lv~lL~~--~~~~~~~~A  523 (683)
                      .. -....  +..++.++..+... +...+..+..++..++..   .-.+..+.  ...++.+......  .+.......
T Consensus       510 ~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~  584 (888)
T d1qbkb_         510 CTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLFPL  584 (888)
T ss_dssp             TTSSGGGH--HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHGGGGCSHHHH--HHHHHHHHHHHTTSCTTCTTHHHH
T ss_pred             hhhhhhHH--HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhhccccchHHH--HHHHHHHHHHHHhcccchHHHHHH
Confidence            11 01111  13566666666665 456666666666666532   11222222  2345555555432  122233344


Q ss_pred             HHHHHHhcCC-cchhHHHHh---cCchHHHHHHh--------cc------CchhHHHHHHHHHHcC----Cc-HHHHHHc
Q 048793          524 LVAILNLAGD-RETVGRLVE---RGIVEIVAEAM--------DV------LPEESVTILEAVVKRG----GL-TAIVAAY  580 (683)
Q Consensus       524 ~~aL~nLs~~-~~n~~~iv~---aG~V~~Lv~lL--------~~------~~~~~~~aL~~L~~l~----~~-~e~~~~~  580 (683)
                      +.+|..++.. .++......   .-++..+...+        ..      ..+....++..+..+.    .. .......
T Consensus       585 le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~  664 (888)
T d1qbkb_         585 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS  664 (888)
T ss_dssp             HHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS
T ss_pred             HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence            5555554331 111111100   01111111111        11      1122333443333221    11 1222222


Q ss_pred             CchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 048793          581 NTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRRW  655 (683)
Q Consensus       581 g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~  655 (683)
                      .-.+.+...+...++.+++.|..++..++...+.. ....+  ..+++.|..-+.+....++..|.+.+.-+...
T Consensus       665 ~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~-~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         665 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH-VKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             CHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG-TGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH-HHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence            33566667778889999999999999898765542 22222  23677777777788889999999999877654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.014  Score=64.70  Aligned_cols=263  Identities=13%  Similarity=0.087  Sum_probs=157.1

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh--H
Q 048793          375 FLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN--K  452 (683)
Q Consensus       375 ~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~--k  452 (683)
                      .|...+.++ |++.|..|-..|..+..++.        .+.++.|..++.+..  .+..++..|+..|.|.......  .
T Consensus         9 ~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~--~~~~~r~~A~i~lkn~i~~~~~~~~   77 (861)
T d2bpta1           9 LLENSILSP-DQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDEN--TKLEGRILAALTLKNELVSKDSVKT   77 (861)
T ss_dssp             HHHHHHHCS-SHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTT--SCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhhcccchhh
Confidence            344555667 89999999999988765442        367788888887641  1567888888888886532111  0


Q ss_pred             H----HH---hcc---cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC-hhHHH
Q 048793          453 T----RI---MET---EGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP-TSSKR  521 (683)
Q Consensus       453 ~----~I---~~~---~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~-~~~~~  521 (683)
                      .    ..   ...   ...-..++..|.+. +..++..++.++..++..+-...   .-...++.|+..+.+.+ ...+.
T Consensus        78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~i~~~~~p~~---~wpeli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          78 QQFAQRWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHHH
T ss_pred             hhHHhhhHhcCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCCcC---chHHHHHHHHHHhcCCCcHHHHH
Confidence            0    00   000   01234566677776 68999999999998875432110   01347888888887665 44667


Q ss_pred             HHHHHHHHhcCCcchhHHHHhc---CchHHHHHHhcc-C--chhHHHHHHHHHHcCCc-HHHH---H-HcCchHHHHHHH
Q 048793          522 DALVAILNLAGDRETVGRLVER---GIVEIVAEAMDV-L--PEESVTILEAVVKRGGL-TAIV---A-AYNTIKKLCILL  590 (683)
Q Consensus       522 ~A~~aL~nLs~~~~n~~~iv~a---G~V~~Lv~lL~~-~--~~~~~~aL~~L~~l~~~-~e~~---~-~~g~v~~Lv~lL  590 (683)
                      .|+.+|..++..-.+...-.-.   ..+..++..+.. .  ......++..+..+... ....   . ....+..+...+
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  233 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT  233 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh
Confidence            8899999988653332111111   233344444432 2  23455666666553322 1111   0 012345566667


Q ss_pred             hcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          591 REGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       591 ~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ...++..+..|..+|..++...+... ...+.. -+...+.....+.++.++..|..++..+.+
T Consensus       234 ~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         234 QAEDIEVQAAAFGCLCKIMSKYYTFM-KPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHGGGC-HHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            78899999999999999987544322 222211 123344455667788999998888877655

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.77  E-value=0.001  Score=55.68  Aligned_cols=87  Identities=14%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCchh
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILEAN  451 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~~~  451 (683)
                      .++.|+..|.+. ++.++..|++.|..+..           .+++|.|+.+|.+.    ++.++..|+.+|..+.     
T Consensus        23 ~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~----~~~VR~~a~~aL~~i~-----   81 (111)
T d1te4a_          23 AFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDD----SGFVRSGAARSLEQIG-----   81 (111)
T ss_dssp             THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHC----CTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccc----hhHHHHHHHHHHHHhC-----
Confidence            567788999988 99999999999876531           24689999999998    9999999999997652     


Q ss_pred             HHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 048793          452 KTRIMETEGALNGVIEVLRSGATWEAKGNAAATIF  486 (683)
Q Consensus       452 k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~  486 (683)
                           .. ++++.|..++++. +..+|..|+.+|.
T Consensus        82 -----~~-~~~~~L~~ll~d~-~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 -----GE-RVRAAMEKLAETG-TGFARKVAVNYLE  109 (111)
T ss_dssp             -----SH-HHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred             -----cc-chHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence                 22 6788898999887 7899999988774

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.034  Score=61.77  Aligned_cols=273  Identities=9%  Similarity=0.054  Sum_probs=156.3

Q ss_pred             hHHHHHHHhccC-CCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC
Q 048793          372 TASFLINKLATS-QSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       372 ~i~~Lv~~L~s~-~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~  448 (683)
                      .++.|++.+.++ .+...+..++..|..++++-.  ...+..  ...++.++..+.+..  .+..++..|+.++.++...
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~--~~~~~~~~~~il~~i~~~l~~~~--~~~~v~~~a~~~l~~~~~~  204 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTC--SCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHcCcC--ccHHHHHHHHHHHHHHHHH
Confidence            466777877654 246677788888888876543  122222  357888888886651  1467888898888876543


Q ss_pred             chhH--HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchh-hHHhhhcccHHHHHHhhcCCChhHHHHHHH
Q 048793          449 EANK--TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHR-KTLGRKTRVVKGLMDLVKGGPTSSKRDALV  525 (683)
Q Consensus       449 ~~~k--~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~-~~i~~~~G~i~~Lv~lL~~~~~~~~~~A~~  525 (683)
                      ....  ...... -.++.+...+... +.+.+..++.+|..+....... ..... ....+.+...+.+........++.
T Consensus       205 ~~~~~~~~~~~~-~i~~~l~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~  281 (876)
T d1qgra_         205 TKANFDKESERH-FIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIE  281 (876)
T ss_dssp             CHHHHTSHHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             hhhhhhHHHHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhccccHHHHHHHHH
Confidence            2111  111111 2455566666666 7899999999999887643211 11111 234555666667667777777777


Q ss_pred             HHHHhcCCcch---------------------hHHHHhcCchHHHHHHhccC----c----hh---HHHHHHHHHHcCCc
Q 048793          526 AILNLAGDRET---------------------VGRLVERGIVEIVAEAMDVL----P----EE---SVTILEAVVKRGGL  573 (683)
Q Consensus       526 aL~nLs~~~~n---------------------~~~iv~aG~V~~Lv~lL~~~----~----~~---~~~aL~~L~~l~~~  573 (683)
                      .+..++.....                     .........++.+...+...    .    ..   +..++..+....+.
T Consensus       282 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~  361 (876)
T d1qgra_         282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh
Confidence            66666542110                     01111122334444444311    1    11   33333333332211


Q ss_pred             HHHHHHcCchHHHHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 048793          574 TAIVAAYNTIKKLCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILR  653 (683)
Q Consensus       574 ~e~~~~~g~v~~Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~  653 (683)
                      . ...  ...+.+...+.+.+.+.++.+..++..+............+  ..+++.+...+.+.++.++..|.+.+..+.
T Consensus       362 ~-~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~  436 (876)
T d1qgra_         362 D-IVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             G-GHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             h-hhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHH
Confidence            1 000  11233344455678888888888887776544333333322  356788888999999999999999999888


Q ss_pred             hhh
Q 048793          654 RWA  656 (683)
Q Consensus       654 ~~~  656 (683)
                      ++-
T Consensus       437 ~~~  439 (876)
T d1qgra_         437 ELL  439 (876)
T ss_dssp             HHC
T ss_pred             HHc
Confidence            753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00073  Score=55.19  Aligned_cols=44  Identities=14%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             cccccccccCCCC---ceecCCccccchhhHHHHHh----cCC---CCCCCCCC
Q 048793          276 DFRCPISLELMRN---PVVVATGQTYDRQSISLWIE----SGH---NTCPKTGQ  319 (683)
Q Consensus       276 ~f~CPis~~~m~d---Pv~~~~g~ty~r~~I~~w~~----~g~---~~cP~~~~  319 (683)
                      ..-||||++-+..   |.+.+|||.||+.||.+|+.    +|.   -+||.++-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            3459999988753   44568999999999999995    233   25998653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.055  Score=59.67  Aligned_cols=269  Identities=8%  Similarity=0.067  Sum_probs=155.4

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHH--hCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccCc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRACIAE--AGAIALLARHLGPDTASRLPNLQVNAVTTILNLSILE  449 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~--~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~~  449 (683)
                      .++.|+..+.++.+...+..|+..|..++......-..+..  ...++.++..+.+.  ..+..++..|+.++.++...-
T Consensus       135 li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~--~~~~~v~~~a~~~l~~~~~~~  212 (861)
T d2bpta1         135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST--ETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHH
Confidence            46678888877635667778888888887554321111111  12344444444433  116789999999998876432


Q ss_pred             -hhH-HHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcch--hhHHhhhcccHHHH-HHhhcCCChhHHHHHH
Q 048793          450 -ANK-TRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAH--RKTLGRKTRVVKGL-MDLVKGGPTSSKRDAL  524 (683)
Q Consensus       450 -~~k-~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~--~~~i~~~~G~i~~L-v~lL~~~~~~~~~~A~  524 (683)
                       .+- ...... ..++.+...++.+ +.+.+..+..+|..+......  ...+   ...+..+ .....+.++..+..++
T Consensus       213 ~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~l~~i~~~~~~~~~~~l---~~~l~~l~~~~~~~~~~~v~~~~~  287 (861)
T d2bpta1         213 KNNMEREGERN-YLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYM---EQALYALTIATMKSPNDKVASMTV  287 (861)
T ss_dssp             HHHHTSHHHHH-HHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHH---HHTHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hHhHHhhhhhh-HHHHhHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCccHHHHHHHH
Confidence             111 111112 3567777888877 799999999999988754221  1111   1233333 3444566677888888


Q ss_pred             HHHHHhcCCcchhHH---------------H--HhcCchHHHHHHhccC------c--hh---HHHHHHHHHHcCCcHHH
Q 048793          525 VAILNLAGDRETVGR---------------L--VERGIVEIVAEAMDVL------P--EE---SVTILEAVVKRGGLTAI  576 (683)
Q Consensus       525 ~aL~nLs~~~~n~~~---------------i--v~aG~V~~Lv~lL~~~------~--~~---~~~aL~~L~~l~~~~e~  576 (683)
                      ..+..++........               +  .-...++.+...+...      .  ..   ...++..+....+.   
T Consensus       288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  364 (861)
T d2bpta1         288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---  364 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch---
Confidence            888777643221100               0  0112345555555421      0  11   22333333322111   


Q ss_pred             HHHcCchHH----HHHHHhcCChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 048793          577 VAAYNTIKK----LCILLREGSDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRIL  652 (683)
Q Consensus       577 ~~~~g~v~~----Lv~lL~~~s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l  652 (683)
                          ..++.    +...+...+...++.|..++..+............+  ..+++.+..++.+.++.+|..|.+.+..+
T Consensus       365 ----~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         365 ----HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             ----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ----hhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence                11232    223345567788899998888887655433333333  34688888999999999999999999888


Q ss_pred             Hhhh
Q 048793          653 RRWA  656 (683)
Q Consensus       653 ~~~~  656 (683)
                      .++-
T Consensus       439 ~~~~  442 (861)
T d2bpta1         439 ADSV  442 (861)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7753

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.057  Score=59.84  Aligned_cols=235  Identities=17%  Similarity=0.112  Sum_probs=137.0

Q ss_pred             CcHHHHHHhhCCCCCCCChhhHHHHHHHHHhcccC-chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCc
Q 048793          414 GAIALLARHLGPDTASRLPNLQVNAVTTILNLSIL-EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVH  492 (683)
Q Consensus       414 G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~~-~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~  492 (683)
                      ..++.+..++....  ++..+++.++.++..++.. .+.-.....  -.++.+...|++..+++++..|+.++..++...
T Consensus       606 ~i~~~l~~~l~~~~--~~~~~~~~~l~~l~~l~~~~~~~~~~~l~--~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~  681 (876)
T d1qgra_         606 VVMASLLRMFQSTA--GSGGVQEDALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL  681 (876)
T ss_dssp             HHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence            45667777776431  1567888898888887642 122111222  367888888887656889999999998887643


Q ss_pred             chhhHHhhhcccHHHHHHhhcCCC--hhHHHHHHHHHHHhcCCcchhHHHHhcCchHHHHHHhc----c----CchhHHH
Q 048793          493 AHRKTLGRKTRVVKGLMDLVKGGP--TSSKRDALVAILNLAGDRETVGRLVERGIVEIVAEAMD----V----LPEESVT  562 (683)
Q Consensus       493 ~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~----~----~~~~~~~  562 (683)
                      .....--. ...++.++..|.+.+  ...+..++.++..++..-+..  +  ...++.++..|.    .    +......
T Consensus       682 ~~~~~~~~-~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~--~--~~yl~~~l~~l~~~~~~~~~~~~~~~~~  756 (876)
T d1qgra_         682 QSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE--F--KKYLEVVLNTLQQASQAQVDKSDYDMVD  756 (876)
T ss_dssp             GGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG--G--GGGHHHHHHHHHHHHTCCCCTTCHHHHH
T ss_pred             HHhhhhhH-HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHh--h--HHHHHHHHHHHHHHHhcccCccchhHHH
Confidence            33322222 468889999997654  568888999998886532210  1  122344444432    1    1111111


Q ss_pred             HHHHHHH------------cCCcHH----HHHHc-CchHHHHHHHh------cCChHHHHHHHHHHHHHHhcCCchHHHH
Q 048793          563 ILEAVVK------------RGGLTA----IVAAY-NTIKKLCILLR------EGSDTSRESAAATLVTICRKGGSEMVAD  619 (683)
Q Consensus       563 aL~~L~~------------l~~~~e----~~~~~-g~v~~Lv~lL~------~~s~~~ke~A~~aL~~L~~~~~~~~~~~  619 (683)
                      .+..+..            +.....    ..... ..++.++.++.      ..+......|+.+|..|+..-+......
T Consensus       757 ~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~  836 (876)
T d1qgra_         757 YLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL  836 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111110            000000    00000 11344444332      2467788899999999987666554444


Q ss_pred             HHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhc
Q 048793          620 IAAVPGIERVIWELMESGTARARRKAAALLRILRRWAA  657 (683)
Q Consensus       620 ~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~~~~  657 (683)
                      +.....+.++|..-..+..+..|..|.|+.+.+.+..+
T Consensus       837 ~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~  874 (876)
T d1qgra_         837 VEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN  874 (876)
T ss_dssp             HHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence            33334556667677888899999999999999988554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.068  Score=54.03  Aligned_cols=259  Identities=14%  Similarity=0.073  Sum_probs=152.6

Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhccCchhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHHHHhccc-Cch-hHHH
Q 048793          377 INKLATSQSMEAANDAVYELRSLSKTDSDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTTILNLSI-LEA-NKTR  454 (683)
Q Consensus       377 v~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs~-~~~-~k~~  454 (683)
                      ++.+-++ |.+.+..|-..|..+...++        .+.++.|..+|.++.  .+..++..|+..|.|.-. ... .+..
T Consensus         6 l~~~~s~-d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~--~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           6 LEKTVSP-DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPG--NSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHhCc-CHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            3444566 89999999999988876432        356777888775541  156788888888877542 211 1111


Q ss_pred             Hh----------cccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhhhcccHHHHHHhhcCCC--hhHHHH
Q 048793          455 IM----------ETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGRKTRVVKGLMDLVKGGP--TSSKRD  522 (683)
Q Consensus       455 I~----------~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~~~G~i~~Lv~lL~~~~--~~~~~~  522 (683)
                      ..          .. .....++..+.+. +. .+..++.++..++.......   .-.+.++.|+..+.++.  ...+..
T Consensus        75 ~~~~~~~l~~~~~~-~i~~~ll~~~~~~-~~-~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~  148 (458)
T d1ibrb_          75 YQQRWLAIDANARR-EVKNYVLQTLGTE-TY-RPSSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKES  148 (458)
T ss_dssp             HHHHHHTSCHHHHH-HHHHHHHHHTTCC-CS-SSCSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             HhhhhccCCHHHHH-HHHHHHHhccCCC-cH-HHHHHHHHHHHHHHHhCCcc---cCcchhHHHHHHHHhhcchHHHHHH
Confidence            10          11 2344455655544 22 33445555555543322111   11478999999887643  456677


Q ss_pred             HHHHHHHhcCCcc-hhHHHHhcCchHHHHHHhccC---chhHHHHHHHHHHcCCcHHHHHH-c----CchHHHHHHHhcC
Q 048793          523 ALVAILNLAGDRE-TVGRLVERGIVEIVAEAMDVL---PEESVTILEAVVKRGGLTAIVAA-Y----NTIKKLCILLREG  593 (683)
Q Consensus       523 A~~aL~nLs~~~~-n~~~iv~aG~V~~Lv~lL~~~---~~~~~~aL~~L~~l~~~~e~~~~-~----g~v~~Lv~lL~~~  593 (683)
                      ++.+|..++.... ....-.-...++.++..+.++   .+....++..+..+......... .    ...+.+..++...
T Consensus       149 ~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  228 (458)
T d1ibrb_         149 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  228 (458)
T ss_dssp             HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCC
Confidence            8888888765322 222222234567777777642   23466667666665433221111 1    1234555556678


Q ss_pred             ChHHHHHHHHHHHHHHhcCCchHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 048793          594 SDTSRESAAATLVTICRKGGSEMVADIAAVPGIERVIWELMESGTARARRKAAALLRILRR  654 (683)
Q Consensus       594 s~~~ke~A~~aL~~L~~~~~~~~~~~~~~~~G~~~~L~~Ll~~~~~~~k~kA~~lL~~l~~  654 (683)
                      ++..+..+..+|..++...+.. ....+ .......+.....+.++.++..|...+..+.+
T Consensus       229 ~~~~~~~~~~~l~~i~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         229 DTRVRVAALQNLVKIMSLYYQY-METYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGG-CTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhHHH-HHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            8899999999999998765432 11111 22345556667788889999999888877755

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=1.3  Score=45.58  Aligned_cols=254  Identities=12%  Similarity=0.102  Sum_probs=139.5

Q ss_pred             hHHHHHHHhccCCCHHHHHHHHHHHHhhhccCchhHH---HHHHhC--cHHHHHHhhCCCCCCCChhhHHHHHHHHHhcc
Q 048793          372 TASFLINKLATSQSMEAANDAVYELRSLSKTDSDSRA---CIAEAG--AIALLARHLGPDTASRLPNLQVNAVTTILNLS  446 (683)
Q Consensus       372 ~i~~Lv~~L~s~~~~~~~~~A~~~L~~La~~~~~nr~---~i~~~G--~Ip~Lv~lL~s~~~~~d~~~qe~A~~aL~nLs  446 (683)
                      .+..++.+|+....++.....+.-+..+..+++....   .+.+..  .-+++..+|.+.    +.-+...+..++..++
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~----d~~~~~~s~~i~~ll~  150 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGD----FQTVLISGFNVVSLLV  150 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSS----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCc----hhHHHHHHHHHHHHHH
Confidence            5667888887654778888888877777766553222   222221  223455556555    6666666766666665


Q ss_pred             cCchhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcchhhHHhh-hcccHHHHHHhhcCCChhHHHHHHH
Q 048793          447 ILEANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHAHRKTLGR-KTRVVKGLMDLVKGGPTSSKRDALV  525 (683)
Q Consensus       447 ~~~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~~~~~i~~-~~G~i~~Lv~lL~~~~~~~~~~A~~  525 (683)
                      ..........+.-.-...+...|.++.+.+....|+..|..|...+++|..+.. ....+++|+++|+...         
T Consensus       151 ~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~---------  221 (477)
T d1ho8a_         151 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRAT---------  221 (477)
T ss_dssp             STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHH---------
T ss_pred             hccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHh---------
Confidence            443221211111001112333343443688888888999999999999998753 2457888888886310         


Q ss_pred             HHHHhcCCcchhHHHHhcCchHHHHHHhccCc--hhHHHHHHHHHHcCCcHHHHHHc-----CchHHHHHHHhc-CChHH
Q 048793          526 AILNLAGDRETVGRLVERGIVEIVAEAMDVLP--EESVTILEAVVKRGGLTAIVAAY-----NTIKKLCILLRE-GSDTS  597 (683)
Q Consensus       526 aL~nLs~~~~n~~~iv~aG~V~~Lv~lL~~~~--~~~~~aL~~L~~l~~~~e~~~~~-----g~v~~Lv~lL~~-~s~~~  597 (683)
                                      ..+....++.-.....  ...=.++-.++.++-..+.+...     +-++.|+.+++. ...++
T Consensus       222 ----------------~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKv  285 (477)
T d1ho8a_         222 ----------------DSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKV  285 (477)
T ss_dssp             ----------------C-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred             ----------------cccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                            0001111111111111  11233444455555555444332     225566666643 45566


Q ss_pred             HHHHHHHHHHHHhcCCc---hHHHHHHhcCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 048793          598 RESAAATLVTICRKGGS---EMVADIAAVPGIERVIWELMESG--TARARRKAAALLRILRR  654 (683)
Q Consensus       598 ke~A~~aL~~L~~~~~~---~~~~~~~~~~G~~~~L~~Ll~~~--~~~~k~kA~~lL~~l~~  654 (683)
                      .+-++.+|.|++.....   ......+...++.+.+..|...+  ++++.+--..|-..|.+
T Consensus       286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~  347 (477)
T d1ho8a_         286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILEN  347 (477)
T ss_dssp             HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            77788888888764322   22334455667777766665554  77888777777776665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.52  E-value=0.033  Score=52.90  Aligned_cols=109  Identities=11%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             hhhhHHHHHHHhccCCCHHHHHHHHHHH-----HhhhccC-chhHHHHHHhCcHHHHHHhhCCCCCCCChhhHHHHHHH-
Q 048793          369 TKMTASFLINKLATSQSMEAANDAVYEL-----RSLSKTD-SDSRACIAEAGAIALLARHLGPDTASRLPNLQVNAVTT-  441 (683)
Q Consensus       369 ~~~~i~~Lv~~L~s~~~~~~~~~A~~~L-----~~La~~~-~~nr~~i~~~G~Ip~Lv~lL~s~~~~~d~~~qe~A~~a-  441 (683)
                      ....+..|..+++.. +++++..|+..|     ..+..+. ...|..++..=..+.|..++..+    +..++..++.. 
T Consensus        64 ~~a~~~~L~~Ll~D~-d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~----d~~VR~~aa~~~  138 (233)
T d1lrva_          64 RYSPVEALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR----DYLVRAYVVQRI  138 (233)
T ss_dssp             TTSCGGGGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS----SHHHHHHHHHHS
T ss_pred             hcCCHHHHHHHhcCC-CHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCC----CHHHHHHHHhcc
Confidence            333455566777777 888888887653     2333322 22344444443456677777777    77777766543 


Q ss_pred             ----HHhcccCc--hhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHH
Q 048793          442 ----ILNLSILE--ANKTRIMETEGALNGVIEVLRSGATWEAKGNAAAT  484 (683)
Q Consensus       442 ----L~nLs~~~--~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~  484 (683)
                          |..|..++  +.+..+... -..+.|..+++.. +..++..++..
T Consensus       139 ~~~~L~~L~~D~d~~VR~~aA~~-~~~~~L~~l~~D~-d~~VR~~aa~~  185 (233)
T d1lrva_         139 PPGRLFRFMRDEDRQVRKLVAKR-LPEESLGLMTQDP-EPEVRRIVASR  185 (233)
T ss_dssp             CGGGGGGTTTCSCHHHHHHHHHH-SCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred             chhHHHHHhcCCCHHHHHHHHHh-cCHHHHHHHccCC-CHHHHHHHHHh
Confidence                22233322  234444433 3345555555555 56666666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.99  E-value=2.7  Score=41.41  Aligned_cols=174  Identities=16%  Similarity=0.123  Sum_probs=106.6

Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhccCchhH-HHHHHhCcHHHHHHhhCC----CCC---CCChhhHHHHHHHHHhcccC
Q 048793          377 INKLATSQSMEAANDAVYELRSLSKTDSDSR-ACIAEAGAIALLARHLGP----DTA---SRLPNLQVNAVTTILNLSIL  448 (683)
Q Consensus       377 v~~L~s~~~~~~~~~A~~~L~~La~~~~~nr-~~i~~~G~Ip~Lv~lL~s----~~~---~~d~~~qe~A~~aL~nLs~~  448 (683)
                      |..|.++...+.....+..|+.--...+-.. ..+ .++|+..|+.+|..    +..   ..+...+..++.+|..+...
T Consensus         8 v~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~   86 (343)
T d2bnxa1           8 IQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN   86 (343)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc
Confidence            4445544233434444555544334443222 223 45677778887731    111   11356778889999998888


Q ss_pred             chhHHHHhcccCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCcc---h----------hhHHhhhcccHHHHHHhhcCC
Q 048793          449 EANKTRIMETEGALNGVIEVLRSGATWEAKGNAAATIFSLSGVHA---H----------RKTLGRKTRVVKGLMDLVKGG  515 (683)
Q Consensus       449 ~~~k~~I~~~~G~I~~Lv~lL~~~~~~~~~~~Aa~~L~~Ls~~~~---~----------~~~i~~~~G~i~~Lv~lL~~~  515 (683)
                      ..+...+...++++..|+..|.+. ...++..|..+|..+|...+   +          .....+ .+-..++|+.|+++
T Consensus        87 ~~G~~~vl~~~~~i~~l~~~L~s~-~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          87 KFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSG  164 (343)
T ss_dssp             HHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTSTT
T ss_pred             HHHHHHHHcChHHHHHHHHccCCC-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHHHHHHhcc
Confidence            888888888789999999999887 69999999999999885421   1          122233 46678888888766


Q ss_pred             C-hhHHHHHHHHHHHhcCCcch-------hHHHHhcCchHHHHHHhc
Q 048793          516 P-TSSKRDALVAILNLAGDRET-------VGRLVERGIVEIVAEAMD  554 (683)
Q Consensus       516 ~-~~~~~~A~~aL~nLs~~~~n-------~~~iv~aG~V~~Lv~lL~  554 (683)
                      . .+.+..++..+-.|..+.++       |..+..+|..+. ++.|.
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~  210 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR  210 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHH-HHHHH
Confidence            4 34444444444445554432       344566676554 44444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.39  E-value=0.24  Score=46.63  Aligned_cols=21  Identities=5%  Similarity=-0.031  Sum_probs=12.3

Q ss_pred             HHHHHHhhCCCCCCCChhhHHHHHH
Q 048793          416 IALLARHLGPDTASRLPNLQVNAVT  440 (683)
Q Consensus       416 Ip~Lv~lL~s~~~~~d~~~qe~A~~  440 (683)
                      ++.|..|++.+    |+.++..|+.
T Consensus        68 ~~~L~~Ll~D~----d~~VR~~AA~   88 (233)
T d1lrva_          68 VEALTPLIRDS----DEVVRRAVAY   88 (233)
T ss_dssp             GGGGGGGTTCS----SHHHHHHHHT
T ss_pred             HHHHHHHhcCC----CHHHHHHHHH
Confidence            44555666666    6666666654